Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98228.t1 | XP_013443378.1 | 95.6 | 321 | 14 | 0 | 1 | 321 | 1 | 321 | 1.20E-168 | 602.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98228.t1 | Q8N5M1 | 30.8 | 237 | 154 | 5 | 83 | 317 | 47 | 275 | 4.8e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98228.t1 | A0A072TKN2 | 95.6 | 321 | 14 | 0 | 1 | 321 | 1 | 321 | 8.6e-169 | 602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26606 | MS.gene98228 | PPI |
| MS.gene63685 | MS.gene98228 | PPI |
| MS.gene90723 | MS.gene98228 | PPI |
| MS.gene98228 | MS.gene47555 | PPI |
| MS.gene061619 | MS.gene98228 | PPI |
| MS.gene98228 | MS.gene26425 | PPI |
| MS.gene27265 | MS.gene98228 | PPI |
| MS.gene27003 | MS.gene98228 | PPI |
| MS.gene24232 | MS.gene98228 | PPI |
| MS.gene36891 | MS.gene98228 | PPI |
| MS.gene053439 | MS.gene98228 | PPI |
| MS.gene073885 | MS.gene98228 | PPI |
| MS.gene39553 | MS.gene98228 | PPI |
| MS.gene063717 | MS.gene98228 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98228.t1 | MTR_0018s0290 | 95.639 | 321 | 14 | 0 | 1 | 321 | 1 | 321 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98228.t1 | AT5G40660 | 67.197 | 314 | 98 | 2 | 7 | 319 | 14 | 323 | 3.86e-146 | 414 |
Find 71 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAATGCTCAATAATTT+TGG | 0.051463 | 7.1:+57632803 | None:intergenic |
| GAGAGGGTGGATAGAAATTT+AGG | 0.167626 | 7.1:+57634664 | None:intergenic |
| CACTGGTTGGAGTCAGAATT+TGG | 0.210951 | 7.1:-57631976 | MS.gene98228:CDS |
| TCATCACCAGTTGCATTTCT+TGG | 0.241027 | 7.1:-57631222 | MS.gene98228:CDS |
| ATATTGACATAGCTGATATT+AGG | 0.257910 | 7.1:-57631254 | MS.gene98228:CDS |
| TAGACTTGAAGAAGATTTAC+AGG | 0.269964 | 7.1:-57631752 | MS.gene98228:intron |
| CACCGGAGTGTCCGGCGTTT+TGG | 0.294846 | 7.1:-57634637 | MS.gene98228:CDS |
| TCGCCGCAGTCGGTGATTTC+AGG | 0.324473 | 7.1:+57634545 | None:intergenic |
| GACAGGTGGGGCCTTGTTGA+AGG | 0.349063 | 7.1:-57631285 | MS.gene98228:CDS |
| AGAGGGTGGATAGAAATTTA+GGG | 0.351887 | 7.1:+57634665 | None:intergenic |
| CTCCGCGGCGGCGGCCGACG+AGG | 0.401254 | 7.1:-57634614 | MS.gene98228:CDS |
| TTATCATTGTAGCAAATAGA+TGG | 0.410965 | 7.1:-57632897 | MS.gene98228:intron |
| GAAAACAGATGACTGTGAAT+TGG | 0.415426 | 7.1:-57631872 | MS.gene98228:CDS |
| TGCTTGCACTGCCTTGGAAA+GGG | 0.418660 | 7.1:-57632841 | MS.gene98228:CDS |
| TATTGACATAGCTGATATTA+GGG | 0.423099 | 7.1:-57631253 | MS.gene98228:CDS |
| TTTATGACGGGATCGATTGT+AGG | 0.424513 | 7.1:-57634484 | MS.gene98228:CDS |
| GAGACTTGCTTGCACTGCCT+TGG | 0.428917 | 7.1:-57632847 | MS.gene98228:CDS |
| CACGGCAAAATACTAAATCT+TGG | 0.446774 | 7.1:+57632769 | None:intergenic |
| CGGGATCGATTGTAGGGAAA+AGG | 0.450926 | 7.1:-57634477 | MS.gene98228:CDS |
| CTCATAAGAGGCATTGTAAA+GGG | 0.454432 | 7.1:+57632867 | None:intergenic |
| TAACGCTATTGCTGCTGAAT+GGG | 0.455806 | 7.1:-57634332 | MS.gene98228:CDS |
| CTCCTCGTCGGCCGCCGCCG+CGG | 0.460829 | 7.1:+57634612 | None:intergenic |
| CTAACGCTATTGCTGCTGAA+TGG | 0.471281 | 7.1:-57634333 | MS.gene98228:CDS |
| AGCTTAAGCGGTCTCTTAGC+AGG | 0.471890 | 7.1:+57634373 | None:intergenic |
| ATTAACAATTGCCATTGCAT+TGG | 0.483668 | 7.1:-57631815 | MS.gene98228:CDS |
| TTTGGTGGAAAGCAGGAAGA+TGG | 0.485177 | 7.1:-57631925 | MS.gene98228:CDS |
| CTTGCGAGTTCACTGTCATC+AGG | 0.496362 | 7.1:+57632744 | None:intergenic |
| TCTCAGCTCACCGGAGTGTC+CGG | 0.498918 | 7.1:-57634645 | MS.gene98228:CDS |
| AGGTGGGGCCTTGTTGAAGG+TGG | 0.501948 | 7.1:-57631282 | MS.gene98228:CDS |
| GACAAACCAAGAAATGCAAC+TGG | 0.502836 | 7.1:+57631216 | None:intergenic |
| GATCCCGTCATAAAAGAAAT+CGG | 0.504982 | 7.1:+57634493 | None:intergenic |
| TTGCTTGCACTGCCTTGGAA+AGG | 0.505924 | 7.1:-57632842 | MS.gene98228:CDS |
