Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24698.t1 | XP_024625327.1 | 91.8 | 464 | 29 | 3 | 1 | 459 | 1 | 460 | 9.20E-239 | 835.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24698.t1 | Q2HTF1 | 91.8 | 464 | 29 | 3 | 1 | 459 | 1 | 460 | 6.6e-239 | 835.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050298 | MS.gene24698 | 0.888894 | 3.94E-73 | -1.69E-46 |
| MS.gene052142 | MS.gene24698 | 0.837176 | 6.07E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene24698 | 0.840121 | 1.05E-57 | -1.69E-46 |
| MS.gene055359 | MS.gene24698 | 0.811388 | 7.18E-51 | -1.69E-46 |
| MS.gene057881 | MS.gene24698 | 0.81063 | 1.05E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene24698 | 0.827461 | 1.54E-54 | -1.69E-46 |
| MS.gene059768 | MS.gene24698 | 0.824178 | 9.29E-54 | -1.69E-46 |
| MS.gene060691 | MS.gene24698 | 0.832089 | 1.15E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24698.t1 | MTR_1g059760 | 51.429 | 455 | 201 | 8 | 9 | 452 | 18 | 463 | 2.05e-160 | 462 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24698.t1 | AT3G52610 | 45.957 | 470 | 222 | 12 | 9 | 455 | 13 | 473 | 9.60e-138 | 404 |
Find 101 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCTCAAATCACAATTT+TGG | 0.217496 | 7.3:+9625608 | MS.gene24698:CDS |
| TCATGGTTTGGGACCATCTA+TGG | 0.223620 | 7.3:+9627458 | MS.gene24698:CDS |
| ATGGGGTGTGCTTCGGTTCA+TGG | 0.237066 | 7.3:+9627441 | MS.gene24698:CDS |
| TGTGCTTCGGTTCATGGTTT+GGG | 0.291835 | 7.3:+9627447 | MS.gene24698:CDS |
| AATAACTGCAGCGGGATTAA+TGG | 0.304334 | 7.3:+9625508 | MS.gene24698:CDS |
| GTGTGCTTCGGTTCATGGTT+TGG | 0.307756 | 7.3:+9627446 | MS.gene24698:CDS |
| GTCCTCAAACACCGACATTA+TGG | 0.308407 | 7.3:-9627364 | None:intergenic |
| CGACATTATGGATGTTCTTA+AGG | 0.349557 | 7.3:-9627352 | None:intergenic |
| TGTTAATAAGCTCTTGCATT+TGG | 0.357546 | 7.3:-9627554 | None:intergenic |
| GCAAAGGGAAGAAACATATC+TGG | 0.359281 | 7.3:+9625090 | MS.gene24698:CDS |
| TGAAAACGAGAAATATCAAT+AGG | 0.367993 | 7.3:-9624600 | None:intergenic |
| GAACTAGCCAAGAGGACTTA+TGG | 0.372116 | 7.3:+9627228 | MS.gene24698:CDS |
| ATCTAGCCTTCCATCCCTTA+TGG | 0.374376 | 7.3:-9627493 | None:intergenic |
| GCGATCGAGGATCTTGTTCC+TGG | 0.396661 | 7.3:+9625065 | MS.gene24698:CDS |
| ATCCATAATGTCGGTGTTTG+AGG | 0.408361 | 7.3:+9627362 | MS.gene24698:CDS |
| ACCAGGGTTCTCTATGGCCT+TGG | 0.408629 | 7.3:-9627319 | None:intergenic |
| AGTAAACCTAAAAGAATTAA+CGG | 0.410580 | 7.3:-9625141 | None:intergenic |
| ATCCATCCCCGTTGCACTCT+AGG | 0.410966 | 7.3:+9627529 | MS.gene24698:CDS |
| TTTGGTCCCTAGAGTGCAAC+GGG | 0.411997 | 7.3:-9627536 | None:intergenic |
| TACGATCTTGCCACGTGTTA+CGG | 0.414492 | 7.3:-9624845 | None:intergenic |
| CTTATCATTGTTCTTAGAGT+TGG | 0.418380 | 7.3:-9627259 | None:intergenic |
| TTATTACCCTCACTGATTGC+CGG | 0.431014 | 7.3:+9625570 | MS.gene24698:CDS |
| TGTCAAACCAGGGTTCTCTA+TGG | 0.431401 | 7.3:-9627325 | None:intergenic |
| CACTCCGTTGCAACAAATCA+TGG | 0.432383 | 7.3:+9624809 | MS.gene24698:CDS |
| TGTTGAGGATGTTGTTCCTT+TGG | 0.434930 | 7.3:+9625043 | MS.gene24698:CDS |
| CTTAAGGATGATGTCAAACC+AGG | 0.439362 | 7.3:-9627336 | None:intergenic |
| ATGAAGGCTATTCTTATTGA+AGG | 0.442750 | 7.3:+9627579 | MS.gene24698:CDS |
| AAAGCCATTCGTGGTGGCAC+TGG | 0.454895 | 7.3:+9624546 | MS.gene24698:CDS |
| AGGAGTGTGGGATGTAAGAA+AGG | 0.459967 | 7.3:-9624721 | None:intergenic |
