AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05690.t1 AT1G55830 48.485 297 147 4 42 337 73 364 9.25e-76 238
MS.gene05690.t1 AT1G55830 48.443 289 144 3 42 329 119 403 3.43e-75 238
MS.gene05690.t1 AT1G55830 46.965 313 158 5 18 329 179 484 2.80e-74 238

Find 72 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACTGTGCCTGCTATTC+AGG 0.092060 3.2:+51665631 None:intergenic
ATATTTGTTCGAAACCTTTA+TGG 0.153435 3.2:+51665802 None:intergenic
ATCTTGATGCCGTTATTATT+AGG 0.186559 3.2:-51665665 MS.gene05690:CDS
GCTGCACTTCTCTCAACTTT+TGG 0.190244 3.2:+51666814 None:intergenic
TGTATTGAATGTAAATAAAT+TGG 0.237564 3.2:-51667882 MS.gene05690:CDS
CTTTCTAATTTCATATGAAA+TGG 0.309251 3.2:+51666779 None:intergenic
ATGTCCGATGCAAGCGTTCA+TGG 0.318957 3.2:+51666076 None:intergenic
TTCAAACCTTCTTGCAGATC+TGG 0.319898 3.2:-51666238 MS.gene05690:CDS
GAGACACAGACACGTGAAAT+AGG 0.343232 3.2:-51667980 MS.gene05690:CDS
GGAACATCTTGAACAAGAAT+TGG 0.345075 3.2:-51667441 MS.gene05690:CDS
CAAGTATTTGTTCAGTCAAC+TGG 0.351601 3.2:+51667354 None:intergenic
TCTTGATGCCGTTATTATTA+GGG 0.352348 3.2:-51665664 MS.gene05690:CDS
TTGCTGACGAAATGGTCTTT+AGG 0.362563 3.2:-51666047 MS.gene05690:intron
CTTGCTCAAATCTAAGCTTC+TGG 0.373193 3.2:+51665698 None:intergenic
AGGAAATCACCTTTCGACTT+TGG 0.379570 3.2:-51667327 MS.gene05690:CDS
GATGCCGGAAGAAGTTCATT+TGG 0.380090 3.2:-51667845 MS.gene05690:CDS
AGAAACTAGGGAGGTTCAAT+TGG 0.391045 3.2:-51666112 MS.gene05690:CDS
GATGAAAGCTGCAGCTGAAA+TGG 0.391332 3.2:-51667414 MS.gene05690:CDS
GGAGTTGGATTCATCTTTGT+TGG 0.403739 3.2:+51667925 None:intergenic
TGGAGCATTACACGTGCATC+TGG 0.419750 3.2:+51666834 None:intergenic
ATCTGAATATGAAATGAAAC+TGG 0.425226 3.2:-51665739 MS.gene05690:CDS
ATGCCGGAAGAAGTTCATTT+GGG 0.425324 3.2:-51667844 MS.gene05690:CDS
CAAATCTAAGCTTCTGGAAG+TGG 0.434093 3.2:+51665704 None:intergenic
AATCCCAAATGAACTTCTTC+CGG 0.437521 3.2:+51667841 None:intergenic
TCAACTGTGCCTGCTATTCA+GGG 0.443246 3.2:+51665632 None:intergenic
CAATTCATCATTGACGGAGT+TGG 0.443992 3.2:+51667910 None:intergenic
TTTGACAGTTTCGCCACAAA+AGG 0.460774 3.2:-51667786 MS.gene05690:intron
ATATGCTGTTGCTGACGAAA+TGG 0.462043 3.2:-51666055 MS.gene05690:CDS
ACTATTCAATTCATCATTGA+CGG 0.462709 3.2:+51667904 None:intergenic
AGTGCTCTTTCTCTCTTCCA+AGG 0.463297 3.2:+51666884 None:intergenic
GTCAAATGTCCGTCATCAAT+AGG 0.465175 3.2:+51667803 None:intergenic
GTGCTCTTTCTCTCTTCCAA+GGG 0.467145 3.2:+51666885 None:intergenic
CTCCTGGTAAACATCCATAA+AGG 0.471718 3.2:-51665816 MS.gene05690:CDS
