Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25669.t1 | XP_013450334.1 | 95.1 | 285 | 14 | 0 | 1 | 285 | 1 | 285 | 1.80E-152 | 548.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25669.t1 | Q9FVQ0 | 48.6 | 278 | 143 | 0 | 8 | 285 | 5 | 282 | 2.8e-77 | 290.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25669.t1 | A0A072U3V7 | 95.1 | 285 | 14 | 0 | 1 | 285 | 1 | 285 | 1.3e-152 | 548.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049983 | MS.gene25669 | 0.80384 | 2.88E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene25669 | 0.800826 | 1.20E-48 | -1.69E-46 |
| MS.gene050359 | MS.gene25669 | 0.812075 | 5.09E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene25669 | 0.805577 | 1.25E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene25669 | 0.800806 | 1.21E-48 | -1.69E-46 |
| MS.gene052609 | MS.gene25669 | 0.827669 | 1.38E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene25669 | 0.811906 | 5.54E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene25669 | 0.812787 | 3.56E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene25669 | 0.814253 | 1.69E-51 | -1.69E-46 |
| MS.gene057371 | MS.gene25669 | 0.817081 | 3.97E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene25669 | 0.833185 | 6.17E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25669.t1 | MTR_7g107690 | 95.088 | 285 | 14 | 0 | 1 | 285 | 1 | 285 | 0.0 | 558 |
| MS.gene25669.t1 | MTR_7g107710 | 67.025 | 279 | 91 | 1 | 8 | 285 | 6 | 284 | 3.97e-138 | 395 |
| MS.gene25669.t1 | MTR_3g088925 | 50.719 | 278 | 137 | 0 | 8 | 285 | 7 | 284 | 7.22e-102 | 303 |
| MS.gene25669.t1 | MTR_8g432640 | 49.640 | 278 | 140 | 0 | 8 | 285 | 6 | 283 | 1.50e-101 | 302 |
| MS.gene25669.t1 | MTR_5g033260 | 50.360 | 278 | 138 | 0 | 8 | 285 | 6 | 283 | 2.75e-101 | 301 |
| MS.gene25669.t1 | MTR_3g088945 | 50.360 | 278 | 138 | 0 | 8 | 285 | 7 | 284 | 6.77e-101 | 300 |
| MS.gene25669.t1 | MTR_4g051642 | 50.000 | 278 | 139 | 0 | 8 | 285 | 7 | 284 | 1.09e-99 | 298 |
| MS.gene25669.t1 | MTR_3g088955 | 49.640 | 278 | 140 | 0 | 8 | 285 | 7 | 284 | 7.74e-99 | 295 |
| MS.gene25669.t1 | MTR_1g069275 | 48.410 | 283 | 138 | 3 | 9 | 285 | 26 | 306 | 4.26e-96 | 289 |
| MS.gene25669.t1 | MTR_3g109520 | 47.703 | 283 | 143 | 1 | 9 | 286 | 40 | 322 | 2.04e-95 | 288 |
| MS.gene25669.t1 | MTR_6g086870 | 47.018 | 285 | 143 | 2 | 9 | 285 | 21 | 305 | 1.00e-93 | 283 |
