AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24960.t1 MTR_4g013260 95.633 229 9 1 1 229 266 493 2.39e-153 435
MS.gene24960.t1 MTR_4g013260 41.071 112 55 3 41 150 163 265 2.76e-16 77.4
MS.gene24960.t1 MTR_7g071120 59.504 242 79 6 3 229 258 495 2.27e-86 264
MS.gene24960.t1 MTR_7g071120 56.452 62 22 2 71 130 166 224 2.20e-15 75.1
MS.gene24960.t1 MTR_5g074400 70.073 137 36 3 8 140 354 489 1.74e-59 197
MS.gene24960.t1 MTR_5g074400 56.452 62 22 2 71 130 243 301 1.66e-15 75.5
MS.gene24960.t1 MTR_3g031220 66.901 142 41 3 3 141 297 435 1.76e-58 192
MS.gene24960.t1 MTR_3g031220 49.333 75 33 2 62 132 185 258 2.58e-16 77.8
MS.gene24960.t1 MTR_3g009470 66.187 139 38 4 9 145 436 567 5.42e-51 176
MS.gene24960.t1 MTR_3g009470 56.667 60 25 1 71 130 280 338 5.86e-15 73.9
MS.gene24960.t1 MTR_5g094430 75.000 96 24 0 51 146 210 305 1.46e-46 159
MS.gene24960.t1 MTR_5g094430 55.000 60 26 1 71 130 66 124 1.63e-13 69.3
MS.gene24960.t1 MTR_5g094430 75.000 96 24 0 51 146 232 327 1.66e-46 159
MS.gene24960.t1 MTR_5g094430 55.000 60 26 1 71 130 88 146 1.33e-13 69.7
MS.gene24960.t1 MTR_7g080020 53.846 182 63 7 6 178 428 597 5.50e-46 162
MS.gene24960.t1 MTR_7g080020 49.412 85 39 3 71 152 280 363 2.64e-15 74.7
MS.gene24960.t1 MTR_5g094430 75.789 95 23 0 52 146 345 439 6.68e-46 160
MS.gene24960.t1 MTR_5g094430 55.000 60 26 1 71 130 200 258 1.04e-13 70.1
MS.gene24960.t1 MTR_3g056100 80.233 86 17 0 48 133 235 320 1.44e-45 157
MS.gene24960.t1 MTR_3g056100 56.667 60 25 1 71 130 99 157 2.17e-14 72.0
MS.gene24960.t1 MTR_3g056100 80.233 86 17 0 48 133 248 333 1.83e-45 157
MS.gene24960.t1 MTR_3g056100 56.667 60 25 1 71 130 99 157 2.18e-14 72.0
MS.gene24960.t1 MTR_5g042920 71.717 99 28 0 47 145 296 394 3.53e-45 156
MS.gene24960.t1 MTR_5g042920 61.290 62 19 3 71 130 151 209 8.99e-16 75.9
MS.gene24960.t1 MTR_3g056100 80.233 86 17 0 48 133 379 464 3.66e-45 159
MS.gene24960.t1 MTR_3g056100 56.667 60 25 1 71 130 243 301 1.28e-14 72.8
MS.gene24960.t1 MTR_3g056100 80.233 86 17 0 48 133 392 477 3.84e-45 159
MS.gene24960.t1 MTR_3g056100 56.667 60 25 1 71 130 243 301 1.27e-14 72.8
MS.gene24960.t1 MTR_7g011820 64.545 110 28 1 52 161 391 489 8.90e-44 154
MS.gene24960.t1 MTR_7g011820 42.609 115 40 4 54 152 196 300 6.70e-16 76.6
MS.gene24960.t1 MTR_7g080000 60.305 131 40 3 6 133 373 494 1.21e-43 155
MS.gene24960.t1 MTR_7g080000 61.905 63 19 3 70 130 233 292 2.91e-15 74.7
MS.gene24960.t1 MTR_4g082580 53.030 132 56 2 24 155 237 362 1.21e-41 145
MS.gene24960.t1 MTR_4g082580 55.000 60 27 0 71 130 145 204 1.36e-13 69.3
MS.gene24960.t1 MTR_5g097490 48.872 133 55 2 31 163 215 334 3.17e-35 129
MS.gene24960.t1 MTR_5g097490 42.466 73 41 1 69 141 90 161 1.68e-11 63.2
MS.gene24960.t1 MTR_7g100510 56.000 100 41 1 32 131 325 421 1.28e-33 125
MS.gene24960.t1 MTR_7g100510 44.944 89 43 3 47 130 160 247 1.01e-14 72.8
MS.gene24960.t1 MTR_1g077780 65.823 79 27 0 52 130 43 121 1.37e-33 118
MS.gene24960.t1 MTR_3g031220 64.130 92 27 3 3 91 297 385 2.98e-30 115
MS.gene24960.t1 MTR_3g031220 49.333 75 33 2 62 132 185 258 1.42e-16 78.2
MS.gene24960.t1 MTR_8g007270 61.842 76 29 0 52 127 135 210 7.59e-30 111
MS.gene24960.t1 MTR_4g094588 64.865 74 26 0 57 130 164 237 1.12e-29 113
MS.gene24960.t1 MTR_1g015140 61.842 76 28 1 52 127 84 158 1.50e-28 105
MS.gene24960.t1 MTR_3g095080 59.459 74 30 0 54 127 127 200 1.09e-27 105
MS.gene24960.t1 MTR_3g095080 59.459 74 30 0 54 127 151 224 1.09e-27 105
MS.gene24960.t1 MTR_7g109800 46.281 121 55 2 55 175 129 239 1.65e-27 106
MS.gene24960.t1 MTR_2g033820 53.261 92 43 0 55 146 187 278 1.88e-27 108
MS.gene24960.t1 MTR_5g091390 62.162 74 28 0 57 130 143 216 1.89e-27 107
