Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25042.t1 | XP_003627447.1 | 96.9 | 392 | 11 | 1 | 1 | 392 | 1 | 391 | 5.20E-201 | 710.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25042.t1 | G7L969 | 96.9 | 392 | 11 | 1 | 1 | 392 | 1 | 391 | 3.7e-201 | 710.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051914 | MS.gene25042 | 0.820185 | 7.84E-53 | -1.69E-46 |
| MS.gene054633 | MS.gene25042 | 0.800645 | 1.31E-48 | -1.69E-46 |
| MS.gene054662 | MS.gene25042 | 0.810953 | 8.92E-51 | -1.69E-46 |
| MS.gene05640 | MS.gene25042 | 0.826302 | 2.92E-54 | -1.69E-46 |
| MS.gene057367 | MS.gene25042 | 0.817075 | 3.98E-52 | -1.69E-46 |
| MS.gene058128 | MS.gene25042 | 0.80223 | 6.19E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene25042 | 0.800381 | 1.48E-48 | -1.69E-46 |
| MS.gene06093 | MS.gene25042 | 0.821227 | 4.52E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25042.t1 | MTR_8g023130 | 98.214 | 392 | 6 | 1 | 1 | 392 | 1 | 391 | 0.0 | 792 |
| MS.gene25042.t1 | MTR_8g079482 | 28.529 | 333 | 188 | 16 | 87 | 392 | 152 | 461 | 1.02e-12 | 70.1 |
| MS.gene25042.t1 | MTR_8g079482 | 28.657 | 335 | 185 | 17 | 87 | 392 | 62 | 371 | 1.43e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25042.t1 | AT1G53860 | 41.809 | 409 | 135 | 20 | 16 | 392 | 32 | 369 | 1.27e-72 | 234 |
| MS.gene25042.t1 | AT1G53860 | 44.152 | 342 | 109 | 16 | 64 | 392 | 29 | 301 | 1.93e-67 | 219 |
| MS.gene25042.t1 | AT2G02170 | 29.261 | 352 | 204 | 13 | 56 | 392 | 98 | 419 | 2.18e-23 | 102 |
| MS.gene25042.t1 | AT2G02170 | 29.261 | 352 | 204 | 13 | 56 | 392 | 98 | 419 | 2.18e-23 | 102 |
| MS.gene25042.t1 | AT2G02170 | 29.261 | 352 | 204 | 13 | 56 | 392 | 98 | 419 | 2.18e-23 | 102 |
| MS.gene25042.t1 | AT2G02170 | 29.261 | 352 | 204 | 13 | 56 | 392 | 98 | 419 | 2.18e-23 | 102 |
| MS.gene25042.t1 | AT2G02170 | 30.625 | 320 | 178 | 13 | 91 | 392 | 1 | 294 | 4.94e-23 | 99.8 |
| MS.gene25042.t1 | AT2G02170 | 30.625 | 320 | 178 | 13 | 91 | 392 | 1 | 294 | 4.94e-23 | 99.8 |
| MS.gene25042.t1 | AT1G30320 | 27.019 | 322 | 167 | 14 | 89 | 392 | 170 | 441 | 5.42e-13 | 70.9 |
| MS.gene25042.t1 | AT1G67590 | 31.013 | 158 | 86 | 3 | 235 | 392 | 141 | 275 | 1.55e-12 | 68.2 |
| MS.gene25042.t1 | AT1G67590 | 31.013 | 158 | 86 | 3 | 235 | 392 | 141 | 275 | 4.67e-12 | 67.4 |
Find 63 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTCTGCTTTAGCATTT+TGG | 0.143930 | 8.1:+77457070 | None:intergenic |
| TTAGAAGGAAAACTCTTTCT+TGG | 0.240297 | 8.1:+77459243 | None:intergenic |
| GGTTCTGAATACCTGAATTT+TGG | 0.242708 | 8.1:+77458053 | None:intergenic |
| TCAAAGTTCTTCTTCAAGTT+TGG | 0.247781 | 8.1:-77459016 | MS.gene25042:CDS |
| TCTTCACTTGAGCTCCAATT+TGG | 0.269164 | 8.1:+77457717 | None:intergenic |
| ATGATTTGGTTGCGCCAAAT+TGG | 0.298089 | 8.1:-77457731 | MS.gene25042:CDS |
| GGTGTTTCATCTTCAGAATC+TGG | 0.311642 | 8.1:-77459144 | MS.gene25042:CDS |
| TGGAACAACAAAGTATGATT+TGG | 0.316654 | 8.1:-77457745 | MS.gene25042:CDS |
| CCAACAGACATAGTACTAAA+AGG | 0.331635 | 8.1:-77458949 | MS.gene25042:intron |
| TCTTCTTCTTCAAGCATTGT+TGG | 0.339564 | 8.1:-77459276 | MS.gene25042:CDS |
| TCAGCATCATCCCATTTAGA+AGG | 0.351555 | 8.1:+77459228 | None:intergenic |
| GGAACAAGACAATGTGATAA+TGG | 0.370159 | 8.1:-77459123 | MS.gene25042:CDS |
