Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26298.t1 | XP_003615974.1 | 97.1 | 993 | 29 | 0 | 1 | 993 | 1 | 993 | 0.00E+00 | 1780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26298.t1 | O24303 | 85.3 | 996 | 143 | 3 | 1 | 993 | 1 | 996 | 0.0e+00 | 1581.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26298.t1 | G7KFK1 | 97.1 | 993 | 29 | 0 | 1 | 993 | 1 | 993 | 0.0e+00 | 1780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene26298 | 0.832214 | 1.07E-55 | -1.69E-46 |
| MS.gene050226 | MS.gene26298 | 0.810416 | 1.17E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene26298 | 0.811728 | 6.05E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene26298 | 0.821447 | 4.02E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene26298 | 0.816254 | 6.08E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene26298 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene26298 | 0.819281 | 1.26E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene26298 | 0.824524 | 7.70E-54 | -1.69E-46 |
| MS.gene052600 | MS.gene26298 | 0.825296 | 5.07E-54 | -1.69E-46 |
| MS.gene053630 | MS.gene26298 | 0.805022 | 1.63E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene26298 | 0.846467 | 2.13E-59 | -1.69E-46 |
| MS.gene057060 | MS.gene26298 | 0.809408 | 1.92E-50 | -1.69E-46 |
| MS.gene057260 | MS.gene26298 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene057869 | MS.gene26298 | 0.819376 | 1.20E-52 | -1.69E-46 |
| MS.gene058833 | MS.gene26298 | 0.834903 | 2.29E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26298.t1 | MTR_5g074690 | 98.288 | 993 | 17 | 0 | 1 | 993 | 1 | 993 | 0.0 | 1988 |
| MS.gene26298.t1 | MTR_3g466170 | 73.420 | 997 | 248 | 6 | 1 | 993 | 1 | 984 | 0.0 | 1394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26298.t1 | AT1G06950 | 66.700 | 1009 | 315 | 7 | 1 | 993 | 13 | 1016 | 0.0 | 1341 |
Find 224 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCAGTCCTGTCCCTTTC+TGG | 0.165335 | 5.4:+59632862 | None:intergenic |
| AAGATTTGAAACTCCTTTAT+AGG | 0.204180 | 5.4:-59636447 | MS.gene26298:CDS |
| TATGTGTCAAATATTGTATT+TGG | 0.206419 | 5.4:-59638562 | MS.gene26298:CDS |
| GGTAAGCTGCAGACAGAAAT+AGG | 0.209457 | 5.4:-59632595 | MS.gene26298:CDS |
| GGCTCAATATGAAGCAAATT+AGG | 0.240776 | 5.4:-59632483 | MS.gene26298:CDS |
| TGCAGATTCTGCATTACTTT+TGG | 0.246840 | 5.4:+59633128 | None:intergenic |
| GGCGCGGTTGCGGCTGGATA+TGG | 0.249502 | 5.4:-59639722 | MS.gene26298:CDS |
| TTGACACATATATCAACTTT+TGG | 0.251955 | 5.4:+59638575 | None:intergenic |
| CCTGGTGGGGAGGAGCTTAA+AGG | 0.260189 | 5.4:-59638984 | MS.gene26298:CDS |
| GTCTTGCTGAGCAAGCTTTC+AGG | 0.264948 | 5.4:-59632678 | MS.gene26298:CDS |
| TAGAGAGCATGTAAGGAAAT+TGG | 0.270879 | 5.4:-59637509 | MS.gene26298:CDS |