| MS.gene25669.t1 | MTR_7g099330 | 46.809 | 282 | 139 | 3 | 9 | 285 | 25 | 300 | 2.86e-93 | 282 |
| MS.gene25669.t1 | MTR_1g046230 | 47.183 | 284 | 143 | 2 | 9 | 285 | 25 | 308 | 4.22e-92 | 279 |
| MS.gene25669.t1 | MTR_1g008380 | 48.057 | 283 | 141 | 2 | 9 | 286 | 43 | 324 | 5.18e-92 | 279 |
| MS.gene25669.t1 | MTR_1g011630 | 43.972 | 282 | 149 | 2 | 9 | 285 | 17 | 294 | 4.87e-87 | 266 |
| MS.gene25669.t1 | MTR_7g099160 | 43.458 | 214 | 110 | 3 | 77 | 285 | 214 | 421 | 3.95e-56 | 189 |
| MS.gene25669.t1 | MTR_3g096030 | 40.113 | 177 | 82 | 1 | 8 | 184 | 6 | 158 | 1.14e-44 | 149 |
| MS.gene25669.t1 | MTR_1g041605 | 87.500 | 40 | 5 | 0 | 112 | 151 | 29 | 68 | 1.39e-18 | 78.6 |
| MS.gene25669.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 3.16e-14 | 71.6 |
| MS.gene25669.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 4.30e-14 | 71.6 |
| MS.gene25669.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 7.22e-14 | 71.6 |
| MS.gene25669.t1 | MTR_3g437580 | 24.370 | 238 | 141 | 5 | 4 | 205 | 9 | 243 | 5.97e-13 | 68.6 |
| MS.gene25669.t1 | MTR_8g037880 | 23.684 | 228 | 141 | 6 | 7 | 206 | 3 | 225 | 1.09e-12 | 68.2 |
| MS.gene25669.t1 | MTR_3g437580 | 24.370 | 238 | 141 | 5 | 4 | 205 | 9 | 243 | 1.34e-12 | 67.8 |
| MS.gene25669.t1 | MTR_5g012130 | 30.657 | 137 | 86 | 5 | 72 | 205 | 126 | 256 | 9.12e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25669.t1 | AT1G48910 | 48.561 | 278 | 143 | 0 | 8 | 285 | 5 | 282 | 2.26e-102 | 304 |
| MS.gene25669.t1 | AT4G13260 | 46.454 | 282 | 146 | 1 | 9 | 285 | 29 | 310 | 2.44e-95 | 283 |
| MS.gene25669.t1 | AT1G04610 | 47.368 | 285 | 142 | 3 | 9 | 285 | 38 | 322 | 7.75e-94 | 284 |
| MS.gene25669.t1 | AT4G13260 | 46.454 | 282 | 146 | 1 | 9 | 285 | 29 | 310 | 2.01e-93 | 282 |
| MS.gene25669.t1 | AT4G28720 | 46.127 | 284 | 146 | 3 | 9 | 285 | 26 | 309 | 2.02e-93 | 283 |
| MS.gene25669.t1 | AT5G25620 | 47.887 | 284 | 139 | 3 | 9 | 285 | 33 | 314 | 4.57e-93 | 281 |
| MS.gene25669.t1 | AT5G25620 | 47.887 | 284 | 139 | 3 | 9 | 285 | 33 | 314 | 7.96e-93 | 281 |
| MS.gene25669.t1 | AT1G21430 | 44.803 | 279 | 151 | 2 | 8 | 285 | 9 | 285 | 3.36e-91 | 276 |
| MS.gene25669.t1 | AT5G11320 | 46.099 | 282 | 141 | 2 | 9 | 285 | 18 | 293 | 5.75e-90 | 271 |
| MS.gene25669.t1 | AT1G04180 | 46.643 | 283 | 143 | 3 | 9 | 285 | 26 | 306 | 1.22e-89 | 273 |
| MS.gene25669.t1 | AT5G11320 | 46.099 | 282 | 141 | 2 | 9 | 285 | 18 | 293 | 3.22e-89 | 271 |