| TAATGGCTTTAAGCAGAAAA+TGG | 0.377630 | 8.1:-77459106 | MS.gene25042:CDS |
| TCTGCATTGGTATTTGAAAC+TGG | 0.378820 | 8.1:+77459393 | None:intergenic |
| AGAAGAATAAGTGCTGTCTT+AGG | 0.401449 | 8.1:-77457605 | MS.gene25042:intron |
| AACAGTGTTGGAGCTTTCAA+TGG | 0.415019 | 8.1:-77458985 | MS.gene25042:CDS |
| CTTCTCATCGTCTTCCCAAC+TGG | 0.417797 | 8.1:+77457623 | None:intergenic |
| TTTGGAGGTTTATCCATGCT+TGG | 0.417920 | 8.1:+77457088 | None:intergenic |
| TCAATGAAATCATCGACAAA+AGG | 0.424214 | 8.1:+77459468 | None:intergenic |
| GAAGTTGTGGAACTTCCTAA+TGG | 0.426219 | 8.1:+77457921 | None:intergenic |
| AGTGGTCTACCAGGTGTAGA+AGG | 0.428314 | 8.1:+77459318 | None:intergenic |
| CTCAAGTGAAGAGGAGGAAA+AGG | 0.432830 | 8.1:-77457706 | MS.gene25042:CDS |
| TGCTAGTAGGTCAGGACCAT+TGG | 0.447997 | 8.1:-77457847 | MS.gene25042:CDS |
| CATAATAACAACACTTTGAA+AGG | 0.458507 | 8.1:-77459165 | MS.gene25042:CDS |
| ACCTACTAGCAGGAGTGTTA+TGG | 0.458860 | 8.1:+77457859 | None:intergenic |
| AAAGTGTTGTTATTATGAGC+AGG | 0.466876 | 8.1:+77459171 | None:intergenic |
| GGCACAGAAATGACTCCATT+AGG | 0.474794 | 8.1:-77457936 | MS.gene25042:CDS |
| TATTCAGAACCAACAAAAGA+AGG | 0.475308 | 8.1:-77458041 | MS.gene25042:CDS |
| AAGGAAAACTCTTTCTTGGA+AGG | 0.487386 | 8.1:+77459247 | None:intergenic |
| AACACTCCTGCTAGTAGGTC+AGG | 0.488893 | 8.1:-77457855 | MS.gene25042:CDS |
| TGATTGTATAGCTGCCAGTT+GGG | 0.489579 | 8.1:-77457637 | MS.gene25042:CDS |
| AGGAAATATCGAAAAGTTTG+AGG | 0.497964 | 8.1:-77457686 | MS.gene25042:CDS |
| CAATGAAATCATCGACAAAA+GGG | 0.506429 | 8.1:+77459469 | None:intergenic |
| AAGCTGAAAAGTGGTCTACC+AGG | 0.520352 | 8.1:+77459309 | None:intergenic |
| CTGATTGTATAGCTGCCAGT+TGG | 0.520802 | 8.1:-77457638 | MS.gene25042:CDS |
| ACAGTGTTGGAGCTTTCAAT+GGG | 0.526768 | 8.1:-77458984 | MS.gene25042:CDS |
| TTTAGTACTATGTCTGTTGG+TGG | 0.529642 | 8.1:+77458952 | None:intergenic |
| GAAGAACTGAAGCTGAAAAG+TGG | 0.537400 | 8.1:+77459300 | None:intergenic |
| CTTTAAGCAGAAAATGGATG+AGG | 0.543055 | 8.1:-77459100 | MS.gene25042:CDS |
| GAGGTTAAACACAAAGATGT+TGG | 0.548887 | 8.1:-77457957 | MS.gene25042:CDS |
| CTAGAAGCTCCTTCTACACC+TGG | 0.550547 | 8.1:-77459327 | MS.gene25042:CDS |
| TTGGACCACAATAACAGTGT+TGG | 0.565677 | 8.1:-77458997 | MS.gene25042:CDS |
| AAGCTCCAACACTGTTATTG+TGG | 0.569434 | 8.1:+77458992 | None:intergenic |
| GCAGGAGTGTTATGGCGCGC+AGG | 0.575784 | 8.1:+77457867 | None:intergenic |
| AATGGTCCTGACCTACTAGC+AGG | 0.581765 | 8.1:+77457849 | None:intergenic |
| ATTCAGAAATCAAGCTTGTG+AGG | 0.593668 | 8.1:-77458012 | MS.gene25042:CDS |
| GCCATAACACTCCTGCTAGT+AGG | 0.598039 | 8.1:-77457860 | MS.gene25042:CDS |
| TTTAAGCAGAAAATGGATGA+GGG | 0.600087 | 8.1:-77459099 | MS.gene25042:CDS |
| AAAATGCTAAAGCAGAAGCC+AGG | 0.601345 | 8.1:-77457068 | MS.gene25042:CDS |
| ATTCAGAACCAACAAAAGAA+GGG | 0.609217 | 8.1:-77458040 | MS.gene25042:CDS |
| TTGGAGCTCAAGTGAAGAGG+AGG | 0.612723 | 8.1:-77457712 | MS.gene25042:CDS |
| TATGTGTAATGCACATGGGA+TGG | 0.620594 | 8.1:-77456638 | MS.gene25042:CDS |
| AAATTGGAGCTCAAGTGAAG+AGG | 0.625563 | 8.1:-77457715 | MS.gene25042:CDS |
| TTATCTAACATCGATCGCAA+TGG | 0.626657 | 8.1:-77457822 | MS.gene25042:CDS |
| TTTAGGTTCAGCTTGCAAAG+TGG | 0.629888 | 8.1:+77459444 | None:intergenic |