CTCCTCAATACGGTGAGTAT+AGG 0.473750 3.2:+51666185 None:intergenic
CAGTGACACTTCTATCAGTC+AGG 0.491602 3.2:-51667948 MS.gene05690:CDS
TTCATCTTCCCTAATAATAA+CGG 0.494196 3.2:+51665656 None:intergenic
AGCAGCAGAAAGTAGCATCT+AGG 0.502696 3.2:-51666212 MS.gene05690:CDS
AACCTTTATGGATGTTTACC+AGG 0.508128 3.2:+51665814 None:intergenic
AAAGTTGAGAGAAGTGCAGC+AGG 0.508410 3.2:-51666811 MS.gene05690:CDS
AAGATGAACCCCTGAATAGC+AGG 0.508972 3.2:-51665641 MS.gene05690:CDS
GAAAGATCCCACAGGACAGC+AGG 0.509791 3.2:-51665847 MS.gene05690:CDS
TTTCATATGAAATTAGAAAG+AGG 0.512433 3.2:-51666776 MS.gene05690:intron
ACTGAACAAATACTTGCTAA+AGG 0.520911 3.2:-51667347 MS.gene05690:CDS
AGAGGATCTTAAAAGAAACT+AGG 0.523004 3.2:-51666125 MS.gene05690:CDS
TTTGTTCAGTCAACTGGTCA+AGG 0.534400 3.2:+51667360 None:intergenic
AATGTAAATAAATTGGACAT+AGG 0.538340 3.2:-51667875 MS.gene05690:CDS
GAGGATCTTAAAAGAAACTA+GGG 0.541670 3.2:-51666124 MS.gene05690:CDS
AACTGTAAGAAGTTCAGAAG+TGG 0.542444 3.2:-51667462 MS.gene05690:CDS
TCTTTCTCTCACCAGGGAGG+AGG 0.542937 3.2:-51666265 MS.gene05690:intron
ATCCTATACTCACCGTATTG+AGG 0.544325 3.2:-51666187 MS.gene05690:CDS
TTTCGACTTTGGAGTCAGAA+TGG 0.550997 3.2:-51667316 MS.gene05690:intron
GGATGCTATAAGAAACCCCT+TGG 0.554934 3.2:-51666901 MS.gene05690:CDS
CTTATAAACCTGCTGTCCTG+TGG 0.557238 3.2:+51665839 None:intergenic
ACAGCAGGTTTATAAGCTCC+TGG 0.560649 3.2:-51665832 MS.gene05690:CDS
GACATAGGAGAGGTTGATGC+CGG 0.561670 3.2:-51667860 MS.gene05690:CDS
AAGTTCATTTGGGATTGAAG+AGG 0.565065 3.2:-51667834 MS.gene05690:CDS
TGCTCTTTCTCTCTTCCAAG+GGG 0.572018 3.2:+51666886 None:intergenic
AGAGAGAAAGAGCACTCTTG+AGG 0.573168 3.2:-51666877 MS.gene05690:CDS
TTATAAACCTGCTGTCCTGT+GGG 0.580986 3.2:+51665840 None:intergenic
CTATCCATGAACGCTTGCAT+CGG 0.591744 3.2:-51666080 MS.gene05690:CDS
GGTAGAAGTCAACAGACTGT+TGG 0.593339 3.2:+51667381 None:intergenic
TGTCCGTCATCAATAGGAGA+AGG 0.595695 3.2:+51667809 None:intergenic
GAAGCAAAGAAAGATCCCAC+AGG 0.618051 3.2:-51665855 MS.gene05690:CDS
AACAAGATGCTGATATTGAG+AGG 0.619407 3.2:-51666143 MS.gene05690:CDS
TCTAAGCTTCTGGAAGTGGA+AGG 0.631390 3.2:+51665708 None:intergenic
GATCCTTCTCCTATTGATGA+CGG 0.632024 3.2:-51667812 MS.gene05690:CDS
GCTTCTGGAAGTGGAAGGTG+TGG 0.641448 3.2:+51665713 None:intergenic
CAACTGTGCCTGCTATTCAG+GGG 0.641941 3.2:+51665633 None:intergenic
ACTGATAGAAGTGTCACTGC+TGG 0.646968 3.2:+51667952 None:intergenic
AAATAAATTGGACATAGGAG+AGG 0.651425 3.2:-51667870 MS.gene05690:CDS