| MS.gene25669.t1 | AT5G43890 | 45.423 | 284 | 148 | 3 | 9 | 285 | 26 | 309 | 8.64e-89 | 271 |
| MS.gene25669.t1 | AT2G33230 | 45.614 | 285 | 147 | 3 | 9 | 285 | 33 | 317 | 6.96e-87 | 266 |
| MS.gene25669.t1 | AT4G32540 | 43.816 | 283 | 148 | 3 | 9 | 285 | 22 | 299 | 4.80e-85 | 261 |
| MS.gene25669.t1 | AT4G32540 | 43.463 | 283 | 149 | 3 | 9 | 285 | 22 | 299 | 8.67e-85 | 260 |
| MS.gene25669.t1 | AT4G13260 | 40.686 | 204 | 115 | 2 | 87 | 285 | 5 | 207 | 3.71e-52 | 173 |
| MS.gene25669.t1 | AT1G62560 | 26.293 | 232 | 138 | 6 | 5 | 206 | 10 | 238 | 1.03e-15 | 77.0 |
| MS.gene25669.t1 | AT1G62560 | 26.638 | 229 | 135 | 6 | 8 | 206 | 13 | 238 | 1.09e-15 | 77.0 |
| MS.gene25669.t1 | AT1G65860 | 26.316 | 228 | 140 | 3 | 5 | 205 | 10 | 236 | 3.09e-15 | 75.9 |
| MS.gene25669.t1 | AT1G12140 | 27.602 | 221 | 147 | 5 | 49 | 258 | 74 | 292 | 4.63e-14 | 72.4 |
| MS.gene25669.t1 | AT1G12140 | 27.602 | 221 | 147 | 5 | 49 | 258 | 74 | 292 | 4.63e-14 | 72.4 |
| MS.gene25669.t1 | AT1G19250 | 27.049 | 244 | 133 | 10 | 2 | 205 | 7 | 245 | 5.26e-14 | 72.4 |
| MS.gene25669.t1 | AT5G07800 | 26.336 | 262 | 144 | 7 | 2 | 226 | 10 | 259 | 3.08e-13 | 69.7 |
| MS.gene25669.t1 | AT5G61290 | 27.386 | 241 | 135 | 6 | 1 | 205 | 9 | 245 | 4.27e-13 | 69.3 |
| MS.gene25669.t1 | AT1G12160 | 25.704 | 284 | 171 | 8 | 8 | 258 | 12 | 288 | 4.78e-13 | 69.3 |
| MS.gene25669.t1 | AT1G62620 | 22.709 | 251 | 155 | 5 | 8 | 222 | 13 | 260 | 4.06e-12 | 66.2 |
| MS.gene25669.t1 | AT1G62620 | 22.709 | 251 | 155 | 5 | 8 | 222 | 13 | 260 | 5.39e-12 | 66.2 |
| MS.gene25669.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 5 | 205 | 10 | 236 | 5.70e-12 | 66.2 |
| MS.gene25669.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 5 | 205 | 10 | 236 | 6.01e-12 | 65.9 |
| MS.gene25669.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 5 | 205 | 10 | 236 | 6.13e-12 | 65.9 |
| MS.gene25669.t1 | AT1G12200 | 29.255 | 188 | 121 | 6 | 80 | 258 | 113 | 297 | 2.06e-11 | 64.3 |
| MS.gene25669.t1 | AT1G12200 | 29.570 | 186 | 119 | 6 | 82 | 258 | 115 | 297 | 2.20e-11 | 64.3 |
| MS.gene25669.t1 | AT1G12140 | 27.149 | 221 | 146 | 6 | 49 | 258 | 74 | 290 | 2.86e-11 | 63.9 |
| MS.gene25669.t1 | AT1G62600 | 26.131 | 199 | 132 | 5 | 69 | 258 | 105 | 297 | 8.55e-11 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAATAAATATATAAATGA+CGG | - | 51702:2070-2089 | MS.gene25669:CDS | 10.0% |