MS.gene24960.t1 MTR_8g096730 55.422 83 37 0 47 129 46 128 2.42e-27 102
MS.gene24960.t1 MTR_4g130900 52.273 88 42 0 46 133 334 421 6.34e-27 107
MS.gene24960.t1 MTR_1g086790 57.895 76 32 0 55 130 142 217 1.24e-26 105
MS.gene24960.t1 MTR_8g092010 39.098 133 79 1 1 131 36 168 1.52e-26 101
MS.gene24960.t1 MTR_3g104750 55.263 76 34 0 52 127 85 160 1.80e-26 100
MS.gene24960.t1 MTR_8g092140 58.667 75 30 1 54 127 142 216 2.10e-26 102
MS.gene24960.t1 MTR_5g043880 56.962 79 34 0 49 127 102 180 2.13e-26 103
MS.gene24960.t1 MTR_7g028415 63.235 68 25 0 62 129 84 151 4.56e-26 99.8
MS.gene24960.t1 MTR_7g028710 63.235 68 25 0 62 129 84 151 4.56e-26 99.8
MS.gene24960.t1 MTR_7g079010 60.526 76 30 0 52 127 122 197 5.22e-26 100
MS.gene24960.t1 MTR_4g132430 51.899 79 37 1 53 130 109 187 1.05e-24 100
MS.gene24960.t1 MTR_3g095040 54.667 75 34 0 57 131 104 178 2.01e-24 96.3
MS.gene24960.t1 MTR_2g023930 51.899 79 37 1 53 130 287 365 2.53e-24 100
MS.gene24960.t1 MTR_7g110720 53.247 77 35 1 55 130 173 249 2.59e-24 99.8
MS.gene24960.t1 MTR_3g053330 51.282 78 37 1 54 130 234 311 2.61e-24 100
MS.gene24960.t1 MTR_4g094412 53.165 79 36 1 55 132 218 296 2.89e-24 100
MS.gene24960.t1 MTR_7g110720 50.000 84 41 1 48 130 193 276 2.96e-24 100
MS.gene24960.t1 MTR_4g094412 53.165 79 36 1 55 132 227 305 3.12e-24 100
MS.gene24960.t1 MTR_4g132430 51.899 79 37 1 53 130 243 321 4.77e-24 99.8
MS.gene24960.t1 MTR_4g107970 51.899 79 37 1 54 131 161 239 6.58e-24 99.8
MS.gene24960.t1 MTR_4g107970 51.899 79 37 1 54 131 238 316 1.04e-23 99.4
MS.gene24960.t1 MTR_2g088000 51.899 79 37 1 53 130 331 409 1.22e-23 99.0
MS.gene24960.t1 MTR_4g122530 53.247 77 36 0 55 131 192 268 3.58e-23 97.1
MS.gene24960.t1 MTR_5g097500 47.126 87 46 0 56 142 215 301 6.06e-23 94.7
MS.gene24960.t1 MTR_3g009470 58.696 92 31 3 2 91 429 515 3.82e-22 94.4
MS.gene24960.t1 MTR_3g009470 56.667 60 25 1 71 130 280 338 5.89e-15 73.6
MS.gene24960.t1 MTR_1g078260 46.667 105 54 2 25 127 200 304 4.21e-22 94.4
MS.gene24960.t1 MTR_1g009613 38.168 131 65 4 12 129 194 321 5.02e-22 92.8
MS.gene24960.t1 MTR_4g094908 50.633 79 35 2 52 129 250 325 7.97e-22 92.0
MS.gene24960.t1 MTR_2g105060 41.525 118 53 4 48 160 69 175 8.91e-22 90.5
MS.gene24960.t1 MTR_2g105060 41.525 118 53 4 48 160 144 250 9.47e-22 91.7
MS.gene24960.t1 MTR_2g045360 45.361 97 45 3 50 141 193 286 1.24e-21 92.8
MS.gene24960.t1 MTR_4g049790 49.367 79 39 1 53 130 294 372 1.45e-21 92.8
MS.gene24960.t1 MTR_7g009730 50.649 77 37 1 54 129 202 278 2.02e-21 92.4
MS.gene24960.t1 MTR_5g016610 53.333 75 34 1 58 131 186 260 3.25e-21 89.4
MS.gene24960.t1 MTR_6g086555 52.632 76 35 1 57 131 192 267 3.56e-21 91.3
MS.gene24960.t1 MTR_4g049760 40.708 113 53 2 58 156 277 389 2.04e-20 89.7
MS.gene24960.t1 MTR_3g106060 36.567 134 67 3 12 127 62 195 2.75e-19 84.7
MS.gene24960.t1 MTR_4g127040 49.351 77 35 2 52 127 229 302 5.23e-19 84.3
MS.gene24960.t1 MTR_1g070455 49.351 77 35 2 52 127 277 350 6.44e-19 84.3
MS.gene24960.t1 MTR_4g007060 41.748 103 45 3 69 162 126 222 6.98e-19 83.2
MS.gene24960.t1 MTR_4g007060 41.748 103 45 3 69 162 160 256 8.47e-19 83.6
MS.gene24960.t1 MTR_7g062220 59.649 57 23 0 71 127 124 180 1.19e-18 83.2
MS.gene24960.t1 MTR_1g013760 41.304 92 48 3 42 127 106 197 1.08e-17 80.1
MS.gene24960.t1 MTR_1g013790 41.758 91 52 1 59 148 89 179 1.42e-17 79.3
MS.gene24960.t1 MTR_4g047580 34.746 118 63 2 53 156 263 380 2.27e-16 77.8
MS.gene24960.t1 MTR_1g099600 35.577 104 65 2 52 154 167 269 3.74e-16 76.3
MS.gene24960.t1 MTR_2g032030 42.045 88 49 2 64 150 261 347 4.14e-16 77.0
MS.gene24960.t1 MTR_7g109600 33.562 146 68 4 72 213 54 174 5.76e-16 75.1
