Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25351.t1 | RZC04659.1 | 64.3 | 459 | 131 | 2 | 91 | 516 | 423 | 881 | 1.70E-169 | 605.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25351.t1 | P08770 | 32.3 | 470 | 260 | 7 | 91 | 516 | 332 | 787 | 5.3e-66 | 253.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25351.t1 | A0A445K1Q5 | 64.3 | 459 | 131 | 2 | 91 | 516 | 423 | 881 | 1.3e-169 | 605.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene25351 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene25351 | 0.807516 | 4.87E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene25351 | 0.811494 | 6.81E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene25351 | 0.8034 | 3.55E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene25351 | 0.814927 | 1.20E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene25351 | 0.818606 | 1.80E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene25351 | 0.808058 | 3.73E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTTCACTCTTCAAAA+TGG | 0.170935 | 8.2:-39036875 | None:intergenic |
| TTTCACGAAGCTTAAGTTAA+TGG | 0.182150 | 8.2:+39034701 | MS.gene25351:CDS |
| CATTTCTTTAATCAAATTAT+TGG | 0.241200 | 8.2:-39035975 | None:intergenic |
| AACGGAGTTGGATCATTATC+TGG | 0.259746 | 8.2:+39036315 | MS.gene25351:CDS |
| CCATTATTGCAAGAACTTCT+TGG | 0.264073 | 8.2:+39034742 | MS.gene25351:CDS |
| TGCAGAAATTTGATAAATAT+TGG | 0.280085 | 8.2:+39036011 | MS.gene25351:CDS |
| CCACATCAGAATATCAAAAT+TGG | 0.289304 | 8.2:-39036362 | None:intergenic |
| CGAGATTTGTAAGATCAAAT+TGG | 0.290931 | 8.2:+39035928 | MS.gene25351:CDS |
| CCAAGAAGTTCTTGCAATAA+TGG | 0.298116 | 8.2:-39034742 | None:intergenic |
| TTTGGATCCAAGATACAAAA+TGG | 0.298966 | 8.2:+39036069 | MS.gene25351:CDS |
| TATTTAAATGTTTACTTGAA+TGG | 0.313417 | 8.2:+39035378 | MS.gene25351:CDS |
| GATGGGAGTTGCTACTGTTT+TGG | 0.320873 | 8.2:+39036051 | MS.gene25351:CDS |
| TCAGAAGCTACTGAAGTAAT+AGG | 0.323940 | 8.2:-39036448 | None:intergenic |
| ACTGGACTGCAACTCCTAAA+AGG | 0.326823 | 8.2:+39035618 | MS.gene25351:CDS |
| CAATAATTTGATTAAAGAAA+TGG | 0.336226 | 8.2:+39035976 | MS.gene25351:CDS |
| TTCGAGATAGTGTAGCTTAC+TGG | 0.339966 | 8.2:+39035600 | MS.gene25351:CDS |
| ATATCAAAATTGGCACTTCT+AGG | 0.340733 | 8.2:-39036352 | None:intergenic |
| TGCTATGATTGACAAAATTA+AGG | 0.352231 | 8.2:+39035454 | MS.gene25351:CDS |
| GTTTAGACTGTCCAACTAGA+TGG | 0.363378 | 8.2:+39035699 | MS.gene25351:CDS |
| CAATTTGATCTTACAAATCT+CGG | 0.381654 | 8.2:-39035927 | None:intergenic |
| TTTGCAATTTCTTGCAATGT+TGG | 0.382104 | 8.2:-39036409 | None:intergenic |
| TTATCATCTGTGATATCAAT+AGG | 0.408739 | 8.2:-39034621 | None:intergenic |
| GGTGCTTCTAGTATTTCATT+TGG | 0.412807 | 8.2:-39034600 | None:intergenic |
| AAGATCTTACATTCATCATC+AGG | 0.417940 | 8.2:-39036746 | None:intergenic |
