Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25694.t1 | XP_003601527.1 | 90.5 | 327 | 28 | 3 | 1 | 327 | 1 | 324 | 4.70E-128 | 467.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25694.t1 | G7J8U7 | 90.5 | 327 | 28 | 3 | 1 | 327 | 1 | 324 | 3.4e-128 | 467.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene25694 | 0.818078 | 2.37E-52 | -1.69E-46 |
| MS.gene049173 | MS.gene25694 | 0.838526 | 2.73E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene25694 | 0.81008 | 1.38E-50 | -1.69E-46 |
| MS.gene049627 | MS.gene25694 | 0.814056 | 1.87E-51 | -1.69E-46 |
| MS.gene05100 | MS.gene25694 | 0.80496 | 1.68E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene25694 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene059022 | MS.gene25694 | 0.80279 | 4.75E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene25694 | 0.81511 | 1.09E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene25694 | 0.808769 | 2.63E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25694.t1 | MTR_3g082680 | 88.218 | 331 | 28 | 5 | 1 | 327 | 1 | 324 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25694.t1 | AT2G04360 | 60.806 | 273 | 103 | 2 | 55 | 327 | 49 | 317 | 1.49e-120 | 350 |
| MS.gene25694.t1 | AT2G04360 | 52.866 | 314 | 103 | 3 | 55 | 327 | 49 | 358 | 2.13e-112 | 330 |
| MS.gene25694.t1 | AT2G04360 | 68.116 | 207 | 63 | 1 | 121 | 327 | 17 | 220 | 6.33e-103 | 301 |
| MS.gene25694.t1 | AT2G04360 | 56.881 | 218 | 89 | 3 | 55 | 271 | 49 | 262 | 1.49e-85 | 259 |
Find 71 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAACACTGGCACCATTT+TGG | 0.187033 | 3.3:-69438255 | MS.gene25694:CDS |
| ATATTACCGGTGTCTGGTTT+GGG | 0.250210 | 3.3:+69439881 | None:intergenic |
| TGTTTCTGAATGGTATATTA+TGG | 0.293647 | 3.3:-69439698 | MS.gene25694:CDS |
| ATGATATGACTGCTAGAAAA+TGG | 0.306456 | 3.3:-69438225 | MS.gene25694:intron |
| AGTTTCATTGATACCATTGC+TGG | 0.307701 | 3.3:-69438070 | MS.gene25694:CDS |
| AATCAGATATTACTTGCTTC+GGG | 0.315210 | 3.3:-69438610 | MS.gene25694:intron |
| GTTTCTGAATGGTATATTAT+GGG | 0.317642 | 3.3:-69439697 | MS.gene25694:CDS |
| TATTATGGGTTTGTGGCCTT+TGG | 0.341981 | 3.3:-69439683 | MS.gene25694:CDS |
| ACAGGTTTGACAAAGGTTCT+TGG | 0.347641 | 3.3:-69438101 | MS.gene25694:intron |
| ATATCATTGTAAACCCAAAA+TGG | 0.351254 | 3.3:+69438241 | None:intergenic |
| TTAAGCTGTGTTTCTTCAAC+AGG | 0.360911 | 3.3:+69438873 | None:intergenic |
| TATATTACCGGTGTCTGGTT+TGG | 0.369304 | 3.3:+69439880 | None:intergenic |
| GGTTTCCATAGCACAAAATA+AGG | 0.372685 | 3.3:+69438906 | None:intergenic |
| ATTTGCTTTCCCTGAAGTAC+TGG | 0.383210 | 3.3:+69438530 | None:intergenic |
| AGCAATGGTATCAATGAAAC+TGG | 0.385121 | 3.3:+69438072 | None:intergenic |
| TTGCTGCTACACCATCATTT+CGG | 0.404476 | 3.3:-69440062 | MS.gene25694:CDS |