MS.gene24960.t1 MTR_3g108960 43.590 78 43 1 52 128 295 372 5.83e-16 76.3
MS.gene24960.t1 MTR_2g032030 42.045 88 49 2 64 150 261 347 6.56e-16 76.3
MS.gene24960.t1 MTR_8g087000 44.444 72 39 1 72 142 78 149 6.59e-16 74.7
MS.gene24960.t1 MTR_8g087000 44.444 72 39 1 72 142 77 148 6.63e-16 74.7
MS.gene24960.t1 MTR_2g083870 47.826 69 35 1 72 139 81 149 2.07e-15 73.6
MS.gene24960.t1 MTR_8g028565 42.391 92 41 3 72 162 156 236 3.06e-15 73.9
MS.gene24960.t1 MTR_8g098945 49.231 65 32 1 70 133 128 192 3.56e-15 73.2
MS.gene24960.t1 MTR_0117s0040 45.455 77 39 2 52 127 57 131 4.16e-15 72.4
MS.gene24960.t1 MTR_2g024350 48.485 66 33 1 66 130 3 68 4.42e-15 72.0
MS.gene24960.t1 MTR_2g016770 43.902 82 38 2 72 152 36 110 1.01e-14 70.9
MS.gene24960.t1 MTR_2g016770 43.902 82 38 2 72 152 28 102 1.26e-14 70.5
MS.gene24960.t1 MTR_2g024380 48.485 66 33 1 66 130 246 311 1.67e-14 72.4
MS.gene24960.t1 MTR_1g077760 67.500 40 13 0 52 91 95 134 2.72e-14 67.8
MS.gene24960.t1 MTR_7g079040 51.667 60 28 1 72 130 155 214 4.07e-14 70.5
MS.gene24960.t1 MTR_5g074200 53.333 60 27 1 71 130 220 278 8.63e-14 69.7
MS.gene24960.t1 MTR_8g067635 41.667 84 39 2 69 151 347 421 2.13e-13 69.3
MS.gene24960.t1 MTR_8g069935 40.845 71 38 2 71 140 331 398 3.04e-13 68.6
MS.gene24960.t1 MTR_5g044695 52.174 46 22 0 53 98 59 104 3.68e-13 63.9
MS.gene24960.t1 MTR_8g067650 41.667 84 39 2 69 151 337 411 5.10e-13 68.2
MS.gene24960.t1 MTR_3g090860 40.789 76 40 2 70 142 132 205 2.59e-12 65.5
MS.gene24960.t1 MTR_6g053200 39.437 71 42 1 71 140 330 400 5.18e-12 65.1
MS.gene24960.t1 MTR_6g038890 52.174 46 22 0 53 98 170 215 7.67e-12 62.8
MS.gene24960.t1 MTR_3g095080 60.000 40 16 0 54 93 151 190 1.42e-11 61.6
MS.gene24960.t1 MTR_8g099350 48.276 58 27 1 71 125 132 189 1.66e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24960.t1 AT2G38470 56.250 192 60 7 6 195 299 468 1.85e-60 198
MS.gene24960.t1 AT2G38470 54.839 62 23 2 71 130 184 242 4.04e-15 74.3
MS.gene24960.t1 AT5G56270 75.728 103 22 1 31 133 450 549 1.46e-47 166
MS.gene24960.t1 AT5G56270 55.738 61 24 2 71 130 273 331 5.46e-14 70.9
MS.gene24960.t1 AT5G07100 68.966 116 20 3 21 133 101 203 6.21e-47 155
MS.gene24960.t1 AT5G07100 40.217 92 44 1 59 139 1 92 6.42e-15 71.2
MS.gene24960.t1 AT5G07100 68.966 116 20 3 21 133 101 203 6.21e-47 155
MS.gene24960.t1 AT5G07100 40.217 92 44 1 59 139 1 92 6.42e-15 71.2
MS.gene24960.t1 AT5G07100 68.966 116 20 3 21 133 101 203 6.21e-47 155
MS.gene24960.t1 AT5G07100 40.217 92 44 1 59 139 1 92 6.42e-15 71.2
MS.gene24960.t1 AT5G07100 68.966 116 20 3 21 133 101 203 6.21e-47 155
MS.gene24960.t1 AT5G07100 40.217 92 44 1 59 139 1 92 6.42e-15 71.2
MS.gene24960.t1 AT5G07100 68.966 116 20 3 21 133 194 296 1.12e-46 157
MS.gene24960.t1 AT5G07100 40.426 94 45 1 57 139 92 185 8.18e-16 75.1
MS.gene24960.t1 AT4G26640 63.333 120 38 1 24 143 164 277 4.27e-46 157
MS.gene24960.t1 AT4G26640 54.839 62 27 1 69 130 33 93 3.76e-14 71.2
MS.gene24960.t1 AT4G26640 63.333 120 38 1 24 143 164 277 4.27e-46 157
MS.gene24960.t1 AT4G26640 54.839 62 27 1 69 130 33 93 3.76e-14 71.2
MS.gene24960.t1 AT4G26640 63.333 120 38 1 24 143 164 277 4.27e-46 157
MS.gene24960.t1 AT4G26640 54.839 62 27 1 69 130 33 93 3.76e-14 71.2
MS.gene24960.t1 AT4G26640 63.333 120 38 1 24 143 164 277 4.27e-46 157
MS.gene24960.t1 AT4G26640 54.839 62 27 1 69 130 33 93 3.76e-14 71.2
MS.gene24960.t1 AT4G26640 63.333 120 38 1 24 143 268 381 8.65e-46 159
MS.gene24960.t1 AT4G26640 54.839 62 27 1 69 130 137 197 2.65e-14 71.6
MS.gene24960.t1 AT4G26640 63.333 120 38 1 24 143 300 413 1.02e-45 159
MS.gene24960.t1 AT4G26640 54.839 62 27 1 69 130 169 229 2.55e-14 72.0