| TAAAGATTTGACAAACTCAG+AGG | 0.630560 | 8.1:+77459416 | None:intergenic |
| AGATTTATGTGTAATGCACA+TGG | 0.651320 | 8.1:-77456643 | MS.gene25042:CDS |
| TTACACAGAGGTGATTCATG+AGG | 0.662035 | 8.1:-77457976 | MS.gene25042:CDS |
| TCGATGTTAGATAATGCCAA+TGG | 0.663249 | 8.1:+77457831 | None:intergenic |
| GCAGGAGATGAACTCTTGAA+CGG | 0.677595 | 8.1:+77457885 | None:intergenic |
| TGTGTGACATCTTGAAGTTG+TGG | 0.692863 | 8.1:+77457908 | None:intergenic |
| GATTTATGTGTAATGCACAT+GGG | 0.713044 | 8.1:-77456642 | MS.gene25042:CDS |
| AATGCATGAATCTTACACAG+AGG | 0.789720 | 8.1:-77457988 | MS.gene25042:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAATAATAAAAAGTT+TGG | + | chr8.1:77457331-77457350 | None:intergenic | 10.0% |
| !!! | TTATATTTTCTCATAAATTT+TGG | - | chr8.1:77459121-77459140 | MS.gene25042:CDS | 10.0% |
| !! | TAACAATAATAAACAATCTA+TGG | + | chr8.1:77459211-77459230 | None:intergenic | 15.0% |
| !!! | AATTTTATTAATTCAACAAC+TGG | - | chr8.1:77458016-77458035 | MS.gene25042:CDS | 15.0% |
| !!! | CGATTAAATTTTTAAAACAT+TGG | + | chr8.1:77458574-77458593 | None:intergenic | 15.0% |
| !!! | GTTGAAAATATCTTTTAATT+AGG | + | chr8.1:77458933-77458952 | None:intergenic | 15.0% |
| !! | ATTTAATCGAAAAGTTCAAT+TGG | - | chr8.1:77458585-77458604 | MS.gene25042:intron | 20.0% |
| !! | TGTTAACTACTTAATTTAGA+GGG | + | chr8.1:77459326-77459345 | None:intergenic | 20.0% |
| !! | TGTTAATGATAGTTTACTTA+TGG | - | chr8.1:77459226-77459245 | MS.gene25042:CDS | 20.0% |
| !! | TTGTTAACTACTTAATTTAG+AGG | + | chr8.1:77459327-77459346 | None:intergenic | 20.0% |
| !!! | CAATGAAAAAGTTCAAATTT+TGG | + | chr8.1:77457232-77457251 | None:intergenic | 20.0% |
| !!! | CATTTTTCTAAACTTCAATT+TGG | - | chr8.1:77458371-77458390 | MS.gene25042:intron | 20.0% |
| !!! | TCATTTTTGCAAATTATTAC+CGG | - | chr8.1:77457586-77457605 | MS.gene25042:intron | 20.0% |
| !!! | TTCATATTTTAAGTTTGGTA+TGG | + | chr8.1:77459379-77459398 | None:intergenic | 20.0% |
| !!! | TTTTAAAACATTGGTTTGTA+AGG | + | chr8.1:77458565-77458584 | None:intergenic | 20.0% |
| ! | AAACATTGCTTACAGTTTAA+CGG | - | chr8.1:77458725-77458744 | MS.gene25042:intron | 25.0% |
| ! | ATTGTAATTTGAATTGATGC+AGG | - | chr8.1:77459002-77459021 | MS.gene25042:CDS | 25.0% |
| ! | CATAATAACAACACTTTGAA+AGG | - | chr8.1:77456971-77456990 | MS.gene25042:intron | 25.0% |
| ! | GTTAAAACCTTGTCATTAAA+TGG | + | chr8.1:77457913-77457932 | None:intergenic | 25.0% |
| ! | TCTTGAGAAGAGTTTATAAA+GGG | - | chr8.1:77457641-77457660 | MS.gene25042:CDS | 25.0% |
| ! | TTCTTGAGAAGAGTTTATAA+AGG | - | chr8.1:77457640-77457659 | MS.gene25042:CDS | 25.0% |
| !! | AAAGAGTTTTCCTTCTAAAT+GGG | - | chr8.1:77456898-77456917 | MS.gene25042:intron | 25.0% |
| !! | TTTAAGTCTCATTCTGATTT+TGG | - | chr8.1:77457387-77457406 | MS.gene25042:intron | 25.0% |
| !!! | AAATTTTGGTTAGTTTGCAA+TGG | - | chr8.1:77459135-77459154 | MS.gene25042:CDS | 25.0% |
| !!! | GACGATTCATATTTTAAGTT+TGG | + | chr8.1:77459384-77459403 | None:intergenic | 25.0% |
| !!! | TACCTGAATTTTGGTAAAAT+CGG | + | chr8.1:77458077-77458096 | None:intergenic | 25.0% |
| !!! | TCTTCACTTAGTTATTTTAG+CGG | - | chr8.1:77458628-77458647 | MS.gene25042:intron | 25.0% |
| AAAAGCTTGAGGTAATTCAT+TGG | - | chr8.1:77459095-77459114 | MS.gene25042:CDS | 30.0% | |
