Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98229.t1 | XP_013443378.1 | 95.6 | 321 | 14 | 0 | 1 | 321 | 1 | 321 | 1.20E-168 | 602.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98229.t1 | Q8N5M1 | 30.8 | 237 | 154 | 5 | 83 | 317 | 47 | 275 | 4.8e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98229.t1 | A0A072TKN2 | 95.6 | 321 | 14 | 0 | 1 | 321 | 1 | 321 | 8.6e-169 | 602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90723 | MS.gene98229 | PPI |
| MS.gene061619 | MS.gene98229 | PPI |
| MS.gene063717 | MS.gene98229 | PPI |
| MS.gene26425 | MS.gene98229 | PPI |
| MS.gene26606 | MS.gene98229 | PPI |
| MS.gene63685 | MS.gene98229 | PPI |
| MS.gene27265 | MS.gene98229 | PPI |
| MS.gene47555 | MS.gene98229 | PPI |
| MS.gene27003 | MS.gene98229 | PPI |
| MS.gene39553 | MS.gene98229 | PPI |
| MS.gene24232 | MS.gene98229 | PPI |
| MS.gene36891 | MS.gene98229 | PPI |
| MS.gene053439 | MS.gene98229 | PPI |
| MS.gene073885 | MS.gene98229 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98229.t1 | MTR_0018s0290 | 95.639 | 321 | 14 | 0 | 1 | 321 | 1 | 321 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98229.t1 | AT5G40660 | 67.197 | 314 | 98 | 2 | 7 | 319 | 14 | 323 | 3.86e-146 | 414 |
Find 71 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAATGCTCAATAATTT+TGG | 0.051463 | 7.1:+57646239 | None:intergenic |
| GAGAGGGTGGATAGAAATTT+AGG | 0.167626 | 7.1:+57648100 | None:intergenic |
| CACTGGTTGGAGTCAGAATT+TGG | 0.210951 | 7.1:-57645412 | MS.gene98229:CDS |
| TCATCACCAGTTGCATTTCT+TGG | 0.241027 | 7.1:-57644658 | MS.gene98229:CDS |
| ATATTGACATAGCTGATATT+AGG | 0.257910 | 7.1:-57644690 | MS.gene98229:CDS |
| TAGACTTGAAGAAGATTTAC+AGG | 0.269964 | 7.1:-57645188 | MS.gene98229:intron |
| CACCGGAGTGTCCGGCGTTT+TGG | 0.294846 | 7.1:-57648073 | MS.gene98229:CDS |
| TCGCCGCAGTCGGTGATTTC+AGG | 0.324473 | 7.1:+57647981 | None:intergenic |
| GACAGGTGGGGCCTTGTTGA+AGG | 0.349063 | 7.1:-57644721 | MS.gene98229:CDS |
| AGAGGGTGGATAGAAATTTA+GGG | 0.351887 | 7.1:+57648101 | None:intergenic |
| CTCCGCGGCGGCGGCCGACG+AGG | 0.401254 | 7.1:-57648050 | MS.gene98229:CDS |
| TTATCATTGTAGCAAATAGA+TGG | 0.410965 | 7.1:-57646333 | MS.gene98229:intron |
| GAAAACAGATGACTGTGAAT+TGG | 0.415426 | 7.1:-57645308 | MS.gene98229:CDS |
| TGCTTGCACTGCCTTGGAAA+GGG | 0.418660 | 7.1:-57646277 | MS.gene98229:CDS |
| TATTGACATAGCTGATATTA+GGG | 0.423099 | 7.1:-57644689 | MS.gene98229:CDS |
| TTTATGACGGGATCGATTGT+AGG | 0.424513 | 7.1:-57647920 | MS.gene98229:CDS |
| GAGACTTGCTTGCACTGCCT+TGG | 0.428917 | 7.1:-57646283 | MS.gene98229:CDS |
| CACGGCAAAATACTAAATCT+TGG | 0.446774 | 7.1:+57646205 | None:intergenic |
| CGGGATCGATTGTAGGGAAA+AGG | 0.450926 | 7.1:-57647913 | MS.gene98229:CDS |
| CTCATAAGAGGCATTGTAAA+GGG | 0.454432 | 7.1:+57646303 | None:intergenic |
| TAACGCTATTGCTGCTGAAT+GGG | 0.455806 | 7.1:-57647768 | MS.gene98229:CDS |