| !! | AAAACAAAACAAAAAACATT+TGG | + | 51702:1651-1670 | MS.gene25669:intergenic | 15.0% |
| !! | AGAATAAATATATAAATGAC+GGG | - | 51702:2071-2090 | MS.gene25669:CDS | 15.0% |
| !!! | TATTGTAAAAACTTTTGTTT+AGG | + | 51702:1182-1201 | MS.gene25669:intergenic | 15.0% |
| !! | ATTAGTATAAAGTATATCTG+AGG | + | 51702:2260-2279 | MS.gene25669:intergenic | 20.0% |
| !! | TTAGTATAAAGTATATCTGA+GGG | + | 51702:2259-2278 | MS.gene25669:intergenic | 20.0% |
| ! | AAAACTCTATATCAGACTAT+AGG | - | 51702:1807-1826 | MS.gene25669:intron | 25.0% |
| ! | AATGAAAGAGTAATAGTTGT+TGG | - | 51702:963-982 | MS.gene25669:CDS | 25.0% |
| ! | AATTAAGTCTCAAGAGTTAA+AGG | - | 51702:2535-2554 | MS.gene25669:CDS | 25.0% |
| ! | ATGCTTAGTAAAATGGTTTA+CGG | - | 51702:2410-2429 | MS.gene25669:CDS | 25.0% |
| ! | GATTACAAATACAGATTTGT+AGG | + | 51702:1770-1789 | MS.gene25669:intergenic | 25.0% |
| ! | TACTTGACCTTCATATAAAA+GGG | + | 51702:2476-2495 | MS.gene25669:intergenic | 25.0% |
| ! | TGTGATTGATTATGTAACTT+TGG | - | 51702:2188-2207 | MS.gene25669:CDS | 25.0% |
| !! | AGATTTTGTATAGAATTGCA+CGG | - | 51702:1973-1992 | MS.gene25669:CDS | 25.0% |
| !! | TTTTATATGAAGGTCAAGTA+CGG | - | 51702:2476-2495 | MS.gene25669:CDS | 25.0% |
| !!! | AAAATTGTTTTGCTTCACTA+TGG | - | 51702:1060-1079 | MS.gene25669:CDS | 25.0% |
| !!! | CAACAAAAAGGTTTTTTACT+CGG | + | 51702:1836-1855 | MS.gene25669:intergenic | 25.0% |
| !!! | TTTTGTTTAGGAATGTATGA+TGG | + | 51702:1170-1189 | MS.gene25669:intergenic | 25.0% |
| AAAATTATAGACAGAGCACA+TGG | + | 51702:1721-1740 | MS.gene25668:intergenic | 30.0% | |
| AAGTATCCTATTATTGACGT+TGG | - | 51702:2500-2519 | MS.gene25669:CDS | 30.0% | |
| AGAATTGCACGGATATATAT+GGG | - | 51702:1984-2003 | MS.gene25669:CDS | 30.0% | |
| ATTCAACTGGGTTTAAGAAT+GGG | - | 51702:1432-1451 | MS.gene25669:intron | 30.0% | |
| GTACTTGACCTTCATATAAA+AGG | + | 51702:2477-2496 | MS.gene25669:intergenic | 30.0% | |
| TAGAATTGCACGGATATATA+TGG | - | 51702:1983-2002 | MS.gene25669:CDS | 30.0% | |
| TTTGATGTGTGCATCTTAAA+AGG | + | 51702:1674-1693 | MS.gene25669:intergenic | 30.0% | |
| ! | CAAAACAATTTTCTCTTTCG+AGG | + | 51702:1052-1071 | MS.gene25669:intergenic | 30.0% |
| ! | CTTCAATTTCAGGTACAAAA+GGG | + | 51702:1382-1401 | MS.gene25669:intergenic | 30.0% |
| ! | CTTTTGTACCTGAAATTGAA+GGG | - | 51702:1381-1400 | MS.gene25669:intron | 30.0% |
| ! | TCTGATGAAGTATTTGTCAA+TGG | - | 51702:2364-2383 | MS.gene25669:CDS | 30.0% |
| ! | TTGAGACTTAATTTTGCGAA+AGG | + | 51702:2528-2547 | MS.gene25669:intergenic | 30.0% |