| AACATTGCTTACAGTTTAAC+GGG | - | chr8.1:77458726-77458745 | MS.gene25042:intron | 30.0% | |
| AACTACTTAATTTAGAGGGT+GGG | + | chr8.1:77459322-77459341 | None:intergenic | 30.0% | |
| AATTAGGACCTATGTATCAT+TGG | + | chr8.1:77458917-77458936 | None:intergenic | 30.0% | |
| AGATTTATGTGTAATGCACA+TGG | - | chr8.1:77459493-77459512 | MS.gene25042:CDS | 30.0% | |
| AGGAAATATCGAAAAGTTTG+AGG | - | chr8.1:77458450-77458469 | MS.gene25042:intron | 30.0% | |
| ATAACTAAGTGAAGAAAGTG+TGG | + | chr8.1:77458623-77458642 | None:intergenic | 30.0% | |
| ATTAGCCCATGAATGAAAAT+TGG | - | chr8.1:77457857-77457876 | MS.gene25042:CDS | 30.0% | |
| ATTAGGACCTATGTATCATT+GGG | + | chr8.1:77458916-77458935 | None:intergenic | 30.0% | |
| ATTCAGAACCAACAAAAGAA+GGG | - | chr8.1:77458096-77458115 | MS.gene25042:intron | 30.0% | |
| CAATGAAATCATCGACAAAA+GGG | + | chr8.1:77456670-77456689 | None:intergenic | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+GGG | - | chr8.1:77457642-77457661 | MS.gene25042:CDS | 30.0% | |
| GAACATGTATAGCAAAAACA+AGG | - | chr8.1:77456622-77456641 | MS.gene25042:CDS | 30.0% | |
| GATTTATGTGTAATGCACAT+GGG | - | chr8.1:77459494-77459513 | MS.gene25042:CDS | 30.0% | |
| TAAAGATTTGACAAACTCAG+AGG | + | chr8.1:77456723-77456742 | None:intergenic | 30.0% | |
| TAACTACTTAATTTAGAGGG+TGG | + | chr8.1:77459323-77459342 | None:intergenic | 30.0% | |
| TATTCAGAACCAACAAAAGA+AGG | - | chr8.1:77458095-77458114 | MS.gene25042:intron | 30.0% | |
| TATTTGGCCATTTAATGACA+AGG | - | chr8.1:77457903-77457922 | MS.gene25042:CDS | 30.0% | |
| TCAATGAAATCATCGACAAA+AGG | + | chr8.1:77456671-77456690 | None:intergenic | 30.0% | |
| TGGAACAACAAAGTATGATT+TGG | - | chr8.1:77458391-77458410 | MS.gene25042:intron | 30.0% | |
| TTAAAAATCAAACCTGCATC+AGG | + | chr8.1:77458706-77458725 | None:intergenic | 30.0% | |
| TTAAATGGCCAAATAGAAAG+AGG | + | chr8.1:77457898-77457917 | None:intergenic | 30.0% | |
| TTAGAAGGAAAACTCTTTCT+TGG | + | chr8.1:77456896-77456915 | None:intergenic | 30.0% | |
| TTGGTATCATTGTTAGTGTT+GGG | - | chr8.1:77457736-77457755 | MS.gene25042:CDS | 30.0% | |
| TTTAAGCAGAAAATGGATGA+GGG | - | chr8.1:77457037-77457056 | MS.gene25042:intron | 30.0% | |
| ! | AATAAGAACCCTTCTTTTGT+TGG | + | chr8.1:77458107-77458126 | None:intergenic | 30.0% |
| ! | CTCTTCCAATTTTCATTCAT+GGG | + | chr8.1:77457865-77457884 | None:intergenic | 30.0% |
| ! | GAAAGAGTTTTCCTTCTAAA+TGG | - | chr8.1:77456897-77456916 | MS.gene25042:intron | 30.0% |
| ! | TCAAAGTTCTTCTTCAAGTT+TGG | - | chr8.1:77457120-77457139 | MS.gene25042:intron | 30.0% |
| ! | TCTCTTCCAATTTTCATTCA+TGG | + | chr8.1:77457866-77457885 | None:intergenic | 30.0% |
| ! | TGCATTCATCTTATTTGCAT+TGG | - | chr8.1:77458969-77458988 | MS.gene25042:CDS | 30.0% |
| ! | TTTTGCAAATTATTACCGGT+GGG | - | chr8.1:77457590-77457609 | MS.gene25042:intron | 30.0% |
| ! | TTTTTGCAAATTATTACCGG+TGG | - | chr8.1:77457589-77457608 | MS.gene25042:intron | 30.0% |
| !! | AAAGTGTTGTTATTATGAGC+AGG | + | chr8.1:77456968-77456987 | None:intergenic | 30.0% |
| !! | TAATGGCTTTAAGCAGAAAA+TGG | - | chr8.1:77457030-77457049 | MS.gene25042:intron | 30.0% |
| AAGAAGCAAAAATCCAAGCA+TGG | - | chr8.1:77459035-77459054 | MS.gene25042:CDS | 35.0% | |