| ATGTGTCAAATATTGTATTT+GGG | 0.277481 | 5.4:-59638561 | MS.gene26298:CDS |
| CTCCACTGCAGCTGCACTTC+GGG | 0.281808 | 5.4:-59631938 | MS.gene26298:CDS |
| ATCATCTTTAAGAGTAATTT+CGG | 0.288263 | 5.4:+59632888 | None:intergenic |
| AAGAAATAATGGATGTTCAT+AGG | 0.316350 | 5.4:-59632702 | MS.gene26298:CDS |
| ATTGGTTGAGGAAAATATTT+CGG | 0.317514 | 5.4:-59637491 | MS.gene26298:CDS |
| TTCTTCCCTCAACAACTTGC+TGG | 0.319849 | 5.4:-59632100 | MS.gene26298:CDS |
| AGATTTGAAACTCCTTTATA+GGG | 0.320836 | 5.4:-59636446 | MS.gene26298:CDS |
| TTCTTGACTTACTGTCTAAC+TGG | 0.328545 | 5.4:-59632829 | MS.gene26298:CDS |
| TGGATCACTCTTCAAGTATA+TGG | 0.340774 | 5.4:+59632008 | None:intergenic |
| ATGTTACAACAAAGGTTTAT+CGG | 0.352381 | 5.4:-59635316 | MS.gene26298:CDS |
| ACATCGGCTGTCATCGTTGC+CGG | 0.362250 | 5.4:-59639743 | MS.gene26298:CDS |
| CTGAAACATATGCCCTATAA+AGG | 0.363061 | 5.4:+59636434 | None:intergenic |
| AATGACTGGCAAAGAAATAA+TGG | 0.365011 | 5.4:-59632713 | MS.gene26298:CDS |
| ACTATCCAACTCGCTCATTC+AGG | 0.366476 | 5.4:-59632257 | MS.gene26298:CDS |
| GCAATTGGTGCAGGGGTTGA+TGG | 0.368876 | 5.4:-59633375 | MS.gene26298:CDS |
| TCAGGCAACGGCTTGAAGTT+GGG | 0.370852 | 5.4:-59638752 | MS.gene26298:CDS |
| GCTGTGGCTGTTGGTGTTGC+CGG | 0.372318 | 5.4:-59639653 | MS.gene26298:CDS |
| GAAGCAAATTAGGGAACTTA+AGG | 0.378789 | 5.4:-59632473 | MS.gene26298:CDS |
| GTTGCCGGCGCGGTTGCGGC+TGG | 0.379084 | 5.4:-59639728 | MS.gene26298:CDS |
| AAATCAGCTTGGTGGGATCC+TGG | 0.380180 | 5.4:-59632737 | MS.gene26298:CDS |
| ATATGTACACCAGCAGCATC+TGG | 0.388081 | 5.4:+59638909 | None:intergenic |
| TTGAGGAAATTGATGAAGAA+TGG | 0.392979 | 5.4:-59632984 | MS.gene26298:CDS |
| GCTCAATATGAAGCAAATTA+GGG | 0.397939 | 5.4:-59632482 | MS.gene26298:CDS |
| AATTTACCCACTAAAGAAAC+TGG | 0.401010 | 5.4:+59636599 | None:intergenic |
| CAAAGAACTTATAGAAAAGA+TGG | 0.406705 | 5.4:-59632926 | MS.gene26298:CDS |
| CATCATCTTTCCTTCTACCT+TGG | 0.408279 | 5.4:-59638534 | MS.gene26298:CDS |
| AGAAATAATGGATGTTCATA+GGG | 0.412819 | 5.4:-59632701 | MS.gene26298:CDS |
| TTTCAGTCCTGGAGTGAGCC+AGG | 0.413395 | 5.4:-59636717 | MS.gene26298:intron |
| GACGTCGTTGAGTGCGTAAA+GGG | 0.414432 | 5.4:+59639903 | None:intergenic |
| TTAAAGGCGACGAGGTTGAT+AGG | 0.417635 | 5.4:-59638968 | MS.gene26298:CDS |
| TTCAGGCAACGGCTTGAAGT+TGG | 0.420546 | 5.4:-59638753 | MS.gene26298:CDS |
| AGAGGAAATTATTGAAATTG+AGG | 0.427525 | 5.4:-59633001 | MS.gene26298:CDS |
| TGAGGAGCTTGACAAGGTAT+TGG | 0.428586 | 5.4:-59636690 | MS.gene26298:CDS |
| GGTGGGATCCTGGGAATGAC+TGG | 0.428723 | 5.4:-59632727 | MS.gene26298:CDS |
| GTCTCGTCTGCAGTATCTGT+TGG | 0.433411 | 5.4:-59631971 | MS.gene26298:CDS |
| TAGATTGTCAAGGATGCAAT+TGG | 0.433917 | 5.4:-59633390 | MS.gene26298:CDS |