| !! | ATGAACATGTTCTTGTTGTT+GGG | - | 51702:1468-1487 | MS.gene25669:intron | 30.0% |
| !!! | CCTTTTTGTTGATGATGAAA+CGG | - | 51702:1845-1864 | MS.gene25669:intron | 30.0% |
| !!! | CTTTTTGTTGATGATGAAAC+GGG | - | 51702:1846-1865 | MS.gene25669:intron | 30.0% |
| AAGGCTATGAATAAGGATTC+CGG | - | 51702:1299-1318 | MS.gene25669:intron | 35.0% | |
| AAGGTTCCAACGTCAATAAT+AGG | + | 51702:2509-2528 | MS.gene25669:intergenic | 35.0% | |
| ACGAATACAATGTAATGTGC+AGG | - | 51702:2301-2320 | MS.gene25669:CDS | 35.0% | |
| AGTTGAATGAATCACTTTCC+CGG | + | 51702:1420-1439 | MS.gene25669:intergenic | 35.0% | |
| CATTCAACTGGGTTTAAGAA+TGG | - | 51702:1431-1450 | MS.gene25669:intron | 35.0% | |
| CCGTTTCATCATCAACAAAA+AGG | + | 51702:1848-1867 | MS.gene25669:intergenic | 35.0% | |
| GATGTCACAAATTATGGAGT+TGG | - | 51702:2434-2453 | MS.gene25669:CDS | 35.0% | |
| GGAAAGTGATTCATTCAACT+GGG | - | 51702:1420-1439 | MS.gene25669:intron | 35.0% | |
| GGATTGTATAAGGAATGGAT+TGG | + | 51702:1031-1050 | MS.gene25669:intergenic | 35.0% | |
| TACGGAGATGTCACAAATTA+TGG | - | 51702:2428-2447 | MS.gene25669:CDS | 35.0% | |
| TCTCTTTCGAGGATTGTATA+AGG | + | 51702:1041-1060 | MS.gene25669:intergenic | 35.0% | |
| TTCGAGGATTGTATAAGGAA+TGG | + | 51702:1036-1055 | MS.gene25669:intergenic | 35.0% | |
| ! | ATGTATGATGGAAAAGAAGG+TGG | + | 51702:1158-1177 | MS.gene25669:intergenic | 35.0% |
| ! | CCTTCAATTTCAGGTACAAA+AGG | + | 51702:1383-1402 | MS.gene25669:intergenic | 35.0% |
| ! | CCTTTTGTACCTGAAATTGA+AGG | - | 51702:1380-1399 | MS.gene25669:intron | 35.0% |
| ! | GAAGTATTTGTCAATGGAGA+TGG | - | 51702:2370-2389 | MS.gene25669:CDS | 35.0% |
| ! | GATGAACATGTTCTTGTTGT+TGG | - | 51702:1467-1486 | MS.gene25669:intron | 35.0% |
| ! | GATGGTGATGCTTAGTAAAA+TGG | - | 51702:2403-2422 | MS.gene25669:CDS | 35.0% |
| ! | GGAATATGAAGGAAGGTTTT+TGG | - | 51702:1331-1350 | MS.gene25669:intron | 35.0% |
| ! | GGAATGTATGATGGAAAAGA+AGG | + | 51702:1161-1180 | MS.gene25669:intergenic | 35.0% |
| ! | GTTAGCTGTTGATTATACGT+AGG | - | 51702:2145-2164 | MS.gene25669:CDS | 35.0% |
| ! | TCACAAATTATGGAGTTGGT+AGG | - | 51702:2438-2457 | MS.gene25669:CDS | 35.0% |
| ! | TGTATGATGGAAAAGAAGGT+GGG | + | 51702:1157-1176 | MS.gene25669:intergenic | 35.0% |
| !! | ATGATGAAGGTTCTGAGAAA+TGG | - | 51702:1270-1289 | MS.gene25669:intron | 35.0% |
| !! | TTCTGGAATGGAAATTGCAT+TGG | - | 51702:1499-1518 | MS.gene25669:intron | 35.0% |
