AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05100.t1 MTR_3g062930 94.393 214 9 1 1 211 1 214 9.43e-141 392
MS.gene05100.t1 MTR_3g095900 44.144 111 62 0 101 211 3 113 1.19e-28 105
MS.gene05100.t1 MTR_8g103900 44.144 111 62 0 101 211 3 113 2.22e-28 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05100.t1 AT3G54210 70.616 211 52 5 7 211 5 211 8.47e-96 278
MS.gene05100.t1 AT5G09770 45.946 111 60 0 101 211 3 113 2.30e-29 107
MS.gene05100.t1 AT5G64650 45.045 111 61 0 101 211 3 113 8.10e-29 106

Find 76 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGATGCGGCCATATTTA+AGG 0.201236 3.4:+65236559 None:intergenic
GGAAGTAGGGATTGGGATTT+GGG 0.206121 3.4:+65237718 None:intergenic
GGGAAGTAGGGATTGGGATT+TGG 0.214226 3.4:+65237717 None:intergenic
TTTCTTTCGCCGTAACGTTC+TGG 0.272629 3.4:+65236393 None:intergenic
GGGCAAGAGCCAGTGCTATT+AGG 0.311839 3.4:-65236530 MS.gene05100:CDS
AAGATGGTTCTCTACATAAA+AGG 0.312212 3.4:-65236476 MS.gene05100:CDS
GGTGGTGGTGGTAGAGTTGT+TGG 0.356580 3.4:+65237852 None:intergenic
ACAACACAGCTCCTTAAATA+TGG 0.358835 3.4:-65236570 MS.gene05100:CDS
GGGATTTGGGTCTGGAGATT+CGG 0.381294 3.4:+65237731 None:intergenic
ATGAGTGCCTTACGCTGATC+AGG 0.383798 3.4:+65236603 None:intergenic
CATTATCACCCCGCCTTGGT+AGG 0.385376 3.4:+65236343 None:intergenic
TAGGGATTGGGATTTGGGTC+TGG 0.393604 3.4:+65237723 None:intergenic
CCTGATGGAGGAGCGAAGAT+TGG 0.401689 3.4:+65237670 None:intergenic
AATGGCGAACGTGGCAGTTA+TGG 0.410731 3.4:-65237884 MS.gene05100:CDS
TCGACCACCATTGTCAATAA+TGG 0.413683 3.4:+65236674 None:intergenic
GAACGTTACGGCGAAAGAAA+TGG 0.422924 3.4:-65236390 MS.gene05100:CDS
CCAATCTTCGCTCCTCCATC+AGG 0.435435 3.4:-65237670 MS.gene05100:intron
ATTTAAGGAGCTGTGTTGTC+AGG 0.436346 3.4:+65236574 None:intergenic
GGAAAGTGCCCAAACTCAAC+AGG 0.448717 3.4:-65236629 MS.gene05100:CDS
ATTCCATCTGCTGGTGGTGG+TGG 0.460140 3.4:+65237840 None:intergenic
AATAGCACTGGCTCTTGCCC+TGG 0.463988 3.4:+65236533 None:intergenic
GCGGAAGTAGGAGGAATTGA+AGG 0.464667 3.4:+65237793 None:intergenic
TATAAGAACCCTACCAAGGC+GGG 0.471140 3.4:-65236352 MS.gene05100:CDS
CTGATGGAGGAGCGAAGATT+GGG 0.477070 3.4:+65237671 None:intergenic
TCCCTACTTCCCTCCTTCAC+CGG 0.486907 3.4:-65237706 MS.gene05100:CDS
GAAGGAGGGAAGTAGGGATT+GGG 0.487973 3.4:+65237711 None:intergenic
GATTGGGAGAGGACGAAGTC+CGG 0.490357 3.4:+65237687 None:intergenic
ATGATCACTCTTGCAAAAGA+TGG 0.491383 3.4:-65236492 MS.gene05100:CDS
TGAGTGCCTTACGCTGATCA+GGG 0.494134 3.4:+65236604 None:intergenic
GGTGGTAGAGTTGTTGGTGG+AGG 0.495619 3.4:+65237858 None:intergenic