MS.gene24960.t1 AT4G26640 63.333 120 38 1 24 143 340 453 2.00e-45 159
MS.gene24960.t1 AT4G26640 54.839 62 27 1 69 130 209 269 2.56e-14 72.0
MS.gene24960.t1 AT1G13960 68.224 107 24 1 34 130 209 315 6.63e-45 154
MS.gene24960.t1 AT1G13960 60.000 60 23 1 71 130 76 134 2.97e-16 77.0
MS.gene24960.t1 AT1G13960 68.224 107 24 1 34 130 362 468 1.18e-44 156
MS.gene24960.t1 AT1G13960 60.000 60 23 1 71 130 229 287 9.75e-17 79.0
MS.gene24960.t1 AT2G03340 66.055 109 36 1 52 160 396 503 1.63e-43 153
MS.gene24960.t1 AT2G03340 49.425 87 38 2 71 152 250 335 4.75e-18 82.8
MS.gene24960.t1 AT3G01080 82.278 79 14 0 52 130 325 403 2.79e-42 149
MS.gene24960.t1 AT3G01080 53.968 63 28 1 71 133 205 266 2.74e-14 71.6
MS.gene24960.t1 AT3G01080 82.278 79 14 0 52 130 287 365 3.29e-42 148
MS.gene24960.t1 AT3G01080 53.968 63 28 1 71 133 167 228 2.94e-14 71.6
MS.gene24960.t1 AT4G26440 62.016 129 39 4 9 133 312 434 7.74e-42 149
MS.gene24960.t1 AT4G26440 53.226 62 24 2 71 130 178 236 2.89e-13 68.9
MS.gene24960.t1 AT2G30250 66.327 98 31 1 33 130 292 387 8.24e-40 141
MS.gene24960.t1 AT2G30250 45.055 91 42 3 40 130 142 224 5.31e-14 70.9
MS.gene24960.t1 AT2G04880 62.353 85 32 0 52 136 264 348 3.38e-33 124
MS.gene24960.t1 AT2G04880 46.269 67 35 1 69 135 109 174 4.86e-14 70.9
MS.gene24960.t1 AT2G04880 62.353 85 32 0 52 136 288 372 5.42e-33 124
MS.gene24960.t1 AT2G04880 46.269 67 35 1 69 135 109 174 5.04e-14 70.9
MS.gene24960.t1 AT2G44745 47.748 111 57 1 17 127 92 201 3.38e-30 112
MS.gene24960.t1 AT4G18170 63.158 76 28 0 55 130 156 231 6.41e-30 113
MS.gene24960.t1 AT1G29860 64.474 76 27 0 55 130 120 195 2.26e-29 111
MS.gene24960.t1 AT4G30935 51.485 101 45 1 33 133 297 393 1.20e-28 112
MS.gene24960.t1 AT1G55600 60.494 81 32 0 50 130 286 366 1.20e-28 112
MS.gene24960.t1 AT4G39410 61.842 76 29 0 52 127 204 279 1.91e-28 109
MS.gene24960.t1 AT5G46350 59.740 77 31 0 57 133 169 245 2.03e-28 109
MS.gene24960.t1 AT5G26170 60.000 70 28 0 58 127 100 169 2.10e-27 103
MS.gene24960.t1 AT5G49520 59.740 77 31 0 55 131 205 281 7.14e-27 107
MS.gene24960.t1 AT2G47260 57.143 84 35 1 55 137 158 241 9.32e-27 105
MS.gene24960.t1 AT5G13080 49.000 100 43 1 38 129 26 125 1.08e-26 100
MS.gene24960.t1 AT3G01970 62.500 72 27 0 58 129 52 123 1.16e-26 100
MS.gene24960.t1 AT5G41570 57.895 76 32 0 52 127 79 154 1.90e-26 101
MS.gene24960.t1 AT1G69310 57.895 76 32 0 52 127 128 203 2.01e-26 103
MS.gene24960.t1 AT1G69310 57.895 76 32 0 52 127 128 203 2.01e-26 103
MS.gene24960.t1 AT1G69310 57.895 76 32 0 52 127 128 203 2.01e-26 103
MS.gene24960.t1 AT2G37260 57.143 91 39 0 60 150 258 348 2.22e-26 104
MS.gene24960.t1 AT2G37260 54.286 70 28 2 72 138 86 154 1.67e-14 72.0
MS.gene24960.t1 AT2G37260 57.143 91 39 0 60 150 256 346 2.34e-26 104
MS.gene24960.t1 AT2G37260 54.286 70 28 2 72 138 84 152 1.70e-14 72.0
MS.gene24960.t1 AT1G64000 55.696 79 35 0 49 127 92 170 2.82e-26 101
MS.gene24960.t1 AT2G37260 57.143 91 39 0 60 150 338 428 6.32e-26 104
MS.gene24960.t1 AT2G37260 54.286 70 28 2 72 138 166 234 2.05e-14 72.0
MS.gene24960.t1 AT4G04450 41.221 131 68 2 53 182 180 302 2.03e-25 103
MS.gene24960.t1 AT5G64810 59.155 71 29 0 58 128 97 167 2.21e-25 98.6
MS.gene24960.t1 AT4G04450 41.221 131 68 2 53 182 274 396 6.90e-25 102
MS.gene24960.t1 AT5G15130 53.165 79 36 1 54 131 168 246 1.28e-24 101
MS.gene24960.t1 AT1G62300 53.165 79 36 1 53 130 294 372 1.43e-24 101
MS.gene24960.t1 AT2G46130 56.579 76 33 0 52 127 11 86 1.46e-24 94.0
MS.gene24960.t1 AT5G15130 53.165 79 36 1 54 131 210 288 1.68e-24 101
MS.gene24960.t1 AT1G68150 53.165 79 36 1 55 132 219 297 2.66e-24 99.4
MS.gene24960.t1 AT4G22070 53.165 79 36 1 53 130 279 357 2.84e-24 100