| CATCGTTGCCGGCGCGGTTG+CGG | 0.439747 | 5.4:-59639732 | MS.gene26298:CDS |
| AAGTTGCGGCGGTTAATTTG+AGG | 0.440886 | 5.4:-59639592 | MS.gene26298:CDS |
| TGAGGAAATTGATGAAGAAT+GGG | 0.444758 | 5.4:-59632983 | MS.gene26298:CDS |
| TATGGTCTCGGTTCAAGATT+CGG | 0.445814 | 5.4:-59639704 | MS.gene26298:CDS |
| GAAAATATTTCGGTGGCACT+TGG | 0.448405 | 5.4:-59637481 | MS.gene26298:CDS |
| ATGGACAGTTGACGAAGGCC+AGG | 0.453747 | 5.4:-59632630 | MS.gene26298:CDS |
| GGGTGAGGGTAGTAAAATGG+AGG | 0.453994 | 5.4:+59639925 | None:intergenic |
| AACTGAAGAACCAGCGAAAG+AGG | 0.454382 | 5.4:-59633019 | MS.gene26298:CDS |
| TTCTGTGATTCCACCTGGTG+GGG | 0.456002 | 5.4:-59638997 | MS.gene26298:CDS |
| TGTTGGTCCAGTTTCTTTAG+TGG | 0.457220 | 5.4:-59636606 | MS.gene26298:CDS |
| ACTTGTTTAGAGAGCATGTA+AGG | 0.457297 | 5.4:-59637516 | MS.gene26298:CDS |
| GTCAAGGATGCAATTGGTGC+AGG | 0.458303 | 5.4:-59633384 | MS.gene26298:CDS |
| GATCGCCTTGCCCGTGGTGT+TGG | 0.459583 | 5.4:-59636623 | MS.gene26298:CDS |
| TTGAGTTACAGCTGTTTCAA+TGG | 0.460307 | 5.4:+59632510 | None:intergenic |
| TTCAAGTGGCGAGTTAGAAA+TGG | 0.464432 | 5.4:-59635273 | MS.gene26298:CDS |
| TCAATAATTTCCTCTTTCGC+TGG | 0.467556 | 5.4:+59633009 | None:intergenic |
| CTGTGGTAGTTTGTTTGAAA+AGG | 0.468731 | 5.4:-59634320 | MS.gene26298:intron |
| TTTCTGTGATTCCACCTGGT+GGG | 0.469503 | 5.4:-59638998 | MS.gene26298:CDS |
| GTTGGTCCAGTTTCTTTAGT+GGG | 0.470103 | 5.4:-59636605 | MS.gene26298:intron |
| CACATGGCTTGCGACTTACC+AGG | 0.471651 | 5.4:-59633314 | MS.gene26298:CDS |
| TCGAGACCGACGAGTTCCTT+CGG | 0.471906 | 5.4:+59639806 | None:intergenic |
| CAGGCAACGGCTTGAAGTTG+GGG | 0.474475 | 5.4:-59638751 | MS.gene26298:CDS |
| CGATGCTTCGAAATTGAAGA+AGG | 0.476839 | 5.4:-59639549 | MS.gene26298:CDS |
| CATCTCATTTAAGAATCATT+CGG | 0.477184 | 5.4:-59636651 | MS.gene26298:CDS |
| TAAGAAGAGTTAAGCGTGGA+AGG | 0.481453 | 5.4:+59639956 | None:intergenic |
| GTAAGCTGCAGACAGAAATA+GGG | 0.486795 | 5.4:-59632594 | MS.gene26298:CDS |
| AGATGCTGCTGGTGTACATA+TGG | 0.488428 | 5.4:-59638907 | MS.gene26298:CDS |
| AGTAATATCTAATCTATCTC+TGG | 0.490904 | 5.4:+59631912 | None:intergenic |
| CTTGATGACCCAGATGCTGC+TGG | 0.492675 | 5.4:-59638918 | MS.gene26298:CDS |
| TATTTCTAAATCAGCTTGGT+GGG | 0.495687 | 5.4:-59632744 | MS.gene26298:CDS |
| AAACACGCTTCCAAGGTAGA+AGG | 0.497402 | 5.4:+59638524 | None:intergenic |
| GGCGGTCGCGACGGAGGTGA+TGG | 0.497546 | 5.4:+59639827 | None:intergenic |
| TTATTGATGTTGAGATCTGA+TGG | 0.497653 | 5.4:+59632322 | None:intergenic |
| TTTCTTTGCCAGTCATTCCC+AGG | 0.499298 | 5.4:+59632719 | None:intergenic |
| TAAAGATGATCTTCCAGAAA+GGG | 0.505177 | 5.4:-59632875 | MS.gene26298:CDS |
| GTTGCGGCTGGATATGGTCT+CGG | 0.507867 | 5.4:-59639716 | MS.gene26298:CDS |
| TGCTCTGTCTAGTGGGCGCA+TGG | 0.510725 | 5.4:-59636410 | MS.gene26298:CDS |