GTCCGGTGAAGGAGGGAAGT+AGG 0.501167 3.4:+65237704 None:intergenic
AGTAGGAGGAATTGAAGGTA+AGG 0.505266 3.4:+65237798 None:intergenic
TGAAGGAGGGAAGTAGGGAT+TGG 0.507962 3.4:+65237710 None:intergenic
GCGGGGTGATAATGCACCTA+TGG 0.509687 3.4:-65236334 MS.gene05100:CDS
GCAGAGGTTCCAGAACGTTA+CGG 0.513766 3.4:-65236402 MS.gene05100:CDS
TCCGGTGAAGGAGGGAAGTA+GGG 0.518649 3.4:+65237705 None:intergenic
CTGGAGATTCGGAGTGTGGT+TGG 0.520009 3.4:+65237742 None:intergenic
AGAAGACATATTCCATCTGC+TGG 0.523830 3.4:+65237831 None:intergenic
GGTGGTGGTAGAGTTGTTGG+TGG 0.535414 3.4:+65237855 None:intergenic
CGAGTCTATGCTATGAGACA+TGG 0.549900 3.4:-65236654 MS.gene05100:CDS
ATTATCACCCCGCCTTGGTA+GGG 0.549919 3.4:+65236344 None:intergenic
AGGACGAAGTCCGGTGAAGG+AGG 0.552388 3.4:+65237696 None:intergenic
CGCAATGAAGAAGCGGAAGT+AGG 0.554403 3.4:+65237781 None:intergenic
TGTTCATGCTTTATTTGCAG+AGG 0.556642 3.4:-65236418 MS.gene05100:CDS
AACATACTTCCTAATAGCAC+TGG 0.557258 3.4:+65236521 None:intergenic
AGCACTGGCTCTTGCCCTGG+TGG 0.560135 3.4:+65236536 None:intergenic
GGAGCTGTGTTGTCAGGCCA+CGG 0.563341 3.4:+65236580 None:intergenic
AGTTTCACCATTATTGACAA+TGG 0.570374 3.4:-65236681 MS.gene05100:CDS
CTACCACCACCACCAGCAGA+TGG 0.573739 3.4:-65237843 MS.gene05100:CDS
GGGTCTGGAGATTCGGAGTG+TGG 0.581192 3.4:+65237738 None:intergenic
CATATTCCATCTGCTGGTGG+TGG 0.588060 3.4:+65237837 None:intergenic
GGAGGAGCGAAGATTGGGAG+AGG 0.593002 3.4:+65237676 None:intergenic
ACAAGTTCAATGTATGCCAT+AGG 0.593731 3.4:+65236318 None:intergenic
GGACGAAGTCCGGTGAAGGA+GGG 0.596255 3.4:+65237697 None:intergenic
GAGTGCCTTACGCTGATCAG+GGG 0.597909 3.4:+65236605 None:intergenic
TTCACCATTATTGACAATGG+TGG 0.599206 3.4:-65236678 MS.gene05100:CDS
TCAAGCAACAATGGCGAACG+TGG 0.602438 3.4:-65237893 None:intergenic
ATGGCCGCATCAAGACCACC+AGG 0.604923 3.4:-65236551 MS.gene05100:CDS
GCTTCTCATAGATGAAGCCA+AGG 0.606561 3.4:+65236445 None:intergenic
GGTGCATTATCACCCCGCCT+TGG 0.608519 3.4:+65236339 None:intergenic
GAGAGGACGAAGTCCGGTGA+AGG 0.613847 3.4:+65237693 None:intergenic
AATGAAGAAGCGGAAGTAGG+AGG 0.624583 3.4:+65237784 None:intergenic
CATAAAAGGAGACAAGCCCT+TGG 0.625171 3.4:-65236462 MS.gene05100:CDS
TTGCCCTGGTGGTCTTGATG+CGG 0.630759 3.4:+65236547 None:intergenic
AGTGAAGCGCAATGAAGAAG+CGG 0.636897 3.4:+65237774 None:intergenic
CAGCGTAAGGCACTCATCCG+TGG 0.643797 3.4:-65236597 MS.gene05100:CDS
AGTGCCTTACGCTGATCAGG+GGG 0.654716 3.4:+65236606 None:intergenic
AGACATATTCCATCTGCTGG+TGG 0.656629 3.4:+65237834 None:intergenic
CGTTACGGCGAAAGAAATGG+TGG 0.664215 3.4:-65236387 MS.gene05100:CDS