| AAGGAAAACTCTTTCTTGGA+AGG | + | chr8.1:77456892-77456911 | None:intergenic | 35.0% | |
| AATACTTCCATGACATTGCT+TGG | - | chr8.1:77458750-77458769 | MS.gene25042:intron | 35.0% | |
| AATGCATGAATCTTACACAG+AGG | - | chr8.1:77458148-77458167 | MS.gene25042:intron | 35.0% | |
| AATGGGATGATGCTGAAAAA+TGG | - | chr8.1:77456915-77456934 | MS.gene25042:intron | 35.0% | |
| ATACTTCCATGACATTGCTT+GGG | - | chr8.1:77458751-77458770 | MS.gene25042:intron | 35.0% | |
| ATTCAGAAATCAAGCTTGTG+AGG | - | chr8.1:77458124-77458143 | MS.gene25042:intron | 35.0% | |
| CAGACATAGTACTAAAAGGT+TGG | - | chr8.1:77457191-77457210 | MS.gene25042:intron | 35.0% | |
| CCAAATAGAAAGAGGAAGTT+GGG | + | chr8.1:77457890-77457909 | None:intergenic | 35.0% | |
| CCAACAGACATAGTACTAAA+AGG | - | chr8.1:77457187-77457206 | MS.gene25042:intron | 35.0% | |
| CTAACTCAACCTTACAAAAC+CGG | + | chr8.1:77457688-77457707 | None:intergenic | 35.0% | |
| CTTTAAGCAGAAAATGGATG+AGG | - | chr8.1:77457036-77457055 | MS.gene25042:intron | 35.0% | |
| GAGGTTAAACACAAAGATGT+TGG | - | chr8.1:77458179-77458198 | MS.gene25042:intron | 35.0% | |
| GAGTTATGTAGCACTTATAC+TGG | - | chr8.1:77457517-77457536 | MS.gene25042:intron | 35.0% | |
| GCTACATAACTCAGAATACA+AGG | + | chr8.1:77457509-77457528 | None:intergenic | 35.0% | |
| GGAACAAGACAATGTGATAA+TGG | - | chr8.1:77457013-77457032 | MS.gene25042:intron | 35.0% | |
| GTTGGTATCATTGTTAGTGT+TGG | - | chr8.1:77457735-77457754 | MS.gene25042:CDS | 35.0% | |
| TCGATGTTAGATAATGCCAA+TGG | + | chr8.1:77458308-77458327 | None:intergenic | 35.0% | |
| TGTGTATCATTGTTAGTGTC+TGG | - | chr8.1:77457833-77457852 | MS.gene25042:CDS | 35.0% | |
| TTATCTAACATCGATCGCAA+TGG | - | chr8.1:77458314-77458333 | MS.gene25042:intron | 35.0% | |
| TTTAGTACTATGTCTGTTGG+TGG | + | chr8.1:77457187-77457206 | None:intergenic | 35.0% | |
| ! | AACGGTTTTCGATGTAATGA+TGG | - | chr8.1:77459416-77459435 | MS.gene25042:CDS | 35.0% |
| ! | AGAAGAATAAGTGCTGTCTT+AGG | - | chr8.1:77458531-77458550 | MS.gene25042:intron | 35.0% |
| ! | CAAACTCAGAGGTTTCTTTT+AGG | + | chr8.1:77456712-77456731 | None:intergenic | 35.0% |
| ! | CCTTTTAGTACTATGTCTGT+TGG | + | chr8.1:77457190-77457209 | None:intergenic | 35.0% |
| ! | TCTGCATTGGTATTTGAAAC+TGG | + | chr8.1:77456746-77456765 | None:intergenic | 35.0% |
| ! | TCTTCTTCTTCAAGCATTGT+TGG | - | chr8.1:77456860-77456879 | MS.gene25042:intron | 35.0% |
| !! | AGCCGATTTTACCAAAATTC+AGG | - | chr8.1:77458072-77458091 | MS.gene25042:CDS | 35.0% |
| !! | AGGGTTTTTCAGAGAAATCA+AGG | - | chr8.1:77457056-77457075 | MS.gene25042:CDS | 35.0% |
| !! | GGGTTTTTCAGAGAAATCAA+GGG | - | chr8.1:77457057-77457076 | MS.gene25042:CDS | 35.0% |
| !!! | GGTTCTGAATACCTGAATTT+TGG | + | chr8.1:77458086-77458105 | None:intergenic | 35.0% |
| AAAATGCTAAAGCAGAAGCC+AGG | - | chr8.1:77459068-77459087 | MS.gene25042:CDS | 40.0% | |
| AAATTGGAGCTCAAGTGAAG+AGG | - | chr8.1:77458421-77458440 | MS.gene25042:intron | 40.0% | |
| AAGCTCCAACACTGTTATTG+TGG | + | chr8.1:77457147-77457166 | None:intergenic | 40.0% | |
| ACACTCTTAGGTCAAGTCAA+TGG | + | chr8.1:77457446-77457465 | None:intergenic | 40.0% | |
| ACTGACACAATTGATGTCAC+GGG | + | chr8.1:77457713-77457732 | None:intergenic | 40.0% | |
| AGAATCCTACCTATCCGATA+TGG | + | chr8.1:77457624-77457643 | None:intergenic | 40.0% | |