| AGTATCACTGAACTCATATC+TGG | 0.426833 | 8.2:+39035872 | MS.gene25351:intron |
| ACAGAGGCATTGGCAGAAAC+AGG | 0.429765 | 8.2:+39034645 | MS.gene25351:CDS |
| TCAGCTTCACTCTTCAAAAT+GGG | 0.432393 | 8.2:-39036874 | None:intergenic |
| TACGTGGAGTTCCATCTAGT+TGG | 0.446126 | 8.2:-39035710 | None:intergenic |
| GAGTGAGACCAGTAGTAGTT+TGG | 0.451269 | 8.2:-39034557 | None:intergenic |
| CCATCCCTCAACAAAGTACT+TGG | 0.453316 | 8.2:-39035488 | None:intergenic |
| TAGCAACTCCCATCATATCC+TGG | 0.454437 | 8.2:-39036042 | None:intergenic |
| GCTTCTAGTATTTCATTTGG+TGG | 0.459250 | 8.2:-39034597 | None:intergenic |
| GCTAATTCTGTGGCTAATGA+TGG | 0.459373 | 8.2:+39036232 | MS.gene25351:CDS |
| TAACAGCAGGCGTCGGAGTA+AGG | 0.460436 | 8.2:+39034668 | MS.gene25351:CDS |
| TATATTAAATTTGATAGTAA+AGG | 0.462368 | 8.2:+39035541 | MS.gene25351:CDS |
| GGATAATGTTGGTAATTCTC+AGG | 0.471672 | 8.2:+39034506 | MS.gene25351:CDS |
| TCAAATTGGCAATATCTGAT+TGG | 0.473321 | 8.2:+39035942 | MS.gene25351:CDS |
| TAAAAGGAAGGAAAGATTTG+AGG | 0.473646 | 8.2:+39035634 | MS.gene25351:CDS |
| ACTCTGTTGAGCAAGTTAAG+AGG | 0.474739 | 8.2:+39036131 | MS.gene25351:CDS |
| GAGTGTCACCCAGGATATGA+TGG | 0.476745 | 8.2:+39036033 | MS.gene25351:CDS |
| CTCATCGTAGTCGACTTCAT+TGG | 0.485204 | 8.2:+39036506 | MS.gene25351:CDS |
| AATTTGATCTTACAAATCTC+GGG | 0.487617 | 8.2:-39035926 | None:intergenic |
| ATATGGAGCAAGGAGAATAA+TGG | 0.491041 | 8.2:+39036565 | MS.gene25351:CDS |
| GCAGGCGTCGGAGTAAGGTA+TGG | 0.491355 | 8.2:+39034673 | MS.gene25351:CDS |
| TTAAGTTAATGGAGAAGATA+AGG | 0.493123 | 8.2:+39034712 | MS.gene25351:CDS |
| TGGTTTAGAAGTAGTGAAGG+AGG | 0.493562 | 8.2:+39035565 | MS.gene25351:CDS |
| GTTTAGAAGTAGTGAAGGAG+GGG | 0.493841 | 8.2:+39035567 | MS.gene25351:CDS |
| TAGAACATCATTATATAAAA+CGG | 0.495038 | 8.2:+39036297 | MS.gene25351:CDS |
| ATCATTATATAAAACGGAGT+TGG | 0.499119 | 8.2:+39036303 | MS.gene25351:CDS |
| TGAGCCAAGTACTTTGTTGA+GGG | 0.500136 | 8.2:+39035484 | MS.gene25351:CDS |
| TTCTTTAATCAAATTATTGG+AGG | 0.501683 | 8.2:-39035972 | None:intergenic |
| TAAAGAAATGGCTAAGAAGA+TGG | 0.502305 | 8.2:+39035988 | MS.gene25351:CDS |
| CTATCACTTGAATGAGGAGC+AGG | 0.508504 | 8.2:-39035341 | None:intergenic |
| CTTTGATGTGTGCTAGAAGT+TGG | 0.508597 | 8.2:+39036542 | MS.gene25351:CDS |
| GGATGGTTTAGAAGTAGTGA+AGG | 0.519064 | 8.2:+39035562 | MS.gene25351:CDS |
| TCTAGTATTTCATTTGGTGG+TGG | 0.521386 | 8.2:-39034594 | None:intergenic |
| CCAAGTACTTTGTTGAGGGA+TGG | 0.521479 | 8.2:+39035488 | MS.gene25351:CDS |
| ACTTCATTGGACAACCTTGG+AGG | 0.521822 | 8.2:+39036519 | MS.gene25351:CDS |
| TTAAATTTGATAGTAAAGGA+TGG | 0.523395 | 8.2:+39035545 | MS.gene25351:CDS |
| AGTGCACACCAAACTACTAC+TGG | 0.530092 | 8.2:+39034549 | MS.gene25351:CDS |
| GAATCAGCATTCAGTACAAG+TGG | 0.537506 | 8.2:+39036469 | MS.gene25351:CDS |
| AGATGATAATACAGAGGCAT+TGG | 0.538621 | 8.2:+39034635 | MS.gene25351:CDS |
