Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24738.t1 | XP_003625810.1 | 97.1 | 279 | 8 | 0 | 1 | 279 | 126 | 404 | 8.10E-101 | 377.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24738.t1 | Q9SJN0 | 50.0 | 298 | 85 | 6 | 1 | 275 | 155 | 411 | 5.4e-45 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24738.t1 | G7L631 | 97.1 | 279 | 8 | 0 | 1 | 279 | 126 | 404 | 5.8e-101 | 377.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050326 | MS.gene24738 | 0.925538 | 1.60E-90 | -1.69E-46 |
| MS.gene050328 | MS.gene24738 | 0.946408 | 4.89E-105 | -1.69E-46 |
| MS.gene054614 | MS.gene24738 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene24738 | 0.80035 | 1.50E-48 | -1.69E-46 |
| MS.gene058382 | MS.gene24738 | 0.853925 | 1.73E-61 | -1.69E-46 |
| MS.gene05926 | MS.gene24738 | 0.804905 | 1.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 125 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTCGGGTGGTCAATT+TGG | 0.166727 | 7.4:+7556028 | MS.gene24738:CDS |
| GTTGGAGAGCCTTCGGGTTC+GGG | 0.231478 | 7.4:+7555824 | MS.gene24738:CDS |
| CAGGCTGCTTCATTTGCTAT+TGG | 0.239497 | 7.4:+7555734 | MS.gene24738:CDS |
| AGTTGGAGAGCCTTCGGGTT+CGG | 0.262820 | 7.4:+7555823 | MS.gene24738:CDS |
| GATGACATTGGAGGATTTCT+TGG | 0.268533 | 7.4:+7555571 | MS.gene24738:CDS |
| TGGTTAAAGCAGGGGTAGTT+AGG | 0.281516 | 7.4:+7555591 | MS.gene24738:CDS |
| GCCATTGTAGAGTTGTTATT+AGG | 0.296465 | 7.4:-7555710 | None:intergenic |
| CCGCCGCCAGCGGTTTGTTA+TGG | 0.308148 | 7.4:+7555899 | MS.gene24738:CDS |
| TGTGGCAGTGGCACAAACTA+TGG | 0.315000 | 7.4:+7555958 | MS.gene24738:CDS |
| ACCCCTCGACAACCGACTTT+TGG | 0.322363 | 7.4:+7555545 | MS.gene24738:CDS |
| ACCTGTTAGTCCGGTTTCTT+CGG | 0.327709 | 7.4:+7555991 | MS.gene24738:CDS |
| AAAACTCGGGTGGTCAATTT+GGG | 0.341515 | 7.4:+7556029 | MS.gene24738:CDS |
| ACACTGCGGCGTAATGCTGC+TGG | 0.344613 | 7.4:-7555685 | None:intergenic |
| TTACCTCATGCAGTGTTTAG+AGG | 0.347444 | 7.4:+7556725 | MS.gene24738:intron |
| GGAAAACTGTTGAACAAGTT+TGG | 0.348644 | 7.4:+7555456 | None:intergenic |
| CTCTCCACCACCCTTTCAAC+AGG | 0.360473 | 7.4:-7556097 | None:intergenic |
| CACTGCGGCGTAATGCTGCT+GGG | 0.364765 | 7.4:-7555684 | None:intergenic |
| TGGAGGAGTTGGAGAGCCTT+CGG | 0.365531 | 7.4:+7555817 | MS.gene24738:CDS |
| TCCGAAGAAACCGGACTAAC+AGG | 0.372237 | 7.4:-7555992 | None:intergenic |
| ATTATAGTTTAGACCATCAT+TGG | 0.373341 | 7.4:-7556632 | None:intergenic |
| TTGCTATTGGTGGCGGCGGC+GGG | 0.379794 | 7.4:+7555747 | MS.gene24738:CDS |
| CTTCGGGTTCGGGGTATGTT+GGG | 0.383128 | 7.4:+7555834 | MS.gene24738:CDS |
| CAAACCGCTGGCGGCGGCGG+AGG | 0.394088 | 7.4:-7555893 | None:intergenic |
| ACTGCTGCTGCGGCAGGTGG+TGG | 0.397437 | 7.4:-7555647 | None:intergenic |
| AATGGAGGGGCGGGCAGTTA+TGG | 0.405922 | 7.4:+7555935 | MS.gene24738:CDS |
| AGAGAATTCTCAACTGAAAC+AGG | 0.410221 | 7.4:+7556473 | MS.gene24738:CDS |
| TTTGCTATTGGTGGCGGCGG+CGG | 0.410743 | 7.4:+7555746 | MS.gene24738:CDS |