| TGCTGCGATTGGCGGTGCTG+TGG | 0.511448 | 5.4:-59639669 | MS.gene26298:CDS |
| AGGCGGATGTTGAGCAGCGT+CGG | 0.511635 | 5.4:-59638722 | MS.gene26298:CDS |
| GTTTCAGATGCTCTGTCTAG+TGG | 0.513317 | 5.4:-59636418 | MS.gene26298:CDS |
| GGCGGATGTTGAGCAGCGTC+GGG | 0.514275 | 5.4:-59638721 | MS.gene26298:intron |
| CACAAGCCAGCAAGTTGTTG+AGG | 0.517371 | 5.4:+59632094 | None:intergenic |
| AAGGTTTATCGGAAACGACT+TGG | 0.518215 | 5.4:-59635305 | MS.gene26298:CDS |
| GCCGATGTTGCAAGTCTCGC+CGG | 0.519204 | 5.4:+59639758 | None:intergenic |
| CCTTTAAGCTCCTCCCCACC+AGG | 0.520392 | 5.4:+59638984 | None:intergenic |
| TGGAGTGAGCCAGGTTGTTG+AGG | 0.520474 | 5.4:-59636708 | MS.gene26298:CDS |
| TCTCGTCTGCAGTATCTGTT+GGG | 0.521111 | 5.4:-59631970 | MS.gene26298:CDS |
| AATCAGCTTGGTGGGATCCT+GGG | 0.523507 | 5.4:-59632736 | MS.gene26298:CDS |
| ACCTTCACAGACTCTTTCGT+GGG | 0.523663 | 5.4:-59632061 | MS.gene26298:CDS |
| TCTGCCAATGGATTTCAGCT+TGG | 0.523764 | 5.4:+59638141 | None:intergenic |
| ATTGGCGGTGCTGTGGCTGT+TGG | 0.528649 | 5.4:-59639662 | MS.gene26298:CDS |
| ACTCCACTGCAGCTGCACTT+CGG | 0.529765 | 5.4:-59631939 | MS.gene26298:CDS |
| TTCCCGAAGTGCAGCTGCAG+TGG | 0.530717 | 5.4:+59631936 | None:intergenic |
| TGCTACTGCACCGCAAGTTG+CGG | 0.530831 | 5.4:-59639606 | MS.gene26298:CDS |
| ATAGAAAAGATGGGAAAGCT+TGG | 0.531435 | 5.4:-59632916 | MS.gene26298:CDS |
| TGAAGTTCACTGGCCTTCTG+TGG | 0.531691 | 5.4:+59635197 | None:intergenic |
| TCAACAACCTGGCTCACTCC+AGG | 0.534836 | 5.4:+59636710 | None:intergenic |
| TGTGATTCCACCTGGTGGGG+AGG | 0.535122 | 5.4:-59638994 | MS.gene26298:CDS |
| TTAAAGATGATCTTCCAGAA+AGG | 0.535172 | 5.4:-59632876 | MS.gene26298:CDS |
| CGACGTCGTTGAGTGCGTAA+AGG | 0.535542 | 5.4:+59639902 | None:intergenic |
| CTGGACCAACACCACGGGCA+AGG | 0.536065 | 5.4:+59636618 | None:intergenic |
| ATGATCTTCCAGAAAGGGAC+AGG | 0.536382 | 5.4:-59632870 | MS.gene26298:CDS |
| TGCTATGTCTATTGCAAGCA+AGG | 0.536666 | 5.4:-59633286 | MS.gene26298:CDS |
| GACGGAGGTGATGGAGAAGG+AGG | 0.536977 | 5.4:+59639836 | None:intergenic |
| TACCTTCACAGACTCTTTCG+TGG | 0.538111 | 5.4:-59632062 | MS.gene26298:CDS |
| TCAAGGATGCAATTGGTGCA+GGG | 0.538444 | 5.4:-59633383 | MS.gene26298:CDS |
| ACAAGCCAGCAAGTTGTTGA+GGG | 0.538886 | 5.4:+59632095 | None:intergenic |
| AGTTCCTTCGGCGGTCGCGA+CGG | 0.539808 | 5.4:+59639818 | None:intergenic |
| TTTGTAATCTGAGCACCAAA+CGG | 0.540410 | 5.4:+59632790 | None:intergenic |
| GGAAGTAGAAATGCTGCGAT+TGG | 0.542418 | 5.4:-59639680 | MS.gene26298:CDS |
| GTATTTCTAAATCAGCTTGG+TGG | 0.543582 | 5.4:-59632745 | MS.gene26298:CDS |
| CTTACCAAGCTGCTCCACCC+TGG | 0.543662 | 5.4:+59632612 | None:intergenic |
| AGTAGAAATGCTGCGATTGG+CGG | 0.543722 | 5.4:-59639677 | MS.gene26298:CDS |
| GTTGCAAGTCTCGCCGGCAG+AGG | 0.545678 | 5.4:+59639764 | None:intergenic |