MS.gene24960.t1 AT4G22070 53.165 79 36 1 53 130 279 357 2.84e-24 100
MS.gene24960.t1 AT4G22070 53.165 79 36 1 53 130 279 357 2.84e-24 100
MS.gene24960.t1 AT4G22070 53.165 79 36 1 53 130 279 357 2.84e-24 100
MS.gene24960.t1 AT1G18860 53.846 78 35 1 54 130 222 299 5.44e-24 99.8
MS.gene24960.t1 AT3G62340 57.143 77 33 0 55 131 102 178 2.72e-23 95.1
MS.gene24960.t1 AT4G31550 50.538 93 41 3 52 142 230 319 2.47e-22 93.6
MS.gene24960.t1 AT4G31550 50.538 93 41 3 52 142 229 318 2.75e-22 93.2
MS.gene24960.t1 AT4G01720 50.649 77 37 1 55 130 223 299 1.13e-21 93.2
MS.gene24960.t1 AT2G23320 49.367 79 36 2 52 129 224 299 1.67e-21 90.9
MS.gene24960.t1 AT1G69310 53.947 76 31 1 52 127 128 199 1.94e-21 90.5
MS.gene24960.t1 AT4G24240 53.333 75 34 1 58 131 268 342 3.18e-21 90.9
MS.gene24960.t1 AT2G24570 54.545 77 31 2 52 127 227 300 1.04e-20 89.0
MS.gene24960.t1 AT1G80840 38.983 118 56 3 69 170 144 261 2.21e-20 87.8
MS.gene24960.t1 AT5G28650 50.649 77 34 2 52 127 246 319 2.78e-20 87.8
MS.gene24960.t1 AT3G04670 50.649 77 34 2 52 127 246 319 8.69e-20 86.7
MS.gene24960.t1 AT2G21900 50.000 74 34 1 60 130 95 168 8.94e-20 84.3
MS.gene24960.t1 AT2G46130 52.632 76 32 1 52 127 11 82 1.47e-19 80.9
MS.gene24960.t1 AT2G30590 50.649 77 37 1 52 127 294 370 4.28e-19 85.1
MS.gene24960.t1 AT4G23550 43.678 87 48 1 60 145 129 215 6.77e-19 84.0
MS.gene24960.t1 AT1G69810 35.659 129 67 3 19 131 79 207 9.86e-19 83.6
MS.gene24960.t1 AT1G69810 35.659 129 67 3 19 131 137 265 1.50e-18 83.6
MS.gene24960.t1 AT2G25000 48.387 62 31 1 70 130 102 163 1.79e-17 78.6
MS.gene24960.t1 AT2G25000 48.387 62 31 1 70 130 102 163 1.79e-17 78.6
MS.gene24960.t1 AT2G25000 48.387 62 31 1 70 130 124 185 2.99e-17 78.6
MS.gene24960.t1 AT4G31800 43.836 73 40 1 59 130 99 171 3.69e-17 78.2
MS.gene24960.t1 AT2G25000 48.387 62 31 1 70 130 145 206 4.31e-17 78.2
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 4.92e-17 80.1
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.98e-12 65.9
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 4.92e-17 80.1
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 3.98e-12 65.9
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 5.60e-17 80.1
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.15e-12 65.9
MS.gene24960.t1 AT4G31800 43.836 73 40 1 59 130 164 236 5.64e-17 78.6
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 5.81e-17 80.1
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.31e-12 65.5
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 6.25e-17 79.7
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.25e-12 65.9
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 6.25e-17 79.7
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.25e-12 65.9
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 6.59e-17 79.7
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 5.79e-12 65.1
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 6.61e-17 79.7
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.50e-12 65.5
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 6.77e-17 79.7
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.48e-12 65.5
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 516 594 7.01e-17 79.7
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 400 459 4.68e-12 65.5
MS.gene24960.t1 AT4G12020 53.086 81 36 1 11 91 583 661 7.03e-17 79.7
MS.gene24960.t1 AT4G12020 49.180 61 30 1 70 130 467 526 4.74e-12 65.5
MS.gene24960.t1 AT5G43290 55.932 59 26 0 69 127 112 170 1.17e-16 77.0
MS.gene24960.t1 AT5G52830 35.294 119 66 3 52 169 147 255 3.02e-16 77.0
MS.gene24960.t1 AT1G29280 50.820 61 29 1 72 131 75 135 3.40e-16 75.5