| CCGGTTTCTTCGGATGGGAT+TGG | 0.415620 | 7.4:+7556001 | MS.gene24738:CDS |
| GGAGGAGTTGGAGAGCCTTC+GGG | 0.416356 | 7.4:+7555818 | MS.gene24738:CDS |
| CCTTCGGGTTCGGGGTATGT+TGG | 0.416821 | 7.4:+7555833 | MS.gene24738:CDS |
| CACCTCCCTGTGCCACCGTT+TGG | 0.419295 | 7.4:-7555796 | None:intergenic |
| AAGATCTAGAGCCAGAAAAC+AGG | 0.420885 | 7.4:+7556159 | MS.gene24738:CDS |
| CGGCGTAATGCTGCTGGGGC+CGG | 0.426351 | 7.4:-7555679 | None:intergenic |
| GCACAGGGAGGTGGAGGAGT+TGG | 0.427569 | 7.4:+7555806 | MS.gene24738:CDS |
| GTTAGTCCGGTTTCTTCGGA+TGG | 0.429323 | 7.4:+7555995 | MS.gene24738:CDS |
| CCCTGTGCCACCGTTTGGTA+TGG | 0.438711 | 7.4:-7555791 | None:intergenic |
| GGTGGTGGTGCTATGGCAAC+CGG | 0.443970 | 7.4:-7555632 | None:intergenic |
| GAGGGAGAGTGGTGAATGGA+GGG | 0.444211 | 7.4:+7555921 | MS.gene24738:CDS |
| GATGGGCGGACCTGTTAGTC+CGG | 0.445248 | 7.4:+7555982 | MS.gene24738:CDS |
| GCTGCTTCATTTGCTATTGG+TGG | 0.446852 | 7.4:+7555737 | MS.gene24738:CDS |
| ATTGATATGAATGGTTTAAG+AGG | 0.448244 | 7.4:+7556052 | MS.gene24738:CDS |
| GGAAGAAAGAGGATGGTTGA+TGG | 0.453215 | 7.4:+7556073 | MS.gene24738:CDS |
| GAGGATTTCTTGGTTAAAGC+AGG | 0.456229 | 7.4:+7555581 | MS.gene24738:CDS |
| GATGACACTGCTGCTGCGGC+AGG | 0.456822 | 7.4:-7555653 | None:intergenic |
| TGGTGGAGAGAAGGCAGAGG+AGG | 0.457363 | 7.4:+7556110 | MS.gene24738:CDS |
| GACTAGGGATAGTATAGGTA+CGG | 0.462211 | 7.4:+7555865 | MS.gene24738:CDS |
| GCCATACCAAACGGTGGCAC+AGG | 0.467096 | 7.4:+7555790 | MS.gene24738:CDS |
| ACGGTGGCACAGGGAGGTGG+AGG | 0.470179 | 7.4:+7555800 | MS.gene24738:CDS |
| TAACAAACCGCTGGCGGCGG+CGG | 0.477710 | 7.4:-7555896 | None:intergenic |
| CCGCCAGCGGTTTGTTATGG+AGG | 0.477954 | 7.4:+7555902 | MS.gene24738:CDS |
| CAAACGGTGGCACAGGGAGG+TGG | 0.478151 | 7.4:+7555797 | MS.gene24738:CDS |
| GGTTGATGGTCCTGTTGAAA+GGG | 0.481262 | 7.4:+7556087 | MS.gene24738:CDS |
| CCAATCCCATCCGAAGAAAC+CGG | 0.481309 | 7.4:-7556001 | None:intergenic |
| GGTTAAAGCAGGGGTAGTTA+GGG | 0.481908 | 7.4:+7555592 | MS.gene24738:CDS |
| AGAGAGGAGAAGAAGACAAC+AGG | 0.484243 | 7.4:+7556606 | MS.gene24738:CDS |
| TTAGTCCGGTTTCTTCGGAT+GGG | 0.486374 | 7.4:+7555996 | MS.gene24738:CDS |
| GACACTGCTGCTGCGGCAGG+TGG | 0.491945 | 7.4:-7555650 | None:intergenic |
| AGGGAGAGTGGTGAATGGAG+GGG | 0.491999 | 7.4:+7555922 | MS.gene24738:CDS |
| GAGAGTGGTGAATGGAGGGG+CGG | 0.497049 | 7.4:+7555925 | MS.gene24738:CDS |
| AGAGTGGTGAATGGAGGGGC+GGG | 0.502580 | 7.4:+7555926 | MS.gene24738:CDS |
| AGTGGCACAAACTATGGGGA+TGG | 0.502987 | 7.4:+7555964 | MS.gene24738:CDS |
| CAATTTGGGATTGATATGAA+TGG | 0.505237 | 7.4:+7556043 | MS.gene24738:CDS |
| TGCGGCAGGTGGTGGTGCTA+TGG | 0.506524 | 7.4:-7555639 | None:intergenic |
| GGGTGGTGGAGAGAAGGCAG+AGG | 0.506953 | 7.4:+7556107 | MS.gene24738:CDS |
| GGGCAGTTATGGTGTGGCAG+TGG | 0.507642 | 7.4:+7555946 | MS.gene24738:CDS |
| GGAGGGAGAGTGGTGAATGG+AGG | 0.509570 | 7.4:+7555920 | MS.gene24738:CDS |
| CCATAACAAACCGCTGGCGG+CGG | 0.510979 | 7.4:-7555899 | None:intergenic |