| AAGTTACAAGTTACAAGATT+GGG | 0.413662 | 3.3:+69440204 | None:intergenic |
| GAATCAGATATTACTTGCTT+CGG | 0.423480 | 3.3:-69438611 | MS.gene25694:intron |
| GAAGTTACAAGTTACAAGAT+TGG | 0.425120 | 3.3:+69440203 | None:intergenic |
| ATATTACTTGCTTCGGGGAT+AGG | 0.428478 | 3.3:-69438604 | MS.gene25694:CDS |
| ATAATTTACGCTAGTTTAGC+CGG | 0.429459 | 3.3:-69438577 | MS.gene25694:CDS |
| TTGAATTTGAAAGGAGATGA+TGG | 0.440690 | 3.3:-69439742 | MS.gene25694:CDS |
| GGTAACTTGACTCTCTTTGT+TGG | 0.445634 | 3.3:+69440008 | None:intergenic |
| TAGTATATATTACCGGTGTC+TGG | 0.446627 | 3.3:+69439875 | None:intergenic |
| CTCCACAACACTGCTGTTGT+TGG | 0.454329 | 3.3:+69439987 | None:intergenic |
| AATGGTATATTATGGGTTTG+TGG | 0.460874 | 3.3:-69439690 | MS.gene25694:CDS |
| TCTTCAACAGGAGGCGGTGG+AGG | 0.472797 | 3.3:+69438885 | None:intergenic |
| GTTTCATTGATACCATTGCT+GGG | 0.486547 | 3.3:-69438069 | MS.gene25694:CDS |
| CAACAGCAGTGTTGTGGAGG+AGG | 0.487609 | 3.3:-69439983 | MS.gene25694:CDS |
| TTCTTTCCACACATCTTCCC+CGG | 0.488058 | 3.3:+69438558 | None:intergenic |
| TGGATTCACTCAGACTCAAC+AGG | 0.489510 | 3.3:+69437988 | None:intergenic |
| CTACTCTTCCTCCGAAATGA+TGG | 0.494266 | 3.3:+69440051 | None:intergenic |
| GCAGACAGGAAGGGCCATAC+AGG | 0.516734 | 3.3:+69438960 | None:intergenic |
| ACAATAACAGTAGTGGCCTC+TGG | 0.517427 | 3.3:-69440144 | MS.gene25694:CDS |
| TAATTTACGCTAGTTTAGCC+GGG | 0.521606 | 3.3:-69438576 | MS.gene25694:CDS |
| TGAGAGTAAAGTAAAATCAA+TGG | 0.530434 | 3.3:+69438273 | None:intergenic |
| AGGAGTTTGTGCAATGGCAG+AGG | 0.533565 | 3.3:+69438008 | None:intergenic |
| AGCATGCTGTTACTTCCCAC+TGG | 0.534575 | 3.3:-69439655 | MS.gene25694:CDS |
| TGTTACTTCCCACTGGAAGA+AGG | 0.536692 | 3.3:-69439648 | MS.gene25694:intron |
| GTTTCTTCAACAGGAGGCGG+TGG | 0.538710 | 3.3:+69438882 | None:intergenic |
| CTGCTTTATACATTCTCCTA+CGG | 0.539301 | 3.3:-69438044 | MS.gene25694:CDS |
| ATCAAGTGCTTGTTTCTGAA+TGG | 0.542025 | 3.3:-69439708 | MS.gene25694:CDS |
| CGTAGGAGAATGTATAAAGC+AGG | 0.556966 | 3.3:+69438045 | None:intergenic |
| TGTGTTTCTTCAACAGGAGG+CGG | 0.558135 | 3.3:+69438879 | None:intergenic |
| TACCAACAACAGCAGTGTTG+TGG | 0.561620 | 3.3:-69439989 | MS.gene25694:CDS |
| AGGTTGATAGTGAGGGCCGT+AGG | 0.564890 | 3.3:+69438028 | None:intergenic |
| AGCTGTGTTTCTTCAACAGG+AGG | 0.576257 | 3.3:+69438876 | None:intergenic |
| TAAAATCAATGGACATAACA+TGG | 0.590376 | 3.3:+69438284 | None:intergenic |
| TATAAAGCAGGCCCCAGCAA+TGG | 0.590930 | 3.3:+69438057 | None:intergenic |
| AGCAGTGTTGTGGAGGAGGA+AGG | 0.592189 | 3.3:-69439979 | MS.gene25694:CDS |
| GGGAAATACCTTCTTCCAGT+GGG | 0.602141 | 3.3:+69439640 | None:intergenic |
| TTTCATTGATACCATTGCTG+GGG | 0.604297 | 3.3:-69438068 | MS.gene25694:CDS |
| TATTACCGGTGTCTGGTTTG+GGG | 0.608819 | 3.3:+69439882 | None:intergenic |
| GAAAGCAACAATAACAGTAG+TGG | 0.613050 | 3.3:-69440151 | MS.gene25694:CDS |