ATTCTGACTCCAAAGTCGAA+AGG 0.670913 3.2:+51667318 None:intergenic
GATCTTAAAAGAAACTAGGG+AGG 0.677247 3.2:-51666121 MS.gene05690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTAAATTATTTACTTT+TGG + chr3.2:51667715-51667734 None:intergenic 10.0%
!! ATTACAAAGTAAAGATATAA+TGG + chr3.2:51667172-51667191 None:intergenic 15.0%
!! TGTATTGAATGTAAATAAAT+TGG - chr3.2:51665733-51665752 MS.gene05690:CDS 15.0%
!!! TTTCTTTTTTTTTTCTTTCA+TGG - chr3.2:51667676-51667695 MS.gene05690:intron 15.0%
!! AAAGTAAAATGAACTATACT+TGG + chr3.2:51666879-51666898 None:intergenic 20.0%
!! AATGTAAATAAATTGGACAT+AGG - chr3.2:51665740-51665759 MS.gene05690:CDS 20.0%
!! AATTTCTTCTTTATTGGAAA+GGG + chr3.2:51666536-51666555 None:intergenic 20.0%
!! CTTTCTAATTTCATATGAAA+TGG + chr3.2:51666839-51666858 None:intergenic 20.0%
!! TATGTCAATTTCTTCTTTAT+TGG + chr3.2:51666542-51666561 None:intergenic 20.0%
!! TTTCATATGAAATTAGAAAG+AGG - chr3.2:51666839-51666858 MS.gene05690:CDS 20.0%
!!! CATGTTTTACAATTTTGTTT+CGG - chr3.2:51666963-51666982 MS.gene05690:intron 20.0%
! AATGAACTATACTTGGAATT+TGG + chr3.2:51666872-51666891 None:intergenic 25.0%
! ACTATTCAATTCATCATTGA+CGG + chr3.2:51665714-51665733 None:intergenic 25.0%
! AGAGGCTTATAATGTATATT+CGG + chr3.2:51666907-51666926 None:intergenic 25.0%
! ATATTCGATGAATTTCAATG+TGG - chr3.2:51666686-51666705 MS.gene05690:intron 25.0%
! ATATTTGTTCGAAACCTTTA+TGG + chr3.2:51667816-51667835 None:intergenic 25.0%
! ATCTGAATATGAAATGAAAC+TGG - chr3.2:51667876-51667895 MS.gene05690:CDS 25.0%
! ATGTGCAAACTTGAAATATA+TGG - chr3.2:51666036-51666055 MS.gene05690:intron 25.0%
! CAATTTCTTCTTTATTGGAA+AGG + chr3.2:51666537-51666556 None:intergenic 25.0%
! TACTGATAGATATCAAATTC+AGG - chr3.2:51666108-51666127 MS.gene05690:CDS 25.0%
! TCATTTAAGCAATACTTGAT+GGG + chr3.2:51667039-51667058 None:intergenic 25.0%
! TCTATTATATTAGGTGAATC+CGG + chr3.2:51667210-51667229 None:intergenic 25.0%
! TTCATCTTCCCTAATAATAA+CGG + chr3.2:51667962-51667981 None:intergenic 25.0%
! TTCATTTAAGCAATACTTGA+TGG + chr3.2:51667040-51667059 None:intergenic 25.0%
! TTCTACACATTTCATATGTT+TGG + chr3.2:51665960-51665979 None:intergenic 25.0%
!! TCTTTTTAACACTCTCTTAT+TGG - chr3.2:51666368-51666387 MS.gene05690:intron 25.0%
!! TTTATGAAAGATACCTTTTG+TGG + chr3.2:51665845-51665864 None:intergenic 25.0%
!! TTTTTGTAATCTCCTCAATA+CGG + chr3.2:51667443-51667462 None:intergenic 25.0%
!!! TTACAATTTTGTTTCGGAAT+TGG - chr3.2:51666969-51666988 MS.gene05690:intron 25.0%