MS.gene24960.t1 AT4G01250 52.381 63 29 1 72 133 129 191 3.90e-16 75.9
MS.gene24960.t1 AT1G30650 40.741 81 47 1 54 133 200 280 3.24e-15 74.3
MS.gene24960.t1 AT2G34830 40.741 81 47 1 54 133 198 278 3.97e-15 73.9
MS.gene24960.t1 AT2G34830 40.741 81 47 1 54 133 207 287 4.12e-15 73.9
MS.gene24960.t1 AT3G01080 53.968 63 28 1 71 133 205 266 1.14e-14 72.4
MS.gene24960.t1 AT3G58710 41.667 84 42 2 62 144 62 139 3.17e-14 70.5
MS.gene24960.t1 AT3G58710 41.667 84 42 2 62 144 61 138 3.26e-14 70.5
MS.gene24960.t1 AT5G45050 44.186 86 34 3 55 133 1137 1215 2.19e-13 69.3
MS.gene24960.t1 AT5G45050 44.186 86 34 3 55 133 1026 1104 2.43e-13 69.3
MS.gene24960.t1 AT5G45050 44.186 86 34 3 55 133 1165 1243 2.46e-13 69.3
MS.gene24960.t1 AT5G24110 30.496 141 91 4 58 192 99 238 4.23e-11 62.0
MS.gene24960.t1 AT2G46400 37.662 77 45 1 52 125 85 161 5.45e-11 61.6

Find 35 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCTTCTGATCTTTCTT+TGG 0.174215 4.1:-82506312 MS.gene24960:CDS
GTACTGATCTTACCATCTTT+TGG 0.288931 4.1:+82506217 None:intergenic
ATGGCTTCTGATCTTTCTTT+GGG 0.307243 4.1:-82506311 MS.gene24960:CDS
TTATTTGCATACCTTGGGTT+TGG 0.317158 4.1:+82505821 None:intergenic
GGATATAGGTGGAGGAAATA+TGG 0.321679 4.1:-82505866 MS.gene24960:CDS
GTCACTGCTGAAGGCCTTAT+AGG 0.327921 4.1:+82505381 None:intergenic
TATGGACAGAAAGTAGTTAA+AGG 0.332389 4.1:-82505848 MS.gene24960:CDS
TTCTGATCTTTCTTTGGGAG+AGG 0.403118 4.1:-82506306 MS.gene24960:CDS
AGCCGAGTATTGTTCCGAAT+TGG 0.406866 4.1:+82505221 None:intergenic
ATATTCTTGATGATGGATAT+AGG 0.416334 4.1:-82505880 MS.gene24960:CDS
AATTGGTTCAAATACCAATT+CGG 0.428619 4.1:-82505235 MS.gene24960:CDS
CATGTAATGTCACACCTATA+AGG 0.446877 4.1:-82505395 MS.gene24960:CDS
GCAGTAATCACAACATATGA+AGG 0.450008 4.1:-82505498 MS.gene24960:CDS
GAAATTGATATTCTTGATGA+TGG 0.452886 4.1:-82505887 MS.gene24960:CDS
TGGAGGAGATTATGATGACT+TGG 0.466240 4.1:-82506249 MS.gene24960:CDS
AGAAGGGTGTAGAACTGTTA+AGG 0.478856 4.1:-82505939 MS.gene24960:CDS
TTATGATGACTTGGGAATAG+AGG 0.481749 4.1:-82506240 MS.gene24960:CDS
GTAGTTTGAACCACAACTCT+AGG 0.508298 4.1:+82505914 None:intergenic
TACCAATTCGGAACAATACT+CGG 0.514905 4.1:-82505223 MS.gene24960:CDS
AGCTATTCTTATTCCACAGA+AGG 0.516161 4.1:-82505956 MS.gene24960:CDS
GGAGGAGATTATGATGACTT+GGG 0.531440 4.1:-82506248 MS.gene24960:CDS
CTCTTCCTAGAGGTACATCA+TGG 0.532042 4.1:+82505466 None:intergenic
CATGATGTACCTCTAGGAAG+AGG 0.569832 4.1:-82505465 MS.gene24960:CDS
GAATAATTAGTCACTGCTGA+AGG 0.572182 4.1:+82505372 None:intergenic
TTGATGATGGATATAGGTGG+AGG 0.585484 4.1:-82505874 MS.gene24960:CDS
TGGGAATAGAGGCCAAAAGA+TGG 0.587508 4.1:-82506229 MS.gene24960:intron
AACAGTTCTACACCCTTCTG+TGG 0.594037 4.1:+82505943 None:intergenic
TACTACAAATGTGTAATCCA+AGG 0.596332 4.1:-82505567 MS.gene24960:CDS
CATAACCATGATGTACCTCT+AGG 0.598674 4.1:-82505471 MS.gene24960:CDS
GCTATTCTTATTCCACAGAA+GGG 0.600897 4.1:-82505955 MS.gene24960:CDS
CAGTAATCACAACATATGAA+GGG 0.624707 4.1:-82505497 MS.gene24960:CDS
TTAAAGGAAATCCAAACCCA+AGG 0.636841 4.1:-82505832 MS.gene24960:intron
TGTTAAGGAACCTAGAGTTG+TGG 0.637272 4.1:-82505924 MS.gene24960:CDS
CTTGAAATTCCTCTTCCTAG+AGG 0.637467 4.1:+82505456 None:intergenic
TTCTTGATGATGGATATAGG+TGG 0.671599 4.1:-82505877 MS.gene24960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGATATAATATACTAA+CGG - chr4.1:82505739-82505758 MS.gene24960:intron 10.0%
!! AGCAATTATCTATAACTAAA+TGG + chr4.1:82505717-82505736 None:intergenic 20.0%
!! GAACAAATTATTAGCATATA+GGG + chr4.1:82505878-82505897 None:intergenic 20.0%
!! TATGCAAATAATACAACTTA+TGG - chr4.1:82505678-82505697 MS.gene24960:intron 20.0%
!! TGAACAAATTATTAGCATAT+AGG + chr4.1:82505879-82505898 None:intergenic 20.0%