| AGACAACAGGTAACCAATGA+TGG | 0.512321 | 7.4:+7556619 | MS.gene24738:CDS |
| CAACATTGTTGATGTTGTGA+TGG | 0.520957 | 7.4:-7555505 | None:intergenic |
| GTGGCAGTGGCACAAACTAT+GGG | 0.520968 | 7.4:+7555959 | MS.gene24738:CDS |
| CGCCAAAAGTCGGTTGTCGA+GGG | 0.522444 | 7.4:-7555547 | None:intergenic |
| TATGGAGGGAGAGTGGTGAA+TGG | 0.528806 | 7.4:+7555917 | MS.gene24738:CDS |
| CGCCAGCGGTTTGTTATGGA+GGG | 0.528969 | 7.4:+7555903 | MS.gene24738:CDS |
| GCTTCATTTGCTATTGGTGG+CGG | 0.529772 | 7.4:+7555740 | MS.gene24738:CDS |
| ACTAGGGATAGTATAGGTAC+GGG | 0.531284 | 7.4:+7555866 | MS.gene24738:CDS |
| AGAAACTGAGAGGCTTAAGA+AGG | 0.532363 | 7.4:+7556790 | MS.gene24738:CDS |
| TAACAACTCTACAATGGCTC+AGG | 0.534100 | 7.4:+7555715 | MS.gene24738:CDS |
| TGTTGGGAATGGTAAGACTA+GGG | 0.535160 | 7.4:+7555850 | MS.gene24738:CDS |
| TCATTTGCTATTGGTGGCGG+CGG | 0.547319 | 7.4:+7555743 | MS.gene24738:CDS |
| TTTAAGAGGAAGAAAGAGGA+TGG | 0.548041 | 7.4:+7556066 | MS.gene24738:CDS |
| TCGCCAAAAGTCGGTTGTCG+AGG | 0.549884 | 7.4:-7555548 | None:intergenic |
| TTGAAAGGGTGGTGGAGAGA+AGG | 0.555209 | 7.4:+7556101 | MS.gene24738:CDS |
| GTGGCACAAACTATGGGGAT+GGG | 0.557884 | 7.4:+7555965 | MS.gene24738:CDS |
| GGAACAACAGTCTGGTATGC+CGG | 0.558038 | 7.4:+7555613 | MS.gene24738:CDS |
| CTCCCTCCATAACAAACCGC+TGG | 0.558325 | 7.4:-7555905 | None:intergenic |
| GTAGTTAGGGAACAACAGTC+TGG | 0.560019 | 7.4:+7555605 | MS.gene24738:CDS |
| TTCTCAACTGAAACAGGCAC+TGG | 0.564684 | 7.4:+7556479 | MS.gene24738:CDS |
| TGGTTGATGGTCCTGTTGAA+AGG | 0.565970 | 7.4:+7556086 | MS.gene24738:CDS |
| GGTTCGGGGTATGTTGGGAA+TGG | 0.567692 | 7.4:+7555839 | MS.gene24738:CDS |
| CAGCAGCAGTGTCATCTCAC+CGG | 0.569711 | 7.4:+7555660 | MS.gene24738:CDS |
| ATGGTTTAAGAGGAAGAAAG+AGG | 0.570839 | 7.4:+7556062 | MS.gene24738:CDS |
| TTGGAGAGCCTTCGGGTTCG+GGG | 0.572733 | 7.4:+7555825 | MS.gene24738:CDS |
| TGTGCCACCGTTTGGTATGG+CGG | 0.573089 | 7.4:-7555788 | None:intergenic |
| AGGATTTCTTGGTTAAAGCA+GGG | 0.574066 | 7.4:+7555582 | MS.gene24738:CDS |
| TGATGGTCCTGTTGAAAGGG+TGG | 0.574869 | 7.4:+7556090 | MS.gene24738:CDS |
| TTCTTCAGGCTGAACTAGAG+AGG | 0.575021 | 7.4:+7556590 | MS.gene24738:intron |
| GGTAAGACTAGGGATAGTAT+AGG | 0.577774 | 7.4:+7555860 | MS.gene24738:CDS |
| ACTGCGGCGTAATGCTGCTG+GGG | 0.580500 | 7.4:-7555683 | None:intergenic |
| CCATACCAAACGGTGGCACA+GGG | 0.583912 | 7.4:+7555791 | MS.gene24738:CDS |
| TGGGATTGGAAACGAAAACT+CGG | 0.584083 | 7.4:+7556015 | MS.gene24738:CDS |
| ATGTTGGGAATGGTAAGACT+AGG | 0.593588 | 7.4:+7555849 | MS.gene24738:CDS |
| CGGCGGCGGGAATCTGAATG+TGG | 0.594877 | 7.4:+7555760 | MS.gene24738:CDS |
| GGTTGCGCCGCCATACCAAA+CGG | 0.595175 | 7.4:+7555781 | MS.gene24738:CDS |
| GTATCCTCCGCCGCCGCCAG+CGG | 0.598153 | 7.4:+7555889 | MS.gene24738:CDS |
| AATGTCATCTCGCCAAAAGT+CGG | 0.605885 | 7.4:-7555557 | None:intergenic |
| GTGAGATGACACTGCTGCTG+CGG | 0.608010 | 7.4:-7555657 | None:intergenic |
| TGGTCCTGTTGAAAGGGTGG+TGG | 0.612440 | 7.4:+7556093 | MS.gene24738:CDS |