CTTCTCATAGATGAAGCCAA+GGG 0.669074 3.4:+65236446 None:intergenic
ATAAGAACCCTACCAAGGCG+GGG 0.673186 3.4:-65236351 MS.gene05100:CDS
AATGAAGGTATACCTGATGG+AGG 0.679743 3.4:+65237658 None:intergenic
GAATTATAAGAACCCTACCA+AGG 0.696668 3.4:-65236356 MS.gene05100:CDS
TCTATGCTATGAGACATGGA+AGG 0.721858 3.4:-65236650 MS.gene05100:CDS
TTATAAGAACCCTACCAAGG+CGG 0.735151 3.4:-65236353 MS.gene05100:CDS
TGGCCGCATCAAGACCACCA+GGG 0.750384 3.4:-65236550 MS.gene05100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATGCATTTGTTTTAT+GGG - chr3.4:65236598-65236617 MS.gene05100:CDS 15.0%
!! TAGATAATAATTACGTTTAC+AGG - chr3.4:65236792-65236811 MS.gene05100:intron 20.0%
!!! AATTATGCATTTGTTTTATG+GGG - chr3.4:65236599-65236618 MS.gene05100:CDS 20.0%
!!! GAAATTATGCATTTGTTTTA+TGG - chr3.4:65236597-65236616 MS.gene05100:CDS 20.0%
! AGTATAACTGGATTGAATTT+CGG + chr3.4:65237191-65237210 None:intergenic 25.0%
! AGTTATTGAAGTAGTATAAC+TGG + chr3.4:65237203-65237222 None:intergenic 25.0%
! ATAGTTCTCACCTTAAAATT+CGG - chr3.4:65236961-65236980 MS.gene05100:intron 25.0%
! CAAGATGATTCTTAAAATTC+GGG + chr3.4:65237012-65237031 None:intergenic 25.0%
! CCAAGATGATTCTTAAAATT+CGG + chr3.4:65237013-65237032 None:intergenic 25.0%
!! TTTTGTATCAGCTAGAAATA+CGG - chr3.4:65236913-65236932 MS.gene05100:intron 25.0%
!!! TTTTGTTTACTAGTAGCTTT+TGG - chr3.4:65236673-65236692 MS.gene05100:CDS 25.0%
AACTTGAACCAAGTAAAATG+AGG + chr3.4:65237346-65237365 None:intergenic 30.0%
AAGATGGTTCTCTACATAAA+AGG - chr3.4:65237721-65237740 MS.gene05100:CDS 30.0%
AAGTAAGGCATAGTGTTTAT+GGG + chr3.4:65237144-65237163 None:intergenic 30.0%
AGTTTCACCATTATTGACAA+TGG - chr3.4:65237516-65237535 MS.gene05100:intron 30.0%
ATGCAATGGAAATGAAATGA+AGG + chr3.4:65236557-65236576 None:intergenic 30.0%
TGCTGAATTTCAAGAGATAA+TGG + chr3.4:65237449-65237468 None:intergenic 30.0%
TTAAAGAGTCTCTTATGCAA+TGG + chr3.4:65236571-65236590 None:intergenic 30.0%
TTATAAACCAGAAATCCTAG+AGG + chr3.4:65237066-65237085 None:intergenic 30.0%
TTGACACAAGTAATAATCTG+AGG + chr3.4:65236757-65236776 None:intergenic 30.0%
! CATCAATACCTCATTTTACT+TGG - chr3.4:65237335-65237354 MS.gene05100:intron 30.0%
!! ACCTTAAAATTCGGTTTTGT+CGG - chr3.4:65236970-65236989 MS.gene05100:intron 30.0%
!! AGGATTTCTGGTTTATAACA+TGG - chr3.4:65237068-65237087 MS.gene05100:intron 30.0%
!! CAAGAGATAATGGATACTAT+GGG + chr3.4:65237439-65237458 None:intergenic 30.0%
!! CAAGTAAAATGAGGTATTGA+TGG + chr3.4:65237337-65237356 None:intergenic 30.0%
!! CCGAATTTTAAGAATCATCT+TGG - chr3.4:65237010-65237029 MS.gene05100:intron 30.0%