AAATAAATTGGACATAGGAG+AGG - chr3.2:51665745-51665764 MS.gene05690:CDS 30.0%
AGAGAGAATGTAAGTCAATA+AGG + chr3.2:51667333-51667352 None:intergenic 30.0%
AGAGGATCTTAAAAGAAACT+AGG - chr3.2:51667490-51667509 MS.gene05690:intron 30.0%
ATAAGCATAACTTCTTTGAC+TGG + chr3.2:51665901-51665920 None:intergenic 30.0%
ATCTTGATGCCGTTATTATT+AGG - chr3.2:51667950-51667969 MS.gene05690:CDS 30.0%
ATTTAAGCCAATAAGAGACT+AGG - chr3.2:51666456-51666475 MS.gene05690:intron 30.0%
CACACTTGGTCTATTATATT+AGG + chr3.2:51667219-51667238 None:intergenic 30.0%
GAGGATCTTAAAAGAAACTA+GGG - chr3.2:51667491-51667510 MS.gene05690:intron 30.0%
GAGGCTTATAATGTATATTC+GGG + chr3.2:51666906-51666925 None:intergenic 30.0%
GTGTTAAAAAGAGAGATTTG+TGG + chr3.2:51666360-51666379 None:intergenic 30.0%
TAAGCATAACTTCTTTGACT+GGG + chr3.2:51665900-51665919 None:intergenic 30.0%
TAATAGAATCACAACTACAC+CGG - chr3.2:51667188-51667207 MS.gene05690:intron 30.0%
TCTTGATGCCGTTATTATTA+GGG - chr3.2:51667951-51667970 MS.gene05690:CDS 30.0%
! ACTGAACAAATACTTGCTAA+AGG - chr3.2:51666268-51666287 MS.gene05690:intron 30.0%
!! AGTTGAAATTTTGACACACT+TGG + chr3.2:51667233-51667252 None:intergenic 30.0%
!! TCTCTTATTGGCTTAAATCA+AGG + chr3.2:51666454-51666473 None:intergenic 30.0%
AACAAGATGCTGATATTGAG+AGG - chr3.2:51667472-51667491 MS.gene05690:CDS 35.0%
AACCTTTATGGATGTTTACC+AGG + chr3.2:51667804-51667823 None:intergenic 35.0%
AACTGTAAGAAGTTCAGAAG+TGG - chr3.2:51666153-51666172 MS.gene05690:CDS 35.0%
AATCCCAAATGAACTTCTTC+CGG + chr3.2:51665777-51665796 None:intergenic 35.0%
ATAAGGCATATTCATCATCC+TGG + chr3.2:51667316-51667335 None:intergenic 35.0%
ATACTTGATGGGAATCAAGA+AGG + chr3.2:51667028-51667047 None:intergenic 35.0%
ATGAATTTCAATGTGGTGCA+GGG - chr3.2:51666693-51666712 MS.gene05690:intron 35.0%
ATTCTGTGCTTATGAAATGC+CGG + chr3.2:51666617-51666636 None:intergenic 35.0%
CAAGTATTTGTTCAGTCAAC+TGG + chr3.2:51666264-51666283 None:intergenic 35.0%
GATCTTAAAAGAAACTAGGG+AGG - chr3.2:51667494-51667513 MS.gene05690:intron 35.0%
GCAATATCTCTACAAACACA+TGG + chr3.2:51667646-51667665 None:intergenic 35.0%
GGAACATCTTGAACAAGAAT+TGG - chr3.2:51666174-51666193 MS.gene05690:CDS 35.0%
GTGCATTTGTAAGATGAAAC+CGG - chr3.2:51666595-51666614 MS.gene05690:intron 35.0%
TAAGTCTCTTGACTCTTTCT+AGG + chr3.2:51667085-51667104 None:intergenic 35.0%
TAGAAACGACTTGTAAGAAG+AGG + chr3.2:51666925-51666944 None:intergenic 35.0%
TCTAACACCTAGTCTCTTAT+TGG + chr3.2:51666466-51666485 None:intergenic 35.0%