| CAAACAATCACCTCTGCCAA+TGG | 0.548000 | 5.4:+59638129 | None:intergenic |
| ACGGAGGTGATGGAGAAGGA+GGG | 0.548494 | 5.4:+59639837 | None:intergenic |
| ATCAATAAAGAGAAAGCAAG+AGG | 0.550837 | 5.4:-59632307 | MS.gene26298:CDS |
| GCATGTAAGGAAATTGGTTG+AGG | 0.551866 | 5.4:-59637503 | MS.gene26298:CDS |
| AGCATAAGCAGCAGCACCAC+CGG | 0.552378 | 5.4:+59639634 | None:intergenic |
| CATACCTGCATGAAGTTCAC+TGG | 0.555917 | 5.4:+59635187 | None:intergenic |
| ATATCCAGCCGCAACCGCGC+CGG | 0.556418 | 5.4:+59639724 | None:intergenic |
| TCCTTCGGCGGTCGCGACGG+AGG | 0.556518 | 5.4:+59639821 | None:intergenic |
| TTTCAAGGTCACTGAATCCC+AGG | 0.556554 | 5.4:-59638503 | MS.gene26298:intron |
| CATGCTGTCTAAATCAACAT+TGG | 0.560444 | 5.4:+59632447 | None:intergenic |
| GCAGAGGTAGTTTATCGACT+AGG | 0.561246 | 5.4:+59639780 | None:intergenic |
| TATGTATTTCTAAATCAGCT+TGG | 0.562599 | 5.4:-59632748 | MS.gene26298:CDS |
| CCACCAACTCATTTACAACC+AGG | 0.564010 | 5.4:+59633073 | None:intergenic |
| CAACTCGCTCATTCAGGCCG+TGG | 0.564393 | 5.4:-59632251 | MS.gene26298:CDS |
| AAGGCCAGGGTGGAGCAGCT+TGG | 0.564575 | 5.4:-59632616 | MS.gene26298:CDS |
| ACCTCCGTCGCGACCGCCGA+AGG | 0.565289 | 5.4:-59639822 | MS.gene26298:CDS |
| TGAAGTTGGGGACCGTGAGG+CGG | 0.567731 | 5.4:-59638739 | MS.gene26298:CDS |
| TTCAGCAATGTGTTGCTGAT+GGG | 0.569404 | 5.4:-59634435 | MS.gene26298:CDS |
| TTTATGTCGTCTTTCTGATG+AGG | 0.569622 | 5.4:-59637684 | MS.gene26298:intron |
| GGAGGTGATGGAGAAGGAGG+GGG | 0.570777 | 5.4:+59639839 | None:intergenic |
| TTTCAGATGCTCTGTCTAGT+GGG | 0.571234 | 5.4:-59636417 | MS.gene26298:CDS |
| CAATGTTGATTTAGACAGCA+TGG | 0.572042 | 5.4:-59632446 | MS.gene26298:CDS |
| AGTCGATAAACTACCTCTGC+CGG | 0.573647 | 5.4:-59639777 | MS.gene26298:CDS |
| AAAGAACTTATAGAAAAGAT+GGG | 0.574005 | 5.4:-59632925 | MS.gene26298:CDS |
| CTTCAGCAATGTGTTGCTGA+TGG | 0.577125 | 5.4:-59634436 | MS.gene26298:CDS |
| GCTTCCAAGCTGAAATCCAT+TGG | 0.577763 | 5.4:-59638145 | MS.gene26298:CDS |
| TTTACTTGATGTTACAACAA+AGG | 0.577769 | 5.4:-59635324 | MS.gene26298:CDS |
| TACTGCACCGCAAGTTGCGG+CGG | 0.578832 | 5.4:-59639603 | MS.gene26298:CDS |
| GTATGACGTTGACAGAAAGA+TGG | 0.581764 | 5.4:-59636470 | MS.gene26298:CDS |
| GCCGGCGAGACTTGCAACAT+CGG | 0.583219 | 5.4:-59639759 | MS.gene26298:CDS |
| GGCCTTCGTCAACTGTCCAT+CGG | 0.583424 | 5.4:+59632633 | None:intergenic |
| TGGACAGTTGACGAAGGCCA+GGG | 0.585664 | 5.4:-59632629 | MS.gene26298:CDS |
| ATTGAAACAGCTGTAACTCA+AGG | 0.586467 | 5.4:-59632508 | MS.gene26298:CDS |
| GACATAGATCGCCTTGCCCG+TGG | 0.586918 | 5.4:-59636629 | MS.gene26298:CDS |
| TCAGCAATGTGTTGCTGATG+GGG | 0.591795 | 5.4:-59634434 | MS.gene26298:CDS |
| TCTCTGTCTTAGTAGTGCCA+CGG | 0.592058 | 5.4:+59632234 | None:intergenic |