| AGCAGTCACGATAATAGTTG+CGG | - | chr8.1:77457934-77457953 | MS.gene25042:CDS | 40.0% | |
| AGTGGAACCCAATGATACAT+AGG | - | chr8.1:77458906-77458925 | MS.gene25042:intron | 40.0% | |
| CACTCTTAGGTCAAGTCAAT+GGG | + | chr8.1:77457445-77457464 | None:intergenic | 40.0% | |
| CACTGACACAATTGATGTCA+CGG | + | chr8.1:77457714-77457733 | None:intergenic | 40.0% | |
| CATCAATTGTGTCAGTGTGT+TGG | - | chr8.1:77457717-77457736 | MS.gene25042:CDS | 40.0% | |
| CCCAACTTCCTCTTTCTATT+TGG | - | chr8.1:77457887-77457906 | MS.gene25042:CDS | 40.0% | |
| GAAAACCGTTAGATCACGAT+CGG | + | chr8.1:77459406-77459425 | None:intergenic | 40.0% | |
| GAAGAACTGAAGCTGAAAAG+TGG | + | chr8.1:77456839-77456858 | None:intergenic | 40.0% | |
| GAAGTTGTGGAACTTCCTAA+TGG | + | chr8.1:77458218-77458237 | None:intergenic | 40.0% | |
| GAATCCTACCTATCCGATAT+GGG | + | chr8.1:77457623-77457642 | None:intergenic | 40.0% | |
| GAGAAGAGTTTATAAAGGGG+AGG | - | chr8.1:77457645-77457664 | MS.gene25042:CDS | 40.0% | |
| GATTTAGTCCCATATCGGAT+AGG | - | chr8.1:77457612-77457631 | MS.gene25042:CDS | 40.0% | |
| GCCAAATAGAAAGAGGAAGT+TGG | + | chr8.1:77457891-77457910 | None:intergenic | 40.0% | |
| GGTGTTTCATCTTCAGAATC+TGG | - | chr8.1:77456992-77457011 | MS.gene25042:intron | 40.0% | |
| TATGTGTAATGCACATGGGA+TGG | - | chr8.1:77459498-77459517 | MS.gene25042:CDS | 40.0% | |
| TCAGCATCATCCCATTTAGA+AGG | + | chr8.1:77456911-77456930 | None:intergenic | 40.0% | |
| TCTTCACTTGAGCTCCAATT+TGG | + | chr8.1:77458422-77458441 | None:intergenic | 40.0% | |
| TGATTGTATAGCTGCCAGTT+GGG | - | chr8.1:77458499-77458518 | MS.gene25042:intron | 40.0% | |
| TGTATCATTGGGTTCCACTT+TGG | + | chr8.1:77458905-77458924 | None:intergenic | 40.0% | |
| TGTGACAACCGTATACATGT+TGG | + | chr8.1:77457555-77457574 | None:intergenic | 40.0% | |
| TGTGTGACATCTTGAAGTTG+TGG | + | chr8.1:77458231-77458250 | None:intergenic | 40.0% | |
| TTAATTTAGAGGGTGGGTGA+GGG | + | chr8.1:77459316-77459335 | None:intergenic | 40.0% | |
| TTACACAGAGGTGATTCATG+AGG | - | chr8.1:77458160-77458179 | MS.gene25042:intron | 40.0% | |
| TTCAACCAACCTACACTCTT+AGG | + | chr8.1:77457458-77457477 | None:intergenic | 40.0% | |
| TTGGACCACAATAACAGTGT+TGG | - | chr8.1:77457139-77457158 | MS.gene25042:intron | 40.0% | |
| TTTGGAGGTTTATCCATGCT+TGG | + | chr8.1:77459051-77459070 | None:intergenic | 40.0% | |
| ! | AACAGTGTTGGAGCTTTCAA+TGG | - | chr8.1:77457151-77457170 | MS.gene25042:intron | 40.0% |
| ! | ACAGTGTTGGAGCTTTCAAT+GGG | - | chr8.1:77457152-77457171 | MS.gene25042:intron | 40.0% |
| ! | AGTGAAGAAAGTGTGGTTCA+CGG | + | chr8.1:77458616-77458635 | None:intergenic | 40.0% |
| ! | CTTCTGCTTTAGCATTTTGG+AGG | + | chr8.1:77459066-77459085 | None:intergenic | 40.0% |
| ! | GAGTCTTCTGTTTTCTGCAT+TGG | + | chr8.1:77456759-77456778 | None:intergenic | 40.0% |
| ! | TGGCTTCTGCTTTAGCATTT+TGG | + | chr8.1:77459069-77459088 | None:intergenic | 40.0% |
| ! | TTGACTTGACCTAAGAGTGT+AGG | - | chr8.1:77457446-77457465 | MS.gene25042:intron | 40.0% |
| ! | TTTAGGTTCAGCTTGCAAAG+TGG | + | chr8.1:77456695-77456714 | None:intergenic | 40.0% |
| !! | ATGATTTGGTTGCGCCAAAT+TGG | - | chr8.1:77458405-77458424 | MS.gene25042:intron | 40.0% |
| !! | CGGTTTTGTAAGGTTGAGTT+AGG | - | chr8.1:77457686-77457705 | MS.gene25042:CDS | 40.0% |