| !!! | GCTCGCAAAATTGTTTTTTG+AGG | + | 51702:1118-1137 | MS.gene25669:intergenic | 35.0% |
| AAAGTATATCTGAGGGTGAC+AGG | + | 51702:2252-2271 | MS.gene25668:intergenic | 40.0% | |
| AATATTCCCTTCACGGAAGA+TGG | - | 51702:1948-1967 | MS.gene25669:CDS | 40.0% | |
| AATCTTACCATCTTCCGTGA+AGG | + | 51702:1958-1977 | MS.gene25669:intergenic | 40.0% | |
| AGAGTAATAGTTGTTGGAGC+AGG | - | 51702:969-988 | MS.gene25669:CDS | 40.0% | |
| AGGTTGAGGAATATGAAGGA+AGG | - | 51702:1324-1343 | MS.gene25669:intron | 40.0% | |
| ATCTTACCATCTTCCGTGAA+GGG | + | 51702:1957-1976 | MS.gene25669:intergenic | 40.0% | |
| ATCTTCCGTGAAGGGAATAT+TGG | + | 51702:1949-1968 | MS.gene25669:intergenic | 40.0% | |
| CTCTTCAACCCTTCAATTTC+AGG | + | 51702:1392-1411 | MS.gene25669:intergenic | 40.0% | |
| GAAGGTGAAGGCTATGAATA+AGG | - | 51702:1292-1311 | MS.gene25669:intron | 40.0% | |
| GAGAATGCAGAGTATGATGA+AGG | - | 51702:1257-1276 | MS.gene25669:intron | 40.0% | |
| GCATTGGATCTTATCAACCA+TGG | - | 51702:1515-1534 | MS.gene25669:intron | 40.0% | |
| GGGAAAGTGATTCATTCAAC+TGG | - | 51702:1419-1438 | MS.gene25669:intron | 40.0% | |
| GTATTTGTCAATGGAGATGG+TGG | - | 51702:2373-2392 | MS.gene25669:CDS | 40.0% | |
| TATGAATAAGGATTCCGGTG+AGG | - | 51702:1304-1323 | MS.gene25669:intron | 40.0% | |
| TCAAGTGGCATGCTGAATTT+GGG | - | 51702:2335-2354 | MS.gene25669:CDS | 40.0% | |
| TCTTCCGTGAAGGGAATATT+GGG | + | 51702:1948-1967 | MS.gene25669:intergenic | 40.0% | |
| TTCATATTCCTCAACCTCAC+CGG | + | 51702:1321-1340 | MS.gene25669:intergenic | 40.0% | |
| ! | AAGGGTTGAAGAGTTTTACC+GGG | - | 51702:1399-1418 | MS.gene25669:intron | 40.0% |
| ! | CAGGTTCACATTTTGTCAAG+TGG | - | 51702:2320-2339 | MS.gene25669:CDS | 40.0% |
| ! | GAAGGGTTGAAGAGTTTTAC+CGG | - | 51702:1398-1417 | MS.gene25669:intron | 40.0% |
| ! | TAAATGACGGGATGAATGAG+TGG | - | 51702:2083-2102 | MS.gene25669:CDS | 40.0% |
| ! | TTCTGAGAAATGGAAGGTGA+AGG | - | 51702:1280-1299 | MS.gene25669:intron | 40.0% |
| !! | CGATTGAAGTTTTAGCACCA+TGG | + | 51702:1535-1554 | MS.gene25669:intergenic | 40.0% |
| !! | TGAAGGTTCTGAGAAATGGA+AGG | - | 51702:1274-1293 | MS.gene25669:intron | 40.0% |
| !!! | TGAAGGAAGGTTTTTGGTTG+TGG | - | 51702:1337-1356 | MS.gene25669:intron | 40.0% |
| ATATAAAAGGGACCCTCGCT+GGG | + | 51702:2464-2483 | MS.gene25669:intergenic | 45.0% | |
| CAAGTGGCATGCTGAATTTG+GGG | - | 51702:2336-2355 | MS.gene25669:CDS | 45.0% | |