!! TCAAGAGATAATGGATACTA+TGG + chr3.4:65237440-65237459 None:intergenic 30.0%
!!! CATTTGTTTTATGGGGAAAT+TGG - chr3.4:65236606-65236625 MS.gene05100:CDS 30.0%
AACATACTTCCTAATAGCAC+TGG + chr3.4:65237679-65237698 None:intergenic 35.0%
ACAACACAGCTCCTTAAATA+TGG - chr3.4:65237627-65237646 MS.gene05100:intron 35.0%
ACAAGTTCAATGTATGCCAT+AGG + chr3.4:65237882-65237901 None:intergenic 35.0%
ATAACTGGATTGAATTTCGG+TGG + chr3.4:65237188-65237207 None:intergenic 35.0%
ATCAGCTAGAAATACGGTAT+AGG - chr3.4:65236919-65236938 MS.gene05100:intron 35.0%
ATCTATAGCGAGGACAAATT+CGG + chr3.4:65236866-65236885 None:intergenic 35.0%
ATGATCACTCTTGCAAAAGA+TGG - chr3.4:65237705-65237724 MS.gene05100:CDS 35.0%
GAAGTAAGGCATAGTGTTTA+TGG + chr3.4:65237145-65237164 None:intergenic 35.0%
GAATTATAAGAACCCTACCA+AGG - chr3.4:65237841-65237860 MS.gene05100:CDS 35.0%
TGTGATCAAATTCTGCTCAA+AGG + chr3.4:65237497-65237516 None:intergenic 35.0%
TTCACCATTATTGACAATGG+TGG - chr3.4:65237519-65237538 MS.gene05100:intron 35.0%
! TCCGACAAAACCGAATTTTA+AGG + chr3.4:65236974-65236993 None:intergenic 35.0%
! TGAAATGAAGGTATACCTGA+TGG + chr3.4:65236545-65236564 None:intergenic 35.0%
!! CAGATCAAAGGTGTTATCAT+AGG - chr3.4:65237282-65237301 MS.gene05100:intron 35.0%
!! TGTTCATGCTTTATTTGCAG+AGG - chr3.4:65237779-65237798 MS.gene05100:CDS 35.0%
AGAACTTTCTGCTACTGGAA+TGG - chr3.4:65237259-65237278 MS.gene05100:intron 40.0%
AGAAGACATATTCCATCTGC+TGG + chr3.4:65236369-65236388 None:intergenic 40.0%
AGTAGGAGGAATTGAAGGTA+AGG + chr3.4:65236402-65236421 None:intergenic 40.0%
ATCTATGTCACTGACGCATA+TGG - chr3.4:65236710-65236729 MS.gene05100:intron 40.0%
ATTTAAGGAGCTGTGTTGTC+AGG + chr3.4:65237626-65237645 None:intergenic 40.0%
CTTCTCATAGATGAAGCCAA+GGG + chr3.4:65237754-65237773 None:intergenic 40.0%
TCGACCACCATTGTCAATAA+TGG + chr3.4:65237526-65237545 None:intergenic 40.0%
TCTATAGCGAGGACAAATTC+GGG + chr3.4:65236865-65236884 None:intergenic 40.0%
TCTATGCTATGAGACATGGA+AGG - chr3.4:65237547-65237566 MS.gene05100:intron 40.0%
TCTTGATGCGGCCATATTTA+AGG + chr3.4:65237641-65237660 None:intergenic 40.0%
TGAGAAGAACTTTCTGCTAC+TGG - chr3.4:65237254-65237273 MS.gene05100:intron 40.0%
TTATAAGAACCCTACCAAGG+CGG - chr3.4:65237844-65237863 MS.gene05100:CDS 40.0%
! AATGAAGGTATACCTGATGG+AGG + chr3.4:65236542-65236561 None:intergenic 40.0%
! AGTGATTGGTTAGGGAAGTA+AGG + chr3.4:65237159-65237178 None:intergenic 40.0%
AAACACATCCACTCATGCTC+AGG + chr3.4:65236896-65236915 None:intergenic 45.0%
AATGAAGAAGCGGAAGTAGG+AGG + chr3.4:65236416-65236435 None:intergenic 45.0%
AGACATATTCCATCTGCTGG+TGG + chr3.4:65236366-65236385 None:intergenic 45.0%