| CGGTTGTCGAGGGGTAGACT+CGG | 0.617759 | 7.4:-7555537 | None:intergenic |
| TCCTAATAACAACTCTACAA+TGG | 0.627967 | 7.4:+7555709 | MS.gene24738:CDS |
| GCACAAACTATGGGGATGGG+CGG | 0.628434 | 7.4:+7555968 | MS.gene24738:CDS |
| GGTTTGTTATGGAGGGAGAG+TGG | 0.634679 | 7.4:+7555910 | MS.gene24738:CDS |
| CCTCCATAACAAACCGCTGG+CGG | 0.640926 | 7.4:-7555902 | None:intergenic |
| GGATTTCTTGGTTAAAGCAG+GGG | 0.646725 | 7.4:+7555583 | MS.gene24738:CDS |
| AGGGGCGGGCAGTTATGGTG+TGG | 0.648133 | 7.4:+7555940 | MS.gene24738:CDS |
| CCAACATACCCCGAACCCGA+AGG | 0.649040 | 7.4:-7555833 | None:intergenic |
| GCCAAAAGTCGGTTGTCGAG+GGG | 0.657167 | 7.4:-7555546 | None:intergenic |
| GGGATTGGAAACGAAAACTC+GGG | 0.662976 | 7.4:+7556016 | MS.gene24738:CDS |
| TACCAAACGGTGGCACAGGG+AGG | 0.683725 | 7.4:+7555794 | MS.gene24738:CDS |
| TGCGCCGCCATACCAAACGG+TGG | 0.683832 | 7.4:+7555784 | MS.gene24738:CDS |
| TGGCAGTGGCACAAACTATG+GGG | 0.694881 | 7.4:+7555960 | MS.gene24738:CDS |
| ATTGGAAACGAAAACTCGGG+TGG | 0.712637 | 7.4:+7556019 | MS.gene24738:CDS |
| TATGTGAAGAAAACATCACA+TGG | 0.715611 | 7.4:+7556827 | MS.gene24738:CDS |
| AAAGCAAAAGAGAAACTGAG+AGG | 0.716117 | 7.4:+7556780 | MS.gene24738:CDS |
| CTAGGGATAGTATAGGTACG+GGG | 0.720083 | 7.4:+7555867 | MS.gene24738:CDS |
| GTTGTTATTAGGATACACTG+CGG | 0.806201 | 7.4:-7555699 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTAAAGTATAAAATAAT+TGG | - | chr7.4:7556200-7556219 | None:intergenic | 10.0% |
| !! | AAATAATTGGTTAAAATTTC+AGG | - | chr7.4:7556187-7556206 | None:intergenic | 15.0% |
| !! | TAGATTTGATTCAAAATAAA+AGG | - | chr7.4:7556689-7556708 | None:intergenic | 15.0% |
| !! | TATATATACATAAGAATTTG+TGG | - | chr7.4:7556235-7556254 | None:intergenic | 15.0% |
| !! | TTTATATACTATTGAAGAAT+TGG | + | chr7.4:7556277-7556296 | MS.gene24738:intron | 15.0% |
| !!! | CAAACATATTATTTCTAATT+TGG | - | chr7.4:7556335-7556354 | None:intergenic | 15.0% |
| !!! | TAATGTCTTTAAATTTTCTG+TGG | - | chr7.4:7556661-7556680 | None:intergenic | 20.0% |
| ! | ATTATAGTTTAGACCATCAT+TGG | - | chr7.4:7556635-7556654 | None:intergenic | 25.0% |
| ! | ATTGATATGAATGGTTTAAG+AGG | + | chr7.4:7556052-7556071 | MS.gene24738:CDS | 25.0% |
| ! | CTGTAATAGTTAATGTTGTT+TGG | - | chr7.4:7556510-7556529 | None:intergenic | 25.0% |
| ! | GAAAGAAAATTGTGTTACAA+AGG | - | chr7.4:7556397-7556416 | None:intergenic | 25.0% |
| TATGTGAAGAAAACATCACA+TGG | + | chr7.4:7556827-7556846 | MS.gene24738:CDS | 30.0% | |
| TCCTAATAACAACTCTACAA+TGG | + | chr7.4:7555709-7555728 | MS.gene24738:CDS | 30.0% | |
| ! | ATTTTCTTTCTTGCTTATGC+AGG | + | chr7.4:7556407-7556426 | MS.gene24738:intron | 30.0% |
| ! | CAATTTGGGATTGATATGAA+TGG | + | chr7.4:7556043-7556062 | MS.gene24738:CDS | 30.0% |
| ! | TCATGCTTCTTTTATTCTTC+AGG | + | chr7.4:7556576-7556595 | MS.gene24738:intron | 30.0% |
| AAAGCAAAAGAGAAACTGAG+AGG | + | chr7.4:7556780-7556799 | MS.gene24738:CDS | 35.0% | |
| AGAGAATTCTCAACTGAAAC+AGG | + | chr7.4:7556473-7556492 | MS.gene24738:CDS | 35.0% | |