| TCGACTTCATTGGACAACCT+TGG | 0.544964 | 8.2:+39036516 | MS.gene25351:CDS |
| AGCAACTCCCATCATATCCT+GGG | 0.551068 | 8.2:-39036041 | None:intergenic |
| TAGTGAAGGAGGGGATTGAG+CGG | 0.551350 | 8.2:+39035576 | MS.gene25351:CDS |
| TTGAGCCAAGTACTTTGTTG+AGG | 0.552495 | 8.2:+39035483 | MS.gene25351:CDS |
| GGTTTAGAAGTAGTGAAGGA+GGG | 0.559256 | 8.2:+39035566 | MS.gene25351:CDS |
| TGTGTGCTAGAAGTTGGATA+TGG | 0.560174 | 8.2:+39036548 | MS.gene25351:CDS |
| TGGTGGTGGTTGAGATGATG+AGG | 0.562079 | 8.2:-39034580 | None:intergenic |
| TAAATATTGGAGTGTCACCC+AGG | 0.565226 | 8.2:+39036024 | MS.gene25351:CDS |
| TGGCAGAAACAGGTAACAGC+AGG | 0.569494 | 8.2:+39034655 | MS.gene25351:CDS |
| ACGGAGTTGGATCATTATCT+GGG | 0.571432 | 8.2:+39036316 | MS.gene25351:CDS |
| CTGATGTGGTGGAAGTTGAA+TGG | 0.578791 | 8.2:+39036376 | MS.gene25351:CDS |
| CAGGCGTCGGAGTAAGGTAT+GGG | 0.580766 | 8.2:+39034674 | MS.gene25351:CDS |
| AGAATTACCAACATTATCCA+TGG | 0.583333 | 8.2:-39034502 | None:intergenic |
| AAATGGACCATGGATAATGT+TGG | 0.583610 | 8.2:+39034495 | MS.gene25351:CDS |
| ATTATGATGCATATGTCAAG+AGG | 0.590157 | 8.2:+39036263 | MS.gene25351:CDS |
| AAGTTCAATCAAGACACTTG+TGG | 0.595420 | 8.2:+39036196 | MS.gene25351:CDS |
| GACTGCAACTCCTAAAAGGA+AGG | 0.598534 | 8.2:+39035622 | MS.gene25351:CDS |
| CAAAGTCTATCACTTGAATG+AGG | 0.607514 | 8.2:-39035347 | None:intergenic |
| AGACACTTGTGGTGAATCGT+CGG | 0.609844 | 8.2:+39036207 | MS.gene25351:CDS |
| GGTGGTGGTTGAGATGATGA+GGG | 0.613545 | 8.2:-39034579 | None:intergenic |
| AGTGTCACCCAGGATATGAT+GGG | 0.628166 | 8.2:+39036034 | MS.gene25351:CDS |
| AGCACACATCAAAGCCTCCA+AGG | 0.630649 | 8.2:-39036533 | None:intergenic |
| TAGAAGTTGGATATGGAGCA+AGG | 0.637735 | 8.2:+39036555 | MS.gene25351:CDS |
| ATAGGTGAAATATTGACTAG+TGG | 0.646439 | 8.2:+39036843 | MS.gene25351:intron |
| AAACAGGTAACAGCAGGCGT+CGG | 0.649330 | 8.2:+39034661 | MS.gene25351:CDS |
| CCTCGTACAAAATAGCTATG+TGG | 0.651628 | 8.2:-39035742 | None:intergenic |
| ACTCAACAGGAAATGGACCA+TGG | 0.666596 | 8.2:+39034485 | None:intergenic |
| ATCGTCGGAAGCTAATTCTG+TGG | 0.696219 | 8.2:+39036222 | MS.gene25351:CDS |
| CAATGAAGTCGACTACGATG+AGG | 0.702001 | 8.2:-39036505 | None:intergenic |
| TATCACAGATGATAATACAG+AGG | 0.709484 | 8.2:+39034629 | MS.gene25351:CDS |
| TATGTGGAGCATCTTATACG+TGG | 0.757438 | 8.2:-39035726 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTGTATTTTTTATTATAT+AGG | + | chr8.2:39036825-39036844 | MS.gene25351:intron | 10.0% |
| !!! | TATATTAAATTTGATAGTAA+AGG | + | chr8.2:39035541-39035560 | MS.gene25351:CDS | 10.0% |
| !! | AAACATTAAAGTTAGTAAAT+TGG | - | chr8.2:39036797-39036816 | None:intergenic | 15.0% |
| !! | CAATAATTTGATTAAAGAAA+TGG | + | chr8.2:39035976-39035995 | MS.gene25351:CDS | 15.0% |
| !! | CATTTCTTTAATCAAATTAT+TGG | - | chr8.2:39035978-39035997 | None:intergenic | 15.0% |