| TCTCTCCCCAAACCAGACAC+CGG | 0.613768 | 3.3:-69439887 | MS.gene25694:intron |
| GTTTAGCCGGGGAAGATGTG+TGG | 0.614056 | 3.3:-69438564 | MS.gene25694:CDS |
| TCAATATACAGGTTTGACAA+AGG | 0.614796 | 3.3:-69438108 | MS.gene25694:intron |
| AGGGAAATACCTTCTTCCAG+TGG | 0.616603 | 3.3:+69439639 | None:intergenic |
| CAACAACAGCAGTGTTGTGG+AGG | 0.624485 | 3.3:-69439986 | MS.gene25694:CDS |
| AACAGCATGCTATATACCAA+AGG | 0.624686 | 3.3:+69439667 | None:intergenic |
| AATGGCAGAGGTTGATAGTG+AGG | 0.627029 | 3.3:+69438020 | None:intergenic |
| ATGGCAGAGGTTGATAGTGA+GGG | 0.631651 | 3.3:+69438021 | None:intergenic |
| CTGCTACACCATCATTTCGG+AGG | 0.639608 | 3.3:-69440059 | MS.gene25694:CDS |
| TGATGGTGTAGCAGCAACAG+AGG | 0.642844 | 3.3:+69440068 | None:intergenic |
| ATCAGATATTACTTGCTTCG+GGG | 0.645648 | 3.3:-69438609 | MS.gene25694:intron |
| CTCAACAGGAGTTTGTGCAA+TGG | 0.646011 | 3.3:+69438002 | None:intergenic |
| GGAATCGAAAGTCACTGCAA+CGG | 0.649464 | 3.3:-69438829 | MS.gene25694:intron |
| GATGGTGTAGCAGCAACAGA+GGG | 0.657144 | 3.3:+69440069 | None:intergenic |
| TAATCTGCAACAACATCCAG+AGG | 0.677492 | 3.3:+69440128 | None:intergenic |
| AATTTACGCTAGTTTAGCCG+GGG | 0.690077 | 3.3:-69438575 | MS.gene25694:CDS |
| AAGAAACACAGCTTAAAACA+TGG | 0.704027 | 3.3:-69438866 | MS.gene25694:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAATATTCAGGTTTTT+TGG | + | chr3.3:69439555-69439574 | None:intergenic | 15.0% |
| !! | AATCATCAAAAATTTAAGCA+CGG | - | chr3.3:69438947-69438966 | MS.gene25694:CDS | 20.0% |
| !! | AGCTTAAAATAATGAATACA+AGG | + | chr3.3:69439758-69439777 | None:intergenic | 20.0% |
| !! | GATAAGATAGTATATATTAC+CGG | + | chr3.3:69438353-69438372 | None:intergenic | 20.0% |
| !! | TAAATAATAATCTCCATGAT+TGG | - | chr3.3:69439469-69439488 | MS.gene25694:intron | 20.0% |
| !! | TAGTAAATTGAGTGAATAAT+AGG | + | chr3.3:69438626-69438645 | None:intergenic | 20.0% |
| !! | TTCGATTCCAAAAAATTTAA+TGG | + | chr3.3:69439378-69439397 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTGAATTTGAA+AGG | - | chr3.3:69438467-69438486 | MS.gene25694:intron | 20.0% |
| !!! | AATTTTACTCTTTCTCTTAT+GGG | - | chr3.3:69438283-69438302 | MS.gene25694:CDS | 20.0% |
| !!! | ATCTTTTATACAGTATGATA+GGG | + | chr3.3:69440077-69440096 | None:intergenic | 20.0% |
| !!! | TATCTTTTATACAGTATGAT+AGG | + | chr3.3:69440078-69440097 | None:intergenic | 20.0% |
| !!! | TTTTCATAAGTTATCCTAAA+AGG | - | chr3.3:69438737-69438756 | MS.gene25694:intron | 20.0% |
| ! | AAGTGAATCCTATATGAAAA+AGG | + | chr3.3:69438602-69438621 | None:intergenic | 25.0% |
| ! | AAGTTACAAGTTACAAGATT+GGG | + | chr3.3:69438017-69438036 | None:intergenic | 25.0% |
| ! | AATTATAATACTATCCTGAG+TGG | + | chr3.3:69439039-69439058 | None:intergenic | 25.0% |
| ! | ACGATGAGTTAAAAATATTC+AGG | + | chr3.3:69439563-69439582 | None:intergenic | 25.0% |