| GACACTCCGGTGAGCTGAGA+GGG | 0.508697 | 7.1:+57634648 | None:intergenic |
| TATCAGCTATGTCAATATCA+TGG | 0.523346 | 7.1:+57631259 | None:intergenic |
| TTGCCATTGCATTGGTGCAT+GGG | 0.523502 | 7.1:-57631807 | MS.gene98228:CDS |
| TTATGACGGGATCGATTGTA+GGG | 0.523541 | 7.1:-57634483 | MS.gene98228:CDS |
| TCTCATAAGAGGCATTGTAA+AGG | 0.532856 | 7.1:+57632866 | None:intergenic |
| CCGCCGCGGAGCCAAAACGC+CGG | 0.535070 | 7.1:+57634626 | None:intergenic |
| TGATCCTCTACTACACTGGT+TGG | 0.535520 | 7.1:-57631989 | MS.gene98228:CDS |
| GTGCAAGCAAGTCTCATAAG+AGG | 0.536748 | 7.1:+57632855 | None:intergenic |
| AGTTTACGCCTCGCCGCAGT+CGG | 0.550895 | 7.1:+57634535 | None:intergenic |
| AAGACAAGAGAAGCGGATGA+TGG | 0.554937 | 7.1:-57634439 | MS.gene98228:CDS |
| ATTGCCATTGCATTGGTGCA+TGG | 0.557107 | 7.1:-57631808 | MS.gene98228:CDS |
| AGCCAAAACGCCGGACACTC+CGG | 0.558989 | 7.1:+57634635 | None:intergenic |
| ATCATCTTTCACATTCTCAT+CGG | 0.566012 | 7.1:-57634584 | MS.gene98228:CDS |
| ATCTTTCACATTCTCATCGG+AGG | 0.570107 | 7.1:-57634581 | MS.gene98228:CDS |
| AAGCGGATGATGGTAATGGT+TGG | 0.574002 | 7.1:-57634429 | MS.gene98228:CDS |
| AGAGAAGCGGATGATGGTAA+TGG | 0.574159 | 7.1:-57634433 | MS.gene98228:CDS |
| AAATTGATCCTCTACTACAC+TGG | 0.578145 | 7.1:-57631993 | MS.gene98228:CDS |
| GCGTTAGCAAGAGCAACAGT+AGG | 0.579760 | 7.1:+57634349 | None:intergenic |
| GACTCCAACCAGTGTAGTAG+AGG | 0.581369 | 7.1:+57631985 | None:intergenic |
| TGGAAAGGGTTCCTGTGACA+AGG | 0.585069 | 7.1:-57632827 | MS.gene98228:CDS |
| TATCCACCCTCTCAGCTCAC+CGG | 0.585445 | 7.1:-57634654 | MS.gene98228:CDS |
| CCGCAGTCGGTGATTTCAGG+TGG | 0.590652 | 7.1:+57634548 | None:intergenic |
| TTTCCCATGCACCAATGCAA+TGG | 0.595226 | 7.1:+57631804 | None:intergenic |
| AGAAGTGAAGACAAGAGAAG+CGG | 0.606025 | 7.1:-57634446 | MS.gene98228:CDS |
| GCAGGAAGATGGTCTTGTGA+TGG | 0.606259 | 7.1:-57631914 | MS.gene98228:CDS |
| GAGGCGTAAACTGTCGTCGT+CGG | 0.606857 | 7.1:-57634524 | MS.gene98228:CDS |
| TGACAGTGAACTCGCAAGCA+TGG | 0.609118 | 7.1:-57632739 | MS.gene98228:CDS |
| TGTCACAGGAACCCTTTCCA+AGG | 0.620314 | 7.1:+57632830 | None:intergenic |
| GAACTCGCAAGCATGGTCCA+TGG | 0.622464 | 7.1:-57632732 | MS.gene98228:intron |
| ACTCCGGTGAGCTGAGAGGG+TGG | 0.626180 | 7.1:+57634651 | None:intergenic |
| TATCATGGCCACCTTCAACA+AGG | 0.639788 | 7.1:+57631274 | None:intergenic |
| GCAACAGTAGGAAGCTTAAG+CGG | 0.640307 | 7.1:+57634361 | None:intergenic |
| TGCTGCAATAGCATCAATTG+CGG | 0.640444 | 7.1:+57631849 | None:intergenic |
| GCATGGGAAATTGCAAATTG+AGG | 0.640793 | 7.1:-57631791 | MS.gene98228:CDS |
| GTTCACTGTCATCAGGAGCA+CGG | 0.645009 | 7.1:+57632751 | None:intergenic |
| GGACACTCCGGTGAGCTGAG+AGG | 0.655400 | 7.1:+57634647 | None:intergenic |
| CCACCTGAAATCACCGACTG+CGG | 0.657677 | 7.1:-57634548 | MS.gene98228:CDS |
| AGATGATGACTGCTCCTCGT+CGG | 0.687316 | 7.1:+57634600 | None:intergenic |
| TGAAATCACCGACTGCGGCG+AGG | 0.688123 | 7.1:-57634543 | MS.gene98228:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAAAATTTGTGA+AGG | + | chr7.1:57632821-57632840 | None:intergenic | 10.0% |
| !!! | AAGTTATTTTTTTTTTCATT+AGG | - | chr7.1:57631692-57631711 | MS.gene98228:intron | 10.0% |
| !!! | ACTTTATATTCTGTTTTATA+TGG | - | chr7.1:57632933-57632952 | MS.gene98228:intron | 15.0% |
| !!! | ACTTTTAACATATCAATTTT+AGG | - | chr7.1:57633357-57633376 | MS.gene98228:intron | 15.0% |
| !!! | ATTAATTCATTTTTTCATGT+TGG | - | chr7.1:57633660-57633679 | MS.gene98228:intron | 15.0% |
| !! | AAATTATTCTTGATGAATTG+AGG | - | chr7.1:57632846-57632865 | MS.gene98228:CDS | 20.0% |
| !! | AAGTTATGATCAAATACAAT+CGG | - | chr7.1:57632713-57632732 | MS.gene98228:intron | 20.0% |
| !! | ATTTAGAAAAGTGATATTGA+TGG | - | chr7.1:57633413-57633432 | MS.gene98228:intron | 20.0% |