| !! | TAGAACATCATTATATAAAA+CGG | + | chr8.2:39036297-39036316 | MS.gene25351:CDS | 15.0% |
| !! | TATTTAAATGTTTACTTGAA+TGG | + | chr8.2:39035378-39035397 | MS.gene25351:CDS | 15.0% |
| !!! | TACTATTTTGAAAAATTGTA+TGG | + | chr8.2:39036103-39036122 | MS.gene25351:CDS | 15.0% |
| !!! | TTTTAATATATCCTTTTTGA+TGG | - | chr8.2:39035052-39035071 | None:intergenic | 15.0% |
| !! | ATTAAAGTTAGTAAATTGGA+AGG | - | chr8.2:39036793-39036812 | None:intergenic | 20.0% |
| !! | CTTTCAATTTACATATCTTA+AGG | + | chr8.2:39036605-39036624 | MS.gene25351:intron | 20.0% |
| !! | TATGAATGTTATTACTTGTT+AGG | + | chr8.2:39035306-39035325 | MS.gene25351:intron | 20.0% |
| !! | TGCAGAAATTTGATAAATAT+TGG | + | chr8.2:39036011-39036030 | MS.gene25351:CDS | 20.0% |
| !! | TTCTTTAATCAAATTATTGG+AGG | - | chr8.2:39035975-39035994 | None:intergenic | 20.0% |
| !!! | TTAAATTTGATAGTAAAGGA+TGG | + | chr8.2:39035545-39035564 | MS.gene25351:CDS | 20.0% |
| ! | AAAACACTTTCTTCATCATA+TGG | + | chr8.2:39034786-39034805 | MS.gene25351:intron | 25.0% |
| ! | AAAAGATGTTTGTGAAAGAT+TGG | + | chr8.2:39035838-39035857 | MS.gene25351:intron | 25.0% |
| ! | AAAATAAACATGATCAACGA+TGG | - | chr8.2:39034977-39034996 | None:intergenic | 25.0% |
| ! | AATTTGATCTTACAAATCTC+GGG | - | chr8.2:39035929-39035948 | None:intergenic | 25.0% |
| ! | ATCATTATATAAAACGGAGT+TGG | + | chr8.2:39036303-39036322 | MS.gene25351:CDS | 25.0% |
| ! | CAATTTGATCTTACAAATCT+CGG | - | chr8.2:39035930-39035949 | None:intergenic | 25.0% |
| ! | CTTATAATCCTGAAAATTCA+AGG | + | chr8.2:39034908-39034927 | MS.gene25351:intron | 25.0% |
| ! | GGAAGGTAGTATTAAATAAA+TGG | - | chr8.2:39036776-39036795 | None:intergenic | 25.0% |
| ! | TAGTAGAAATACCATCAAAA+AGG | + | chr8.2:39035038-39035057 | MS.gene25351:intron | 25.0% |
| ! | TGCTATGATTGACAAAATTA+AGG | + | chr8.2:39035454-39035473 | MS.gene25351:CDS | 25.0% |
| ! | TTAAGTTAATGGAGAAGATA+AGG | + | chr8.2:39034712-39034731 | MS.gene25351:CDS | 25.0% |
| ! | TTATCATCTGTGATATCAAT+AGG | - | chr8.2:39034624-39034643 | None:intergenic | 25.0% |
| !! | TAATCAAAAAAAGGGGTATA+TGG | + | chr8.2:39035161-39035180 | MS.gene25351:intron | 25.0% |
| !!! | TCGTTGATCATGTTTATTTT+AGG | + | chr8.2:39034977-39034996 | MS.gene25351:intron | 25.0% |
| !!! | TTTTTGATGGTATTTCTACT+AGG | - | chr8.2:39035039-39035058 | None:intergenic | 25.0% |
| AAGATCTTACATTCATCATC+AGG | - | chr8.2:39036749-39036768 | None:intergenic | 30.0% | |
| AATCTCGGGAAAAAACATAT+TGG | - | chr8.2:39035915-39035934 | None:intergenic | 30.0% | |
| ACCTCAGGTAATCAAAAAAA+GGG | + | chr8.2:39035153-39035172 | MS.gene25351:intron | 30.0% | |
| ACTGCATTTGCATTATTTAC+AGG | + | chr8.2:39036668-39036687 | MS.gene25351:intron | 30.0% | |
| AGAATTACCAACATTATCCA+TGG | - | chr8.2:39034505-39034524 | None:intergenic | 30.0% | |
| ATATCAAAATTGGCACTTCT+AGG | - | chr8.2:39036355-39036374 | None:intergenic | 30.0% | |