| ! | AGTGAATCCTATATGAAAAA+GGG | + | chr3.3:69438601-69438620 | None:intergenic | 25.0% |
| ! | ATAATTCAATCAACAGTTAC+TGG | - | chr3.3:69439822-69439841 | MS.gene25694:intron | 25.0% |
| ! | ATATCATTGTAAACCCAAAA+TGG | + | chr3.3:69439980-69439999 | None:intergenic | 25.0% |
| ! | ATATTATAGCTAGCTAAGTT+TGG | + | chr3.3:69438877-69438896 | None:intergenic | 25.0% |
| ! | GTTTCTGAATGGTATATTAT+GGG | - | chr3.3:69438521-69438540 | MS.gene25694:intron | 25.0% |
| ! | TAAAATCAATGGACATAACA+TGG | + | chr3.3:69439937-69439956 | None:intergenic | 25.0% |
| ! | TGAGAGTAAAGTAAAATCAA+TGG | + | chr3.3:69439948-69439967 | None:intergenic | 25.0% |
| !! | CAATTTTACTCTTTCTCTTA+TGG | - | chr3.3:69438282-69438301 | MS.gene25694:CDS | 25.0% |
| !! | CTAGTTATAATAAGCCTTTT+AGG | + | chr3.3:69438754-69438773 | None:intergenic | 25.0% |
| !! | TAACATTCAACCATTGTTTT+AGG | - | chr3.3:69438995-69439014 | MS.gene25694:intron | 25.0% |
| !! | TGTTTCTGAATGGTATATTA+TGG | - | chr3.3:69438520-69438539 | MS.gene25694:intron | 25.0% |
| !!! | AACATGGCCATTAAATTTTT+TGG | - | chr3.3:69439368-69439387 | MS.gene25694:intron | 25.0% |
| !!! | AACATTCAACCATTGTTTTA+GGG | - | chr3.3:69438996-69439015 | MS.gene25694:intron | 25.0% |
| !!! | ATTTTTTGTATTTCAGAGTG+GGG | + | chr3.3:69438040-69438059 | None:intergenic | 25.0% |
| !!! | GATTTTTTGTATTTCAGAGT+GGG | + | chr3.3:69438041-69438060 | None:intergenic | 25.0% |
| !!! | TGATTTTTTGTATTTCAGAG+TGG | + | chr3.3:69438042-69438061 | None:intergenic | 25.0% |
| !!! | TTATTAATTCTGAAATGCCA+GGG | + | chr3.3:69439098-69439117 | None:intergenic | 25.0% |
| AAAACTCTACAGAATGTAAG+AGG | + | chr3.3:69439067-69439086 | None:intergenic | 30.0% | |
| AACAACATTGTTTACATAGC+AGG | + | chr3.3:69439167-69439186 | None:intergenic | 30.0% | |
| AAGAAACACAGCTTAAAACA+TGG | - | chr3.3:69439352-69439371 | MS.gene25694:intron | 30.0% | |
| AATCAGATATTACTTGCTTC+GGG | - | chr3.3:69439608-69439627 | MS.gene25694:intron | 30.0% | |
| AATGGTATATTATGGGTTTG+TGG | - | chr3.3:69438528-69438547 | MS.gene25694:CDS | 30.0% | |
| AATGGTTGAATGTTACATCT+TGG | + | chr3.3:69438990-69439009 | None:intergenic | 30.0% | |
| ACAACATTGTTTACATAGCA+GGG | + | chr3.3:69439166-69439185 | None:intergenic | 30.0% | |
| ACAACCTAGTTAGTTACATT+AGG | - | chr3.3:69439867-69439886 | MS.gene25694:intron | 30.0% | |
| ACAACTTTACAATGTTAGGT+TGG | + | chr3.3:69439428-69439447 | None:intergenic | 30.0% | |
| ATGAACAAAATCACCAATCA+TGG | + | chr3.3:69439485-69439504 | None:intergenic | 30.0% | |
| ATGATATGACTGCTAGAAAA+TGG | - | chr3.3:69439993-69440012 | MS.gene25694:CDS | 30.0% | |
| CAACTTTACAATGTTAGGTT+GGG | + | chr3.3:69439427-69439446 | None:intergenic | 30.0% | |
| CTTCTCTAATATTGTTACGA+TGG | - | chr3.3:69439793-69439812 | MS.gene25694:intron | 30.0% | |