| !!! | ATCAAATGCTCAATAATTTT+GGG | + | chr7.1:57633108-57633127 | None:intergenic | 20.0% |
| !!! | CTTTTAAATATTTCCAATGA+CGG | + | chr7.1:57632900-57632919 | None:intergenic | 20.0% |
| !!! | TATTCTGTTTTATATGGTTA+TGG | - | chr7.1:57632939-57632958 | MS.gene98228:intron | 20.0% |
| !!! | TGTGAAGGTTTTAATAAAAA+TGG | + | chr7.1:57632806-57632825 | None:intergenic | 20.0% |
| !!! | TTAACATATCAATTTTAGGA+TGG | - | chr7.1:57633361-57633380 | MS.gene98228:intron | 20.0% |
| ! | AGATATAGAGATTAATGAGT+TGG | - | chr7.1:57632152-57632171 | MS.gene98228:intron | 25.0% |
| ! | AGGATTGTAAGCTAATATTT+AGG | - | chr7.1:57632866-57632885 | MS.gene98228:CDS | 25.0% |
| ! | AGGTTAGTGTAAATGAAATT+TGG | - | chr7.1:57631712-57631731 | MS.gene98228:intron | 25.0% |
| ! | AGTACATGAATGTGAATTAT+AGG | - | chr7.1:57634281-57634300 | MS.gene98228:intron | 25.0% |
| ! | ATATTGACATAGCTGATATT+AGG | - | chr7.1:57634655-57634674 | MS.gene98228:CDS | 25.0% |
| ! | CACAAGATAAAATAGTAGTA+AGG | - | chr7.1:57632049-57632068 | MS.gene98228:intron | 25.0% |
| ! | CATCAAAAACATTATTGTCT+TGG | - | chr7.1:57632762-57632781 | MS.gene98228:CDS | 25.0% |
| ! | CGTCATTGGAAATATTTAAA+AGG | - | chr7.1:57632898-57632917 | MS.gene98228:intron | 25.0% |
| ! | GTAGATAAGTTAATCAAAAG+AGG | - | chr7.1:57632369-57632388 | MS.gene98228:intron | 25.0% |
| ! | TAAAGCTAATTGAAAAGTCA+AGG | - | chr7.1:57632646-57632665 | MS.gene98228:intron | 25.0% |
| ! | TAAGGTTTCTAACAGAAAAT+AGG | + | chr7.1:57634435-57634454 | None:intergenic | 25.0% |
| ! | TATTGACATAGCTGATATTA+GGG | - | chr7.1:57634656-57634675 | MS.gene98228:CDS | 25.0% |
| ! | TTATCATTGTAGCAAATAGA+TGG | - | chr7.1:57633012-57633031 | MS.gene98228:intron | 25.0% |
| !! | AGAGAAGAATTTTATGATGT+GGG | - | chr7.1:57634352-57634371 | MS.gene98228:CDS | 25.0% |
| !! | CATCAAATGCTCAATAATTT+TGG | + | chr7.1:57633109-57633128 | None:intergenic | 25.0% |
| !! | GTTTCTGTTATAGTTTTTCT+AGG | + | chr7.1:57632123-57632142 | None:intergenic | 25.0% |
| !! | TAGAGAAGAATTTTATGATG+TGG | - | chr7.1:57634351-57634370 | MS.gene98228:CDS | 25.0% |
| !! | TCTGTTATCCTAAAAAGTAT+TGG | + | chr7.1:57633823-57633842 | None:intergenic | 25.0% |
| !!! | AAAAGTGATATTGATGGTTT+TGG | - | chr7.1:57633419-57633438 | MS.gene98228:intron | 25.0% |
| !!! | AAAGTGATATTGATGGTTTT+GGG | - | chr7.1:57633420-57633439 | MS.gene98228:intron | 25.0% |
| !!! | AATATTTTAGCTTTACCTAC+TGG | - | chr7.1:57633760-57633779 | MS.gene98228:intron | 25.0% |
| !!! | ATTTTTTCATGTTGGCTATA+TGG | - | chr7.1:57633668-57633687 | MS.gene98228:intron | 25.0% |
| !!! | GATTTTCTATTAGTTTGCTT+AGG | - | chr7.1:57633606-57633625 | MS.gene98228:intron | 25.0% |
| AAGGATAGTCATATCACTAA+AGG | - | chr7.1:57632087-57632106 | MS.gene98228:intron | 30.0% | |
| AATAATTCTATCACTCCAGT+AGG | + | chr7.1:57633778-57633797 | None:intergenic | 30.0% | |
| AATATTTCCAATGACGGTTA+AGG | + | chr7.1:57632894-57632913 | None:intergenic | 30.0% | |
| AATGTGAATTATAGGACTCT+TGG | - | chr7.1:57634289-57634308 | MS.gene98228:intron | 30.0% | |
| AATTATAGGACTCTTGGTTT+GGG | - | chr7.1:57634295-57634314 | MS.gene98228:intron | 30.0% | |
| ATATTTCCAATGACGGTTAA+GGG | + | chr7.1:57632893-57632912 | None:intergenic | 30.0% | |
| ATCATCTTTCACATTCTCAT+CGG | - | chr7.1:57631325-57631344 | MS.gene98228:intron | 30.0% | |
| ATCTTCTCTCTATGACAATA+AGG | - | chr7.1:57633534-57633553 | MS.gene98228:intron | 30.0% | |
| ATTAACAATTGCCATTGCAT+TGG | - | chr7.1:57634094-57634113 | MS.gene98228:intron | 30.0% | |
| GAAATTGTTAGAATATGCGA+GGG | - | chr7.1:57634374-57634393 | MS.gene98228:CDS | 30.0% | |
| TAAATAGTTTCCATTGCCAT+AGG | + | chr7.1:57633458-57633477 | None:intergenic | 30.0% | |
| TACCATATTAAGCTTAGTTG+CGG | + | chr7.1:57634329-57634348 | None:intergenic | 30.0% | |