| CTTCCCCAATATTCCCTTCA+CGG | - | 51702:1941-1960 | MS.gene25669:intron | 45.0% | |
| CTTCCGTGAAGGGAATATTG+GGG | + | 51702:1947-1966 | MS.gene25669:intergenic | 45.0% | |
| GATGGAAAAGAAGGTGGGAA+TGG | + | 51702:1152-1171 | MS.gene25669:intergenic | 45.0% | |
| GGTGAGGTTGAGGAATATGA+AGG | - | 51702:1320-1339 | MS.gene25669:intron | 45.0% | |
| GTCAAGTGGCATGCTGAATT+TGG | - | 51702:2334-2353 | MS.gene25669:CDS | 45.0% | |
| GTTGTTGGGTCTGGAAATTC+TGG | - | 51702:1482-1501 | MS.gene25669:intron | 45.0% | |
| TCCACTGTTCTGTGATACAG+AGG | + | 51702:1239-1258 | MS.gene25669:intergenic | 45.0% | |
| TCCTCTGTATCACAGAACAG+TGG | - | 51702:1235-1254 | MS.gene25669:intron | 45.0% | |
| TTCAATCGTCGTTCGAAGCA+AGG | - | 51702:1547-1566 | MS.gene25669:intron | 45.0% | |
| ! | CGAGGGTCCCTTTTATATGA+AGG | - | 51702:2466-2485 | MS.gene25669:CDS | 45.0% |
| ! | TGGGTCTGGAAATTCTGGAA+TGG | - | 51702:1487-1506 | MS.gene25669:intron | 45.0% |
| !! | CATGTTCTTGTTGTTGGGTC+TGG | - | 51702:1473-1492 | MS.gene25669:intron | 45.0% |
| !! | GGAGATGGTGGATTCAATGA+TGG | - | 51702:2385-2404 | MS.gene25669:CDS | 45.0% |
| !!! | AGGTTTTTGGTTGTGGCTAG+TGG | - | 51702:1344-1363 | MS.gene25669:intron | 45.0% |
| CATATAAAAGGGACCCTCGC+TGG | + | 51702:2465-2484 | MS.gene25669:intergenic | 50.0% | |
| CTGCTACTGAGAGACCAGAA+GGG | + | 51702:995-1014 | MS.gene25669:intergenic | 50.0% | |
| TAAGGATTCCGGTGAGGTTG+AGG | - | 51702:1310-1329 | MS.gene25669:intron | 50.0% | |
| ! | GAAGGTGGGAATGGTTTGTG+AGG | + | 51702:1143-1162 | MS.gene25669:intergenic | 50.0% |
| GCTGCTACTGAGAGACCAGA+AGG | + | 51702:996-1015 | MS.gene25669:intergenic | 55.0% | |
| GTTGTTGGAGCAGGCCCTTC+TGG | - | 51702:978-997 | MS.gene25669:CDS | 60.0% | |
| !! | GGAGTTGGTAGGCCCAGCGA+GGG | - | 51702:2449-2468 | MS.gene25669:CDS | 65.0% |
| !! | TGGAGTTGGTAGGCCCAGCG+AGG | - | 51702:2448-2467 | MS.gene25669:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51702 | gene | 951 | 2565 | 951 | ID=MS.gene25669 |
| 51702 | mRNA | 951 | 2565 | 951 | ID=MS.gene25669.t1;Parent=MS.gene25669 |
| 51702 | exon | 1948 | 2565 | 1948 | ID=MS.gene25669.t1.exon1;Parent=MS.gene25669.t1 |
| 51702 | CDS | 1948 | 2565 | 1948 | ID=cds.MS.gene25669.t1;Parent=MS.gene25669.t1 |
| 51702 | exon | 951 | 1193 | 951 | ID=MS.gene25669.t1.exon2;Parent=MS.gene25669.t1 |
| 51702 | CDS | 951 | 1193 | 951 | ID=cds.MS.gene25669.t1;Parent=MS.gene25669.t1 |
| Gene Sequence |
| Protein sequence |