| ATGAGAACAAGACAACTAAA+GGG | + | chr8.2:39034833-39034852 | MS.gene25351:intron | 30.0% | |
| ATTATGATGCATATGTCAAG+AGG | + | chr8.2:39036263-39036282 | MS.gene25351:CDS | 30.0% | |
| CCACATCAGAATATCAAAAT+TGG | - | chr8.2:39036365-39036384 | None:intergenic | 30.0% | |
| CGAGATTTGTAAGATCAAAT+TGG | + | chr8.2:39035928-39035947 | MS.gene25351:CDS | 30.0% | |
| GTTACTGCACATTATATTGA+TGG | + | chr8.2:39035186-39035205 | MS.gene25351:intron | 30.0% | |
| TAAAAGGAAGGAAAGATTTG+AGG | + | chr8.2:39035634-39035653 | MS.gene25351:CDS | 30.0% | |
| TAAAGAAATGGCTAAGAAGA+TGG | + | chr8.2:39035988-39036007 | MS.gene25351:CDS | 30.0% | |
| TATCACAGATGATAATACAG+AGG | + | chr8.2:39034629-39034648 | MS.gene25351:CDS | 30.0% | |
| TCAAATTGGCAATATCTGAT+TGG | + | chr8.2:39035942-39035961 | MS.gene25351:CDS | 30.0% | |
| TTCCTAATTCTTTCTTTCCT+TGG | - | chr8.2:39034882-39034901 | None:intergenic | 30.0% | |
| TTTCACGAAGCTTAAGTTAA+TGG | + | chr8.2:39034701-39034720 | MS.gene25351:CDS | 30.0% | |
| TTTGCAATTTCTTGCAATGT+TGG | - | chr8.2:39036412-39036431 | None:intergenic | 30.0% | |
| TTTGGATCCAAGATACAAAA+TGG | + | chr8.2:39036069-39036088 | MS.gene25351:CDS | 30.0% | |
| ! | AGGATGTATTTTCTAGATTG+AGG | + | chr8.2:39035762-39035781 | MS.gene25351:CDS | 30.0% |
| ! | AGTTCTTTCCTTGAATTTTC+AGG | - | chr8.2:39034919-39034938 | None:intergenic | 30.0% |
| ! | ATAGGTGAAATATTGACTAG+TGG | + | chr8.2:39036843-39036862 | MS.gene25351:intron | 30.0% |
| ! | CACATTATATTGATGGATCT+TGG | + | chr8.2:39035193-39035212 | MS.gene25351:intron | 30.0% |
| ! | GTTTGATAGTCTTCAATCAA+GGG | + | chr8.2:39035107-39035126 | MS.gene25351:intron | 30.0% |
| ! | TAAAAGTGTATGAGTTTGAG+CGG | + | chr8.2:39035067-39035086 | MS.gene25351:intron | 30.0% |
| ! | TCAAATCTTTCCTTCCTTTT+AGG | - | chr8.2:39035635-39035654 | None:intergenic | 30.0% |
| ! | TGTTTGATAGTCTTCAATCA+AGG | + | chr8.2:39035106-39035125 | MS.gene25351:intron | 30.0% |
| !! | ATTTTGATATTCTGATGTGG+TGG | + | chr8.2:39036365-39036384 | MS.gene25351:CDS | 30.0% |
| !! | CCAATTTTGATATTCTGATG+TGG | + | chr8.2:39036362-39036381 | MS.gene25351:CDS | 30.0% |
| AAATGGACCATGGATAATGT+TGG | + | chr8.2:39034495-39034514 | MS.gene25351:CDS | 35.0% | |
| AACTTGAAACAATGGTTGCA+GGG | - | chr8.2:39035016-39035035 | None:intergenic | 35.0% | |
| AAGTTCAATCAAGACACTTG+TGG | + | chr8.2:39036196-39036215 | MS.gene25351:CDS | 35.0% | |
| AGTATCACTGAACTCATATC+TGG | + | chr8.2:39035872-39035891 | MS.gene25351:intron | 35.0% | |
| ATATGGAGCAAGGAGAATAA+TGG | + | chr8.2:39036565-39036584 | MS.gene25351:CDS | 35.0% | |
| CAAAGTCTATCACTTGAATG+AGG | - | chr8.2:39035350-39035369 | None:intergenic | 35.0% | |
| CATGAGAACAAGACAACTAA+AGG | + | chr8.2:39034832-39034851 | MS.gene25351:intron | 35.0% | |
| CCAAGAAGTTCTTGCAATAA+TGG | - | chr8.2:39034745-39034764 | None:intergenic | 35.0% | |