| TAGACTTGAAGAAGATTTAC+AGG | - | chr7.1:57634157-57634176 | MS.gene98228:intron | 30.0% | |
| TATCAGCTATGTCAATATCA+TGG | + | chr7.1:57634653-57634672 | None:intergenic | 30.0% | |
| TATTTGATCATAACTTTCCG+TGG | + | chr7.1:57632709-57632728 | None:intergenic | 30.0% | |
| TCTCTCTTCTCTCTTAATTT+GGG | - | chr7.1:57634546-57634565 | MS.gene98228:CDS | 30.0% | |
| TGAATAATCAGCTAAATTGC+AGG | - | chr7.1:57633577-57633596 | MS.gene98228:intron | 30.0% | |
| TGCTTATTATATGAGCTGTT+AGG | - | chr7.1:57632011-57632030 | MS.gene98228:CDS | 30.0% | |
| TTATATGGTTATGGTTGCAT+AGG | - | chr7.1:57632948-57632967 | MS.gene98228:intron | 30.0% | |
| TTCTCTCTTCTCTCTTAATT+TGG | - | chr7.1:57634545-57634564 | MS.gene98228:CDS | 30.0% | |
| ! | AAGTCTTATGTCACTAAGTA+GGG | + | chr7.1:57632213-57632232 | None:intergenic | 30.0% |
| ! | ATGCTTTACCAAAACTTGTT+TGG | + | chr7.1:57631911-57631930 | None:intergenic | 30.0% |
| ! | ATGTCTTCATTCTCTTTTTC+AGG | - | chr7.1:57634599-57634618 | MS.gene98228:CDS | 30.0% |
| ! | TAATGAGTTGGACTGAATTA+TGG | - | chr7.1:57632164-57632183 | MS.gene98228:intron | 30.0% |
| !! | AAGTGATATTGATGGTTTTG+GGG | - | chr7.1:57633421-57633440 | MS.gene98228:intron | 30.0% |
| !! | CTTGTTGACCAATACTTTTT+AGG | - | chr7.1:57633812-57633831 | MS.gene98228:intron | 30.0% |
| AAAAAGCTGGAGTATACAAC+AGG | + | chr7.1:57633966-57633985 | None:intergenic | 35.0% | |
| AAAAGAGAAGACTGTCTCTA+AGG | + | chr7.1:57634453-57634472 | None:intergenic | 35.0% | |
| AAAATCCTACCACATGATGA+AGG | + | chr7.1:57632419-57632438 | None:intergenic | 35.0% | |
| AAATCCTACCACATGATGAA+GGG | + | chr7.1:57632418-57632437 | None:intergenic | 35.0% | |
| AAATTGATCCTCTACTACAC+TGG | - | chr7.1:57633916-57633935 | MS.gene98228:intron | 35.0% | |
| AAGGAGAGTAGATTAGATGA+AGG | - | chr7.1:57632068-57632087 | MS.gene98228:intron | 35.0% | |
| AATAAATCTAAGTTGCCTCG+AGG | - | chr7.1:57632497-57632516 | MS.gene98228:intron | 35.0% | |
| ACCATATTAAGCTTAGTTGC+GGG | + | chr7.1:57634328-57634347 | None:intergenic | 35.0% | |
| ACTAAGTAGGGTCAGTTATA+TGG | + | chr7.1:57632201-57632220 | None:intergenic | 35.0% | |
| AGAGGGTGGATAGAAATTTA+GGG | + | chr7.1:57631247-57631266 | None:intergenic | 35.0% | |
| ATAAATCTAAGTTGCCTCGA+GGG | - | chr7.1:57632498-57632517 | MS.gene98228:intron | 35.0% | |
| ATTGAGATCAGAGATCTGAA+AGG | + | chr7.1:57633228-57633247 | None:intergenic | 35.0% | |
| CAATAACTAACACCATACCA+TGG | + | chr7.1:57633197-57633216 | None:intergenic | 35.0% | |
| CACGGCAAAATACTAAATCT+TGG | + | chr7.1:57633143-57633162 | None:intergenic | 35.0% | |
| CTACTTAGTGACATAAGACT+TGG | - | chr7.1:57632212-57632231 | MS.gene98228:intron | 35.0% | |
| CTGAATGGGATTATCAAGTA+TGG | - | chr7.1:57631591-57631610 | MS.gene98228:intron | 35.0% | |
| CTGAGTATACTGAACTTGAA+GGG | - | chr7.1:57633281-57633300 | MS.gene98228:intron | 35.0% | |
| GAAAACAGATGACTGTGAAT+TGG | - | chr7.1:57634037-57634056 | MS.gene98228:intron | 35.0% | |
| GAAGAAGATTTACAGGTACT+TGG | - | chr7.1:57634164-57634183 | MS.gene98228:intron | 35.0% | |
| GAATTATAGGACTCTTGGTT+TGG | - | chr7.1:57634294-57634313 | MS.gene98228:intron | 35.0% | |
| GATCCCGTCATAAAAGAAAT+CGG | + | chr7.1:57631419-57631438 | None:intergenic | 35.0% | |
| GCATAGCTCATTTACCTATA+TGG | - | chr7.1:57631927-57631946 | MS.gene98228:CDS | 35.0% | |
| GGAAATTGTTAGAATATGCG+AGG | - | chr7.1:57634373-57634392 | MS.gene98228:CDS | 35.0% | |
| GGGAAAATATATGTTGAGTG+AGG | - | chr7.1:57632459-57632478 | MS.gene98228:intron | 35.0% | |
| TAATCAAAAGAGGTCCTAAG+TGG | - | chr7.1:57632379-57632398 | MS.gene98228:intron | 35.0% | |
| TAGAATATGCGAGGGAATAT+AGG | - | chr7.1:57634382-57634401 | MS.gene98228:CDS | 35.0% | |
| TGATTCATCTGTGCTTCATT+GGG | - | chr7.1:57631621-57631640 | MS.gene98228:intron | 35.0% | |