TGCAGCAAGCTTCAATATTT+GGG - chr3.2:51667126-51667145 MS.gene05690:intron 35.0%
TTCACATTCTTACCTCTACA+GGG - chr3.2:51667738-51667757 MS.gene05690:intron 35.0%
TTTCACATTCTTACCTCTAC+AGG - chr3.2:51667737-51667756 MS.gene05690:intron 35.0%
! AAGTTCATTTGGGATTGAAG+AGG - chr3.2:51665781-51665800 MS.gene05690:CDS 35.0%
! ATCAGCTGCAAGAATTTTCT+CGG + chr3.2:51667839-51667858 None:intergenic 35.0%
!! CAATTTTGTTTCGGAATTGG+TGG - chr3.2:51666972-51666991 MS.gene05690:intron 35.0%
!! CTTATTGGCTTAAATCAAGG+TGG + chr3.2:51666451-51666470 None:intergenic 35.0%
AGAAACTAGGGAGGTTCAAT+TGG - chr3.2:51667503-51667522 MS.gene05690:intron 40.0%
AGGAAATCACCTTTCGACTT+TGG - chr3.2:51666288-51666307 MS.gene05690:intron 40.0%
ATATGCTGTTGCTGACGAAA+TGG - chr3.2:51667560-51667579 MS.gene05690:intron 40.0%
ATCCTATACTCACCGTATTG+AGG - chr3.2:51667428-51667447 MS.gene05690:CDS 40.0%
ATCGTGTGATCATGTTTACC+AGG - chr3.2:51667295-51667314 MS.gene05690:intron 40.0%
ATCTCATCGAGTTCAGCATT+AGG + chr3.2:51666084-51666103 None:intergenic 40.0%
ATGCCGGAAGAAGTTCATTT+GGG - chr3.2:51665771-51665790 MS.gene05690:CDS 40.0%
ATTCTCTCTTTCTCTCACCA+GGG - chr3.2:51667344-51667363 MS.gene05690:CDS 40.0%
ATTCTGACTCCAAAGTCGAA+AGG + chr3.2:51666300-51666319 None:intergenic 40.0%
CAATTCATCATTGACGGAGT+TGG + chr3.2:51665708-51665727 None:intergenic 40.0%
CAGCAAGCTTCAATATTTGG+GGG - chr3.2:51667128-51667147 MS.gene05690:intron 40.0%
CTCCTGGTAAACATCCATAA+AGG - chr3.2:51667799-51667818 MS.gene05690:CDS 40.0%
CTTGCTCAAATCTAAGCTTC+TGG + chr3.2:51667920-51667939 None:intergenic 40.0%
GAAATGGGTCTCACTTAAAG+CGG + chr3.2:51666415-51666434 None:intergenic 40.0%
GATCCTTCTCCTATTGATGA+CGG - chr3.2:51665803-51665822 MS.gene05690:CDS 40.0%
GATGAATTTCAATGTGGTGC+AGG - chr3.2:51666692-51666711 MS.gene05690:intron 40.0%
GCAGCAAGCTTCAATATTTG+GGG - chr3.2:51667127-51667146 MS.gene05690:intron 40.0%
GGAGTTGGATTCATCTTTGT+TGG + chr3.2:51665693-51665712 None:intergenic 40.0%
GTCAAATGTCCGTCATCAAT+AGG + chr3.2:51665815-51665834 None:intergenic 40.0%
GTGCAGCAAGCTTCAATATT+TGG - chr3.2:51667125-51667144 MS.gene05690:intron 40.0%
TTATAAACCTGCTGTCCTGT+GGG + chr3.2:51667778-51667797 None:intergenic 40.0%
TTCAAACCTTCTTGCAGATC+TGG - chr3.2:51667377-51667396 MS.gene05690:CDS 40.0%
TTGCTGACGAAATGGTCTTT+AGG - chr3.2:51667568-51667587 MS.gene05690:intron 40.0%
TTTGACAGTTTCGCCACAAA+AGG - chr3.2:51665829-51665848 MS.gene05690:CDS 40.0%
TTTGTTCAGTCAACTGGTCA+AGG + chr3.2:51666258-51666277 None:intergenic 40.0%