!! TTTATGATTCTCATTATTGT+AGG - chr4.1:82505487-82505506 MS.gene24960:CDS 20.0%
!!! TTTTAGATTCATGCAATAAA+TGG - chr4.1:82505336-82505355 MS.gene24960:CDS 20.0%
! AAATTATTAGCATATAGGGT+TGG + chr4.1:82505874-82505893 None:intergenic 25.0%
! GAAATCAACCTCAAAAATAT+TGG + chr4.1:82505456-82505475 None:intergenic 25.0%
! GAAATTGATATTCTTGATGA+TGG - chr4.1:82505600-82505619 MS.gene24960:intron 25.0%
! TTGTATTATTTGCATACCTT+GGG + chr4.1:82505674-82505693 None:intergenic 25.0%
!! AATTGGTTCAAATACCAATT+CGG - chr4.1:82506252-82506271 MS.gene24960:CDS 25.0%
!! GTTCAAAATAATGTTTCTAC+AGG - chr4.1:82505894-82505913 MS.gene24960:CDS 25.0%
!!! ATATTCTTGATGATGGATAT+AGG - chr4.1:82505607-82505626 MS.gene24960:intron 25.0%
!!! ATGAAGTACCAATATTTTTG+AGG - chr4.1:82505445-82505464 MS.gene24960:CDS 25.0%
CAGTAATCACAACATATGAA+GGG - chr4.1:82505990-82506009 MS.gene24960:intron 30.0%
GATTCTCATTATTGTAGGAA+AGG - chr4.1:82505492-82505511 MS.gene24960:CDS 30.0%
GTTGTATTATTTGCATACCT+TGG + chr4.1:82505675-82505694 None:intergenic 30.0%
TACTACAAATGTGTAATCCA+AGG - chr4.1:82505920-82505939 MS.gene24960:CDS 30.0%
TATGGACAGAAAGTAGTTAA+AGG - chr4.1:82505639-82505658 MS.gene24960:intron 30.0%
TGTTTATAATAGTGACCAGA+GGG + chr4.1:82505306-82505325 None:intergenic 30.0%
TTGTTTATAATAGTGACCAG+AGG + chr4.1:82505307-82505326 None:intergenic 30.0%
! TGTTCTTGATTTTCAGAAGT+TGG + chr4.1:82506184-82506203 None:intergenic 30.0%
!! GATGAATTCTAGAAGCTTTT+TGG - chr4.1:82506222-82506241 MS.gene24960:intron 30.0%
!!! ACATCACAAACTAGTTTTTC+TGG - chr4.1:82505218-82505237 MS.gene24960:CDS 30.0%
!!! CGACTATTATTTTTAGACAG+AGG - chr4.1:82505814-82505833 MS.gene24960:intron 30.0%
AGCTATTCTTATTCCACAGA+AGG - chr4.1:82505531-82505550 MS.gene24960:CDS 35.0%
ATGGCTTCTGATCTTTCTTT+GGG - chr4.1:82505176-82505195 MS.gene24960:CDS 35.0%
CATGCAATAAATGGTGTATG+TGG - chr4.1:82505345-82505364 MS.gene24960:CDS 35.0%
CATGTAATGTCACACCTATA+AGG - chr4.1:82506092-82506111 MS.gene24960:intron 35.0%
GAATAATTAGTCACTGCTGA+AGG + chr4.1:82506118-82506137 None:intergenic 35.0%
GCAGTAATCACAACATATGA+AGG - chr4.1:82505989-82506008 MS.gene24960:intron 35.0%
GCTATTCTTATTCCACAGAA+GGG - chr4.1:82505532-82505551 MS.gene24960:CDS 35.0%
GGTCACTATTATAAACCAGA+GGG + chr4.1:82505387-82505406 None:intergenic 35.0%
TACCAATTCGGAACAATACT+CGG - chr4.1:82506264-82506283 MS.gene24960:CDS 35.0%
TTAAAGGAAATCCAAACCCA+AGG - chr4.1:82505655-82505674 MS.gene24960:intron 35.0%
TTATTTGCATACCTTGGGTT+TGG + chr4.1:82505669-82505688 None:intergenic 35.0%
! AGCTTTTTGGACAGATCAAT+TGG - chr4.1:82506235-82506254 MS.gene24960:CDS 35.0%
! CTCTGGTTTATAATAGTGAC+CGG - chr4.1:82505386-82505405 MS.gene24960:CDS 35.0%
! TTATGATGACTTGGGAATAG+AGG - chr4.1:82505247-82505266 MS.gene24960:CDS 35.0%
!! ACAGAGGAAGTACTTAACTT+TGG - chr4.1:82505830-82505849 MS.gene24960:intron 35.0%
!! AGTACTTAACTTTGGAGTTC+TGG - chr4.1:82505838-82505857 MS.gene24960:CDS 35.0%
!! GTACTGATCTTACCATCTTT+TGG + chr4.1:82505273-82505292 None:intergenic 35.0%
!! TTCTTGATGATGGATATAGG+TGG - chr4.1:82505610-82505629 MS.gene24960:intron 35.0%
!!! TCACAAACTAGTTTTTCTGG+AGG - chr4.1:82505221-82505240 MS.gene24960:CDS 35.0%
CACTATTATAAACCAGAGGG+TGG + chr4.1:82505384-82505403 None:intergenic 40.0%
CATAACCATGATGTACCTCT+AGG - chr4.1:82506016-82506035 MS.gene24960:intron 40.0%
CGGTCACTATTATAAACCAG+AGG + chr4.1:82505388-82505407 None:intergenic 40.0%
CTTGAAATTCCTCTTCCTAG+AGG + chr4.1:82506034-82506053 None:intergenic 40.0%
GCACAAAAAAATACACCCTC+CGG + chr4.1:82505408-82505427 None:intergenic 40.0%
GGAGGAGATTATGATGACTT+GGG - chr4.1:82505239-82505258 MS.gene24960:CDS 40.0%