| TTGATTCATCTGTGCTTCAT+TGG | - | chr7.1:57631620-57631639 | MS.gene98228:intron | 35.0% | |
| ! | ATGATTTTCAGAAAGATGCG+TGG | - | chr7.1:57633850-57633869 | MS.gene98228:intron | 35.0% |
| ! | CAAGTCTTATGTCACTAAGT+AGG | + | chr7.1:57632214-57632233 | None:intergenic | 35.0% |
| ! | CATAGATGCCAAACAAGTTT+TGG | - | chr7.1:57631900-57631919 | MS.gene98228:CDS | 35.0% |
| ! | GAGGATCAATTTTCTCAACT+TGG | + | chr7.1:57633908-57633927 | None:intergenic | 35.0% |
| !! | ACCTATATGGTGTTGCATTA+AGG | - | chr7.1:57631940-57631959 | MS.gene98228:CDS | 35.0% |
| !! | CTCATAAGAGGCATTGTAAA+GGG | + | chr7.1:57633045-57633064 | None:intergenic | 35.0% |
| !! | TCTCATAAGAGGCATTGTAA+AGG | + | chr7.1:57633046-57633065 | None:intergenic | 35.0% |
| !!! | ATGCCGATTTCTTTTATGAC+GGG | - | chr7.1:57631413-57631432 | MS.gene98228:intron | 35.0% |
| !!! | GATGCCGATTTCTTTTATGA+CGG | - | chr7.1:57631412-57631431 | MS.gene98228:intron | 35.0% |
| !!! | GTTGTATACTCCAGCTTTTT+TGG | - | chr7.1:57633966-57633985 | MS.gene98228:intron | 35.0% |
| !!! | TCTTCATTCTCTTTTTCAGG+TGG | - | chr7.1:57634602-57634621 | MS.gene98228:CDS | 35.0% |
| AATAACAGCTTCCACAGATG+AGG | + | chr7.1:57633735-57633754 | None:intergenic | 40.0% | |
| ACTAAAGTCCCTTCATCATG+TGG | - | chr7.1:57632407-57632426 | MS.gene98228:intron | 40.0% | |
| AGAAGTGAAGACAAGAGAAG+CGG | - | chr7.1:57631463-57631482 | MS.gene98228:intron | 40.0% | |
| ATCCCAGAGAAAATGCTCAT+CGG | + | chr7.1:57634476-57634495 | None:intergenic | 40.0% | |
| ATCTTTCACATTCTCATCGG+AGG | - | chr7.1:57631328-57631347 | MS.gene98228:intron | 40.0% | |
| CCATATTAAGCTTAGTTGCG+GGG | + | chr7.1:57634327-57634346 | None:intergenic | 40.0% | |
| CTTCATGTTTACCTCATCTG+TGG | - | chr7.1:57633721-57633740 | MS.gene98228:intron | 40.0% | |
| GACAAACCAAGAAATGCAAC+TGG | + | chr7.1:57634696-57634715 | None:intergenic | 40.0% | |
| GACTTTAGTACCTACCACTT+AGG | + | chr7.1:57632396-57632415 | None:intergenic | 40.0% | |
| GAGAGGGTGGATAGAAATTT+AGG | + | chr7.1:57631248-57631267 | None:intergenic | 40.0% | |
| GCATGGGAAATTGCAAATTG+AGG | - | chr7.1:57634118-57634137 | MS.gene98228:intron | 40.0% | |
| GCCTTAATGCAACACCATAT+AGG | + | chr7.1:57631944-57631963 | None:intergenic | 40.0% | |
| GCTGAGTATACTGAACTTGA+AGG | - | chr7.1:57633280-57633299 | MS.gene98228:intron | 40.0% | |
| GGTGCAGTGATTACTATACA+GGG | - | chr7.1:57633498-57633517 | MS.gene98228:intron | 40.0% | |
| GTATAGTAATCACTGCACCA+AGG | + | chr7.1:57633497-57633516 | None:intergenic | 40.0% | |
| TAAATCTAAGTTGCCTCGAG+GGG | - | chr7.1:57632499-57632518 | MS.gene98228:intron | 40.0% | |
| TAACGCTATTGCTGCTGAAT+GGG | - | chr7.1:57631577-57631596 | MS.gene98228:intron | 40.0% | |
| TACTCAGCATGTATTTCGTC+AGG | + | chr7.1:57633268-57633287 | None:intergenic | 40.0% | |
| TCATCACCAGTTGCATTTCT+TGG | - | chr7.1:57634687-57634706 | MS.gene98228:CDS | 40.0% | |
| TGCTGCAATAGCATCAATTG+CGG | + | chr7.1:57634063-57634082 | None:intergenic | 40.0% | |
| TGCTTAGGTCTATATGTCTC+AGG | - | chr7.1:57633621-57633640 | MS.gene98228:intron | 40.0% | |
| TGGTGCAGTGATTACTATAC+AGG | - | chr7.1:57633497-57633516 | MS.gene98228:intron | 40.0% | |
| TGTATTTCGTCAGGCAATCA+CGG | + | chr7.1:57633259-57633278 | None:intergenic | 40.0% | |
| TTAGGTCTATATGTCTCAGG+AGG | - | chr7.1:57633624-57633643 | MS.gene98228:intron | 40.0% | |
| TTGTTTGTCCAACTCCAAAC+AGG | + | chr7.1:57631966-57631985 | None:intergenic | 40.0% | |
| ! | AAGTTCTACAGTTCTGACCT+TGG | - | chr7.1:57633477-57633496 | MS.gene98228:intron | 40.0% |
| ! | ATTTTCCCATACACATAGCC+AGG | + | chr7.1:57632447-57632466 | None:intergenic | 40.0% |
| ! | TTATGACGGGATCGATTGTA+GGG | - | chr7.1:57631426-57631445 | MS.gene98228:intron | 40.0% |