| GAAGTTACAAGTTACAAGAT+TGG | + | chr3.3:69438018-69438037 | None:intergenic | 30.0% | |
| GAATCAGATATTACTTGCTT+CGG | - | chr3.3:69439607-69439626 | MS.gene25694:intron | 30.0% | |
| TAATATCTGATTCACAGATC+AGG | + | chr3.3:69439600-69439619 | None:intergenic | 30.0% | |
| TACAACAGGAGGTTATTATT+AGG | + | chr3.3:69439515-69439534 | None:intergenic | 30.0% | |
| TCAATATACAGGTTTGACAA+AGG | - | chr3.3:69440110-69440129 | MS.gene25694:CDS | 30.0% | |
| TGCAACAACTTTACAATGTT+AGG | + | chr3.3:69439432-69439451 | None:intergenic | 30.0% | |
| TTGAATTTGAAAGGAGATGA+TGG | - | chr3.3:69438476-69438495 | MS.gene25694:intron | 30.0% | |
| ! | AACTCAGCTTTTCATATTGT+TGG | - | chr3.3:69439722-69439741 | MS.gene25694:CDS | 30.0% |
| ! | AAGAATTTTTCCAGTACTTC+AGG | - | chr3.3:69439678-69439697 | MS.gene25694:CDS | 30.0% |
| ! | AGAATTTTTCCAGTACTTCA+GGG | - | chr3.3:69439679-69439698 | MS.gene25694:CDS | 30.0% |
| ! | ATAATTTACGCTAGTTTAGC+CGG | - | chr3.3:69439641-69439660 | MS.gene25694:intron | 30.0% |
| ! | GCTTTCATTTTCATTACTAG+AGG | + | chr3.3:69438128-69438147 | None:intergenic | 30.0% |
| ! | TTTTACTTTACTCTCAACAC+TGG | - | chr3.3:69439952-69439971 | MS.gene25694:CDS | 30.0% |
| !! | AGTTATTTCTGTAGTGAAAG+AGG | - | chr3.3:69438698-69438717 | MS.gene25694:intron | 30.0% |
| !! | ATTTTAGCAAGTTGCAGATT+TGG | + | chr3.3:69439893-69439912 | None:intergenic | 30.0% |
| !! | GGTATTTCCCTTTTTCATAT+AGG | - | chr3.3:69438591-69438610 | MS.gene25694:CDS | 30.0% |
| !! | GTTATTAATTCTGAAATGCC+AGG | + | chr3.3:69439099-69439118 | None:intergenic | 30.0% |
| !!! | TAGAGTTTTAACTTATACCC+TGG | - | chr3.3:69439078-69439097 | MS.gene25694:intron | 30.0% |
| !!! | TGACGATTTAGTTTTTGCAT+TGG | - | chr3.3:69439200-69439219 | MS.gene25694:intron | 30.0% |
| !!! | TTCTTCCTTATTTTGTGCTA+TGG | - | chr3.3:69439307-69439326 | MS.gene25694:intron | 30.0% |
| AAAAATGAAGCAGACAGGAA+GGG | + | chr3.3:69439270-69439289 | None:intergenic | 35.0% | |
| AACAGCATGCTATATACCAA+AGG | + | chr3.3:69438554-69438573 | None:intergenic | 35.0% | |
| AGCAATGGTATCAATGAAAC+TGG | + | chr3.3:69440149-69440168 | None:intergenic | 35.0% | |
| AGTAAGAATGTGACTACAAC+AGG | + | chr3.3:69439529-69439548 | None:intergenic | 35.0% | |
| AGTTTCATTGATACCATTGC+TGG | - | chr3.3:69440148-69440167 | MS.gene25694:CDS | 35.0% | |
| ATCAGATATTACTTGCTTCG+GGG | - | chr3.3:69439609-69439628 | MS.gene25694:intron | 35.0% | |
| CAACAACTCTGTTACAAAGA+TGG | + | chr3.3:69438658-69438677 | None:intergenic | 35.0% | |
| CTGCTTTATACATTCTCCTA+CGG | - | chr3.3:69440174-69440193 | MS.gene25694:CDS | 35.0% | |
| GAAAGCAACAATAACAGTAG+TGG | - | chr3.3:69438067-69438086 | MS.gene25694:CDS | 35.0% | |
| GGTTTCCATAGCACAAAATA+AGG | + | chr3.3:69439315-69439334 | None:intergenic | 35.0% | |
| GTAATGCTCGTTCAATATAC+AGG | - | chr3.3:69440099-69440118 | MS.gene25694:CDS | 35.0% | |