| CGCGACGGAGGTGATGGAGA+AGG | 0.592391 | 5.4:+59639833 | None:intergenic |
| GATGTGACTAGGATTCCGTT+TGG | 0.592667 | 5.4:-59632805 | MS.gene26298:CDS |
| AAATTAACCGCCGCAACTTG+CGG | 0.593368 | 5.4:+59639596 | None:intergenic |
| TATGTACACCAGCAGCATCT+GGG | 0.593520 | 5.4:+59638910 | None:intergenic |
| GTGAGGGTAGTAAAATGGAG+GGG | 0.593697 | 5.4:+59639927 | None:intergenic |
| TAGATTAGATATTACTGCAG+AGG | 0.594847 | 5.4:-59631905 | MS.gene26298:CDS |
| AGCTTTCAGGCAACAAGCTG+AGG | 0.597008 | 5.4:-59632665 | MS.gene26298:CDS |
| TCTTTCGTGGGACGTGTCAG+AGG | 0.597575 | 5.4:-59632049 | MS.gene26298:CDS |
| ACAGAGAAATCACAAGGGAG+TGG | 0.598045 | 5.4:-59632218 | MS.gene26298:intron |
| AAGCTGAAATCCATTGGCAG+AGG | 0.599396 | 5.4:-59638139 | MS.gene26298:intron |
| GCTGCTCAACATCCGCCTCA+CGG | 0.600168 | 5.4:+59638727 | None:intergenic |
| GGTGAGGGTAGTAAAATGGA+GGG | 0.600906 | 5.4:+59639926 | None:intergenic |
| AGAAACTGGACCAACACCAC+GGG | 0.601009 | 5.4:+59636613 | None:intergenic |
| CCTGGTTGTAAATGAGTTGG+TGG | 0.602426 | 5.4:-59633073 | MS.gene26298:CDS |
| AATAGACATAGCAGTCTCCC+TGG | 0.604418 | 5.4:+59633296 | None:intergenic |
| TGTCAAGCTCCTCAACAACC+TGG | 0.607294 | 5.4:+59636699 | None:intergenic |
| CGGAGGTGATGGAGAAGGAG+GGG | 0.609648 | 5.4:+59639838 | None:intergenic |
| AAGGCCAGTGAACTTCATGC+AGG | 0.612338 | 5.4:-59635191 | MS.gene26298:intron |
| GTCTAACTGGTGATGTGACT+AGG | 0.614021 | 5.4:-59632816 | MS.gene26298:CDS |
| ACCTTGAAAACACGCTTCCA+AGG | 0.615440 | 5.4:+59638517 | None:intergenic |
| TTATTCTTTATAGATTGTCA+AGG | 0.616284 | 5.4:-59633400 | MS.gene26298:intron |
| GGTTGTTGAGGAGCTTGACA+AGG | 0.616569 | 5.4:-59636696 | MS.gene26298:CDS |
| TATTGATGTTGAGATCTGAT+GGG | 0.617741 | 5.4:+59632323 | None:intergenic |
| ACCATCACTCCCAGATTGGT+AGG | 0.619109 | 5.4:-59638782 | MS.gene26298:intron |
| GTTGATAGCTTTCAACACCC+TGG | 0.622533 | 5.4:-59633091 | MS.gene26298:CDS |
| GGTTGAGGAAAATATTTCGG+TGG | 0.622652 | 5.4:-59637488 | MS.gene26298:CDS |
| GTGGCTGTTGGTGTTGCCGG+TGG | 0.626337 | 5.4:-59639650 | MS.gene26298:CDS |
| CACGGCCTGAATGAGCGAGT+TGG | 0.627450 | 5.4:+59632252 | None:intergenic |
| TGTGTAAGAAGAGTTAAGCG+TGG | 0.627780 | 5.4:+59639952 | None:intergenic |
| TTGAAACAGCTGTAACTCAA+GGG | 0.628422 | 5.4:-59632507 | MS.gene26298:CDS |
| GGCTGTCATCGTTGCCGGCG+CGG | 0.628732 | 5.4:-59639738 | MS.gene26298:CDS |
| CACCCTGGTTGTAAATGAGT+TGG | 0.632246 | 5.4:-59633076 | MS.gene26298:CDS |
| CAAGGATGCAATTGGTGCAG+GGG | 0.632500 | 5.4:-59633382 | MS.gene26298:CDS |
| CTTGGACAGACTGTTTCAAG+TGG | 0.638180 | 5.4:-59635287 | MS.gene26298:CDS |
| TGGTGTGAGCAAGCAAGATG+AGG | 0.638791 | 5.4:-59639397 | MS.gene26298:CDS |
| CACCAACTCATTTACAACCA+GGG | 0.646700 | 5.4:+59633074 | None:intergenic |
| AAGAAGAGTTAAGCGTGGAA+GGG | 0.654083 | 5.4:+59639957 | None:intergenic |
| ACATGGCTTGCGACTTACCA+GGG | 0.655997 | 5.4:-59633313 | MS.gene26298:CDS |
| ACGTCGTTGAGTGCGTAAAG+GGG | 0.656088 | 5.4:+59639904 | None:intergenic |
| TTAAGCTCCTCCCCACCAGG+TGG | 0.656741 | 5.4:+59638987 | None:intergenic |
| AAGAAACTGGACCAACACCA+CGG | 0.657219 | 5.4:+59636612 | None:intergenic |
| AGCCGATGGACAGTTGACGA+AGG | 0.657964 | 5.4:-59632635 | MS.gene26298:CDS |
| CGTCGTTGAGTGCGTAAAGG+GGG | 0.658796 | 5.4:+59639905 | None:intergenic |
| TGGCGTCGGAGGAACAGCGA+GGG | 0.660014 | 5.4:+59639864 | None:intergenic |
| TCAGTAAGAAAAGCAGCACA+TGG | 0.663049 | 5.4:-59633330 | MS.gene26298:CDS |
| ACTAAGACAGAGAAATCACA+AGG | 0.663500 | 5.4:-59632224 | MS.gene26298:CDS |
| AGGTACTGGTGAGTTTGATG+AGG | 0.664047 | 5.4:-59632365 | MS.gene26298:CDS |
| GAGTTGGTGGCAGACATCAA+AGG | 0.664140 | 5.4:-59633060 | MS.gene26298:CDS |
| TGGGCGCATGGAAGATAACA+AGG | 0.664647 | 5.4:-59636398 | MS.gene26298:intron |
| GAAATAATGGATGTTCATAG+GGG | 0.665094 | 5.4:-59632700 | MS.gene26298:CDS |
| TTGGCGTCGGAGGAACAGCG+AGG | 0.670148 | 5.4:+59639863 | None:intergenic |
| GCTTGAAGTTGGGGACCGTG+AGG | 0.681948 | 5.4:-59638742 | MS.gene26298:CDS |
| CGACCGCCGAAGGAACTCGT+CGG | 0.685026 | 5.4:-59639812 | MS.gene26298:CDS |
| TGTGTCAAATATTGTATTTG+GGG | 0.685103 | 5.4:-59638560 | MS.gene26298:CDS |
| GGTCTCGGTTCAAGATTCGG+AGG | 0.686727 | 5.4:-59639701 | MS.gene26298:CDS |
| AAACAGCTGTAACTCAAGGG+AGG | 0.687824 | 5.4:-59632504 | MS.gene26298:CDS |
| GCAGCTCATGCAGATATCTG+TGG | 0.690840 | 5.4:-59634337 | MS.gene26298:CDS |
| GCTGCTTCAACAGTCTGTTG+AGG | 0.695972 | 5.4:+59634355 | None:intergenic |
| AGACCGACGAGTTCCTTCGG+CGG | 0.698241 | 5.4:+59639809 | None:intergenic |
| TGCTGCTGGTGTACATATGG+AGG | 0.702321 | 5.4:-59638904 | MS.gene26298:intron |
| TGATGGGGAGCTCAATGATG+AGG | 0.702888 | 5.4:-59634419 | MS.gene26298:CDS |
| AGGGGTTGATGGATATGATG+AGG | 0.706998 | 5.4:-59633364 | MS.gene26298:CDS |
| TCCCACGAAAGAGTCTGTGA+AGG | 0.708047 | 5.4:+59632060 | None:intergenic |
| ACAGTTGACGAAGGCCAGGG+TGG | 0.710614 | 5.4:-59632626 | MS.gene26298:CDS |
| GGAGGAGCTTAAAGGCGACG+AGG | 0.747889 | 5.4:-59638976 | MS.gene26298:CDS |
| TATGTCTATTGCAAGCAAGG+CGG | 0.755283 | 5.4:-59633283 | MS.gene26298:intron |
| CTAAGACAGAGAAATCACAA+GGG | 0.779464 | 5.4:-59632223 | MS.gene26298:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 59631885 | 59639984 | 59631885 | ID=MS.gene26298 |
| chr5.4 | mRNA | 59631885 | 59639984 | 59631885 | ID=MS.gene26298.t1;Parent=MS.gene26298 |
| chr5.4 | exon | 59639524 | 59639984 | 59639524 | ID=MS.gene26298.t1.exon1;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59639524 | 59639984 | 59639524 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59639363 | 59639422 | 59639363 | ID=MS.gene26298.t1.exon2;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59639363 | 59639422 | 59639363 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59638905 | 59639028 | 59638905 | ID=MS.gene26298.t1.exon3;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59638905 | 59639028 | 59638905 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59638722 | 59638790 | 59638722 | ID=MS.gene26298.t1.exon4;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59638722 | 59638790 | 59638722 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59638504 | 59638602 | 59638504 | ID=MS.gene26298.t1.exon5;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59638504 | 59638602 | 59638504 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59638140 | 59638206 | 59638140 | ID=MS.gene26298.t1.exon6;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59638140 | 59638206 | 59638140 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59637685 | 59637749 | 59637685 | ID=MS.gene26298.t1.exon7;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59637685 | 59637749 | 59637685 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59637454 | 59637548 | 59637454 | ID=MS.gene26298.t1.exon8;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59637454 | 59637548 | 59637454 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59636606 | 59636733 | 59636606 | ID=MS.gene26298.t1.exon9;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59636606 | 59636733 | 59636606 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59636399 | 59636499 | 59636399 | ID=MS.gene26298.t1.exon10;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59636399 | 59636499 | 59636399 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59635192 | 59635408 | 59635192 | ID=MS.gene26298.t1.exon11;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59635192 | 59635408 | 59635192 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59634321 | 59634475 | 59634321 | ID=MS.gene26298.t1.exon12;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59634321 | 59634475 | 59634321 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59633284 | 59633409 | 59633284 | ID=MS.gene26298.t1.exon13;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59633284 | 59633409 | 59633284 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59632219 | 59633193 | 59632219 | ID=MS.gene26298.t1.exon14;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59632219 | 59633193 | 59632219 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| chr5.4 | exon | 59631885 | 59632124 | 59631885 | ID=MS.gene26298.t1.exon15;Parent=MS.gene26298.t1 |
| chr5.4 | CDS | 59631885 | 59632124 | 59631885 | ID=cds.MS.gene26298.t1;Parent=MS.gene26298.t1 |
| Gene Sequence |
| Protein sequence |