! CAAATCTAAGCTTCTGGAAG+TGG + chr3.2:51667914-51667933 None:intergenic 40.0%
!! AATATTGAAGCTTGCTGCAC+TGG + chr3.2:51667125-51667144 None:intergenic 40.0%
!! TTTCGACTTTGGAGTCAGAA+TGG - chr3.2:51666299-51666318 MS.gene05690:intron 40.0%
AAGATGAACCCCTGAATAGC+AGG - chr3.2:51667974-51667993 MS.gene05690:CDS 45.0%
ACAGCAGGTTTATAAGCTCC+TGG - chr3.2:51667783-51667802 MS.gene05690:intron 45.0%
AGCAGCAGAAAGTAGCATCT+AGG - chr3.2:51667403-51667422 MS.gene05690:CDS 45.0%
AGTGCTCTTTCTCTCTTCCA+AGG + chr3.2:51666734-51666753 None:intergenic 45.0%
CAGTGACACTTCTATCAGTC+AGG - chr3.2:51665667-51665686 MS.gene05690:CDS 45.0%
CAGTGCTCAAACTCTCTTGT+AGG + chr3.2:51666655-51666674 None:intergenic 45.0%
CATTCTCTCTTTCTCTCACC+AGG - chr3.2:51667343-51667362 MS.gene05690:CDS 45.0%
CTATCCATGAACGCTTGCAT+CGG - chr3.2:51667535-51667554 MS.gene05690:intron 45.0%
CTCCTCAATACGGTGAGTAT+AGG + chr3.2:51667433-51667452 None:intergenic 45.0%
CTTATAAACCTGCTGTCCTG+TGG + chr3.2:51667779-51667798 None:intergenic 45.0%
CTTTCTTTGCTTCCCTGTAG+AGG + chr3.2:51667753-51667772 None:intergenic 45.0%
GAAGCAAAGAAAGATCCCAC+AGG - chr3.2:51667760-51667779 MS.gene05690:intron 45.0%
GAGACACAGACACGTGAAAT+AGG - chr3.2:51665635-51665654 MS.gene05690:CDS 45.0%
GATGAAAGCTGCAGCTGAAA+TGG - chr3.2:51666201-51666220 MS.gene05690:CDS 45.0%
GATGCCGGAAGAAGTTCATT+TGG - chr3.2:51665770-51665789 MS.gene05690:CDS 45.0%
GGATCCCACACTTTCGAAAT+GGG + chr3.2:51666430-51666449 None:intergenic 45.0%
GGATGCTATAAGAAACCCCT+TGG - chr3.2:51666714-51666733 MS.gene05690:intron 45.0%
GGTAGAAGTCAACAGACTGT+TGG + chr3.2:51666237-51666256 None:intergenic 45.0%
GTGCTCTTTCTCTCTTCCAA+GGG + chr3.2:51666733-51666752 None:intergenic 45.0%
TCAACTGTGCCTGCTATTCA+GGG + chr3.2:51667986-51668005 None:intergenic 45.0%
TGAGACCCATTTCGAAAGTG+TGG - chr3.2:51666422-51666441 MS.gene05690:intron 45.0%
TGCTCTTTCTCTCTTCCAAG+GGG + chr3.2:51666732-51666751 None:intergenic 45.0%
TGGATCCCACACTTTCGAAA+TGG + chr3.2:51666431-51666450 None:intergenic 45.0%
TGTCCGTCATCAATAGGAGA+AGG + chr3.2:51665809-51665828 None:intergenic 45.0%
! AAAGTTGAGAGAAGTGCAGC+AGG - chr3.2:51666804-51666823 MS.gene05690:CDS 45.0%
! GAGACCCATTTCGAAAGTGT+GGG - chr3.2:51666423-51666442 MS.gene05690:intron 45.0%
! GCTGCACTTCTCTCAACTTT+TGG + chr3.2:51666804-51666823 None:intergenic 45.0%
! GCTTTTCCAGATCTGCAAGA+AGG + chr3.2:51667386-51667405 None:intergenic 45.0%
! TCTAAGCTTCTGGAAGTGGA+AGG + chr3.2:51667910-51667929 None:intergenic 45.0%