| GTTTCATTGATACCATTGCT+GGG | - | chr3.3:69440149-69440168 | MS.gene25694:CDS | 35.0% | |
| TAACTAGGTTGTAGTAGACT+AGG | + | chr3.3:69439859-69439878 | None:intergenic | 35.0% | |
| TAGTATATATTACCGGTGTC+TGG | + | chr3.3:69438346-69438365 | None:intergenic | 35.0% | |
| TATACAGTATGATAGGGACT+AGG | + | chr3.3:69440071-69440090 | None:intergenic | 35.0% | |
| TTAAGCTGTGTTTCTTCAAC+AGG | + | chr3.3:69439348-69439367 | None:intergenic | 35.0% | |
| TTGAACTGACCCTAAAACAA+TGG | + | chr3.3:69439008-69439027 | None:intergenic | 35.0% | |
| TTGGCCTAATGTAACTAACT+AGG | + | chr3.3:69439874-69439893 | None:intergenic | 35.0% | |
| TTTCATTGATACCATTGCTG+GGG | - | chr3.3:69440150-69440169 | MS.gene25694:CDS | 35.0% | |
| ! | TAATTTACGCTAGTTTAGCC+GGG | - | chr3.3:69439642-69439661 | MS.gene25694:intron | 35.0% |
| !! | ATCAAGTGCTTGTTTCTGAA+TGG | - | chr3.3:69438510-69438529 | MS.gene25694:intron | 35.0% |
| !! | ATCTGCAACTTGCTAAAATC+TGG | - | chr3.3:69439894-69439913 | MS.gene25694:CDS | 35.0% |
| !! | TTCCTGTCTGCTTCATTTTT+CGG | - | chr3.3:69439270-69439289 | MS.gene25694:intron | 35.0% |
| AAGAATGTGACTACAACAGG+AGG | + | chr3.3:69439526-69439545 | None:intergenic | 40.0% | |
| AATGATTCTGTCTGTAGTCG+AGG | - | chr3.3:69438429-69438448 | MS.gene25694:intron | 40.0% | |
| ACAGGTTTGACAAAGGTTCT+TGG | - | chr3.3:69440117-69440136 | MS.gene25694:CDS | 40.0% | |
| ACCAATGTGATCGAAACGAA+GGG | + | chr3.3:69438926-69438945 | None:intergenic | 40.0% | |
| AGGAGGAAGGAAAAAGAGAT+TGG | - | chr3.3:69438252-69438271 | MS.gene25694:CDS | 40.0% | |
| ATATTACTTGCTTCGGGGAT+AGG | - | chr3.3:69439614-69439633 | MS.gene25694:intron | 40.0% | |
| ATGATTCTGTCTGTAGTCGA+GGG | - | chr3.3:69438430-69438449 | MS.gene25694:intron | 40.0% | |
| ATTCCCACAAAGCTCAAAGT+AGG | + | chr3.3:69439127-69439146 | None:intergenic | 40.0% | |
| ATTTGCTTTCCCTGAAGTAC+TGG | + | chr3.3:69439691-69439710 | None:intergenic | 40.0% | |
| CAAAAAGCAGTGTTCCTGTA+TGG | - | chr3.3:69439244-69439263 | MS.gene25694:intron | 40.0% | |
| CATTGTTTACATAGCAGGGT+CGG | + | chr3.3:69439162-69439181 | None:intergenic | 40.0% | |
| CGTAGGAGAATGTATAAAGC+AGG | + | chr3.3:69440176-69440195 | None:intergenic | 40.0% | |
| GAAAAATGAAGCAGACAGGA+AGG | + | chr3.3:69439271-69439290 | None:intergenic | 40.0% | |
| GGTAACTTGACTCTCTTTGT+TGG | + | chr3.3:69438213-69438232 | None:intergenic | 40.0% | |
| GTTCAATAGAGTTTCCACTC+AGG | - | chr3.3:69439022-69439041 | MS.gene25694:intron | 40.0% | |
| TAATCTGCAACAACATCCAG+AGG | + | chr3.3:69438093-69438112 | None:intergenic | 40.0% | |
| TACCAATGTGATCGAAACGA+AGG | + | chr3.3:69438927-69438946 | None:intergenic | 40.0% | |
| TATATTACCGGTGTCTGGTT+TGG | + | chr3.3:69438341-69438360 | None:intergenic | 40.0% | |
| TATTATGGGTTTGTGGCCTT+TGG | - | chr3.3:69438535-69438554 | MS.gene25694:CDS | 40.0% | |