| AGGATTTCTTGGTTAAAGCA+GGG | + | chr7.4:7555582-7555601 | MS.gene24738:CDS | 35.0% | |
| ATGGTTTAAGAGGAAGAAAG+AGG | + | chr7.4:7556062-7556081 | MS.gene24738:CDS | 35.0% | |
| CAACATTGTTGATGTTGTGA+TGG | - | chr7.4:7555508-7555527 | None:intergenic | 35.0% | |
| GTGATTCAACTATACTGACA+AGG | + | chr7.4:7556552-7556571 | MS.gene24738:intron | 35.0% | |
| TTTAAGAGGAAGAAAGAGGA+TGG | + | chr7.4:7556066-7556085 | MS.gene24738:CDS | 35.0% | |
| ! | AATTTCAGGAACCTGTTTTC+TGG | - | chr7.4:7556173-7556192 | None:intergenic | 35.0% |
| ! | GCCATTGTAGAGTTGTTATT+AGG | - | chr7.4:7555713-7555732 | None:intergenic | 35.0% |
| ! | GTTGTTATTAGGATACACTG+CGG | - | chr7.4:7555702-7555721 | None:intergenic | 35.0% |
| AAAACTCGGGTGGTCAATTT+GGG | + | chr7.4:7556029-7556048 | MS.gene24738:CDS | 40.0% | |
| AATGTCATCTCGCCAAAAGT+CGG | - | chr7.4:7555560-7555579 | None:intergenic | 40.0% | |
| ACTAGGGATAGTATAGGTAC+GGG | + | chr7.4:7555866-7555885 | MS.gene24738:CDS | 40.0% | |
| AGAAACTGAGAGGCTTAAGA+AGG | + | chr7.4:7556790-7556809 | MS.gene24738:CDS | 40.0% | |
| AGACAACAGGTAACCAATGA+TGG | + | chr7.4:7556619-7556638 | MS.gene24738:CDS | 40.0% | |
| ATGTTGGGAATGGTAAGACT+AGG | + | chr7.4:7555849-7555868 | MS.gene24738:CDS | 40.0% | |
| GACTAGGGATAGTATAGGTA+CGG | + | chr7.4:7555865-7555884 | MS.gene24738:CDS | 40.0% | |
| GAGGATTTCTTGGTTAAAGC+AGG | + | chr7.4:7555581-7555600 | MS.gene24738:CDS | 40.0% | |
| GATGACATTGGAGGATTTCT+TGG | + | chr7.4:7555571-7555590 | MS.gene24738:CDS | 40.0% | |
| GGATTTCTTGGTTAAAGCAG+GGG | + | chr7.4:7555583-7555602 | MS.gene24738:CDS | 40.0% | |
| GGTAAGACTAGGGATAGTAT+AGG | + | chr7.4:7555860-7555879 | MS.gene24738:CDS | 40.0% | |
| TAACAACTCTACAATGGCTC+AGG | + | chr7.4:7555715-7555734 | MS.gene24738:CDS | 40.0% | |
| TGGGATTGGAAACGAAAACT+CGG | + | chr7.4:7556015-7556034 | MS.gene24738:CDS | 40.0% | |
| TGTTGGGAATGGTAAGACTA+GGG | + | chr7.4:7555850-7555869 | MS.gene24738:CDS | 40.0% | |
| TTACCTCATGCAGTGTTTAG+AGG | + | chr7.4:7556725-7556744 | MS.gene24738:intron | 40.0% | |
| TTTCCTCTAAACACTGCATG+AGG | - | chr7.4:7556731-7556750 | None:intergenic | 40.0% | |
| ! | AAGATCTAGAGCCAGAAAAC+AGG | + | chr7.4:7556159-7556178 | MS.gene24738:CDS | 40.0% |
| ! | CTCTTTTGCTTTCTGAGCTT+TGG | - | chr7.4:7556772-7556791 | None:intergenic | 40.0% |
| ACCTGTTAGTCCGGTTTCTT+CGG | + | chr7.4:7555991-7556010 | MS.gene24738:CDS | 45.0% | |
| AGAGAGGAGAAGAAGACAAC+AGG | + | chr7.4:7556606-7556625 | MS.gene24738:CDS | 45.0% | |
| ATTGGAAACGAAAACTCGGG+TGG | + | chr7.4:7556019-7556038 | MS.gene24738:CDS | 45.0% | |
| CTAGGGATAGTATAGGTACG+GGG | + | chr7.4:7555867-7555886 | MS.gene24738:CDS | 45.0% | |
| GAAAACTCGGGTGGTCAATT+TGG | + | chr7.4:7556028-7556047 | MS.gene24738:CDS | 45.0% | |
| GGAAGAAAGAGGATGGTTGA+TGG | + | chr7.4:7556073-7556092 | MS.gene24738:CDS | 45.0% | |
| GGGATTGGAAACGAAAACTC+GGG | + | chr7.4:7556016-7556035 | MS.gene24738:CDS | 45.0% | |