| CATGGTTTGGGACCATCTAT+GGG | 0.463005 | 7.3:+9627459 | MS.gene24698:CDS |
| GGACTACATGGGGTGTGCTT+CGG | 0.472358 | 7.3:+9627434 | MS.gene24698:CDS |
| AAGAATAGTTCTAAGAAGTA+CGG | 0.474242 | 7.3:+9625545 | MS.gene24698:CDS |
| TCAACAACCACGTGATCAAA+GGG | 0.475334 | 7.3:+9627190 | MS.gene24698:CDS |
| TCCATCCCCGTTGCACTCTA+GGG | 0.489654 | 7.3:+9627530 | MS.gene24698:CDS |
| AAATGCTCCATAAGTCCTCT+TGG | 0.502139 | 7.3:-9627235 | None:intergenic |
| TGTTTCTTCCCTTTGCGACC+AGG | 0.508762 | 7.3:-9625083 | None:intergenic |
| ATGTCGACGGTTGAAACAAA+AGG | 0.509382 | 7.3:+9624489 | MS.gene24698:CDS |
| TCCCTAGAGTGCAACGGGGA+TGG | 0.509671 | 7.3:-9627531 | None:intergenic |
| TTCAGGGTTGTAAGCAGAGT+AGG | 0.515071 | 7.3:+9625468 | MS.gene24698:intron |
| ATCTTGTTCCTGGTCGCAAA+GGG | 0.516393 | 7.3:+9625075 | MS.gene24698:CDS |
| CTCAACAACCACGTGATCAA+AGG | 0.519923 | 7.3:+9627189 | MS.gene24698:CDS |
| GCAACAAGAGGTTGGAGTAG+AGG | 0.526477 | 7.3:+9627413 | MS.gene24698:CDS |
| GGAGAATGTTGTTGCTGTTG+AGG | 0.528626 | 7.3:+9625028 | MS.gene24698:CDS |
| CTTTGATCACGTGGTTGTTG+AGG | 0.530369 | 7.3:-9627188 | None:intergenic |
| AGAATAGTTCTAAGAAGTAC+GGG | 0.531546 | 7.3:+9625546 | MS.gene24698:CDS |
| AATGCCAGTGCCACCACGAA+TGG | 0.537676 | 7.3:-9624550 | None:intergenic |
| TTGACACCATAAGGGATGGA+AGG | 0.538475 | 7.3:+9627487 | MS.gene24698:CDS |
| AGAGCTTATTAACAAGATGA+AGG | 0.539515 | 7.3:+9627563 | MS.gene24698:CDS |
| GCTTACATCTAAAACCCTCT+TGG | 0.543120 | 7.3:-9625237 | None:intergenic |
| TATGGCCTTGGACATAAGAA+AGG | 0.543788 | 7.3:-9627307 | None:intergenic |
| TGTGGAGCAATAACTGCAGC+GGG | 0.545669 | 7.3:+9625500 | MS.gene24698:CDS |
| GATCTTGTTCCTGGTCGCAA+AGG | 0.546101 | 7.3:+9625074 | MS.gene24698:CDS |
| TGTTGTTCCTTTGGCGATCG+AGG | 0.548071 | 7.3:+9625052 | MS.gene24698:CDS |
| AAGGCTATTCTTATTGAAGG+TGG | 0.558507 | 7.3:+9627582 | MS.gene24698:CDS |
| GAAACAAAAGGTCGTAATGT+TGG | 0.558743 | 7.3:+9624501 | MS.gene24698:CDS |
| AAAGGAGAAAATAGTGTCTG+TGG | 0.563282 | 7.3:-9624703 | None:intergenic |
| CATGACCTTTCTTATGTCCA+AGG | 0.571473 | 7.3:+9627302 | MS.gene24698:CDS |
| AATTGTGATTTGAGAGAGGT+GGG | 0.571654 | 7.3:-9625604 | None:intergenic |
| TGTTCCATGATTTGTTGCAA+CGG | 0.573358 | 7.3:-9624813 | None:intergenic |
| GGTTGGAGTAGAGGACTACA+TGG | 0.579061 | 7.3:+9627422 | MS.gene24698:CDS |
| GGCAAGATGCAACAAGAGGT+TGG | 0.579461 | 7.3:+9627405 | MS.gene24698:CDS |
| GAGGACACGGTGGTTGATGA+CGG | 0.580211 | 7.3:+9627381 | MS.gene24698:CDS |
| AAATTGTGATTTGAGAGAGG+TGG | 0.580439 | 7.3:-9625605 | None:intergenic |
| TAGCTTAAGTATTATGTCGA+CGG | 0.581330 | 7.3:+9624476 | None:intergenic |
| CAAAGGGAAGAAACATATCT+GGG | 0.581978 | 7.3:+9625091 | MS.gene24698:CDS |
| CCAAAATTGTGATTTGAGAG+AGG | 0.582441 | 7.3:-9625608 | None:intergenic |
| TGAGAGAGGTGGGTCAAGAG+TGG | 0.586797 | 7.3:-9625594 | None:intergenic |
| AGCTGGTGCAAAGCCATTCG+TGG | 0.588805 | 7.3:+9624537 | MS.gene24698:CDS |
| GATCACGTGGTTGTTGAGGA+TGG | 0.593465 | 7.3:-9627184 | None:intergenic |
| AAACATGTCAGTATCAATAC+CGG | 0.597857 | 7.3:-9624868 | None:intergenic |
| ACAAAAGGTCGTAATGTTGG+TGG | 0.598123 | 7.3:+9624504 | MS.gene24698:CDS |
| TTGGTGGCACAGAATGTAGC+TGG | 0.609381 | 7.3:+9624520 | MS.gene24698:CDS |
| CTTAAGAACATCCATAATGT+CGG | 0.610419 | 7.3:+9627353 | MS.gene24698:CDS |
| ACAAGATCCTCGATCGCCAA+AGG | 0.611486 | 7.3:-9625059 | None:intergenic |