GGATATAGGTGGAGGAAATA+TGG - chr4.1:82505621-82505640 MS.gene24960:intron 40.0%
GGTTTATAATAGTGACCGGA+GGG - chr4.1:82505390-82505409 MS.gene24960:CDS 40.0%
GTAGTTTGAACCACAACTCT+AGG + chr4.1:82505576-82505595 None:intergenic 40.0%
TGGAGGAGATTATGATGACT+TGG - chr4.1:82505238-82505257 MS.gene24960:CDS 40.0%
TGGTTTATAATAGTGACCGG+AGG - chr4.1:82505389-82505408 MS.gene24960:CDS 40.0%
TGTTAAGGAACCTAGAGTTG+TGG - chr4.1:82505563-82505582 MS.gene24960:CDS 40.0%
TTATAATGTAGACCACCCTC+TGG - chr4.1:82505369-82505388 MS.gene24960:CDS 40.0%
! AGAAGGGTGTAGAACTGTTA+AGG - chr4.1:82505548-82505567 MS.gene24960:CDS 40.0%
! GTTTTCTCACAGTACAACCT+TGG + chr4.1:82505940-82505959 None:intergenic 40.0%
! TTCTGATCTTTCTTTGGGAG+AGG - chr4.1:82505181-82505200 MS.gene24960:CDS 40.0%
!! TTGATGATGGATATAGGTGG+AGG - chr4.1:82505613-82505632 MS.gene24960:intron 40.0%
AACAGTTCTACACCCTTCTG+TGG + chr4.1:82505547-82505566 None:intergenic 45.0%
TGGGAATAGAGGCCAAAAGA+TGG - chr4.1:82505258-82505277 MS.gene24960:CDS 45.0%
! AGCCGAGTATTGTTCCGAAT+TGG + chr4.1:82506269-82506288 None:intergenic 45.0%
! CATGATGTACCTCTAGGAAG+AGG - chr4.1:82506022-82506041 MS.gene24960:intron 45.0%
! CTCTTCCTAGAGGTACATCA+TGG + chr4.1:82506024-82506043 None:intergenic 45.0%
! GTCACTGCTGAAGGCCTTAT+AGG + chr4.1:82506109-82506128 None:intergenic 50.0%
! ATAGTGACCAGAGGGCGTAC+TGG + chr4.1:82505298-82505317 None:intergenic 55.0%
! TAGTGACCAGAGGGCGTACT+GGG + chr4.1:82505297-82505316 None:intergenic 55.0%
AGTACGCCCAGTACGCCCTC+TGG - chr4.1:82505288-82505307 MS.gene24960:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 82505176 82506333 82505176 ID=MS.gene24960
chr4.1 mRNA 82505176 82506333 82505176 ID=MS.gene24960.t1;Parent=MS.gene24960
chr4.1 exon 82506230 82506333 82506230 ID=MS.gene24960.t1.exon1;Parent=MS.gene24960.t1
chr4.1 CDS 82506230 82506333 82506230 ID=cds.MS.gene24960.t1;Parent=MS.gene24960.t1
chr4.1 exon 82505833 82506000 82505833 ID=MS.gene24960.t1.exon2;Parent=MS.gene24960.t1
chr4.1 CDS 82505833 82506000 82505833 ID=cds.MS.gene24960.t1;Parent=MS.gene24960.t1
chr4.1 exon 82505176 82505593 82505176 ID=MS.gene24960.t1.exon3;Parent=MS.gene24960.t1
chr4.1 CDS 82505176 82505593 82505176 ID=cds.MS.gene24960.t1;Parent=MS.gene24960.t1
Gene Sequence

>MS.gene24960

ATGGCTTCTGATCTTTCTTTGGGAGAGGATGATTTTGATCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGACTTGGGAATAGAGGCCAAAAGATGGTAAGATCAGTACGCCCAGTACGCCCTCTGGTCACTATTATAAACAAATATTTATATTTTAGATTCATGCAATAAATGGTGTATGTGGTTTATAATGTAGACCACCCTCTGGTTTATAATAGTGACCGGAGGGTGTATTTTTTTGTGCTTGCAATGCTAATTTGCATGAAGTACCAATATTTTTGAGGTTGATTTCAATATCACTAATTTATGATTCTCATTATTGTAGGAAAGGAGAGAATGAAAATGATAGCTATTCTTATTCCACAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAACCCAAGGTATGCAAATAATACAACTTATGGAAACAAACAAATGCCATTTAGTTATAGATAATTGCTTCTAAATGATATAATATACTAACGGAAGAAATCAACACAATTAATCATTTTCTTAAAAATCGTGCACAAATCTTAAACGACTATTATTTTTAGACAGAGGAAGTACTTAACTTTGGAGTTCTGGATATTTGTTACCAACCCTATATGCTAATAATTTGTTCAAAATAATGTTTCTACAGGAGCTACTACAAATGTGTAATCCAAGGTTGTACTGTGAGAAAACATGTTGAGAGAGCTTCACATGATATTAAAGCAGTAATCACAACATATGAAGGGAAACATAACCATGATGTACCTCTAGGAAGAGGAATTTCAAGCAGTAGCATAAACAACAGAACTTCTCTTAACAACAATACATGTAATGTCACACCTATAAGGCCTTCAGCAGTGACTAATTATTCTAGCTTAGCAAATTTTACAAATTCACATCATGATTCAAAGCTACCAACTTCTGAAAATCAAGAACATTTTCAGCTAGACATGTTGATGAATTCTAGAAGCTTTTTGGACAGATCAATTGGTTCAAATACCAATTCGGAACAATACTCGGCTAAAGATGACTCATTCTTTCAATCTTTTGTATTGAAGAACTTTTAA
Protein sequence

>MS.gene24960.t1

MASDLSLGEDDFDQTSQTSFSGGDYDDLGIEAKRWKGENENDSYSYSTEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCTVRKHVERASHDIKAVITTYEGKHNHDVPLGRGISSSSINNRTSLNNNTCNVTPIRPSAVTNYSSLANFTNSHHDSKLPTSENQEHFQLDMLMNSRSFLDRSIGSNTNSEQYSAKDDSFFQSFVLKNF