| ! | TTCCGATGAGCATTTTCTCT+GGG | - | chr7.1:57634471-57634490 | MS.gene98228:CDS | 40.0% |
| ! | TTTATGACGGGATCGATTGT+AGG | - | chr7.1:57631425-57631444 | MS.gene98228:intron | 40.0% |
| ! | TTTCCGATGAGCATTTTCTC+TGG | - | chr7.1:57634470-57634489 | MS.gene98228:CDS | 40.0% |
| ! | TTTTCCCATACACATAGCCA+GGG | + | chr7.1:57632446-57632465 | None:intergenic | 40.0% |
| !! | ATAATTTTGGGCCTTGTCAC+AGG | + | chr7.1:57633096-57633115 | None:intergenic | 40.0% |
| !! | TCTTGGCATATTTGCTGTTG+CGG | - | chr7.1:57632779-57632798 | MS.gene98228:CDS | 40.0% |
| !!! | ATTCTCTTTTTCAGGTGGAC+AGG | - | chr7.1:57634607-57634626 | MS.gene98228:CDS | 40.0% |
| !!! | ATTGATGGTTTTGGGGTCAT+AGG | - | chr7.1:57633428-57633447 | MS.gene98228:intron | 40.0% |
| !!! | CATTTTCTCTGGGATTACAC+GGG | - | chr7.1:57634481-57634500 | MS.gene98228:CDS | 40.0% |
| !!! | GCATTTTCTCTGGGATTACA+CGG | - | chr7.1:57634480-57634499 | MS.gene98228:CDS | 40.0% |
| !!! | GTATACTCCAGCTTTTTTGG+TGG | - | chr7.1:57633969-57633988 | MS.gene98228:intron | 40.0% |
| AAGACAAGAGAAGCGGATGA+TGG | - | chr7.1:57631470-57631489 | MS.gene98228:intron | 45.0% | |
| AAGTCCCTTCATCATGTGGT+AGG | - | chr7.1:57632411-57632430 | MS.gene98228:intron | 45.0% | |
| AATATCCGTGCTTCACGGTT+TGG | + | chr7.1:57631756-57631775 | None:intergenic | 45.0% | |
| AGTTGCATGTGGGGATACTT+TGG | - | chr7.1:57632532-57632551 | MS.gene98228:intron | 45.0% | |
| CAAAAGAGGTCCTAAGTGGT+AGG | - | chr7.1:57632383-57632402 | MS.gene98228:intron | 45.0% | |
| CCCCGCAACTAAGCTTAATA+TGG | - | chr7.1:57634324-57634343 | MS.gene98228:CDS | 45.0% | |
| CTAACGCTATTGCTGCTGAA+TGG | - | chr7.1:57631576-57631595 | MS.gene98228:intron | 45.0% | |
| CTATCCCTGGCTATGTGTAT+GGG | - | chr7.1:57632439-57632458 | MS.gene98228:intron | 45.0% | |
| CTGCTTTCCACCAAAAAAGC+TGG | + | chr7.1:57633979-57633998 | None:intergenic | 45.0% | |
| GCAACAGTAGGAAGCTTAAG+CGG | + | chr7.1:57631551-57631570 | None:intergenic | 45.0% | |
| GCATTGAAACCTCACTACCA+CGG | - | chr7.1:57632689-57632708 | MS.gene98228:intron | 45.0% | |
| GTGCAAGCAAGTCTCATAAG+AGG | + | chr7.1:57633057-57633076 | None:intergenic | 45.0% | |
| GTGTCAATATCCGTGCTTCA+CGG | + | chr7.1:57631761-57631780 | None:intergenic | 45.0% | |
| GTGTTGCATTAAGGCCTGTT+TGG | - | chr7.1:57631949-57631968 | MS.gene98228:CDS | 45.0% | |
| TATCATGGCCACCTTCAACA+AGG | + | chr7.1:57634638-57634657 | None:intergenic | 45.0% | |
| TCTATCCCTGGCTATGTGTA+TGG | - | chr7.1:57632438-57632457 | MS.gene98228:intron | 45.0% | |
| TGAAGCACGGATATTGACAC+CGG | - | chr7.1:57631761-57631780 | MS.gene98228:CDS | 45.0% | |
| TGATCCTCTACTACACTGGT+TGG | - | chr7.1:57633920-57633939 | MS.gene98228:intron | 45.0% | |
| TTAGGTCCCTTAACCGTCAT+TGG | - | chr7.1:57632884-57632903 | MS.gene98228:CDS | 45.0% | |
| TTTCCCATGCACCAATGCAA+TGG | + | chr7.1:57634108-57634127 | None:intergenic | 45.0% | |
| TTTGGTGGAAAGCAGGAAGA+TGG | - | chr7.1:57633984-57634003 | MS.gene98228:intron | 45.0% | |
| ! | AGAGAAGCGGATGATGGTAA+TGG | - | chr7.1:57631476-57631495 | MS.gene98228:intron | 45.0% |
| ! | ATACTGAACTTGAAGGGTGC+TGG | - | chr7.1:57633287-57633306 | MS.gene98228:intron | 45.0% |
| ! | ATTGCCATTGCATTGGTGCA+TGG | - | chr7.1:57634101-57634120 | MS.gene98228:intron | 45.0% |
| ! | CACTGGTTGGAGTCAGAATT+TGG | - | chr7.1:57633933-57633952 | MS.gene98228:intron | 45.0% |
| ! | CATAACTTTCCGTGGTAGTG+AGG | + | chr7.1:57632701-57632720 | None:intergenic | 45.0% |
| ! | CATTAAGGCCTGTTTGGAGT+TGG | - | chr7.1:57631955-57631974 | MS.gene98228:CDS | 45.0% |
| ! | GTGGTAGGATTTTCTATCCC+TGG | - | chr7.1:57632426-57632445 | MS.gene98228:intron | 45.0% |
| ! | TTGCCATTGCATTGGTGCAT+GGG | - | chr7.1:57634102-57634121 | MS.gene98228:intron | 45.0% |
| !! | AAGCGGATGATGGTAATGGT+TGG | - | chr7.1:57631480-57631499 | MS.gene98228:intron | 45.0% |