| AAATGCTAGGTCTTCACAAG+TGG | 0.613957 | 7.3:+9625187 | MS.gene24698:CDS |
| AATGTCGGTGTTTGAGGACA+CGG | 0.619648 | 7.3:+9627368 | MS.gene24698:CDS |
| ATTTGGTCCCTAGAGTGCAA+CGG | 0.621651 | 7.3:-9627537 | None:intergenic |
| AGTGGACCGGCAATCAGTGA+GGG | 0.635780 | 7.3:-9625576 | None:intergenic |
| GTGTGGAGCAATAACTGCAG+CGG | 0.636382 | 7.3:+9625499 | MS.gene24698:CDS |
| AACACGTGGCAAGATCGTAC+CGG | 0.650719 | 7.3:+9624849 | MS.gene24698:CDS |
| AAGAAACATATCTGGGAGCG+TGG | 0.650935 | 7.3:+9625098 | MS.gene24698:CDS |
| CAATCAAACTGATACCAAGA+GGG | 0.655063 | 7.3:+9625223 | MS.gene24698:CDS |
| TCCAAGGCCATAGAGAACCC+TGG | 0.655783 | 7.3:+9627318 | MS.gene24698:CDS |
| AACAACCACGTGATCAAAGG+GGG | 0.655827 | 7.3:+9627192 | MS.gene24698:CDS |
| CGGCGGCAAGATGCAACAAG+AGG | 0.657442 | 7.3:+9627401 | MS.gene24698:CDS |
| GTTGGAGTAGAGGACTACAT+GGG | 0.661686 | 7.3:+9627423 | MS.gene24698:CDS |
| TCAATCAAACTGATACCAAG+AGG | 0.661853 | 7.3:+9625222 | MS.gene24698:CDS |
| GCTTGTGTTGATGAAAGATG+AGG | 0.663457 | 7.3:+9624998 | MS.gene24698:CDS |
| GAGTGGACCGGCAATCAGTG+AGG | 0.664520 | 7.3:-9625577 | None:intergenic |
| CAGAGTAGGATTAAGCTGTG+TGG | 0.667291 | 7.3:+9625482 | MS.gene24698:CDS |
| GAGGTGGGTCAAGAGTGGAC+CGG | 0.670737 | 7.3:-9625589 | None:intergenic |
| TTAAGGATGATGTCAAACCA+GGG | 0.675705 | 7.3:-9627335 | None:intergenic |
| ATGAACTGAACCGTAACACG+TGG | 0.676263 | 7.3:+9624835 | MS.gene24698:CDS |
| TGGTGCAAAGCCATTCGTGG+TGG | 0.684258 | 7.3:+9624540 | MS.gene24698:CDS |
| GTCTTTGGGAACTAGCCAAG+AGG | 0.697035 | 7.3:+9627220 | MS.gene24698:CDS |
| CAACAACCACGTGATCAAAG+GGG | 0.713289 | 7.3:+9627191 | MS.gene24698:CDS |
| TTGGAGTAGAGGACTACATG+GGG | 0.733565 | 7.3:+9627424 | MS.gene24698:CDS |
| GACACGGTGGTTGATGACGG+CGG | 0.738900 | 7.3:+9627384 | MS.gene24698:CDS |
| AGCATGCGATAGAACAACTG+CGG | 0.738953 | 7.3:+9624956 | MS.gene24698:CDS |
| GTCGGTGTTTGAGGACACGG+TGG | 0.755614 | 7.3:+9627371 | MS.gene24698:CDS |
| TTGGTCCCTAGAGTGCAACG+GGG | 0.825259 | 7.3:-9627535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr7.3:9626791-9626810 | MS.gene24698:intron | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr7.3:9626790-9626809 | MS.gene24698:intron | 10.0% |
| !! | AAACTCTTTAAATTAATACT+CGG | - | chr7.3:9626943-9626962 | None:intergenic | 15.0% |
| !! | CATACAAATATCAAATTAAT+TGG | - | chr7.3:9625429-9625448 | None:intergenic | 15.0% |
| !!! | ACTTTTGAATGATTTTTTTA+AGG | + | chr7.3:9625898-9625917 | MS.gene24698:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr7.3:9626867-9626886 | MS.gene24698:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr7.3:9626905-9626924 | None:intergenic | 15.0% |
| !!! | TTAAAAGTTTTTCTTTTTGA+AGG | + | chr7.3:9626987-9627006 | MS.gene24698:intron | 15.0% |
| !! | AAATGTTAACAAATGTCTAT+AGG | - | chr7.3:9626306-9626325 | None:intergenic | 20.0% |
| !! | AACCAAACATAAAATAGATT+AGG | - | chr7.3:9625263-9625282 | None:intergenic | 20.0% |
| !! | ACCAAACATAAAATAGATTA+GGG | - | chr7.3:9625262-9625281 | None:intergenic | 20.0% |
| !! | ACTATACATACTAAACAAAA+AGG | + | chr7.3:9626535-9626554 | MS.gene24698:intron | 20.0% |
| !! | AGTAAACCTAAAAGAATTAA+CGG | - | chr7.3:9625144-9625163 | None:intergenic | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr7.3:9626428-9626447 | MS.gene24698:intron | 20.0% |
| !! | GAAATGAAATTTGTATTTCA+GGG | + | chr7.3:9625452-9625471 | MS.gene24698:intron | 20.0% |