!! ACTGATAGAAGTGTCACTGC+TGG + chr3.2:51665666-51665685 None:intergenic 45.0%
!! AGAGAGAAAGAGCACTCTTG+AGG - chr3.2:51666738-51666757 MS.gene05690:intron 45.0%
!! GACTTTGGAGTCAGAATGGT+AGG - chr3.2:51666303-51666322 MS.gene05690:intron 45.0%
ATGGGTCTCACTTAAAGCGG+TGG + chr3.2:51666412-51666431 None:intergenic 50.0%
ATGTCCGATGCAAGCGTTCA+TGG + chr3.2:51667542-51667561 None:intergenic 50.0%
CAACTGTGCCTGCTATTCAG+GGG + chr3.2:51667985-51668004 None:intergenic 50.0%
GTTTGAATGTTCCTCCTCCC+TGG + chr3.2:51667364-51667383 None:intergenic 50.0%
TGGGTCTCACTTAAAGCGGT+GGG + chr3.2:51666411-51666430 None:intergenic 50.0%
! TGGAGCATTACACGTGCATC+TGG + chr3.2:51666784-51666803 None:intergenic 50.0%
!! GACATAGGAGAGGTTGATGC+CGG - chr3.2:51665755-51665774 MS.gene05690:CDS 50.0%
CTCTCTTTCTCTCACCAGGG+AGG - chr3.2:51667347-51667366 MS.gene05690:CDS 55.0%
GAAAGATCCCACAGGACAGC+AGG - chr3.2:51667768-51667787 MS.gene05690:intron 55.0%
TCTTTCTCTCACCAGGGAGG+AGG - chr3.2:51667350-51667369 MS.gene05690:CDS 55.0%
! GCTTCTGGAAGTGGAAGGTG+TGG + chr3.2:51667905-51667924 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 51665632 51668005 51665632 ID=MS.gene05690
chr3.2 mRNA 51665632 51668005 51665632 ID=MS.gene05690.t1;Parent=MS.gene05690
chr3.2 exon 51667787 51668005 51667787 ID=MS.gene05690.t1.exon1;Parent=MS.gene05690.t1
chr3.2 CDS 51667787 51668005 51667787 ID=cds.MS.gene05690.t1;Parent=MS.gene05690.t1
chr3.2 exon 51667317 51667507 51667317 ID=MS.gene05690.t1.exon2;Parent=MS.gene05690.t1
chr3.2 CDS 51667317 51667507 51667317 ID=cds.MS.gene05690.t1;Parent=MS.gene05690.t1
chr3.2 exon 51666777 51666923 51666777 ID=MS.gene05690.t1.exon3;Parent=MS.gene05690.t1
chr3.2 CDS 51666777 51666923 51666777 ID=cds.MS.gene05690.t1;Parent=MS.gene05690.t1
chr3.2 exon 51666048 51666272 51666048 ID=MS.gene05690.t1.exon4;Parent=MS.gene05690.t1
chr3.2 CDS 51666048 51666272 51666048 ID=cds.MS.gene05690.t1;Parent=MS.gene05690.t1
chr3.2 exon 51665632 51665878 51665632 ID=MS.gene05690.t1.exon5;Parent=MS.gene05690.t1
chr3.2 CDS 51665632 51665878 51665632 ID=cds.MS.gene05690.t1;Parent=MS.gene05690.t1
Gene Sequence

>MS.gene05690