| GGTTAAAGCAGGGGTAGTTA+GGG | + | chr7.4:7555592-7555611 | MS.gene24738:CDS | 45.0% | |
| GTAGTTAGGGAACAACAGTC+TGG | + | chr7.4:7555605-7555624 | MS.gene24738:CDS | 45.0% | |
| TGGTTAAAGCAGGGGTAGTT+AGG | + | chr7.4:7555591-7555610 | MS.gene24738:CDS | 45.0% | |
| TTAGTCCGGTTTCTTCGGAT+GGG | + | chr7.4:7555996-7556015 | MS.gene24738:CDS | 45.0% | |
| TTCTCAACTGAAACAGGCAC+TGG | + | chr7.4:7556479-7556498 | MS.gene24738:CDS | 45.0% | |
| TTCTTCAGGCTGAACTAGAG+AGG | + | chr7.4:7556590-7556609 | MS.gene24738:intron | 45.0% | |
| ! | GACTTTTGGCGAGATGACAT+TGG | + | chr7.4:7555559-7555578 | MS.gene24738:CDS | 45.0% |
| ! | TTTTGGCGAGATGACATTGG+AGG | + | chr7.4:7555562-7555581 | MS.gene24738:CDS | 45.0% |
| !! | CAGGCTGCTTCATTTGCTAT+TGG | + | chr7.4:7555734-7555753 | MS.gene24738:CDS | 45.0% |
| !! | GCTGCTTCATTTGCTATTGG+TGG | + | chr7.4:7555737-7555756 | MS.gene24738:CDS | 45.0% |
| !! | GCTTCATTTGCTATTGGTGG+CGG | + | chr7.4:7555740-7555759 | MS.gene24738:CDS | 45.0% |
| !! | GGTTGATGGTCCTGTTGAAA+GGG | + | chr7.4:7556087-7556106 | MS.gene24738:CDS | 45.0% |
| !! | TGGTTGATGGTCCTGTTGAA+AGG | + | chr7.4:7556086-7556105 | MS.gene24738:CDS | 45.0% |
| AGTGGCACAAACTATGGGGA+TGG | + | chr7.4:7555964-7555983 | MS.gene24738:CDS | 50.0% | |
| CCAATCCCATCCGAAGAAAC+CGG | - | chr7.4:7556004-7556023 | None:intergenic | 50.0% | |
| GGAACAACAGTCTGGTATGC+CGG | + | chr7.4:7555613-7555632 | MS.gene24738:CDS | 50.0% | |
| GTGGCACAAACTATGGGGAT+GGG | + | chr7.4:7555965-7555984 | MS.gene24738:CDS | 50.0% | |
| GTGGCAGTGGCACAAACTAT+GGG | + | chr7.4:7555959-7555978 | MS.gene24738:CDS | 50.0% | |
| GTTAGTCCGGTTTCTTCGGA+TGG | + | chr7.4:7555995-7556014 | MS.gene24738:CDS | 50.0% | |
| TATGGAGGGAGAGTGGTGAA+TGG | + | chr7.4:7555917-7555936 | MS.gene24738:CDS | 50.0% | |
| TCCGAAGAAACCGGACTAAC+AGG | - | chr7.4:7555995-7556014 | None:intergenic | 50.0% | |
| TGATGGTCCTGTTGAAAGGG+TGG | + | chr7.4:7556090-7556109 | MS.gene24738:CDS | 50.0% | |
| TGGCAGTGGCACAAACTATG+GGG | + | chr7.4:7555960-7555979 | MS.gene24738:CDS | 50.0% | |
| TGTGGCAGTGGCACAAACTA+TGG | + | chr7.4:7555958-7555977 | MS.gene24738:CDS | 50.0% | |
| !! | GGTTTGTTATGGAGGGAGAG+TGG | + | chr7.4:7555910-7555929 | MS.gene24738:CDS | 50.0% |
| !! | TCATTTGCTATTGGTGGCGG+CGG | + | chr7.4:7555743-7555762 | MS.gene24738:CDS | 50.0% |
| !! | TTGAAAGGGTGGTGGAGAGA+AGG | + | chr7.4:7556101-7556120 | MS.gene24738:CDS | 50.0% |
| AGGGAGAGTGGTGAATGGAG+GGG | + | chr7.4:7555922-7555941 | MS.gene24738:CDS | 55.0% | |
| CAGCAGCAGTGTCATCTCAC+CGG | + | chr7.4:7555660-7555679 | MS.gene24738:CDS | 55.0% | |
| CCATACCAAACGGTGGCACA+GGG | + | chr7.4:7555791-7555810 | MS.gene24738:CDS | 55.0% | |
| CCGGTTTCTTCGGATGGGAT+TGG | + | chr7.4:7556001-7556020 | MS.gene24738:CDS | 55.0% | |
| CCTCCATAACAAACCGCTGG+CGG | - | chr7.4:7555905-7555924 | None:intergenic | 55.0% | |
| CGCCAAAAGTCGGTTGTCGA+GGG | - | chr7.4:7555550-7555569 | None:intergenic | 55.0% | |
| CTCCCTCCATAACAAACCGC+TGG | - | chr7.4:7555908-7555927 | None:intergenic | 55.0% | |