| !! | GATGATTTAGAAATATTGAT+AGG | + | chr7.3:9627125-9627144 | MS.gene24698:intron | 20.0% |
| !! | TAAATTAATAATGTCAGGAT+CGG | + | chr7.3:9626433-9626452 | MS.gene24698:intron | 20.0% |
| !! | TAGAACCATTAATATGTATA+TGG | + | chr7.3:9625719-9625738 | MS.gene24698:intron | 20.0% |
| !! | TGAAATGAAATTTGTATTTC+AGG | + | chr7.3:9625451-9625470 | MS.gene24698:intron | 20.0% |
| !! | TTAATGATACAAAAAATGCT+AGG | + | chr7.3:9625174-9625193 | MS.gene24698:CDS | 20.0% |
| !!! | AAAAAGGCATATTTATGATA+CGG | + | chr7.3:9626551-9626570 | MS.gene24698:intron | 20.0% |
| !!! | CTCATATATATGTTTGATTT+TGG | - | chr7.3:9625385-9625404 | None:intergenic | 20.0% |
| !!! | TAATCTATTTTATGTTTGGT+TGG | + | chr7.3:9625262-9625281 | MS.gene24698:intron | 20.0% |
| ! | AAACGACTCTTTCAATTTAA+TGG | - | chr7.3:9626228-9626247 | None:intergenic | 25.0% |
| ! | AATAAGGAATGAATGTTGAT+TGG | - | chr7.3:9625774-9625793 | None:intergenic | 25.0% |
| ! | ATTTATAGAGTTTCTACTGT+AGG | - | chr7.3:9626418-9626437 | None:intergenic | 25.0% |
| ! | CACTTCCATATACATATTAA+TGG | - | chr7.3:9625727-9625746 | None:intergenic | 25.0% |
| ! | CATTAATATGTATATGGAAG+TGG | + | chr7.3:9625725-9625744 | MS.gene24698:intron | 25.0% |
| ! | CCACTAACAAAAAAAAAAGA+GGG | + | chr7.3:9626168-9626187 | MS.gene24698:intron | 25.0% |
| ! | TCCACTAACAAAAAAAAAAG+AGG | + | chr7.3:9626167-9626186 | MS.gene24698:intron | 25.0% |
| ! | TGAAAACGAGAAATATCAAT+AGG | - | chr7.3:9624603-9624622 | None:intergenic | 25.0% |
| !! | AGAGATCCCTTTATAATTTT+CGG | - | chr7.3:9626818-9626837 | None:intergenic | 25.0% |
| !! | GAGAACAGAAAATTGATTTA+TGG | + | chr7.3:9625672-9625691 | MS.gene24698:intron | 25.0% |
| !!! | AAGAATAGTTCTAAGAAGTA+CGG | + | chr7.3:9625545-9625564 | MS.gene24698:CDS | 25.0% |
| !!! | AAGTTTTTCTTTTTGAAGGA+AGG | + | chr7.3:9626991-9627010 | MS.gene24698:intron | 25.0% |
| !!! | TTTGTTTTTTGCAAGAATGT+TGG | - | chr7.3:9624784-9624803 | None:intergenic | 25.0% |
| AAACATGTCAGTATCAATAC+CGG | - | chr7.3:9624871-9624890 | None:intergenic | 30.0% | |
| AGAGCTTATTAACAAGATGA+AGG | + | chr7.3:9627563-9627582 | MS.gene24698:CDS | 30.0% | |
| ATGAAGGCTATTCTTATTGA+AGG | + | chr7.3:9627579-9627598 | MS.gene24698:CDS | 30.0% | |
| CTTAAGAACATCCATAATGT+CGG | + | chr7.3:9627353-9627372 | MS.gene24698:CDS | 30.0% | |
| CTTATCATTGTTCTTAGAGT+TGG | - | chr7.3:9627262-9627281 | None:intergenic | 30.0% | |
| GTGCATATGTTTCAATGTAT+AGG | + | chr7.3:9627147-9627166 | MS.gene24698:intron | 30.0% | |
| TATGCCTGATGAAAAAACAT+GGG | + | chr7.3:9624908-9624927 | MS.gene24698:CDS | 30.0% | |
| TATTTATGATACGGTGTCTT+TGG | + | chr7.3:9626560-9626579 | MS.gene24698:intron | 30.0% | |
| TGTTAATAAGCTCTTGCATT+TGG | - | chr7.3:9627557-9627576 | None:intergenic | 30.0% | |
| TTGGGACCGAAAATTATAAA+GGG | + | chr7.3:9626809-9626828 | MS.gene24698:intron | 30.0% | |
| ! | ATGCAGTTTTTGCAAAATCA+TGG | - | chr7.3:9625325-9625344 | None:intergenic | 30.0% |
| ! | CATTTAAGATGAGATAGAGA+GGG | - | chr7.3:9626004-9626023 | None:intergenic | 30.0% |
| ! | GCCCTAATCTATTTTATGTT+TGG | + | chr7.3:9625258-9625277 | MS.gene24698:intron | 30.0% |
| ! | GGTTTTTCTTTTCACGAATA+AGG | - | chr7.3:9625790-9625809 | None:intergenic | 30.0% |
| ! | GTTACTCCGTTAATTCTTTT+AGG | + | chr7.3:9625135-9625154 | MS.gene24698:CDS | 30.0% |