ATGGAGACACAGACACGTGAAATAGGAAGTACCAGCAGTGACACTTCTATCAGTCAGGCCAACAAAGATGAATCCAACTCCGTCAATGATGAATTGAATAGTGTATTGAATGTAAATAAATTGGACATAGGAGAGGTTGATGCCGGAAGAAGTTCATTTGGGATTGAAGAGGATCCTTCTCCTATTGATGACGGACATTTGACAGTTTCGCCACAAAAGGTATCTTTCATAAAAATTCTCATGATATTCTATTCTTAAGCTTATACCCAGTCAAAGAAGTTATGCTTATATTCAGCTCTCAAGCTTCTTTCTATATTTAATATCTCCAAACATATGAAATGTGTAGAATACAGAAAACTTGTTGAATGTTCAAAAACTTTCTTATTTTGTCTTATGAATATTGCATGTGCAAACTTGAAATATATGGCTGTGCGCTTCTTTTCTTTAGACCTAATGCTGAACTCGATGAGATTCGATACTGATAGATATCAAATTCAGGAGAAAGAACTCATTGATGAAGTAACTGTAAGAAGTTCAGAAGTGGAACATCTTGAACAAGAATTGGAACTGATGAAAGCTGCAGCTGAAATGGCATTTAATAACCAACAGTCTGTTGACTTCTACCTTGACCAGTTGACTGAACAAATACTTGCTAAAGGAAATCACCTTTCGACTTTGGAGTCAGAATGGTAGGTCAAAGTGTCTCTATCACTCTATGTCATTTACCACAAATCTCTCTTTTTAACACTCTCTTATTGGATGAAATCAATGTATGTCCCACCGCTTTAAGTGAGACCCATTTCGAAAGTGTGGGATCCACCTTGATTTAAGCCAATAAGAGACTAGGTGTTAGAGAGAGTGTTGCTAGCACTACTCTAGAGTTATTCAGTGTTCAACTTTTCCCTTTCCAATAAAGAAGAAATTGACATATACATGCACATACAAACGTAAATGTATGAATGCGTGCATTTGTAAGATGAAACCGGCATTTCATAAGCACAGAATTGTTATCTTTCTTTTCCTACAAGAGAGTTTGAGCACTGAAAAGATTGTTATATTCGATGAATTTCAATGTGGTGCAGGGATGCTATAAGAAACCCCTTGGAAGAGAGAAAGAGCACTCTTGAGGAGTCTCTATATTCAAGCAGTCCAGATGCACGTGTAATGCTCCAAAAGTTGAGAGAAGTGCAGCAGGAAGAAAATTCCATTTCATATGAAATTAGAAAGAGGTGCATTTCCAAATTCCAAGTATAGTTCATTTTACTTTTTTACCCGAATATACATTATAAGCCTCTTCTTACAAGTCGTTTCTAGACACATTCATCGAGTCGCATGTTTTACAATTTTGTTTCGGAATTGGTGGTTCATAATATACAGCTTTTTCTTTTATCATCCTTCTTGATTCCCATCAAGTATTGCTTAAATGAAGATTGTTGTGTTCTATATGCTTCCTAGAAAGAGTCAAGAGACTTATAAAAAGAAGTCTTGCACCAGTGCAGCAAGCTTCAATATTTGGGGGAAAAGTGTCATTATATATCCATTATATCTTTACTTTGTAATAGAATCACAACTACACCGGATTCACCTAATATAATAGACCAAGTGTGTCAAAATTTCAACTGATTTTAACTTAATTATGTAATGCTTTCAGTATATCGATGTCATCGTGTGATCATGTTTACCAGGATGATGAATATGCCTTATTGACTTACATTCTCTCTTTCTCTCACCAGGGAGGAGGAACATTCAAACCTTCTTGCAGATCTGGAAAAGCAGCAGAAAGTAGCATCTAGGAAATCCTATACTCACCGTATTGAGGAGATTACAAAAAATAGTCGCAAACAAGATGCTGATATTGAGAGGATCTTAAAAGAAACTAGGGAGGTTCAATTGGAAAGTAATTCTATCCATGAACGCTTGCATCGGACATATGCTGTTGCTGACGAAATGGTCTTTAGGTATGAAAGTTTTTCTTGTATTTGTAACAGAGAGATGAAGAGACAATGTAGCACCATGTGTTTGTAGAGATATTGCTATGTTTTTTTTTCTTTTTTTTTTCTTTCATGGTTGATTTTTTTTGCCAAAAGTAAATAATTTACAATTTGTTTCACATTCTTACCTCTACAGGGAAGCAAAGAAAGATCCCACAGGACAGCAGGTTTATAAGCTCCTGGTAAACATCCATAAAGGTTTCGAACAAATATCCGAGAAAATTCTTGCAGCTGATAGAATTAGAAGAGAAGTATCTGAATATGAAATGAAACTGGCAGCCACACCTTCCACTTCCAGAAGCTTAGATTTGAGCAAGCTACAATCTGATCTTGATGCCGTTATTATTAGGGAAGATGAACCCCTGAATAGCAGGCACAGTTGA

Protein sequence

>MS.gene05690.t1

METQTREIGSTSSDTSISQANKDESNSVNDELNSVLNVNKLDIGEVDAGRSSFGIEEDPSPIDDGHLTVSPQKEKELIDEVTVRSSEVEHLEQELELMKAAAEMAFNNQQSVDFYLDQLTEQILAKGNHLSTLESEWDAIRNPLEERKSTLEESLYSSSPDARVMLQKLREVQQEENSISYEIRKREEEHSNLLADLEKQQKVASRKSYTHRIEEITKNSRKQDADIERILKETREVQLESNSIHERLHRTYAVADEMVFREAKKDPTGQQVYKLLVNIHKGFEQISEKILAADRIRREVSEYEMKLAATPSTSRSLDLSKLQSDLDAVIIREDEPLNSRHS