AGGACTGAACATCTATAGCG+AGG + chr3.4:65236876-65236895 None:intergenic 45.0%
AGTGAAGCGCAATGAAGAAG+CGG + chr3.4:65236426-65236445 None:intergenic 45.0%
CATAAAAGGAGACAAGCCCT+TGG - chr3.4:65237735-65237754 MS.gene05100:CDS 45.0%
CGAGTCTATGCTATGAGACA+TGG - chr3.4:65237543-65237562 MS.gene05100:intron 45.0%
CTACTGGAATGGCAGATCAA+AGG - chr3.4:65237270-65237289 MS.gene05100:intron 45.0%
GAACGTTACGGCGAAAGAAA+TGG - chr3.4:65237807-65237826 MS.gene05100:CDS 45.0%
GAATCATCTTGGCACTCTTC+TGG - chr3.4:65237021-65237040 MS.gene05100:intron 45.0%
GCTTCTCATAGATGAAGCCA+AGG + chr3.4:65237755-65237774 None:intergenic 45.0%
GGAAGTAGGGATTGGGATTT+GGG + chr3.4:65236482-65236501 None:intergenic 45.0%
TATAAGAACCCTACCAAGGC+GGG - chr3.4:65237845-65237864 MS.gene05100:CDS 45.0%
TTTCTTTCGCCGTAACGTTC+TGG + chr3.4:65237807-65237826 None:intergenic 45.0%
! GGACGAGAAGTGATTGGTTA+GGG + chr3.4:65237167-65237186 None:intergenic 45.0%
! TCTCATTTTCCTGCACCTCT+AGG - chr3.4:65237048-65237067 MS.gene05100:intron 45.0%
! TGGACGAGAAGTGATTGGTT+AGG + chr3.4:65237168-65237187 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAACA+TGG - chr3.4:65237103-65237122 MS.gene05100:intron 5.0%
ATAAGAACCCTACCAAGGCG+GGG - chr3.4:65237846-65237865 MS.gene05100:CDS 50.0%
ATAGCGAGGACAAATTCGGG+TGG + chr3.4:65236862-65236881 None:intergenic 50.0%
ATGAGTGCCTTACGCTGATC+AGG + chr3.4:65237597-65237616 None:intergenic 50.0%
ATTATCACCCCGCCTTGGTA+GGG + chr3.4:65237856-65237875 None:intergenic 50.0%
CATATTCCATCTGCTGGTGG+TGG + chr3.4:65236363-65236382 None:intergenic 50.0%
CGCAATGAAGAAGCGGAAGT+AGG + chr3.4:65236419-65236438 None:intergenic 50.0%
CGTTACGGCGAAAGAAATGG+TGG - chr3.4:65237810-65237829 MS.gene05100:CDS 50.0%
CTGATGGAGGAGCGAAGATT+GGG + chr3.4:65236529-65236548 None:intergenic 50.0%
GAAGGAGGGAAGTAGGGATT+GGG + chr3.4:65236489-65236508 None:intergenic 50.0%
GCAGAGGTTCCAGAACGTTA+CGG - chr3.4:65237795-65237814 MS.gene05100:CDS 50.0%
GCGGAAGTAGGAGGAATTGA+AGG + chr3.4:65236407-65236426 None:intergenic 50.0%
GGGAAGTAGGGATTGGGATT+TGG + chr3.4:65236483-65236502 None:intergenic 50.0%
GGGATTTGGGTCTGGAGATT+CGG + chr3.4:65236469-65236488 None:intergenic 50.0%
TAGGGATTGGGATTTGGGTC+TGG + chr3.4:65236477-65236496 None:intergenic 50.0%
TGAAGGAGGGAAGTAGGGAT+TGG + chr3.4:65236490-65236509 None:intergenic 50.0%
TGAGTGCCTTACGCTGATCA+GGG + chr3.4:65237596-65237615 None:intergenic 50.0%
TGTTCAGTCCTGAGCATGAG+TGG - chr3.4:65236885-65236904 MS.gene05100:intron 50.0%
TTCGGTGGACGAGAAGTGAT+TGG + chr3.4:65237173-65237192 None:intergenic 50.0%