| TCAATCAACAGTTACTGGAC+TGG | - | chr3.3:69439827-69439846 | MS.gene25694:intron | 40.0% | |
| TTGCTGCTACACCATCATTT+CGG | - | chr3.3:69438156-69438175 | MS.gene25694:intron | 40.0% | |
| ! | AATTTACGCTAGTTTAGCCG+GGG | - | chr3.3:69439643-69439662 | MS.gene25694:intron | 40.0% |
| ! | AGCTTTTCATATTGTTGGCC+TGG | - | chr3.3:69439727-69439746 | MS.gene25694:CDS | 40.0% |
| ! | ATATTACCGGTGTCTGGTTT+GGG | + | chr3.3:69438340-69438359 | None:intergenic | 40.0% |
| ! | TTGCCTACTTTGAGCTTTGT+GGG | - | chr3.3:69439121-69439140 | MS.gene25694:intron | 40.0% |
| AATGAATACAAGGACGAGCC+AGG | + | chr3.3:69439748-69439767 | None:intergenic | 45.0% | |
| AATGTGATCGAAACGAAGGG+TGG | + | chr3.3:69438923-69438942 | None:intergenic | 45.0% | |
| ACAATAACAGTAGTGGCCTC+TGG | - | chr3.3:69438074-69438093 | MS.gene25694:CDS | 45.0% | |
| ACCCTTCGTTTCGATCACAT+TGG | - | chr3.3:69438922-69438941 | MS.gene25694:CDS | 45.0% | |
| AGCTGTGTTTCTTCAACAGG+AGG | + | chr3.3:69439345-69439364 | None:intergenic | 45.0% | |
| AGGGAAATACCTTCTTCCAG+TGG | + | chr3.3:69438582-69438601 | None:intergenic | 45.0% | |
| CACCGAAAAATGAAGCAGAC+AGG | + | chr3.3:69439275-69439294 | None:intergenic | 45.0% | |
| CTACTCTTCCTCCGAAATGA+TGG | + | chr3.3:69438170-69438189 | None:intergenic | 45.0% | |
| CTCAACAGGAGTTTGTGCAA+TGG | + | chr3.3:69440219-69440238 | None:intergenic | 45.0% | |
| CTTGCCTACTTTGAGCTTTG+TGG | - | chr3.3:69439120-69439139 | MS.gene25694:intron | 45.0% | |
| GGAATCGAAAGTCACTGCAA+CGG | - | chr3.3:69439389-69439408 | MS.gene25694:intron | 45.0% | |
| GGGAAATACCTTCTTCCAGT+GGG | + | chr3.3:69438581-69438600 | None:intergenic | 45.0% | |
| TACCAACAACAGCAGTGTTG+TGG | - | chr3.3:69438229-69438248 | MS.gene25694:CDS | 45.0% | |
| TGTGTTTCTTCAACAGGAGG+CGG | + | chr3.3:69439342-69439361 | None:intergenic | 45.0% | |
| TTCTTTCCACACATCTTCCC+CGG | + | chr3.3:69439663-69439682 | None:intergenic | 45.0% | |
| ! | CTCAACACTGGCACCATTTT+GGG | - | chr3.3:69439964-69439983 | MS.gene25694:CDS | 45.0% |
| ! | TATTACCGGTGTCTGGTTTG+GGG | + | chr3.3:69438339-69438358 | None:intergenic | 45.0% |
| ! | TCTCAACACTGGCACCATTT+TGG | - | chr3.3:69439963-69439982 | MS.gene25694:CDS | 45.0% |
| ! | TGTTACTTCCCACTGGAAGA+AGG | - | chr3.3:69438570-69438589 | MS.gene25694:CDS | 45.0% |
| !! | AATGGCAGAGGTTGATAGTG+AGG | + | chr3.3:69440201-69440220 | None:intergenic | 45.0% |
| !! | ATGGCAGAGGTTGATAGTGA+GGG | + | chr3.3:69440200-69440219 | None:intergenic | 45.0% |
| !! | CTGTCTGCTTCATTTTTCGG+TGG | - | chr3.3:69439273-69439292 | MS.gene25694:intron | 45.0% |
| !!! | GAACACTGCTTTTTGAGCTG+TGG | + | chr3.3:69439239-69439258 | None:intergenic | 45.0% |
| AGGAGTTTGTGCAATGGCAG+AGG | + | chr3.3:69440213-69440232 | None:intergenic | 50.0% | |
| CAACAACAGCAGTGTTGTGG+AGG | - | chr3.3:69438232-69438251 | MS.gene25694:CDS | 50.0% | |