| !! | TACTGAACTTGAAGGGTGCT+GGG | - | chr7.1:57633288-57633307 | MS.gene98228:intron | 45.0% |
| !!! | CAGCTTTTTTGGTGGAAAGC+AGG | - | chr7.1:57633977-57633996 | MS.gene98228:intron | 45.0% |
| !!! | TCTTTTTCAGGTGGACAGGT+GGG | - | chr7.1:57634611-57634630 | MS.gene98228:CDS | 45.0% |
| !! | AAAAAATGAATTAATATTTA+TGG | + | chr7.1:57633655-57633674 | None:intergenic | 5.0% |
| AGATGATGACTGCTCCTCGT+CGG | + | chr7.1:57631312-57631331 | None:intergenic | 50.0% | |
| AGCTTAAGCGGTCTCTTAGC+AGG | + | chr7.1:57631539-57631558 | None:intergenic | 50.0% | |
| ATAGGAGCAGAGAGGAGAGT+GGG | - | chr7.1:57634400-57634419 | MS.gene98228:CDS | 50.0% | |
| CATAGGCTTGCCTATGGCAA+TGG | - | chr7.1:57633445-57633464 | MS.gene98228:intron | 50.0% | |
| CGGGATCGATTGTAGGGAAA+AGG | - | chr7.1:57631432-57631451 | MS.gene98228:intron | 50.0% | |
| CTTGCGAGTTCACTGTCATC+AGG | + | chr7.1:57633168-57633187 | None:intergenic | 50.0% | |
| GAATGCCAAACCGTGAAGCA+CGG | - | chr7.1:57631748-57631767 | MS.gene98228:intron | 50.0% | |
| GACTCCAACCAGTGTAGTAG+AGG | + | chr7.1:57633927-57633946 | None:intergenic | 50.0% | |
| GAGGGAATATAGGAGCAGAG+AGG | - | chr7.1:57634392-57634411 | MS.gene98228:CDS | 50.0% | |
| GCACAGACACTCCTCGAATT+AGG | + | chr7.1:57631878-57631897 | None:intergenic | 50.0% | |
| GCGTTAGCAAGAGCAACAGT+AGG | + | chr7.1:57631563-57631582 | None:intergenic | 50.0% | |
| GTTCACTGTCATCAGGAGCA+CGG | + | chr7.1:57633161-57633180 | None:intergenic | 50.0% | |
| TAAGCTTAGTTGCGGGGCTT+AGG | + | chr7.1:57634321-57634340 | None:intergenic | 50.0% | |
| TATAGGAGCAGAGAGGAGAG+TGG | - | chr7.1:57634399-57634418 | MS.gene98228:CDS | 50.0% | |
| TCTCAACTTGGCGTTCTGCA+AGG | + | chr7.1:57633896-57633915 | None:intergenic | 50.0% | |
| TGACAGTGAACTCGCAAGCA+TGG | - | chr7.1:57633170-57633189 | MS.gene98228:intron | 50.0% | |
| TGCTTGCACTGCCTTGGAAA+GGG | - | chr7.1:57633068-57633087 | MS.gene98228:intron | 50.0% | |
| TGGAAAGGGTTCCTGTGACA+AGG | - | chr7.1:57633082-57633101 | MS.gene98228:intron | 50.0% | |
| TGTCACAGGAACCCTTTCCA+AGG | + | chr7.1:57633082-57633101 | None:intergenic | 50.0% | |
| TTGCTTGCACTGCCTTGGAA+AGG | - | chr7.1:57633067-57633086 | MS.gene98228:intron | 50.0% | |
| ! | AATCGGTTCAGCTGCAGTTG+GGG | - | chr7.1:57632730-57632749 | MS.gene98228:intron | 50.0% |
| ! | ACAATCGGTTCAGCTGCAGT+TGG | - | chr7.1:57632728-57632747 | MS.gene98228:intron | 50.0% |
| ! | CAATCGGTTCAGCTGCAGTT+GGG | - | chr7.1:57632729-57632748 | MS.gene98228:intron | 50.0% |
| !! | ACTGAACTTGAAGGGTGCTG+GGG | - | chr7.1:57633289-57633308 | MS.gene98228:intron | 50.0% |
| !! | GCAGGAAGATGGTCTTGTGA+TGG | - | chr7.1:57633995-57634014 | MS.gene98228:intron | 50.0% |
| !!! | CTCTTTTTCAGGTGGACAGG+TGG | - | chr7.1:57634610-57634629 | MS.gene98228:CDS | 50.0% |
| !!! | CTTTTTCAGGTGGACAGGTG+GGG | - | chr7.1:57634612-57634631 | MS.gene98228:CDS | 50.0% |
| AAGTGTCACGTGTCCGACAC+GGG | - | chr7.1:57631846-57631865 | MS.gene98228:CDS | 55.0% | |
| AATTAGGCGTGTCCCCGTGT+CGG | + | chr7.1:57631862-57631881 | None:intergenic | 55.0% | |
| CAAGTGTCACGTGTCCGACA+CGG | - | chr7.1:57631845-57631864 | MS.gene98228:CDS | 55.0% | |
| CGCAAGCATGGTCCATGGTA+TGG | - | chr7.1:57633182-57633201 | MS.gene98228:intron | 55.0% | |
| CGGATATTGACACCGGACAC+TGG | - | chr7.1:57631768-57631787 | MS.gene98228:CDS | 55.0% | |
| CTAGCGTCGCAGTTGCATGT+GGG | - | chr7.1:57632522-57632541 | MS.gene98228:intron | 55.0% | |
| GAACTCGCAAGCATGGTCCA+TGG | - | chr7.1:57633177-57633196 | MS.gene98228:intron | 55.0% | |
| GAGGCGTAAACTGTCGTCGT+CGG | - | chr7.1:57631385-57631404 | MS.gene98228:intron | 55.0% | |
| TAGCGTCGCAGTTGCATGTG+GGG | - | chr7.1:57632523-57632542 | MS.gene98228:intron | 55.0% | |