| CTCTCCACCACCCTTTCAAC+AGG | - | chr7.4:7556100-7556119 | None:intergenic | 55.0% | |
| GAGGGAGAGTGGTGAATGGA+GGG | + | chr7.4:7555921-7555940 | MS.gene24738:CDS | 55.0% | |
| GCACAAACTATGGGGATGGG+CGG | + | chr7.4:7555968-7555987 | MS.gene24738:CDS | 55.0% | |
| GCCAAAAGTCGGTTGTCGAG+GGG | - | chr7.4:7555549-7555568 | None:intergenic | 55.0% | |
| GGTTCGGGGTATGTTGGGAA+TGG | + | chr7.4:7555839-7555858 | MS.gene24738:CDS | 55.0% | |
| GTGAGATGACACTGCTGCTG+CGG | - | chr7.4:7555660-7555679 | None:intergenic | 55.0% | |
| TCGCCAAAAGTCGGTTGTCG+AGG | - | chr7.4:7555551-7555570 | None:intergenic | 55.0% | |
| TGGAGGAGTTGGAGAGCCTT+CGG | + | chr7.4:7555817-7555836 | MS.gene24738:CDS | 55.0% | |
| TGGTCCTGTTGAAAGGGTGG+TGG | + | chr7.4:7556093-7556112 | MS.gene24738:CDS | 55.0% | |
| TGTGCCACCGTTTGGTATGG+CGG | - | chr7.4:7555791-7555810 | None:intergenic | 55.0% | |
| ! | AGTTGGAGAGCCTTCGGGTT+CGG | + | chr7.4:7555823-7555842 | MS.gene24738:CDS | 55.0% |
| ! | CTTCGGGTTCGGGGTATGTT+GGG | + | chr7.4:7555834-7555853 | MS.gene24738:CDS | 55.0% |
| !! | ACCCCTCGACAACCGACTTT+TGG | + | chr7.4:7555545-7555564 | MS.gene24738:CDS | 55.0% |
| !! | CGCCAGCGGTTTGTTATGGA+GGG | + | chr7.4:7555903-7555922 | MS.gene24738:CDS | 55.0% |
| AATGGAGGGGCGGGCAGTTA+TGG | + | chr7.4:7555935-7555954 | MS.gene24738:CDS | 60.0% | |
| ACACTGCGGCGTAATGCTGC+TGG | - | chr7.4:7555688-7555707 | None:intergenic | 60.0% | |
| ACTGCGGCGTAATGCTGCTG+GGG | - | chr7.4:7555686-7555705 | None:intergenic | 60.0% | |
| AGAGTGGTGAATGGAGGGGC+GGG | + | chr7.4:7555926-7555945 | MS.gene24738:CDS | 60.0% | |
| CACTGCGGCGTAATGCTGCT+GGG | - | chr7.4:7555687-7555706 | None:intergenic | 60.0% | |
| CCAACATACCCCGAACCCGA+AGG | - | chr7.4:7555836-7555855 | None:intergenic | 60.0% | |
| CCATAACAAACCGCTGGCGG+CGG | - | chr7.4:7555902-7555921 | None:intergenic | 60.0% | |
| CCCTGTGCCACCGTTTGGTA+TGG | - | chr7.4:7555794-7555813 | None:intergenic | 60.0% | |
| CGGTTGTCGAGGGGTAGACT+CGG | - | chr7.4:7555540-7555559 | None:intergenic | 60.0% | |
| GAGAGTGGTGAATGGAGGGG+CGG | + | chr7.4:7555925-7555944 | MS.gene24738:CDS | 60.0% | |
| GATGGGCGGACCTGTTAGTC+CGG | + | chr7.4:7555982-7556001 | MS.gene24738:CDS | 60.0% | |
| GCCATACCAAACGGTGGCAC+AGG | + | chr7.4:7555790-7555809 | MS.gene24738:CDS | 60.0% | |
| GGAGGAGTTGGAGAGCCTTC+GGG | + | chr7.4:7555818-7555837 | MS.gene24738:CDS | 60.0% | |
| GGAGGGAGAGTGGTGAATGG+AGG | + | chr7.4:7555920-7555939 | MS.gene24738:CDS | 60.0% | |
| GGGCAGTTATGGTGTGGCAG+TGG | + | chr7.4:7555946-7555965 | MS.gene24738:CDS | 60.0% | |
| GGTTGCGCCGCCATACCAAA+CGG | + | chr7.4:7555781-7555800 | MS.gene24738:CDS | 60.0% | |
| TACCAAACGGTGGCACAGGG+AGG | + | chr7.4:7555794-7555813 | MS.gene24738:CDS | 60.0% | |
| TGGTGGAGAGAAGGCAGAGG+AGG | + | chr7.4:7556110-7556129 | MS.gene24738:CDS | 60.0% | |
| ! | CCTTCGGGTTCGGGGTATGT+TGG | + | chr7.4:7555833-7555852 | MS.gene24738:CDS | 60.0% |
| ! | GTTGGAGAGCCTTCGGGTTC+GGG | + | chr7.4:7555824-7555843 | MS.gene24738:CDS | 60.0% |