! ACCAGAAATCCTAGAGGTGC+AGG + chr3.4:65237060-65237079 None:intergenic 50.0%
!! GGAAAGTGCCCAAACTCAAC+AGG - chr3.4:65237568-65237587 MS.gene05100:intron 50.0%
!! TCCTGCACCTCTAGGATTTC+TGG - chr3.4:65237056-65237075 MS.gene05100:intron 50.0%
AGTGCCTTACGCTGATCAGG+GGG + chr3.4:65237594-65237613 None:intergenic 55.0%
ATCAGGGGGCCTGTTGAGTT+TGG + chr3.4:65237580-65237599 None:intergenic 55.0%
CATTATCACCCCGCCTTGGT+AGG + chr3.4:65237857-65237876 None:intergenic 55.0%
CCAATCTTCGCTCCTCCATC+AGG - chr3.4:65236527-65236546 MS.gene05100:CDS 55.0%
CCTGATGGAGGAGCGAAGAT+TGG + chr3.4:65236530-65236549 None:intergenic 55.0%
CTGGAGATTCGGAGTGTGGT+TGG + chr3.4:65236458-65236477 None:intergenic 55.0%
GAGTGCCTTACGCTGATCAG+GGG + chr3.4:65237595-65237614 None:intergenic 55.0%
GATTGGGAGAGGACGAAGTC+CGG + chr3.4:65236513-65236532 None:intergenic 55.0%
TCAGGGGGCCTGTTGAGTTT+GGG + chr3.4:65237579-65237598 None:intergenic 55.0%
TCCCTACTTCCCTCCTTCAC+CGG - chr3.4:65236491-65236510 MS.gene05100:CDS 55.0%
TCCGGTGAAGGAGGGAAGTA+GGG + chr3.4:65236495-65236514 None:intergenic 55.0%
! GCGGGGTGATAATGCACCTA+TGG - chr3.4:65237863-65237882 MS.gene05100:CDS 55.0%
! GGGCAAGAGCCAGTGCTATT+AGG - chr3.4:65237667-65237686 MS.gene05100:intron 55.0%
! GGTGGTAGAGTTGTTGGTGG+AGG + chr3.4:65236342-65236361 None:intergenic 55.0%
! GGTGGTGGTAGAGTTGTTGG+TGG + chr3.4:65236345-65236364 None:intergenic 55.0%
! TTGCCCTGGTGGTCTTGATG+CGG + chr3.4:65237653-65237672 None:intergenic 55.0%
!! AATAGCACTGGCTCTTGCCC+TGG + chr3.4:65237667-65237686 None:intergenic 55.0%
!! ATTCCATCTGCTGGTGGTGG+TGG + chr3.4:65236360-65236379 None:intergenic 55.0%
!! GGTGGTGGTGGTAGAGTTGT+TGG + chr3.4:65236348-65236367 None:intergenic 55.0%
AGGACGAAGTCCGGTGAAGG+AGG + chr3.4:65236504-65236523 None:intergenic 60.0%
ATGGCCGCATCAAGACCACC+AGG - chr3.4:65237646-65237665 MS.gene05100:intron 60.0%
CTACCACCACCACCAGCAGA+TGG - chr3.4:65236354-65236373 MS.gene05100:CDS 60.0%
GAGAGGACGAAGTCCGGTGA+AGG + chr3.4:65236507-65236526 None:intergenic 60.0%
GGACGAAGTCCGGTGAAGGA+GGG + chr3.4:65236503-65236522 None:intergenic 60.0%
GGAGCTGTGTTGTCAGGCCA+CGG + chr3.4:65237620-65237639 None:intergenic 60.0%
GGAGGAGCGAAGATTGGGAG+AGG + chr3.4:65236524-65236543 None:intergenic 60.0%
GGGTCTGGAGATTCGGAGTG+TGG + chr3.4:65236462-65236481 None:intergenic 60.0%
GGTGCATTATCACCCCGCCT+TGG + chr3.4:65237861-65237880 None:intergenic 60.0%
GTCCGGTGAAGGAGGGAAGT+AGG + chr3.4:65236496-65236515 None:intergenic 60.0%
TGGCCGCATCAAGACCACCA+GGG - chr3.4:65237647-65237666 MS.gene05100:intron 60.0%