| ! | TCATTTAAGATGAGATAGAG+AGG | - | chr7.3:9626005-9626024 | None:intergenic | 30.0% |
| !! | AGAATAGTTCTAAGAAGTAC+GGG | + | chr7.3:9625546-9625565 | MS.gene24698:CDS | 30.0% |
| !! | ATTTTGTAGTTTGTGAAGTG+AGG | - | chr7.3:9624628-9624647 | None:intergenic | 30.0% |
| !! | CTTTAAAGTTCAAGTCTGTT+TGG | - | chr7.3:9626704-9626723 | None:intergenic | 30.0% |
| !!! | CCCTCTTTTTTTTTTGTTAG+TGG | - | chr7.3:9626171-9626190 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTAGTGGATGAAG+TGG | - | chr7.3:9626162-9626181 | None:intergenic | 30.0% |
| AAAGGAGAAAATAGTGTCTG+TGG | - | chr7.3:9624706-9624725 | None:intergenic | 35.0% | |
| AAATACAACACCTGAGCTAT+TGG | + | chr7.3:9626650-9626669 | MS.gene24698:intron | 35.0% | |
| AAATTGTGATTTGAGAGAGG+TGG | - | chr7.3:9625608-9625627 | None:intergenic | 35.0% | |
| AAGGCTATTCTTATTGAAGG+TGG | + | chr7.3:9627582-9627601 | MS.gene24698:CDS | 35.0% | |
| AATTGTGATTTGAGAGAGGT+GGG | - | chr7.3:9625607-9625626 | None:intergenic | 35.0% | |
| ATCAATTTCCTTGATACACG+AGG | + | chr7.3:9626362-9626381 | MS.gene24698:intron | 35.0% | |
| ATCGTACAAGATTAAGTACC+GGG | + | chr7.3:9625294-9625313 | MS.gene24698:intron | 35.0% | |
| CAAAGGGAAGAAACATATCT+GGG | + | chr7.3:9625091-9625110 | MS.gene24698:CDS | 35.0% | |
| CAATCAAACTGATACCAAGA+GGG | + | chr7.3:9625223-9625242 | MS.gene24698:CDS | 35.0% | |
| CATCGTACAAGATTAAGTAC+CGG | + | chr7.3:9625293-9625312 | MS.gene24698:intron | 35.0% | |
| CCAAAATTGTGATTTGAGAG+AGG | - | chr7.3:9625611-9625630 | None:intergenic | 35.0% | |
| CGACATTATGGATGTTCTTA+AGG | - | chr7.3:9627355-9627374 | None:intergenic | 35.0% | |
| CTATGCCTGATGAAAAAACA+TGG | + | chr7.3:9624907-9624926 | MS.gene24698:CDS | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | + | chr7.3:9626808-9626827 | MS.gene24698:intron | 35.0% | |
| GAAACAAAAGGTCGTAATGT+TGG | + | chr7.3:9624501-9624520 | MS.gene24698:CDS | 35.0% | |
| GATGAAAGATGAGGAAAAAG+AGG | + | chr7.3:9625007-9625026 | MS.gene24698:CDS | 35.0% | |
| GTGTCAAAAATACCCATAGA+TGG | - | chr7.3:9627474-9627493 | None:intergenic | 35.0% | |
| TATGTATATGGAAGTGGAAG+TGG | + | chr7.3:9625731-9625750 | MS.gene24698:intron | 35.0% | |
| TCAATCAAACTGATACCAAG+AGG | + | chr7.3:9625222-9625241 | MS.gene24698:CDS | 35.0% | |
| TTAAGGATGATGTCAAACCA+GGG | - | chr7.3:9627338-9627357 | None:intergenic | 35.0% | |
| ! | AGGAATGAATGTTGATTGGT+CGG | - | chr7.3:9625770-9625789 | None:intergenic | 35.0% |
| ! | ATGATGATGATGATGTGTTG+TGG | - | chr7.3:9624677-9624696 | None:intergenic | 35.0% |
| ! | ATTTTTGACACCATAAGGGA+TGG | + | chr7.3:9627483-9627502 | MS.gene24698:CDS | 35.0% |
| ! | CCTCTCTCAAATCACAATTT+TGG | + | chr7.3:9625608-9625627 | MS.gene24698:CDS | 35.0% |
| ! | TGATAAGCACTTTTCAGACA+TGG | + | chr7.3:9627275-9627294 | MS.gene24698:CDS | 35.0% |
| ! | TTTTGATCTGAGGATAGGAT+GGG | - | chr7.3:9624652-9624671 | None:intergenic | 35.0% |
| !! | GATTTTGATGAAAGGAGTGT+GGG | - | chr7.3:9624736-9624755 | None:intergenic | 35.0% |
| !! | GGGTATTTTTGACACCATAA+GGG | + | chr7.3:9627479-9627498 | MS.gene24698:CDS | 35.0% |
| !! | TGAGACTCGATTTTGATGAA+AGG | - | chr7.3:9624744-9624763 | None:intergenic | 35.0% |
| !! | TGGGTATTTTTGACACCATA+AGG | + | chr7.3:9627478-9627497 | MS.gene24698:CDS | 35.0% |
| !! | TGTTCCATGATTTGTTGCAA+CGG | - | chr7.3:9624816-9624835 | None:intergenic | 35.0% |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr7.3:9626877-9626896 | MS.gene24698:intron | 35.0% |
| AAATGCTAGGTCTTCACAAG+TGG | + | chr7.3:9625187-9625206 | MS.gene24698:CDS | 40.0% | |
| AAATGCTCCATAAGTCCTCT+TGG | - | chr7.3:9627238-9627257 | None:intergenic | 40.0% | |
| AATAACTGCAGCGGGATTAA+TGG | + | chr7.3:9625508-9625527 | MS.gene24698:CDS | 40.0% | |
| ACAAAAGGTCGTAATGTTGG+TGG | + | chr7.3:9624504-9624523 | MS.gene24698:CDS | 40.0% | |
| ATGTCGACGGTTGAAACAAA+AGG | + | chr7.3:9624489-9624508 | MS.gene24698:CDS | 40.0% | |
| CAAAGTAACCTCGTGTATCA+AGG | - | chr7.3:9626373-9626392 | None:intergenic | 40.0% | |
| CATGACCTTTCTTATGTCCA+AGG | + | chr7.3:9627302-9627321 | MS.gene24698:CDS | 40.0% | |
| CTTAAGGATGATGTCAAACC+AGG | - | chr7.3:9627339-9627358 | None:intergenic | 40.0% | |
| CTTATTGCATCCAATAGCTC+AGG | - | chr7.3:9626663-9626682 | None:intergenic | 40.0% | |
| CTTGATACACGAGGTTACTT+TGG | + | chr7.3:9626371-9626390 | MS.gene24698:intron | 40.0% | |
| GCAAAGGGAAGAAACATATC+TGG | + | chr7.3:9625090-9625109 | MS.gene24698:CDS | 40.0% | |
| TAAATCCGCACGCAATTGTA+AGG | - | chr7.3:9626129-9626148 | None:intergenic | 40.0% | |
| TAGAACCTTACAATTGCGTG+CGG | + | chr7.3:9626121-9626140 | MS.gene24698:intron | 40.0% | |
| TCAACAACCACGTGATCAAA+GGG | + | chr7.3:9627190-9627209 | MS.gene24698:CDS | 40.0% | |
| TGAAGGTGGAAAAACATACG+AGG | + | chr7.3:9627596-9627615 | MS.gene24698:CDS | 40.0% | |
| TGATGAAAAAACATGGGTGG+TGG | + | chr7.3:9624914-9624933 | MS.gene24698:CDS | 40.0% | |
| TGCAAAATCATGGTGATTCC+CGG | - | chr7.3:9625315-9625334 | None:intergenic | 40.0% | |
| TGTTGAGGATGTTGTTCCTT+TGG | + | chr7.3:9625043-9625062 | MS.gene24698:CDS | 40.0% | |
| ! | ATCCATAATGTCGGTGTTTG+AGG | + | chr7.3:9627362-9627381 | MS.gene24698:CDS | 40.0% |
| ! | GCTTACATCTAAAACCCTCT+TGG | - | chr7.3:9625240-9625259 | None:intergenic | 40.0% |
| ! | GCTTGTGTTGATGAAAGATG+AGG | + | chr7.3:9624998-9625017 | MS.gene24698:CDS | 40.0% |
| ! | TATGGCCTTGGACATAAGAA+AGG | - | chr7.3:9627310-9627329 | None:intergenic | 40.0% |
| ! | TTATTACCCTCACTGATTGC+CGG | + | chr7.3:9625570-9625589 | MS.gene24698:CDS | 40.0% |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr7.3:9626878-9626897 | MS.gene24698:intron | 40.0% |
| !! | CGATTTTGATGAAAGGAGTG+TGG | - | chr7.3:9624737-9624756 | None:intergenic | 40.0% |
| !! | GTTTTGATCTGAGGATAGGA+TGG | - | chr7.3:9624653-9624672 | None:intergenic | 40.0% |
| !! | TGGAGTTTTGATCTGAGGAT+AGG | - | chr7.3:9624657-9624676 | None:intergenic | 40.0% |
| !! | TGTTGTGGAGTTTTGATCTG+AGG | - | chr7.3:9624662-9624681 | None:intergenic | 40.0% |
| !!! | ACCACCCATGTTTTTTCATC+AGG | - | chr7.3:9624915-9624934 | None:intergenic | 40.0% |
| AACAACCACGTGATCAAAGG+GGG | + | chr7.3:9627192-9627211 | MS.gene24698:CDS | 45.0% | |
| AAGAAACATATCTGGGAGCG+TGG | + | chr7.3:9625098-9625117 | MS.gene24698:CDS | 45.0% | |
| AGCATGCGATAGAACAACTG+CGG | + | chr7.3:9624956-9624975 | MS.gene24698:CDS | 45.0% | |
| ATCTTGTTCCTGGTCGCAAA+GGG | + | chr7.3:9625075-9625094 | MS.gene24698:CDS | 45.0% | |
| ATGAACTGAACCGTAACACG+TGG | + | chr7.3:9624835-9624854 | MS.gene24698:CDS | 45.0% | |
| ATTTGGTCCCTAGAGTGCAA+CGG | - | chr7.3:9627540-9627559 | None:intergenic | 45.0% | |
| CAAAGGGGGAGAAAGTCTTT+GGG | + | chr7.3:9627206-9627225 | MS.gene24698:CDS | 45.0% | |
| CAACAACCACGTGATCAAAG+GGG | + | chr7.3:9627191-9627210 | MS.gene24698:CDS | 45.0% | |