| CCATTATTGCAAGAACTTCT+TGG | + | chr8.2:39034742-39034761 | MS.gene25351:CDS | 35.0% | |
| CCTCAGGTAATCAAAAAAAG+GGG | + | chr8.2:39035154-39035173 | MS.gene25351:intron | 35.0% | |
| CTACTAGGAACTTGAAACAA+TGG | - | chr8.2:39035024-39035043 | None:intergenic | 35.0% | |
| CTTGGTGGAAAATCAACTAA+TGG | + | chr8.2:39034760-39034779 | MS.gene25351:intron | 35.0% | |
| GACCTCAGGTAATCAAAAAA+AGG | + | chr8.2:39035152-39035171 | MS.gene25351:intron | 35.0% | |
| GCTTCTAGTATTTCATTTGG+TGG | - | chr8.2:39034600-39034619 | None:intergenic | 35.0% | |
| GGAAAAAACATATTGGCAGT+AGG | - | chr8.2:39035908-39035927 | None:intergenic | 35.0% | |
| GGTGCTTCTAGTATTTCATT+TGG | - | chr8.2:39034603-39034622 | None:intergenic | 35.0% | |
| TCAGAAGCTACTGAAGTAAT+AGG | - | chr8.2:39036451-39036470 | None:intergenic | 35.0% | |
| TTATTGCAAGAACTTCTTGG+TGG | + | chr8.2:39034745-39034764 | MS.gene25351:intron | 35.0% | |
| TTCATGCGTAATTATTGCAG+AGG | - | chr8.2:39034944-39034963 | None:intergenic | 35.0% | |
| ! | AACTTCCATTGTTGACTAGT+TGG | - | chr8.2:39035815-39035834 | None:intergenic | 35.0% |
| ! | AGATGATAATACAGAGGCAT+TGG | + | chr8.2:39034635-39034654 | MS.gene25351:CDS | 35.0% |
| ! | AGCAACTCCATTTTGTATCT+TGG | - | chr8.2:39036079-39036098 | None:intergenic | 35.0% |
| ! | TCTAGTATTTCATTTGGTGG+TGG | - | chr8.2:39034597-39034616 | None:intergenic | 35.0% |
| !! | GGATAATGTTGGTAATTCTC+AGG | + | chr8.2:39034506-39034525 | MS.gene25351:CDS | 35.0% |
| AACGGAGTTGGATCATTATC+TGG | + | chr8.2:39036315-39036334 | MS.gene25351:CDS | 40.0% | |
| ACATGATCAACGATGGAAAG+TGG | - | chr8.2:39034970-39034989 | None:intergenic | 40.0% | |
| ACGGAGTTGGATCATTATCT+GGG | + | chr8.2:39036316-39036335 | MS.gene25351:CDS | 40.0% | |
| ACTCTGTTGAGCAAGTTAAG+AGG | + | chr8.2:39036131-39036150 | MS.gene25351:CDS | 40.0% | |
| ATTTACAGAGTCGCATCTTG+AGG | + | chr8.2:39035217-39035236 | MS.gene25351:intron | 40.0% | |
| CAAACACTTCTTGTGCCAAA+GGG | + | chr8.2:39034856-39034875 | MS.gene25351:intron | 40.0% | |
| CCTCGTACAAAATAGCTATG+TGG | - | chr8.2:39035745-39035764 | None:intergenic | 40.0% | |
| CTTTGATGTGTGCTAGAAGT+TGG | + | chr8.2:39036542-39036561 | MS.gene25351:CDS | 40.0% | |
| GAACTTGAAACAATGGTTGC+AGG | - | chr8.2:39035017-39035036 | None:intergenic | 40.0% | |
| GAATCAGCATTCAGTACAAG+TGG | + | chr8.2:39036469-39036488 | MS.gene25351:CDS | 40.0% | |
| GCTAATTCTGTGGCTAATGA+TGG | + | chr8.2:39036232-39036251 | MS.gene25351:CDS | 40.0% | |
| GGATGGTTTAGAAGTAGTGA+AGG | + | chr8.2:39035562-39035581 | MS.gene25351:CDS | 40.0% | |
| GGCCAAGGAAAGAAAGAATT+AGG | + | chr8.2:39034877-39034896 | MS.gene25351:intron | 40.0% | |
| GGTTTAGAAGTAGTGAAGGA+GGG | + | chr8.2:39035566-39035585 | MS.gene25351:CDS | 40.0% | |
| GTTTAGAAGTAGTGAAGGAG+GGG | + | chr8.2:39035567-39035586 | MS.gene25351:CDS | 40.0% | |
| GTTTAGACTGTCCAACTAGA+TGG | + | chr8.2:39035699-39035718 | MS.gene25351:CDS | 40.0% | |
| TAGAAGTTGGATATGGAGCA+AGG | + | chr8.2:39036555-39036574 | MS.gene25351:CDS | 40.0% | |
| TGAGCCAAGTACTTTGTTGA+GGG | + | chr8.2:39035484-39035503 | MS.gene25351:CDS | 40.0% | |
| TGATAGTCTTCAATCAAGGG+TGG | + | chr8.2:39035110-39035129 | MS.gene25351:intron | 40.0% | |
| TGGTTTAGAAGTAGTGAAGG+AGG | + | chr8.2:39035565-39035584 | MS.gene25351:CDS | 40.0% | |
| TGTGTGCTAGAAGTTGGATA+TGG | + | chr8.2:39036548-39036567 | MS.gene25351:CDS | 40.0% | |
| TTCGAGATAGTGTAGCTTAC+TGG | + | chr8.2:39035600-39035619 | MS.gene25351:CDS | 40.0% | |
| TTGAGCCAAGTACTTTGTTG+AGG | + | chr8.2:39035483-39035502 | MS.gene25351:CDS | 40.0% | |
| ! | TAAATATTGGAGTGTCACCC+AGG | + | chr8.2:39036024-39036043 | MS.gene25351:CDS | 40.0% |
| ! | TATGTGGAGCATCTTATACG+TGG | - | chr8.2:39035729-39035748 | None:intergenic | 40.0% |
| !! | CCACATAGCTATTTTGTACG+AGG | + | chr8.2:39035742-39035761 | MS.gene25351:CDS | 40.0% |
| !!! | CCCCTTTTTTTGATTACCTG+AGG | - | chr8.2:39035157-39035176 | None:intergenic | 40.0% |
| ACTGGACTGCAACTCCTAAA+AGG | + | chr8.2:39035618-39035637 | MS.gene25351:CDS | 45.0% | |
| ACTTCATTGGACAACCTTGG+AGG | + | chr8.2:39036519-39036538 | MS.gene25351:CDS | 45.0% | |
| AGACACTTGTGGTGAATCGT+CGG | + | chr8.2:39036207-39036226 | MS.gene25351:CDS | 45.0% | |
| AGCAACTCCCATCATATCCT+GGG | - | chr8.2:39036044-39036063 | None:intergenic | 45.0% | |
| AGTGCACACCAAACTACTAC+TGG | + | chr8.2:39034549-39034568 | MS.gene25351:CDS | 45.0% | |
| AGTGTCACCCAGGATATGAT+GGG | + | chr8.2:39036034-39036053 | MS.gene25351:CDS | 45.0% | |
| ATCGTCGGAAGCTAATTCTG+TGG | + | chr8.2:39036222-39036241 | MS.gene25351:CDS | 45.0% | |
| CAATGAAGTCGACTACGATG+AGG | - | chr8.2:39036508-39036527 | None:intergenic | 45.0% | |
| CCAAGTACTTTGTTGAGGGA+TGG | + | chr8.2:39035488-39035507 | MS.gene25351:CDS | 45.0% | |
| CTATCACTTGAATGAGGAGC+AGG | - | chr8.2:39035344-39035363 | None:intergenic | 45.0% | |
| GACTGCAACTCCTAAAAGGA+AGG | + | chr8.2:39035622-39035641 | MS.gene25351:CDS | 45.0% | |
| GAGTGAGACCAGTAGTAGTT+TGG | - | chr8.2:39034560-39034579 | None:intergenic | 45.0% | |
| GCAAACACTTCTTGTGCCAA+AGG | + | chr8.2:39034855-39034874 | MS.gene25351:intron | 45.0% | |
| GGTCCACATGTCTGATGTAA+TGG | - | chr8.2:39035136-39035155 | None:intergenic | 45.0% | |
| GTGCTCCAACTAGTCAACAA+TGG | + | chr8.2:39035807-39035826 | MS.gene25351:intron | 45.0% | |
| TACGTGGAGTTCCATCTAGT+TGG | - | chr8.2:39035713-39035732 | None:intergenic | 45.0% | |
| TAGCAACTCCCATCATATCC+TGG | - | chr8.2:39036045-39036064 | None:intergenic | 45.0% | |
| TCGACTTCATTGGACAACCT+TGG | + | chr8.2:39036516-39036535 | MS.gene25351:CDS | 45.0% | |
| TCTTTCTTTCCTTGGCCCTT+TGG | - | chr8.2:39034874-39034893 | None:intergenic | 45.0% | |