| !!! | TACCTCAAGCTTTTTTGACC+TGG | + | chr8.1:77459089-77459108 | None:intergenic | 40.0% |
| AACGGTCAGGATTGCATCAA+TGG | + | chr8.1:77458788-77458807 | None:intergenic | 45.0% | |
| AAGCAGCTTGAACTGTCTGT+AGG | - | chr8.1:77459466-77459485 | MS.gene25042:CDS | 45.0% | |
| AAGCTGAAAAGTGGTCTACC+AGG | + | chr8.1:77456830-77456849 | None:intergenic | 45.0% | |
| ACACAACTATGGCACCAAAG+TGG | - | chr8.1:77458888-77458907 | MS.gene25042:intron | 45.0% | |
| ACCGTATACATGTTGGACAC+CGG | + | chr8.1:77457548-77457567 | None:intergenic | 45.0% | |
| AGCACTTATACTGGTGTGTC+CGG | - | chr8.1:77457526-77457545 | MS.gene25042:intron | 45.0% | |
| AGCCAGGTCAAAAAAGCTTG+AGG | - | chr8.1:77459084-77459103 | MS.gene25042:CDS | 45.0% | |
| AGGTCTAGTAGTGTGGTCAA+AGG | + | chr8.1:77459284-77459303 | None:intergenic | 45.0% | |
| ATCAACACACATCAACGGTC+AGG | + | chr8.1:77458801-77458820 | None:intergenic | 45.0% | |
| ATCGTCCGATCGTGATCTAA+CGG | - | chr8.1:77459398-77459417 | MS.gene25042:CDS | 45.0% | |
| CACCCATCAACACACATCAA+CGG | + | chr8.1:77458806-77458825 | None:intergenic | 45.0% | |
| CTCAAGTGAAGAGGAGGAAA+AGG | - | chr8.1:77458430-77458449 | MS.gene25042:intron | 45.0% | |
| CTGACACAATTGATGTCACG+GGG | + | chr8.1:77457712-77457731 | None:intergenic | 45.0% | |
| CTGATTGTATAGCTGCCAGT+TGG | - | chr8.1:77458498-77458517 | MS.gene25042:intron | 45.0% | |
| CTTAATTTAGAGGGTGGGTG+AGG | + | chr8.1:77459317-77459336 | None:intergenic | 45.0% | |
| GATATGGGACTAAATCCCAC+CGG | + | chr8.1:77457608-77457627 | None:intergenic | 45.0% | |
| GATTGCATCAATGGCACCAA+TGG | + | chr8.1:77458779-77458798 | None:intergenic | 45.0% | |
| GCAGGAGATGAACTCTTGAA+CGG | + | chr8.1:77458254-77458273 | None:intergenic | 45.0% | |
| GGCACAGAAATGACTCCATT+AGG | - | chr8.1:77458200-77458219 | MS.gene25042:intron | 45.0% | |
| GGTGGGATTTAGTCCCATAT+CGG | - | chr8.1:77457607-77457626 | MS.gene25042:CDS | 45.0% | |
| TAGTCCCATATCGGATAGGT+AGG | - | chr8.1:77457616-77457635 | MS.gene25042:CDS | 45.0% | |
| TCCGGTGTCCAACATGTATA+CGG | - | chr8.1:77457544-77457563 | MS.gene25042:intron | 45.0% | |
| TGACCGTTGATGTGTGTTGA+TGG | - | chr8.1:77458800-77458819 | MS.gene25042:intron | 45.0% | |
| ! | CTTGACCTAAGAGTGTAGGT+TGG | - | chr8.1:77457450-77457469 | MS.gene25042:intron | 45.0% |
| ! | GACCGTTGATGTGTGTTGAT+GGG | - | chr8.1:77458801-77458820 | MS.gene25042:intron | 45.0% |
| ! | TGATGTGTGTTGATGGGTGT+GGG | - | chr8.1:77458807-77458826 | MS.gene25042:intron | 45.0% |
| ! | TTGATGTGTGTTGATGGGTG+TGG | - | chr8.1:77458806-77458825 | MS.gene25042:intron | 45.0% |
| !! | ACCTACTAGCAGGAGTGTTA+TGG | + | chr8.1:77458280-77458299 | None:intergenic | 45.0% |
| AACACTCCTGCTAGTAGGTC+AGG | - | chr8.1:77458281-77458300 | MS.gene25042:intron | 50.0% | |
| AATGGTCCTGACCTACTAGC+AGG | + | chr8.1:77458290-77458309 | None:intergenic | 50.0% | |
| AGTGGTCTACCAGGTGTAGA+AGG | + | chr8.1:77456821-77456840 | None:intergenic | 50.0% | |
| ATCAAACCTGCATCAGGTCG+AGG | + | chr8.1:77458700-77458719 | None:intergenic | 50.0% | |
| ATGGCACCCAAGCAATGTCA+TGG | + | chr8.1:77458760-77458779 | None:intergenic | 50.0% | |
| CAGCTTGAACTGTCTGTAGG+TGG | - | chr8.1:77459469-77459488 | MS.gene25042:CDS | 50.0% | |
| CTAGAAGCTCCTTCTACACC+TGG | - | chr8.1:77456809-77456828 | MS.gene25042:intron | 50.0% | |