| CACTCCGTTGCAACAAATCA+TGG | + | chr7.3:9624809-9624828 | MS.gene24698:CDS | 45.0% | |
| CAGAGTAGGATTAAGCTGTG+TGG | + | chr7.3:9625482-9625501 | MS.gene24698:CDS | 45.0% | |
| CTCAACAACCACGTGATCAA+AGG | + | chr7.3:9627189-9627208 | MS.gene24698:CDS | 45.0% | |
| CTTTGATCACGTGGTTGTTG+AGG | - | chr7.3:9627191-9627210 | None:intergenic | 45.0% | |
| GAACTAGCCAAGAGGACTTA+TGG | + | chr7.3:9627228-9627247 | MS.gene24698:CDS | 45.0% | |
| GCAAGCAAAACTTTGCGTAC+AGG | + | chr7.3:9625856-9625875 | MS.gene24698:intron | 45.0% | |
| GCCTGATGAAAAAACATGGG+TGG | + | chr7.3:9624911-9624930 | MS.gene24698:CDS | 45.0% | |
| GTCCTCAAACACCGACATTA+TGG | - | chr7.3:9627367-9627386 | None:intergenic | 45.0% | |
| GTTGGAGTAGAGGACTACAT+GGG | + | chr7.3:9627423-9627442 | MS.gene24698:CDS | 45.0% | |
| TACGATCTTGCCACGTGTTA+CGG | - | chr7.3:9624848-9624867 | None:intergenic | 45.0% | |
| TCAAAGGGGGAGAAAGTCTT+TGG | + | chr7.3:9627205-9627224 | MS.gene24698:CDS | 45.0% | |
| TGTCAAACCAGGGTTCTCTA+TGG | - | chr7.3:9627328-9627347 | None:intergenic | 45.0% | |
| TGTGCTTCGGTTCATGGTTT+GGG | + | chr7.3:9627447-9627466 | MS.gene24698:CDS | 45.0% | |
| TTCAGGGTTGTAAGCAGAGT+AGG | + | chr7.3:9625468-9625487 | MS.gene24698:intron | 45.0% | |
| TTGACACCATAAGGGATGGA+AGG | + | chr7.3:9627487-9627506 | MS.gene24698:CDS | 45.0% | |
| TTGGAGTAGAGGACTACATG+GGG | + | chr7.3:9627424-9627443 | MS.gene24698:CDS | 45.0% | |
| ! | AATGTCGGTGTTTGAGGACA+CGG | + | chr7.3:9627368-9627387 | MS.gene24698:CDS | 45.0% |
| ! | AGGAGTGTGGGATGTAAGAA+AGG | - | chr7.3:9624724-9624743 | None:intergenic | 45.0% |
| ! | ATCTAGCCTTCCATCCCTTA+TGG | - | chr7.3:9627496-9627515 | None:intergenic | 45.0% |
| ! | CATGGTTTGGGACCATCTAT+GGG | + | chr7.3:9627459-9627478 | MS.gene24698:CDS | 45.0% |
| ! | GGAGAATGTTGTTGCTGTTG+AGG | + | chr7.3:9625028-9625047 | MS.gene24698:CDS | 45.0% |
| ! | TCATGGTTTGGGACCATCTA+TGG | + | chr7.3:9627458-9627477 | MS.gene24698:CDS | 45.0% |
| !! | TTCGCGAAAGGAAGCACTTA+TGG | + | chr7.3:9626590-9626609 | MS.gene24698:intron | 45.0% |
| AAATTTGTCCGGTCCCGACT+TGG | - | chr7.3:9626894-9626913 | None:intergenic | 50.0% | |
| AACACGTGGCAAGATCGTAC+CGG | + | chr7.3:9624849-9624868 | MS.gene24698:CDS | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | - | chr7.3:9626893-9626912 | None:intergenic | 50.0% | |
| ACAAGATCCTCGATCGCCAA+AGG | - | chr7.3:9625062-9625081 | None:intergenic | 50.0% | |
| AGTGCTTCCTTTCGCGAAAC+AGG | - | chr7.3:9626588-9626607 | None:intergenic | 50.0% | |
| GATCACGTGGTTGTTGAGGA+TGG | - | chr7.3:9627187-9627206 | None:intergenic | 50.0% | |
| GATCTTGTTCCTGGTCGCAA+AGG | + | chr7.3:9625074-9625093 | MS.gene24698:CDS | 50.0% | |
| GCAACAAGAGGTTGGAGTAG+AGG | + | chr7.3:9627413-9627432 | MS.gene24698:CDS | 50.0% | |
| GGCAAGATGCAACAAGAGGT+TGG | + | chr7.3:9627405-9627424 | MS.gene24698:CDS | 50.0% | |
| GGTTGGAGTAGAGGACTACA+TGG | + | chr7.3:9627422-9627441 | MS.gene24698:CDS | 50.0% | |
| GTGTGCTTCGGTTCATGGTT+TGG | + | chr7.3:9627446-9627465 | MS.gene24698:CDS | 50.0% | |
| GTGTGGAGCAATAACTGCAG+CGG | + | chr7.3:9625499-9625518 | MS.gene24698:CDS | 50.0% | |
| TACACTACCAGCTGCAGAGT+CGG | - | chr7.3:9625811-9625830 | None:intergenic | 50.0% | |
| TGTGGAGCAATAACTGCAGC+GGG | + | chr7.3:9625500-9625519 | MS.gene24698:CDS | 50.0% | |
| TGTTGTTCCTTTGGCGATCG+AGG | + | chr7.3:9625052-9625071 | MS.gene24698:CDS | 50.0% | |