| ! | TTGGAGAGCCTTCGGGTTCG+GGG | + | chr7.4:7555825-7555844 | MS.gene24738:CDS | 60.0% |
| !! | CCGCCAGCGGTTTGTTATGG+AGG | + | chr7.4:7555902-7555921 | MS.gene24738:CDS | 60.0% |
| !! | GGTGGTGGTGCTATGGCAAC+CGG | - | chr7.4:7555635-7555654 | None:intergenic | 60.0% |
| !! | TTTGCTATTGGTGGCGGCGG+CGG | + | chr7.4:7555746-7555765 | MS.gene24738:CDS | 60.0% |
| AGGGGCGGGCAGTTATGGTG+TGG | + | chr7.4:7555940-7555959 | MS.gene24738:CDS | 65.0% | |
| CAAACGGTGGCACAGGGAGG+TGG | + | chr7.4:7555797-7555816 | MS.gene24738:CDS | 65.0% | |
| CACCTCCCTGTGCCACCGTT+TGG | - | chr7.4:7555799-7555818 | None:intergenic | 65.0% | |
| CGGCGGCGGGAATCTGAATG+TGG | + | chr7.4:7555760-7555779 | MS.gene24738:CDS | 65.0% | |
| GATGACACTGCTGCTGCGGC+AGG | - | chr7.4:7555656-7555675 | None:intergenic | 65.0% | |
| GCACAGGGAGGTGGAGGAGT+TGG | + | chr7.4:7555806-7555825 | MS.gene24738:CDS | 65.0% | |
| TAACAAACCGCTGGCGGCGG+CGG | - | chr7.4:7555899-7555918 | None:intergenic | 65.0% | |
| TGCGCCGCCATACCAAACGG+TGG | + | chr7.4:7555784-7555803 | MS.gene24738:CDS | 65.0% | |
| ! | TGCGGCAGGTGGTGGTGCTA+TGG | - | chr7.4:7555642-7555661 | None:intergenic | 65.0% |
| !! | CCGCCGCCAGCGGTTTGTTA+TGG | + | chr7.4:7555899-7555918 | MS.gene24738:CDS | 65.0% |
| !! | GGGTGGTGGAGAGAAGGCAG+AGG | + | chr7.4:7556107-7556126 | MS.gene24738:CDS | 65.0% |
| !! | TTGCTATTGGTGGCGGCGGC+GGG | + | chr7.4:7555747-7555766 | MS.gene24738:CDS | 65.0% |
| ACGGTGGCACAGGGAGGTGG+AGG | + | chr7.4:7555800-7555819 | MS.gene24738:CDS | 70.0% | |
| ACTGCTGCTGCGGCAGGTGG+TGG | - | chr7.4:7555650-7555669 | None:intergenic | 70.0% | |
| CGGCGTAATGCTGCTGGGGC+CGG | - | chr7.4:7555682-7555701 | None:intergenic | 70.0% | |
| GACACTGCTGCTGCGGCAGG+TGG | - | chr7.4:7555653-7555672 | None:intergenic | 70.0% | |
| GTATCCTCCGCCGCCGCCAG+CGG | + | chr7.4:7555889-7555908 | MS.gene24738:CDS | 75.0% | |
| ! | CAAACCGCTGGCGGCGGCGG+AGG | - | chr7.4:7555896-7555915 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 7555457 | 7556859 | 7555457 | ID=MS.gene24738 |
| chr7.4 | mRNA | 7555457 | 7556859 | 7555457 | ID=MS.gene24738.t1;Parent=MS.gene24738 |
| chr7.4 | exon | 7555457 | 7556180 | 7555457 | ID=MS.gene24738.t1.exon1;Parent=MS.gene24738.t1 |
| chr7.4 | CDS | 7555457 | 7556180 | 7555457 | ID=cds.MS.gene24738.t1;Parent=MS.gene24738.t1 |
| chr7.4 | exon | 7556429 | 7556500 | 7556429 | ID=MS.gene24738.t1.exon2;Parent=MS.gene24738.t1 |
| chr7.4 | CDS | 7556429 | 7556500 | 7556429 | ID=cds.MS.gene24738.t1;Parent=MS.gene24738.t1 |
| chr7.4 | exon | 7556598 | 7556640 | 7556598 | ID=MS.gene24738.t1.exon3;Parent=MS.gene24738.t1 |
| chr7.4 | CDS | 7556598 | 7556640 | 7556598 | ID=cds.MS.gene24738.t1;Parent=MS.gene24738.t1 |
| chr7.4 | exon | 7556738 | 7556859 | 7556738 | ID=MS.gene24738.t1.exon4;Parent=MS.gene24738.t1 |
| chr7.4 | CDS | 7556738 | 7556859 | 7556738 | ID=cds.MS.gene24738.t1;Parent=MS.gene24738.t1 |
| Gene Sequence |
| Protein sequence |