| CTTCTCATCGTCTTCCCAAC+TGG | + | chr8.1:77458516-77458535 | None:intergenic | 50.0% | |
| GAGGTTGAGGTCTAGTAGTG+TGG | + | chr8.1:77459291-77459310 | None:intergenic | 50.0% | |
| GCACCAATGGCACACAACTA+TGG | - | chr8.1:77458877-77458896 | MS.gene25042:intron | 50.0% | |
| GCCATAACACTCCTGCTAGT+AGG | - | chr8.1:77458276-77458295 | MS.gene25042:intron | 50.0% | |
| GTGCCATAGTTGTGTGCCAT+TGG | + | chr8.1:77458883-77458902 | None:intergenic | 50.0% | |
| GTGTGATGTGTGTGTGTGTG+TGG | - | chr8.1:77458837-77458856 | MS.gene25042:intron | 50.0% | |
| TGATGTGTGTGTGTGTGTGG+TGG | - | chr8.1:77458840-77458859 | MS.gene25042:intron | 50.0% | |
| TGCTAGTAGGTCAGGACCAT+TGG | - | chr8.1:77458289-77458308 | MS.gene25042:intron | 50.0% | |
| TTGGAGCTCAAGTGAAGAGG+AGG | - | chr8.1:77458424-77458443 | MS.gene25042:intron | 50.0% | |
| ! | GATGTGTGTTGATGGGTGTG+GGG | - | chr8.1:77458808-77458827 | MS.gene25042:intron | 50.0% |
| ! | TGACATTGCTTGGGTGCCAT+TGG | - | chr8.1:77458760-77458779 | MS.gene25042:intron | 50.0% |
| !! | ACAAAACCGGCTTGCATGGT+GGG | + | chr8.1:77457675-77457694 | None:intergenic | 50.0% |
| !! | CCATGCAAGCCGGTTTTGTA+AGG | - | chr8.1:77457676-77457695 | MS.gene25042:CDS | 50.0% |
| !! | CCTTACAAAACCGGCTTGCA+TGG | + | chr8.1:77457679-77457698 | None:intergenic | 50.0% |
| !! | TACAAAACCGGCTTGCATGG+TGG | + | chr8.1:77457676-77457695 | None:intergenic | 50.0% |
| !! | TTGTGTGCCATTGGTGCCAT+TGG | + | chr8.1:77458874-77458893 | None:intergenic | 50.0% |
| GATGGCACCAATGGCACCAA+TGG | - | chr8.1:77458864-77458883 | MS.gene25042:intron | 55.0% | |
| GTTGAACCTCGACCTGATGC+AGG | - | chr8.1:77458691-77458710 | MS.gene25042:intron | 55.0% | |
| ! | GTGTGTGTGTGTGGTGGAGA+TGG | - | chr8.1:77458846-77458865 | MS.gene25042:intron | 55.0% |
| ! | TGTGGTGGAGATGGCACCAA+TGG | - | chr8.1:77458855-77458874 | MS.gene25042:intron | 55.0% |
| GTGGGTGAGGGTAGAGGTTG+AGG | + | chr8.1:77459304-77459323 | None:intergenic | 60.0% | |
| TAGAGGGTGGGTGAGGGTAG+AGG | + | chr8.1:77459310-77459329 | None:intergenic | 60.0% | |
| GGCACTCCCACCATGCAAGC+CGG | - | chr8.1:77457666-77457685 | MS.gene25042:CDS | 65.0% | |
| !! | GCAGGAGTGTTATGGCGCGC+AGG | + | chr8.1:77458272-77458291 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 77456620 | 77459538 | 77456620 | ID=MS.gene25042 |
| chr8.1 | mRNA | 77456620 | 77459538 | 77456620 | ID=MS.gene25042.t1;Parent=MS.gene25042 |
| chr8.1 | exon | 77458950 | 77459538 | 77458950 | ID=MS.gene25042.t1.exon1;Parent=MS.gene25042.t1 |
| chr8.1 | CDS | 77458950 | 77459538 | 77458950 | ID=cds.MS.gene25042.t1;Parent=MS.gene25042.t1 |
| chr8.1 | exon | 77457606 | 77458107 | 77457606 | ID=MS.gene25042.t1.exon2;Parent=MS.gene25042.t1 |
| chr8.1 | CDS | 77457606 | 77458107 | 77457606 | ID=cds.MS.gene25042.t1;Parent=MS.gene25042.t1 |
| chr8.1 | exon | 77457053 | 77457134 | 77457053 | ID=MS.gene25042.t1.exon3;Parent=MS.gene25042.t1 |
| chr8.1 | CDS | 77457053 | 77457134 | 77457053 | ID=cds.MS.gene25042.t1;Parent=MS.gene25042.t1 |
| chr8.1 | exon | 77456620 | 77456670 | 77456620 | ID=MS.gene25042.t1.exon4;Parent=MS.gene25042.t1 |
| chr8.1 | CDS | 77456620 | 77456670 | 77456620 | ID=cds.MS.gene25042.t1;Parent=MS.gene25042.t1 |
| Gene Sequence |
| Protein sequence |