| TGTTTCTTCCCTTTGCGACC+AGG | - | chr7.3:9625086-9625105 | None:intergenic | 50.0% | |
| TTTCTCCCCCTTTGATCACG+TGG | - | chr7.3:9627200-9627219 | None:intergenic | 50.0% | |
| TTTGGTCCCTAGAGTGCAAC+GGG | - | chr7.3:9627539-9627558 | None:intergenic | 50.0% | |
| ! | AGAAAAACCGACTCTGCAGC+TGG | + | chr7.3:9625801-9625820 | MS.gene24698:intron | 50.0% |
| ! | GTCTTTGGGAACTAGCCAAG+AGG | + | chr7.3:9627220-9627239 | MS.gene24698:CDS | 50.0% |
| ! | TTGGTGGCACAGAATGTAGC+TGG | + | chr7.3:9624520-9624539 | MS.gene24698:CDS | 50.0% |
| ! | TTTGGAGCCTGTTTCGCGAA+AGG | + | chr7.3:9626578-9626597 | MS.gene24698:intron | 50.0% |
| AAAGCCATTCGTGGTGGCAC+TGG | + | chr7.3:9624546-9624565 | MS.gene24698:CDS | 55.0% | |
| AATGCCAGTGCCACCACGAA+TGG | - | chr7.3:9624553-9624572 | None:intergenic | 55.0% | |
| ACCAGGGTTCTCTATGGCCT+TGG | - | chr7.3:9627322-9627341 | None:intergenic | 55.0% | |
| AGCTGGTGCAAAGCCATTCG+TGG | + | chr7.3:9624537-9624556 | MS.gene24698:CDS | 55.0% | |
| AGTGGACCGGCAATCAGTGA+GGG | - | chr7.3:9625579-9625598 | None:intergenic | 55.0% | |
| ATCCATCCCCGTTGCACTCT+AGG | + | chr7.3:9627529-9627548 | MS.gene24698:CDS | 55.0% | |
| ATGGGGTGTGCTTCGGTTCA+TGG | + | chr7.3:9627441-9627460 | MS.gene24698:CDS | 55.0% | |
| GCGATCGAGGATCTTGTTCC+TGG | + | chr7.3:9625065-9625084 | MS.gene24698:CDS | 55.0% | |
| GGACTACATGGGGTGTGCTT+CGG | + | chr7.3:9627434-9627453 | MS.gene24698:CDS | 55.0% | |
| TCCAAGGCCATAGAGAACCC+TGG | + | chr7.3:9627318-9627337 | MS.gene24698:CDS | 55.0% | |
| TCCATCCCCGTTGCACTCTA+GGG | + | chr7.3:9627530-9627549 | MS.gene24698:CDS | 55.0% | |
| TGAGAGAGGTGGGTCAAGAG+TGG | - | chr7.3:9625597-9625616 | None:intergenic | 55.0% | |
| TGGTGCAAAGCCATTCGTGG+TGG | + | chr7.3:9624540-9624559 | MS.gene24698:CDS | 55.0% | |
| TTGGTCCCTAGAGTGCAACG+GGG | - | chr7.3:9627538-9627557 | None:intergenic | 55.0% | |
| !! | GAGGACACGGTGGTTGATGA+CGG | + | chr7.3:9627381-9627400 | MS.gene24698:CDS | 55.0% |
| ACATTGGCCCAAGTCGGGAC+CGG | + | chr7.3:9626883-9626902 | MS.gene24698:intron | 60.0% | |
| CGGCGGCAAGATGCAACAAG+AGG | + | chr7.3:9627401-9627420 | MS.gene24698:CDS | 60.0% | |
| GAGGTGGGTCAAGAGTGGAC+CGG | - | chr7.3:9625592-9625611 | None:intergenic | 60.0% | |
| GAGTGGACCGGCAATCAGTG+AGG | - | chr7.3:9625580-9625599 | None:intergenic | 60.0% | |
| TCCCTAGAGTGCAACGGGGA+TGG | - | chr7.3:9627534-9627553 | None:intergenic | 60.0% | |
| ! | GTCGGTGTTTGAGGACACGG+TGG | + | chr7.3:9627371-9627390 | MS.gene24698:CDS | 60.0% |
| !! | GACACGGTGGTTGATGACGG+CGG | + | chr7.3:9627384-9627403 | MS.gene24698:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 9624489 | 9627626 | 9624489 | ID=MS.gene24698 |
| chr7.3 | mRNA | 9624489 | 9627626 | 9624489 | ID=MS.gene24698.t1;Parent=MS.gene24698 |
| chr7.3 | exon | 9624489 | 9625253 | 9624489 | ID=MS.gene24698.t1.exon1;Parent=MS.gene24698.t1 |
| chr7.3 | CDS | 9624489 | 9625253 | 9624489 | ID=cds.MS.gene24698.t1;Parent=MS.gene24698.t1 |
| chr7.3 | exon | 9625473 | 9625629 | 9625473 | ID=MS.gene24698.t1.exon2;Parent=MS.gene24698.t1 |
| chr7.3 | CDS | 9625473 | 9625629 | 9625473 | ID=cds.MS.gene24698.t1;Parent=MS.gene24698.t1 |
| chr7.3 | exon | 9627169 | 9627626 | 9627169 | ID=MS.gene24698.t1.exon3;Parent=MS.gene24698.t1 |
| chr7.3 | CDS | 9627169 | 9627626 | 9627169 | ID=cds.MS.gene24698.t1;Parent=MS.gene24698.t1 |
| Gene Sequence |
| Protein sequence |