! CAGCGTAAGGCACTCATCCG+TGG - chr3.4:65237600-65237619 MS.gene05100:intron 60.0%
CAGGCCCCCTGATCAGCGTA+AGG - chr3.4:65237587-65237606 MS.gene05100:intron 65.0%
!! AGCACTGGCTCTTGCCCTGG+TGG + chr3.4:65237664-65237683 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 65236314 65237905 65236314 ID=MS.gene05100
chr3.4 mRNA 65236314 65237905 65236314 ID=MS.gene05100.t1;Parent=MS.gene05100
chr3.4 exon 65237671 65237905 65237671 ID=MS.gene05100.t1.exon1;Parent=MS.gene05100.t1
chr3.4 CDS 65237671 65237905 65237671 ID=cds.MS.gene05100.t1;Parent=MS.gene05100.t1
chr3.4 exon 65236314 65236714 65236314 ID=MS.gene05100.t1.exon2;Parent=MS.gene05100.t1
chr3.4 CDS 65236314 65236714 65236314 ID=cds.MS.gene05100.t1;Parent=MS.gene05100.t1
Gene Sequence

>MS.gene05100

ATGGCGAACGTGGCAGTTATGGCTACCTCCACCAACAACTCTACCACCACCACCAGCAGATGGAATATGTCTTCTCTTCGCTCTGCCTTACCTTCAATTCCTCCTACTTCCGCTTCTTCATTGCGCTTCACTCGTTCTTCTCCAACCACACTCCGAATCTCCAGACCCAAATCCCAATCCCTACTTCCCTCCTTCACCGGACTTCGTCCTCTCCCAATCTTCGCTCCTCCATCAGGTATACCTTCATTTCATTTCCATTGCATAAGAGACTCTTTAATATCATGAAATTATGCATTTGTTTTATGGGGAAATTGGAATTCTATTATCACTTGTGTCAATCTATAAACATTGTTTACATTTTTTGTTTACTAGTAGCTTTTGGTATATGTTTAGTCTATCTATGTCACTGACGCATATGGTTACATTTAATTATTGTATTGCCTCAGATTATTACTTGTGTCAACGTGTCTGTGTTTTATAGATAATAATTACGTTTACAGGTCAATTAAATTCTATAAAATCTGCGTGTCGAGATGCTTGTTATTCCACCCGAATTTGTCCTCGCTATAGATGTTCAGTCCTGAGCATGAGTGGATGTGTTTTGTATCAGCTAGAAATACGGTATAGGTAGTACTTATAAAGCTCGAATAGTTCTCACCTTAAAATTCGGTTTTGTCGGATTGAGTTAGATTCAACCCGAATTTTAAGAATCATCTTGGCACTCTTCTGGCTTTTCTCATTTTCCTGCACCTCTAGGATTTCTGGTTTATAACATGGTATCATTTTGTCAAAAAAAAAAAAAAAAAACATGGTATCATAGAACTTGTCCCATAAACACTATGCCTTACTTCCCTAACCAATCACTTCTCGTCCACCGAAATTCAATCCAGTTATACTACTTCAATAACTTTTTCATACTAAAAATTATGACAAATTTTGATGAGAAGAACTTTCTGCTACTGGAATGGCAGATCAAAGGTGTTATCATAGGCTACAAAGTGCAAAATTTTGTTTTCTAATCCATCAATACCTCATTTTACTTGGTTCAAGTTGAGAATTGACTACTGTAACAAGTATGCTGTTATTGTTTCTTGCTTGTTTAGTGTGAATGAAATCTGCTTTCCCATAGTATCCATTATCTCTTGAAATTCAGCATTGAATTCACTACTAGAACTTAACTCCTTTGAGCAGAATTTGATCACAGTTTCACCATTATTGACAATGGTGGTCGAGTCTATGCTATGAGACATGGAAGGAAAGTGCCCAAACTCAACAGGCCCCCTGATCAGCGTAAGGCACTCATCCGTGGCCTGACAACACAGCTCCTTAAATATGGCCGCATCAAGACCACCAGGGCAAGAGCCAGTGCTATTAGGAAGTATGTTGATAAAATGATCACTCTTGCAAAAGATGGTTCTCTACATAAAAGGAGACAAGCCCTTGGCTTCATCTATGAGAAGCAGATTGTTCATGCTTTATTTGCAGAGGTTCCAGAACGTTACGGCGAAAGAAATGGTGGTTATACAAGAATTATAAGAACCCTACCAAGGCGGGGTGATAATGCACCTATGGCATACATTGAACTTGTGTAA

Protein sequence

>MS.gene05100.t1

MANVAVMATSTNNSTTTTSRWNMSSLRSALPSIPPTSASSLRFTRSSPTTLRISRPKSQSLLPSFTGLRPLPIFAPPSEFDHSFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV