Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26425.t1 | XP_013456903.1 | 93.6 | 250 | 16 | 0 | 1 | 250 | 1 | 250 | 3.70E-133 | 484.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26425.t1 | Q66JD1 | 30.5 | 203 | 128 | 3 | 55 | 245 | 80 | 281 | 2.4e-16 | 87.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26425.t1 | A0A072UME8 | 93.6 | 250 | 16 | 0 | 1 | 250 | 1 | 250 | 2.7e-133 | 484.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26425 | MS.gene98229 | PPI |
| MS.gene98228 | MS.gene26425 | PPI |
| MS.gene26425 | MS.gene08126 | PPI |
| MS.gene20081 | MS.gene26425 | PPI |
| MS.gene26425 | MS.gene96480 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26425.t1 | MTR_4g087955 | 93.600 | 250 | 16 | 0 | 1 | 250 | 1 | 250 | 8.03e-179 | 491 |
| MS.gene26425.t1 | MTR_1g097870 | 58.416 | 101 | 24 | 2 | 150 | 250 | 62 | 144 | 8.24e-32 | 114 |
| MS.gene26425.t1 | MTR_1g097880 | 51.064 | 94 | 28 | 4 | 36 | 129 | 2 | 77 | 4.69e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26425.t1 | AT2G34050 | 73.206 | 209 | 56 | 0 | 42 | 250 | 40 | 248 | 2.96e-118 | 338 |
Find 55 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCGGTTGATGGAATTTC+TGG | 0.191016 | 4.4:-24854388 | None:intergenic |
| TATCTTCAACCTCCAGAATT+TGG | 0.194257 | 4.4:+24854273 | MS.gene26425:CDS |
| ATTGAAAATGGTTACAAAAT+AGG | 0.236464 | 4.4:-24856924 | None:intergenic |
| TGCTATGGTTCTCCAAATTC+TGG | 0.304753 | 4.4:-24854285 | None:intergenic |
| CTGAAAATATCACTTCCATT+TGG | 0.350306 | 4.4:+24854543 | MS.gene26425:CDS |
| TGCAGGGGAGTTGCGGTTGA+TGG | 0.354027 | 4.4:-24854397 | None:intergenic |
| TGAAAATATCACTTCCATTT+GGG | 0.358159 | 4.4:+24854544 | MS.gene26425:CDS |
| ACCCCATTTCAGAAAATTGC+AGG | 0.375367 | 4.4:-24854414 | None:intergenic |
| TCCAAGTGAATTTGAGTTCA+AGG | 0.383385 | 4.4:+24856878 | MS.gene26425:CDS |
| GTAAAATGATACAGTATAGT+AGG | 0.387097 | 4.4:-24856697 | None:intergenic |
| CTCCGAGTCAGTCAGCTTGC+TGG | 0.395915 | 4.4:-24856775 | None:intergenic |
| AGCAAGTCTTTATCACTTGC+TGG | 0.405466 | 4.4:+24854917 | MS.gene26425:CDS |
| TCCTTTGCAACTCAAGCCAT+TGG | 0.422997 | 4.4:+24854481 | MS.gene26425:CDS |
| CAGAAACTGTTGTGAAAGAA+TGG | 0.433681 | 4.4:-24854352 | None:intergenic |
| ACAAAGGAATGACAAAATAT+CGG | 0.436244 | 4.4:-24855048 | None:intergenic |
| CACATAGGTAGAGGTCATAT+TGG | 0.436318 | 4.4:+24854882 | MS.gene26425:CDS |
| ATTCCTTTGTGGAGGGGAAG+TGG | 0.451596 | 4.4:+24855061 | MS.gene26425:CDS |
| TTTCTGAAATGGGGTTCGCT+TGG | 0.455854 | 4.4:+24854422 | MS.gene26425:CDS |
| TATATAACAATGTTTGTTCA+AGG | 0.456491 | 4.4:+24855085 | MS.gene26425:CDS |
| TGACTGACTCGGAGGCGAAA+TGG | 0.460162 | 4.4:+24856784 | MS.gene26425:CDS |
| TATTGAGAGGCTCAAGGATC+GGG | 0.463811 | 4.4:+24854517 | MS.gene26425:CDS |
| TACTGGTCTTGAAGATTACA+AGG | 0.470857 | 4.4:+24856653 | MS.gene26425:CDS |
| ATTTGCAGAGAGCAAGGACT+TGG | 0.474512 | 4.4:+24856725 | MS.gene26425:CDS |
| AGACATTACATCATCCCAAA+TGG | 0.489838 | 4.4:-24854558 | None:intergenic |
| TCCTTGAACTCAAATTCACT+TGG | 0.494816 | 4.4:-24856879 | None:intergenic |
| GGGGTTCGCTTGGATTCTGC+AGG | 0.497969 | 4.4:+24854432 | MS.gene26425:CDS |
| TTGCGGTTGATGGAATTTCT+GGG | 0.509138 | 4.4:-24854387 | None:intergenic |
| TTTCAGTATCACATAGGTAG+AGG | 0.509550 | 4.4:+24854873 | MS.gene26425:intron |
| CACAGAATTTGCAGAGAGCA+AGG | 0.512541 | 4.4:+24856719 | MS.gene26425:CDS |
| AGAAAATTGCAGGGGAGTTG+CGG | 0.514104 | 4.4:-24854404 | None:intergenic |
| TAAAATGATACAGTATAGTA+GGG | 0.515987 | 4.4:-24856696 | None:intergenic |
| TCCAATGGCTTGAGTTGCAA+AGG | 0.530974 | 4.4:-24854482 | None:intergenic |
| AGAAACTGTTGTGAAAGAAT+GGG | 0.537123 | 4.4:-24854351 | None:intergenic |
| CTCGGAGGCGAAATGGCTTG+TGG | 0.552401 | 4.4:+24856791 | MS.gene26425:CDS |
| AGGACTTGGTACTGATCCGT+GGG | 0.562824 | 4.4:+24856739 | MS.gene26425:CDS |
| TTTGTCATTCCTTTGTGGAG+GGG | 0.566411 | 4.4:+24855055 | MS.gene26425:CDS |
| ATATTGAGAGGCTCAAGGAT+CGG | 0.568445 | 4.4:+24854516 | MS.gene26425:CDS |
| CCCCATTTCAGAAAATTGCA+GGG | 0.572888 | 4.4:-24854413 | None:intergenic |
| AGGACGTCAAGATTCGCTAC+TGG | 0.579599 | 4.4:+24854452 | MS.gene26425:CDS |
| TACCAGCAAGCTGACTGACT+CGG | 0.584954 | 4.4:+24856773 | MS.gene26425:CDS |
| CGTAGATATTGAGAGGCTCA+AGG | 0.587957 | 4.4:+24854511 | MS.gene26425:CDS |
| TGGAGCATAGAGCTAAAGAA+TGG | 0.597620 | 4.4:+24854937 | MS.gene26425:CDS |
| ATTCTATCGTAGATATTGAG+AGG | 0.607771 | 4.4:+24854504 | MS.gene26425:CDS |
| AAGGACTTGGTACTGATCCG+TGG | 0.611446 | 4.4:+24856738 | MS.gene26425:CDS |
| TAGGCATGTTCAATGCTCGC+AGG | 0.614925 | 4.4:-24856905 | None:intergenic |
| CTTGAAGATTACAAGGCTAG+AGG | 0.618380 | 4.4:+24856660 | MS.gene26425:CDS |
| ATATCTACGATAGAATCCAA+TGG | 0.618401 | 4.4:-24854497 | None:intergenic |
| GAATTTCTGGGAAGTTGCTG+CGG | 0.624275 | 4.4:-24854375 | None:intergenic |
| TATGGTTCTCCAAATTCTGG+AGG | 0.630186 | 4.4:-24854282 | None:intergenic |
| CCCATTTCAGAAAATTGCAG+GGG | 0.636308 | 4.4:-24854412 | None:intergenic |
| TAACCACTTCCCCTCCACAA+AGG | 0.668270 | 4.4:-24855064 | None:intergenic |
| CAGCAAGCTGACTGACTCGG+AGG | 0.679284 | 4.4:+24856776 | MS.gene26425:CDS |
| GTTGTGAAAGAATGGGCATG+AGG | 0.724603 | 4.4:-24854344 | None:intergenic |
| TGGTAAATACAACATCCCCA+CGG | 0.737738 | 4.4:-24856755 | None:intergenic |
| GGACTTGGTACTGATCCGTG+GGG | 0.769538 | 4.4:+24856740 | MS.gene26425:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAACTTAAAACAAAAAAAT+TGG | - | chr4.4:24856223-24856242 | None:intergenic | 15.0% |
| !! | TAATTATATCTTGAAACAAT+TGG | + | chr4.4:24856396-24856415 | MS.gene26425:intron | 15.0% |
| !!! | CTTAGTTTTTAACATTTTTA+TGG | + | chr4.4:24856341-24856360 | MS.gene26425:intron | 15.0% |
| !!! | TAAATTTGAAGTAAAAATGT+TGG | + | chr4.4:24855865-24855884 | MS.gene26425:intron | 15.0% |
| !! | AATGTTAAAAACTAAGCATA+TGG | - | chr4.4:24856337-24856356 | None:intergenic | 20.0% |
| !! | ATATTCCAAAATGATCTTAT+GGG | + | chr4.4:24855657-24855676 | MS.gene26425:intron | 20.0% |
| !! | TAAAACAAAAAAATTGGTAC+TGG | - | chr4.4:24856217-24856236 | None:intergenic | 20.0% |
| !! | TAAAATGATACAGTATAGTA+GGG | - | chr4.4:24856699-24856718 | None:intergenic | 20.0% |
| !! | TATATAACAATGTTTGTTCA+AGG | + | chr4.4:24855085-24855104 | MS.gene26425:CDS | 20.0% |
| !! | TATTGTTTACAAATGTTGAT+AGG | + | chr4.4:24854635-24854654 | MS.gene26425:intron | 20.0% |
| !! | TGGATTAAAATATTTCAATC+AGG | + | chr4.4:24855885-24855904 | MS.gene26425:intron | 20.0% |
| !! | TTGTATCTGAAAGAATATTA+GGG | - | chr4.4:24855551-24855570 | None:intergenic | 20.0% |
| !!! | AATTTTTATTGGCAACTATA+GGG | + | chr4.4:24856184-24856203 | MS.gene26425:intron | 20.0% |
| !!! | ATATTTTACATAACCTATCA+TGG | - | chr4.4:24854695-24854714 | None:intergenic | 20.0% |
| !!! | ATTTAACTTTAACAAAGAAG+GGG | + | chr4.4:24855785-24855804 | MS.gene26425:intron | 20.0% |
| !!! | CATTTAACTTTAACAAAGAA+GGG | + | chr4.4:24855784-24855803 | MS.gene26425:intron | 20.0% |
| !!! | GTTTTAAAATTCTCATTTCT+GGG | - | chr4.4:24856040-24856059 | None:intergenic | 20.0% |
| !!! | TCATTTAACTTTAACAAAGA+AGG | + | chr4.4:24855783-24855802 | MS.gene26425:intron | 20.0% |
| !!! | TGTTTTAAAATTCTCATTTC+TGG | - | chr4.4:24856041-24856060 | None:intergenic | 20.0% |
| !!! | TTGTTGTTAACTATATAACT+TGG | + | chr4.4:24854842-24854861 | MS.gene26425:intron | 20.0% |
| ! | AAAATAAAAATCACTGTAGC+AGG | + | chr4.4:24856111-24856130 | MS.gene26425:intron | 25.0% |
| ! | AAACTTTAACTGATAATAGC+CGG | - | chr4.4:24855968-24855987 | None:intergenic | 25.0% |
| ! | AATTTATTTGAGTCCATGAT+AGG | + | chr4.4:24854679-24854698 | MS.gene26425:intron | 25.0% |
| ! | ACAAAGGAATGACAAAATAT+CGG | - | chr4.4:24855051-24855070 | None:intergenic | 25.0% |
| ! | ACCAAGTTTATTAATAGACA+TGG | - | chr4.4:24855436-24855455 | None:intergenic | 25.0% |
| ! | ATACAATTACCAAAGAGAAA+AGG | - | chr4.4:24854618-24854637 | None:intergenic | 25.0% |
| ! | ATTTGAATAAATGACAAGAG+AGG | - | chr4.4:24855126-24855145 | None:intergenic | 25.0% |
| ! | CAAATGTTAGTATTATGCTA+GGG | + | chr4.4:24855256-24855275 | MS.gene26425:intron | 25.0% |
| ! | CATATTCCAAAATGATCTTA+TGG | + | chr4.4:24855656-24855675 | MS.gene26425:intron | 25.0% |
| ! | CCAAGTTTATTAATAGACAT+GGG | - | chr4.4:24855435-24855454 | None:intergenic | 25.0% |
| ! | CTATAGTTGCCAATAAAAAT+TGG | - | chr4.4:24856185-24856204 | None:intergenic | 25.0% |
| ! | CTTGTATCTGAAAGAATATT+AGG | - | chr4.4:24855552-24855571 | None:intergenic | 25.0% |
| ! | GGTATTGTATGCTAAATAAA+TGG | - | chr4.4:24855530-24855549 | None:intergenic | 25.0% |
| ! | GTAAAATGATACAGTATAGT+AGG | - | chr4.4:24856700-24856719 | None:intergenic | 25.0% |
| ! | TATCTTGAAACAATTGGAAA+TGG | + | chr4.4:24856402-24856421 | MS.gene26425:intron | 25.0% |
| ! | TATTCCAAAATGATCTTATG+GGG | + | chr4.4:24855658-24855677 | MS.gene26425:intron | 25.0% |
| ! | TCCAAAAAATATGTACCATT+AGG | - | chr4.4:24856255-24856274 | None:intergenic | 25.0% |
| ! | TGAAAATATCACTTCCATTT+GGG | + | chr4.4:24854544-24854563 | MS.gene26425:CDS | 25.0% |
| ! | TTATATCATATTGAGATCCA+CGG | + | chr4.4:24855699-24855718 | MS.gene26425:intron | 25.0% |
| ! | TTTGAATAAATGACAAGAGA+GGG | - | chr4.4:24855125-24855144 | None:intergenic | 25.0% |
| !! | AACCCTTTTTCCATTTAAAT+AGG | + | chr4.4:24855216-24855235 | MS.gene26425:intron | 25.0% |
| !! | ACCCTTTTTCCATTTAAATA+GGG | + | chr4.4:24855217-24855236 | MS.gene26425:intron | 25.0% |
| !! | AGTTGTTTCATATTTCCTAA+TGG | + | chr4.4:24856237-24856256 | MS.gene26425:intron | 25.0% |
| !! | CAATTTTTATTGGCAACTAT+AGG | + | chr4.4:24856183-24856202 | MS.gene26425:intron | 25.0% |
| !! | CTACAAGTTATTTAACTTCA+AGG | - | chr4.4:24855942-24855961 | None:intergenic | 25.0% |
| !! | TTCTTTATTCCTTTTCTCTT+TGG | + | chr4.4:24854606-24854625 | MS.gene26425:intron | 25.0% |
| !! | TTTTAAACCTGCTATCATAT+TGG | - | chr4.4:24856372-24856391 | None:intergenic | 25.0% |
| !!! | AAAAAGTACCCCTATTTAAA+TGG | - | chr4.4:24855229-24855248 | None:intergenic | 25.0% |
| !!! | CTTTTTATTTGAATGATGTG+AGG | + | chr4.4:24856826-24856845 | MS.gene26425:CDS | 25.0% |
| !!! | GTTTTTTTTCAGTATCACAT+AGG | + | chr4.4:24854867-24854886 | MS.gene26425:intron | 25.0% |
| !!! | TCAAATTTTAGTTTTCCTTC+AGG | + | chr4.4:24855582-24855601 | MS.gene26425:intron | 25.0% |
| !!! | TCCTAATGGTACATATTTTT+TGG | + | chr4.4:24856251-24856270 | MS.gene26425:intron | 25.0% |
| AAACTGTTCAAACTTCAAAG+TGG | + | chr4.4:24855994-24856013 | MS.gene26425:intron | 30.0% | |
| ACCCCTATTTAAATGGAAAA+AGG | - | chr4.4:24855222-24855241 | None:intergenic | 30.0% | |
| AGAAACTGTTGTGAAAGAAT+GGG | - | chr4.4:24854354-24854373 | None:intergenic | 30.0% | |
| ATATCTACGATAGAATCCAA+TGG | - | chr4.4:24854500-24854519 | None:intergenic | 30.0% | |
| ATATTTCAATCAGGAACACA+AGG | + | chr4.4:24855894-24855913 | MS.gene26425:intron | 30.0% | |
| ATTCTATCGTAGATATTGAG+AGG | + | chr4.4:24854504-24854523 | MS.gene26425:CDS | 30.0% | |
| CAAATTCACAGAACAAGTAT+TGG | - | chr4.4:24854982-24855001 | None:intergenic | 30.0% | |
| CCAAATGTTAGTATTATGCT+AGG | + | chr4.4:24855255-24855274 | MS.gene26425:intron | 30.0% | |
| CCCATGTCTATTAATAAACT+TGG | + | chr4.4:24855432-24855451 | MS.gene26425:intron | 30.0% | |
| CCCCTATTTAAATGGAAAAA+GGG | - | chr4.4:24855221-24855240 | None:intergenic | 30.0% | |
| CCTAGCATAATACTAACATT+TGG | - | chr4.4:24855258-24855277 | None:intergenic | 30.0% | |
| CTGAAAATATCACTTCCATT+TGG | + | chr4.4:24854543-24854562 | MS.gene26425:CDS | 30.0% | |
| GTTATCTTCAATGTGACTAT+GGG | + | chr4.4:24856152-24856171 | MS.gene26425:intron | 30.0% | |
| TAAAACATCAACAAGCCTAA+AGG | + | chr4.4:24856054-24856073 | MS.gene26425:intron | 30.0% | |
| TCTATTATATCTGATCCTGA+AGG | - | chr4.4:24855600-24855619 | None:intergenic | 30.0% | |
| TTAATAGACATGGGAGAATA+AGG | - | chr4.4:24855426-24855445 | None:intergenic | 30.0% | |
| TTAGTATTATGCTAGGGATA+GGG | + | chr4.4:24855262-24855281 | MS.gene26425:intron | 30.0% | |
| TTGAAAAGTTGAAGTGAAAG+CGG | + | chr4.4:24855330-24855349 | MS.gene26425:intron | 30.0% | |
| ! | CAAATGGAAGTGATATTTTC+AGG | - | chr4.4:24854545-24854564 | None:intergenic | 30.0% |
| ! | CCCTTTTTCCATTTAAATAG+GGG | + | chr4.4:24855218-24855237 | MS.gene26425:intron | 30.0% |
| ! | GATATTTTGTCATTCCTTTG+TGG | + | chr4.4:24855050-24855069 | MS.gene26425:CDS | 30.0% |
| ! | GTTAAATAACTTGTAGAGTC+CGG | + | chr4.4:24855946-24855965 | MS.gene26425:intron | 30.0% |
| ! | TGATAGGTAAAAAAGGCTTT+TGG | - | chr4.4:24856471-24856490 | None:intergenic | 30.0% |
| !! | CGAGTTTTGATAGGTAAAAA+AGG | - | chr4.4:24856478-24856497 | None:intergenic | 30.0% |
| !! | GTAGATTGTCTATGTTTTGA+TGG | + | chr4.4:24854791-24854810 | MS.gene26425:intron | 30.0% |
| !!! | GAAGATTGAGATGTTTTTTC+TGG | - | chr4.4:24854318-24854337 | None:intergenic | 30.0% |
| AAAAATCTCAAGACATTCCG+TGG | - | chr4.4:24855719-24855738 | None:intergenic | 35.0% | |
| AAAGTGGCCAATGTCAAAAA+TGG | + | chr4.4:24856010-24856029 | MS.gene26425:intron | 35.0% | |
| AGACATTACATCATCCCAAA+TGG | - | chr4.4:24854561-24854580 | None:intergenic | 35.0% | |
| AGTCACATTGAAGATAACCA+AGG | - | chr4.4:24856150-24856169 | None:intergenic | 35.0% | |
| AGTTGCCAATAAAAATTGGC+AGG | - | chr4.4:24856181-24856200 | None:intergenic | 35.0% | |
| CAGAAACTGTTGTGAAAGAA+TGG | - | chr4.4:24854355-24854374 | None:intergenic | 35.0% | |
| GGTTATCTTCAATGTGACTA+TGG | + | chr4.4:24856151-24856170 | MS.gene26425:intron | 35.0% | |
| GGTTTACATCTCAACTATCA+AGG | - | chr4.4:24856450-24856469 | None:intergenic | 35.0% | |
| GTTAGTATTATGCTAGGGAT+AGG | + | chr4.4:24855261-24855280 | MS.gene26425:intron | 35.0% | |
| TATCTTCAACCTCCAGAATT+TGG | + | chr4.4:24854273-24854292 | MS.gene26425:CDS | 35.0% | |
| TCCTTGAACTCAAATTCACT+TGG | - | chr4.4:24856882-24856901 | None:intergenic | 35.0% | |
| TGAAAAGTTGAAGTGAAAGC+GGG | + | chr4.4:24855331-24855350 | MS.gene26425:intron | 35.0% | |
| TTTCAGTATCACATAGGTAG+AGG | + | chr4.4:24854873-24854892 | MS.gene26425:intron | 35.0% | |
| ! | ATTTTGTCATTCCTTTGTGG+AGG | + | chr4.4:24855053-24855072 | MS.gene26425:CDS | 35.0% |
| ! | GGTTTCCTGCCAATTTTTAT+TGG | + | chr4.4:24856173-24856192 | MS.gene26425:intron | 35.0% |
| ! | TCCAAGTGAATTTGAGTTCA+AGG | + | chr4.4:24856878-24856897 | MS.gene26425:CDS | 35.0% |
| ! | TTTAACTTCAAGGATAGTGC+AGG | - | chr4.4:24855932-24855951 | None:intergenic | 35.0% |
| ! | TTTTGTCATTCCTTTGTGGA+GGG | + | chr4.4:24855054-24855073 | MS.gene26425:CDS | 35.0% |
| !! | ATAGGAGTCTATGACTTGTT+TGG | + | chr4.4:24854653-24854672 | MS.gene26425:intron | 35.0% |
| !! | TACTGGTCTTGAAGATTACA+AGG | + | chr4.4:24856653-24856672 | MS.gene26425:CDS | 35.0% |
| !! | TGCTTTGTTCGAGTTTTGAT+AGG | - | chr4.4:24856487-24856506 | None:intergenic | 35.0% |
| !!! | TGAGATGTTTTTTCTGGCAT+TGG | - | chr4.4:24854312-24854331 | None:intergenic | 35.0% |
| ACAAATACAGACCAGCAATC+AGG | - | chr4.4:24855188-24855207 | None:intergenic | 40.0% | |
| ACCCCATTTCAGAAAATTGC+AGG | - | chr4.4:24854417-24854436 | None:intergenic | 40.0% | |
| AGCAAGTCTTTATCACTTGC+TGG | + | chr4.4:24854917-24854936 | MS.gene26425:CDS | 40.0% | |
| ATATTGAGAGGCTCAAGGAT+CGG | + | chr4.4:24854516-24854535 | MS.gene26425:CDS | 40.0% | |
| ATCACACTCGCAACATACAA+AGG | + | chr4.4:24855489-24855508 | MS.gene26425:intron | 40.0% | |
| ATCGAACAGATCATGACTGA+TGG | + | chr4.4:24855829-24855848 | MS.gene26425:intron | 40.0% | |
| CACATAGGTAGAGGTCATAT+TGG | + | chr4.4:24854882-24854901 | MS.gene26425:CDS | 40.0% | |
| CAGGAAAAAAGTTGCTTCCT+TGG | + | chr4.4:24856130-24856149 | MS.gene26425:intron | 40.0% | |
| CCCATTTCAGAAAATTGCAG+GGG | - | chr4.4:24854415-24854434 | None:intergenic | 40.0% | |
| CCCCATTTCAGAAAATTGCA+GGG | - | chr4.4:24854416-24854435 | None:intergenic | 40.0% | |
| CTTGAAGATTACAAGGCTAG+AGG | + | chr4.4:24856660-24856679 | MS.gene26425:CDS | 40.0% | |
| GACTTCTATCGAACACCTTT+AGG | - | chr4.4:24856072-24856091 | None:intergenic | 40.0% | |
| GGAACTTCCAATATGATAGC+AGG | + | chr4.4:24856362-24856381 | MS.gene26425:intron | 40.0% | |
| GGATAGTGCAGGATTTCTAT+TGG | - | chr4.4:24855921-24855940 | None:intergenic | 40.0% | |
| GGCTGCAAAAGAATAAGCAA+AGG | - | chr4.4:24855030-24855049 | None:intergenic | 40.0% | |
| TATGGTTCTCCAAATTCTGG+AGG | - | chr4.4:24854285-24854304 | None:intergenic | 40.0% | |
| TATTCTACCCATATCCAAGC+AGG | - | chr4.4:24855301-24855320 | None:intergenic | 40.0% | |
| TCATGATCTGTTCGATTGCA+AGG | - | chr4.4:24855825-24855844 | None:intergenic | 40.0% | |
| TGCTATGGTTCTCCAAATTC+TGG | - | chr4.4:24854288-24854307 | None:intergenic | 40.0% | |
| TGGAGCATAGAGCTAAAGAA+TGG | + | chr4.4:24854937-24854956 | MS.gene26425:CDS | 40.0% | |
| TGGTAAATACAACATCCCCA+CGG | - | chr4.4:24856758-24856777 | None:intergenic | 40.0% | |
| TGTTGCGAGTGTGATAAGAT+TGG | - | chr4.4:24855484-24855503 | None:intergenic | 40.0% | |
| TTTGTCATTCCTTTGTGGAG+GGG | + | chr4.4:24855055-24855074 | MS.gene26425:CDS | 40.0% | |
| ! | AGACCAGTAAAAAGCATGTG+CGG | - | chr4.4:24856642-24856661 | None:intergenic | 40.0% |
| ! | CGATCCCCATAAGATCATTT+TGG | - | chr4.4:24855665-24855684 | None:intergenic | 40.0% |
| !! | GGGCAAACCATTTTTGACAT+TGG | - | chr4.4:24856020-24856039 | None:intergenic | 40.0% |
| !! | TCCCCTGCAATTTTCTGAAA+TGG | + | chr4.4:24854411-24854430 | MS.gene26425:CDS | 40.0% |
| !! | TTGCGGTTGATGGAATTTCT+GGG | - | chr4.4:24854390-24854409 | None:intergenic | 40.0% |
| !! | TTTTCTGGCATTGGATGCTA+TGG | - | chr4.4:24854303-24854322 | None:intergenic | 40.0% |
| !!! | CCCCTGCAATTTTCTGAAAT+GGG | + | chr4.4:24854412-24854431 | MS.gene26425:CDS | 40.0% |
| !!! | CCCTGCAATTTTCTGAAATG+GGG | + | chr4.4:24854413-24854432 | MS.gene26425:CDS | 40.0% |
| ACACTCAACCTGCTTGGATA+TGG | + | chr4.4:24855290-24855309 | MS.gene26425:intron | 45.0% | |
| AGAAAATTGCAGGGGAGTTG+CGG | - | chr4.4:24854407-24854426 | None:intergenic | 45.0% | |
| ATTTGCAGAGAGCAAGGACT+TGG | + | chr4.4:24856725-24856744 | MS.gene26425:CDS | 45.0% | |
| CACAGAATTTGCAGAGAGCA+AGG | + | chr4.4:24856719-24856738 | MS.gene26425:CDS | 45.0% | |
| CACTCAACCTGCTTGGATAT+GGG | + | chr4.4:24855291-24855310 | MS.gene26425:intron | 45.0% | |
| CGTAGATATTGAGAGGCTCA+AGG | + | chr4.4:24854511-24854530 | MS.gene26425:CDS | 45.0% | |
| CTTTAACAAAGAAGGGGTCG+TGG | + | chr4.4:24855791-24855810 | MS.gene26425:intron | 45.0% | |
| GATCAAACACTCAACCTGCT+TGG | + | chr4.4:24855284-24855303 | MS.gene26425:intron | 45.0% | |
| GTTGTGAAAGAATGGGCATG+AGG | - | chr4.4:24854347-24854366 | None:intergenic | 45.0% | |
| TATTGAGAGGCTCAAGGATC+GGG | + | chr4.4:24854517-24854536 | MS.gene26425:CDS | 45.0% | |
| TCCTTTGCAACTCAAGCCAT+TGG | + | chr4.4:24854481-24854500 | MS.gene26425:CDS | 45.0% | |
| ! | GAATTTCTGGGAAGTTGCTG+CGG | - | chr4.4:24854378-24854397 | None:intergenic | 45.0% |
| ! | TCCAATGGCTTGAGTTGCAA+AGG | - | chr4.4:24854485-24854504 | None:intergenic | 45.0% |
| !! | GTTGCGGTTGATGGAATTTC+TGG | - | chr4.4:24854391-24854410 | None:intergenic | 45.0% |
| !! | TTTCTGAAATGGGGTTCGCT+TGG | + | chr4.4:24854422-24854441 | MS.gene26425:CDS | 45.0% |
| !! | AATATATATTAATTAACAAA+TGG | + | chr4.4:24856522-24856541 | MS.gene26425:intron | 5.0% |
| AACTGTTCGCACCTGATTGC+TGG | + | chr4.4:24855174-24855193 | MS.gene26425:intron | 50.0% | |
| AGGACGTCAAGATTCGCTAC+TGG | + | chr4.4:24854452-24854471 | MS.gene26425:CDS | 50.0% | |
| ATTCCTTTGTGGAGGGGAAG+TGG | + | chr4.4:24855061-24855080 | MS.gene26425:CDS | 50.0% | |
| GATCTGTTCGATTGCAAGGC+AGG | - | chr4.4:24855821-24855840 | None:intergenic | 50.0% | |
| TAACAAAGAAGGGGTCGTGG+TGG | + | chr4.4:24855794-24855813 | MS.gene26425:intron | 50.0% | |
| TAACCACTTCCCCTCCACAA+AGG | - | chr4.4:24855067-24855086 | None:intergenic | 50.0% | |
| TACCAGCAAGCTGACTGACT+CGG | + | chr4.4:24856773-24856792 | MS.gene26425:CDS | 50.0% | |
| TAGGCATGTTCAATGCTCGC+AGG | - | chr4.4:24856908-24856927 | None:intergenic | 50.0% | |
| !! | AAGGACTTGGTACTGATCCG+TGG | + | chr4.4:24856738-24856757 | MS.gene26425:CDS | 50.0% |
| !! | ACGCCGCACATGCTTTTTAC+TGG | + | chr4.4:24856636-24856655 | MS.gene26425:CDS | 50.0% |
| !! | AGGACTTGGTACTGATCCGT+GGG | + | chr4.4:24856739-24856758 | MS.gene26425:CDS | 50.0% |
| !! | GGACTTGGTACTGATCCGTG+GGG | + | chr4.4:24856740-24856759 | MS.gene26425:CDS | 55.0% |
| !! | TGACTGACTCGGAGGCGAAA+TGG | + | chr4.4:24856784-24856803 | MS.gene26425:CDS | 55.0% |
| CTCCGAGTCAGTCAGCTTGC+TGG | - | chr4.4:24856778-24856797 | None:intergenic | 60.0% | |
| CTCGGAGGCGAAATGGCTTG+TGG | + | chr4.4:24856791-24856810 | MS.gene26425:CDS | 60.0% | |
| GGGGTTCGCTTGGATTCTGC+AGG | + | chr4.4:24854432-24854451 | MS.gene26425:CDS | 60.0% | |
| TGCAGGGGAGTTGCGGTTGA+TGG | - | chr4.4:24854400-24854419 | None:intergenic | 60.0% | |
| !! | CAGCAAGCTGACTGACTCGG+AGG | + | chr4.4:24856776-24856795 | MS.gene26425:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 24854263 | 24856935 | 24854263 | ID=MS.gene26425 |
| chr4.4 | mRNA | 24854263 | 24856935 | 24854263 | ID=MS.gene26425.t1;Parent=MS.gene26425 |
| chr4.4 | exon | 24854263 | 24854571 | 24854263 | ID=MS.gene26425.t1.exon1;Parent=MS.gene26425.t1 |
| chr4.4 | CDS | 24854263 | 24854571 | 24854263 | ID=cds.MS.gene26425.t1;Parent=MS.gene26425.t1 |
| chr4.4 | exon | 24854879 | 24854958 | 24854879 | ID=MS.gene26425.t1.exon2;Parent=MS.gene26425.t1 |
| chr4.4 | CDS | 24854879 | 24854958 | 24854879 | ID=cds.MS.gene26425.t1;Parent=MS.gene26425.t1 |
| chr4.4 | exon | 24855048 | 24855106 | 24855048 | ID=MS.gene26425.t1.exon3;Parent=MS.gene26425.t1 |
| chr4.4 | CDS | 24855048 | 24855106 | 24855048 | ID=cds.MS.gene26425.t1;Parent=MS.gene26425.t1 |
| chr4.4 | exon | 24856631 | 24856935 | 24856631 | ID=MS.gene26425.t1.exon4;Parent=MS.gene26425.t1 |
| chr4.4 | CDS | 24856631 | 24856935 | 24856631 | ID=cds.MS.gene26425.t1;Parent=MS.gene26425.t1 |
| Gene Sequence |
| Protein sequence |