| CTCCACAACACTGCTGTTGT+TGG | + | chr3.3:69438234-69438253 | None:intergenic | 50.0% | |
| CTGCTACACCATCATTTCGG+AGG | - | chr3.3:69438159-69438178 | MS.gene25694:intron | 50.0% | |
| GATGGTGTAGCAGCAACAGA+GGG | + | chr3.3:69438152-69438171 | None:intergenic | 50.0% | |
| TATAAAGCAGGCCCCAGCAA+TGG | + | chr3.3:69440164-69440183 | None:intergenic | 50.0% | |
| ! | AGCATGCTGTTACTTCCCAC+TGG | - | chr3.3:69438563-69438582 | MS.gene25694:CDS | 50.0% |
| ! | TGATGGTGTAGCAGCAACAG+AGG | + | chr3.3:69438153-69438172 | None:intergenic | 50.0% |
| ACGAAGGGTGGCATCATGCA+TGG | + | chr3.3:69438911-69438930 | None:intergenic | 55.0% | |
| AGCAGTGTTGTGGAGGAGGA+AGG | - | chr3.3:69438239-69438258 | MS.gene25694:CDS | 55.0% | |
| CAACAGCAGTGTTGTGGAGG+AGG | - | chr3.3:69438235-69438254 | MS.gene25694:CDS | 55.0% | |
| GTTTAGCCGGGGAAGATGTG+TGG | - | chr3.3:69439654-69439673 | MS.gene25694:CDS | 55.0% | |
| GTTTCTTCAACAGGAGGCGG+TGG | + | chr3.3:69439339-69439358 | None:intergenic | 55.0% | |
| TCTCTCCCCAAACCAGACAC+CGG | - | chr3.3:69438331-69438350 | MS.gene25694:intron | 55.0% | |
| !! | AGGTTGATAGTGAGGGCCGT+AGG | + | chr3.3:69440193-69440212 | None:intergenic | 55.0% |
| GCAGACAGGAAGGGCCATAC+AGG | + | chr3.3:69439261-69439280 | None:intergenic | 60.0% | |
| TCTTCAACAGGAGGCGGTGG+AGG | + | chr3.3:69439336-69439355 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69437993 | 69440247 | 69437993 | ID=MS.gene25694 |
| chr3.3 | mRNA | 69437993 | 69440247 | 69437993 | ID=MS.gene25694.t1;Parent=MS.gene25694 |
| chr3.3 | exon | 69439888 | 69440247 | 69439888 | ID=MS.gene25694.t1.exon1;Parent=MS.gene25694.t1 |
| chr3.3 | CDS | 69439888 | 69440247 | 69439888 | ID=cds.MS.gene25694.t1;Parent=MS.gene25694.t1 |
| chr3.3 | exon | 69439649 | 69439794 | 69439649 | ID=MS.gene25694.t1.exon2;Parent=MS.gene25694.t1 |
| chr3.3 | CDS | 69439649 | 69439794 | 69439649 | ID=cds.MS.gene25694.t1;Parent=MS.gene25694.t1 |
| chr3.3 | exon | 69438830 | 69438998 | 69438830 | ID=MS.gene25694.t1.exon3;Parent=MS.gene25694.t1 |
| chr3.3 | CDS | 69438830 | 69438998 | 69438830 | ID=cds.MS.gene25694.t1;Parent=MS.gene25694.t1 |
| chr3.3 | exon | 69438528 | 69438626 | 69438528 | ID=MS.gene25694.t1.exon4;Parent=MS.gene25694.t1 |
| chr3.3 | CDS | 69438528 | 69438626 | 69438528 | ID=cds.MS.gene25694.t1;Parent=MS.gene25694.t1 |
| chr3.3 | exon | 69438226 | 69438308 | 69438226 | ID=MS.gene25694.t1.exon5;Parent=MS.gene25694.t1 |
| chr3.3 | CDS | 69438226 | 69438308 | 69438226 | ID=cds.MS.gene25694.t1;Parent=MS.gene25694.t1 |
| chr3.3 | exon | 69437993 | 69438119 | 69437993 | ID=MS.gene25694.t1.exon6;Parent=MS.gene25694.t1 |
| chr3.3 | CDS | 69437993 | 69438119 | 69437993 | ID=cds.MS.gene25694.t1;Parent=MS.gene25694.t1 |
| Gene Sequence |
| Protein sequence |