| TGGCCATTACATCAGACATG+TGG | + | chr8.2:39035130-39035149 | MS.gene25351:intron | 45.0% | |
| ! | CCATCCCTCAACAAAGTACT+TGG | - | chr8.2:39035491-39035510 | None:intergenic | 45.0% |
| ! | CTCATCGTAGTCGACTTCAT+TGG | + | chr8.2:39036506-39036525 | MS.gene25351:CDS | 45.0% |
| ! | CTGATGTGGTGGAAGTTGAA+TGG | + | chr8.2:39036376-39036395 | MS.gene25351:CDS | 45.0% |
| ! | GATGGGAGTTGCTACTGTTT+TGG | + | chr8.2:39036051-39036070 | MS.gene25351:CDS | 45.0% |
| AAACAGGTAACAGCAGGCGT+CGG | + | chr8.2:39034661-39034680 | MS.gene25351:CDS | 50.0% | |
| ACATCAGACATGTGGACCTC+AGG | + | chr8.2:39035138-39035157 | MS.gene25351:intron | 50.0% | |
| AGCACACATCAAAGCCTCCA+AGG | - | chr8.2:39036536-39036555 | None:intergenic | 50.0% | |
| GAGTGTCACCCAGGATATGA+TGG | + | chr8.2:39036033-39036052 | MS.gene25351:CDS | 50.0% | |
| TAGTGAAGGAGGGGATTGAG+CGG | + | chr8.2:39035576-39035595 | MS.gene25351:CDS | 50.0% | |
| TGGCAGAAACAGGTAACAGC+AGG | + | chr8.2:39034655-39034674 | MS.gene25351:CDS | 50.0% | |
| ! | GGTGGTGGTTGAGATGATGA+GGG | - | chr8.2:39034582-39034601 | None:intergenic | 50.0% |
| !! | ACAGAGGCATTGGCAGAAAC+AGG | + | chr8.2:39034645-39034664 | MS.gene25351:CDS | 50.0% |
| !! | TGGTGGTGGTTGAGATGATG+AGG | - | chr8.2:39034583-39034602 | None:intergenic | 50.0% |
| CTTCTTGTGCCAAAGGGCCA+AGG | + | chr8.2:39034862-39034881 | MS.gene25351:intron | 55.0% | |
| !! | CAGGCGTCGGAGTAAGGTAT+GGG | + | chr8.2:39034674-39034693 | MS.gene25351:CDS | 55.0% |
| !! | TAACAGCAGGCGTCGGAGTA+AGG | + | chr8.2:39034668-39034687 | MS.gene25351:CDS | 55.0% |
| !! | GCAGGCGTCGGAGTAAGGTA+TGG | + | chr8.2:39034673-39034692 | MS.gene25351:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 39034494 | 39036890 | 39034494 | ID=MS.gene25351 |
| chr8.2 | mRNA | 39034494 | 39036890 | 39034494 | ID=MS.gene25351.t1;Parent=MS.gene25351 |
| chr8.2 | exon | 39034494 | 39034763 | 39034494 | ID=MS.gene25351.t1.exon1;Parent=MS.gene25351.t1 |
| chr8.2 | CDS | 39034494 | 39034763 | 39034494 | ID=cds.MS.gene25351.t1;Parent=MS.gene25351.t1 |
| chr8.2 | exon | 39035328 | 39035783 | 39035328 | ID=MS.gene25351.t1.exon2;Parent=MS.gene25351.t1 |
| chr8.2 | CDS | 39035328 | 39035783 | 39035328 | ID=cds.MS.gene25351.t1;Parent=MS.gene25351.t1 |
| chr8.2 | exon | 39035874 | 39036586 | 39035874 | ID=MS.gene25351.t1.exon3;Parent=MS.gene25351.t1 |
| chr8.2 | CDS | 39035874 | 39036586 | 39035874 | ID=cds.MS.gene25351.t1;Parent=MS.gene25351.t1 |
| chr8.2 | exon | 39036690 | 39036758 | 39036690 | ID=MS.gene25351.t1.exon4;Parent=MS.gene25351.t1 |
| chr8.2 | CDS | 39036690 | 39036758 | 39036690 | ID=cds.MS.gene25351.t1;Parent=MS.gene25351.t1 |
| chr8.2 | exon | 39036847 | 39036890 | 39036847 | ID=MS.gene25351.t1.exon5;Parent=MS.gene25351.t1 |
| chr8.2 | CDS | 39036847 | 39036890 | 39036847 | ID=cds.MS.gene25351.t1;Parent=MS.gene25351.t1 |
| Gene Sequence |
| Protein sequence |