| TAGGAGCAGAGAGGAGAGTG+GGG | - | chr7.1:57634401-57634420 | MS.gene98228:CDS | 55.0% | |
| TATCCACCCTCTCAGCTCAC+CGG | - | chr7.1:57631255-57631274 | MS.gene98228:CDS | 55.0% | |
| TGGGGTCATAGGCTTGCCTA+TGG | - | chr7.1:57633439-57633458 | MS.gene98228:intron | 55.0% | |
| TGTGTCAGCATGCCAGTGTC+CGG | + | chr7.1:57631783-57631802 | None:intergenic | 55.0% | |
| ! | CCACCTGAAATCACCGACTG+CGG | - | chr7.1:57631361-57631380 | MS.gene98228:intron | 55.0% |
| ! | GAGACTTGCTTGCACTGCCT+TGG | - | chr7.1:57633062-57633081 | MS.gene98228:intron | 55.0% |
| ACGGGGACACGCCTAATTCG+AGG | - | chr7.1:57631864-57631883 | MS.gene98228:CDS | 60.0% | |
| AGCCAAAACGCCGGACACTC+CGG | + | chr7.1:57631277-57631296 | None:intergenic | 60.0% | |
| AGCTGCAGTTGGGGTCGCAA+AGG | - | chr7.1:57632739-57632758 | MS.gene98228:CDS | 60.0% | |
| AGGAGCAGAGAGGAGAGTGG+GGG | - | chr7.1:57634402-57634421 | MS.gene98228:CDS | 60.0% | |
| AGTGTCACGTGTCCGACACG+GGG | - | chr7.1:57631847-57631866 | MS.gene98228:CDS | 60.0% | |
| AGTTTACGCCTCGCCGCAGT+CGG | + | chr7.1:57631377-57631396 | None:intergenic | 60.0% | |
| CCGCAGTCGGTGATTTCAGG+TGG | + | chr7.1:57631364-57631383 | None:intergenic | 60.0% | |
| GACACTCCGGTGAGCTGAGA+GGG | + | chr7.1:57631264-57631283 | None:intergenic | 60.0% | |
| GCTAGCGTCGCAGTTGCATG+TGG | - | chr7.1:57632521-57632540 | MS.gene98228:intron | 60.0% | |
| TCGCCGCAGTCGGTGATTTC+AGG | + | chr7.1:57631367-57631386 | None:intergenic | 60.0% | |
| ! | TCTCAGCTCACCGGAGTGTC+CGG | - | chr7.1:57631264-57631283 | MS.gene98228:CDS | 60.0% |
| ! | TGAAATCACCGACTGCGGCG+AGG | - | chr7.1:57631366-57631385 | MS.gene98228:intron | 60.0% |
| !! | AGGTGGGGCCTTGTTGAAGG+TGG | - | chr7.1:57634627-57634646 | MS.gene98228:CDS | 60.0% |
| !! | GACAGGTGGGGCCTTGTTGA+AGG | - | chr7.1:57634624-57634643 | MS.gene98228:CDS | 60.0% |
| ACTCCGGTGAGCTGAGAGGG+TGG | + | chr7.1:57631261-57631280 | None:intergenic | 65.0% | |
| GGACACTCCGGTGAGCTGAG+AGG | + | chr7.1:57631265-57631284 | None:intergenic | 65.0% | |
| !! | CACCGGAGTGTCCGGCGTTT+TGG | - | chr7.1:57631272-57631291 | MS.gene98228:CDS | 65.0% |
| !!! | TGTCCGGCGTTTTGGCTCCG+CGG | - | chr7.1:57631280-57631299 | MS.gene98228:CDS | 65.0% |
| ACTGCGACGCTAGCCCCTCG+AGG | + | chr7.1:57632515-57632534 | None:intergenic | 70.0% | |
| CCGCCGCGGAGCCAAAACGC+CGG | + | chr7.1:57631286-57631305 | None:intergenic | 75.0% | |
| !!! | CCGGCGTTTTGGCTCCGCGG+CGG | - | chr7.1:57631283-57631302 | MS.gene98228:CDS | 75.0% |
| !!! | GCGTTTTGGCTCCGCGGCGG+CGG | - | chr7.1:57631286-57631305 | MS.gene98228:CDS | 75.0% |
| ! | CTCCTCGTCGGCCGCCGCCG+CGG | + | chr7.1:57631300-57631319 | None:intergenic | 85.0% |
| ! | CTCCGCGGCGGCGGCCGACG+AGG | - | chr7.1:57631295-57631314 | MS.gene98228:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 57631203 | 57634728 | 57631203 | ID=MS.gene98228 |
| chr7.1 | mRNA | 57631203 | 57634728 | 57631203 | ID=MS.gene98228.t1;Parent=MS.gene98228 |
| chr7.1 | exon | 57634324 | 57634728 | 57634324 | ID=MS.gene98228.t1.exon1;Parent=MS.gene98228.t1 |
| chr7.1 | CDS | 57634324 | 57634728 | 57634324 | ID=cds.MS.gene98228.t1;Parent=MS.gene98228.t1 |
| chr7.1 | exon | 57632733 | 57632907 | 57632733 | ID=MS.gene98228.t1.exon2;Parent=MS.gene98228.t1 |
| chr7.1 | CDS | 57632733 | 57632907 | 57632733 | ID=cds.MS.gene98228.t1;Parent=MS.gene98228.t1 |
| chr7.1 | exon | 57631753 | 57632030 | 57631753 | ID=MS.gene98228.t1.exon3;Parent=MS.gene98228.t1 |
| chr7.1 | CDS | 57631753 | 57632030 | 57631753 | ID=cds.MS.gene98228.t1;Parent=MS.gene98228.t1 |
| chr7.1 | exon | 57631203 | 57631310 | 57631203 | ID=MS.gene98228.t1.exon4;Parent=MS.gene98228.t1 |
| chr7.1 | CDS | 57631203 | 57631310 | 57631203 | ID=cds.MS.gene98228.t1;Parent=MS.gene98228.t1 |
| Gene Sequence |
| Protein sequence |