| CTCCTCGTCGGCCGCCGCCG+CGG | 0.460829 | 7.1:+57648048 | None:intergenic |
| CTAACGCTATTGCTGCTGAA+TGG | 0.471281 | 7.1:-57647769 | MS.gene98229:CDS |
| AGCTTAAGCGGTCTCTTAGC+AGG | 0.471890 | 7.1:+57647809 | None:intergenic |
| ATTAACAATTGCCATTGCAT+TGG | 0.483668 | 7.1:-57645251 | MS.gene98229:CDS |
| TTTGGTGGAAAGCAGGAAGA+TGG | 0.485177 | 7.1:-57645361 | MS.gene98229:CDS |
| CTTGCGAGTTCACTGTCATC+AGG | 0.496362 | 7.1:+57646180 | None:intergenic |
| TCTCAGCTCACCGGAGTGTC+CGG | 0.498918 | 7.1:-57648081 | MS.gene98229:CDS |
| AGGTGGGGCCTTGTTGAAGG+TGG | 0.501948 | 7.1:-57644718 | MS.gene98229:CDS |
| GACAAACCAAGAAATGCAAC+TGG | 0.502836 | 7.1:+57644652 | None:intergenic |
| GATCCCGTCATAAAAGAAAT+CGG | 0.504982 | 7.1:+57647929 | None:intergenic |
| TTGCTTGCACTGCCTTGGAA+AGG | 0.505924 | 7.1:-57646278 | MS.gene98229:CDS |
| GACACTCCGGTGAGCTGAGA+GGG | 0.508697 | 7.1:+57648084 | None:intergenic |
| TATCAGCTATGTCAATATCA+TGG | 0.523346 | 7.1:+57644695 | None:intergenic |
| TTGCCATTGCATTGGTGCAT+GGG | 0.523502 | 7.1:-57645243 | MS.gene98229:CDS |
| TTATGACGGGATCGATTGTA+GGG | 0.523541 | 7.1:-57647919 | MS.gene98229:CDS |
| TCTCATAAGAGGCATTGTAA+AGG | 0.532856 | 7.1:+57646302 | None:intergenic |
| CCGCCGCGGAGCCAAAACGC+CGG | 0.535070 | 7.1:+57648062 | None:intergenic |
| TGATCCTCTACTACACTGGT+TGG | 0.535520 | 7.1:-57645425 | MS.gene98229:CDS |
| GTGCAAGCAAGTCTCATAAG+AGG | 0.536748 | 7.1:+57646291 | None:intergenic |
| AGTTTACGCCTCGCCGCAGT+CGG | 0.550895 | 7.1:+57647971 | None:intergenic |
| AAGACAAGAGAAGCGGATGA+TGG | 0.554937 | 7.1:-57647875 | MS.gene98229:CDS |
| ATTGCCATTGCATTGGTGCA+TGG | 0.557107 | 7.1:-57645244 | MS.gene98229:CDS |
| AGCCAAAACGCCGGACACTC+CGG | 0.558989 | 7.1:+57648071 | None:intergenic |
| ATCATCTTTCACATTCTCAT+CGG | 0.566012 | 7.1:-57648020 | MS.gene98229:CDS |
| ATCTTTCACATTCTCATCGG+AGG | 0.570107 | 7.1:-57648017 | MS.gene98229:CDS |
| AAGCGGATGATGGTAATGGT+TGG | 0.574002 | 7.1:-57647865 | MS.gene98229:CDS |
| AGAGAAGCGGATGATGGTAA+TGG | 0.574159 | 7.1:-57647869 | MS.gene98229:CDS |
| AAATTGATCCTCTACTACAC+TGG | 0.578145 | 7.1:-57645429 | MS.gene98229:CDS |
| GCGTTAGCAAGAGCAACAGT+AGG | 0.579760 | 7.1:+57647785 | None:intergenic |
| GACTCCAACCAGTGTAGTAG+AGG | 0.581369 | 7.1:+57645421 | None:intergenic |
| TGGAAAGGGTTCCTGTGACA+AGG | 0.585069 | 7.1:-57646263 | MS.gene98229:CDS |
| TATCCACCCTCTCAGCTCAC+CGG | 0.585445 | 7.1:-57648090 | MS.gene98229:CDS |
| CCGCAGTCGGTGATTTCAGG+TGG | 0.590652 | 7.1:+57647984 | None:intergenic |
| TTTCCCATGCACCAATGCAA+TGG | 0.595226 | 7.1:+57645240 | None:intergenic |
| AGAAGTGAAGACAAGAGAAG+CGG | 0.606025 | 7.1:-57647882 | MS.gene98229:CDS |
| GCAGGAAGATGGTCTTGTGA+TGG | 0.606259 | 7.1:-57645350 | MS.gene98229:CDS |
| GAGGCGTAAACTGTCGTCGT+CGG | 0.606857 | 7.1:-57647960 | MS.gene98229:CDS |
| TGACAGTGAACTCGCAAGCA+TGG | 0.609118 | 7.1:-57646175 | MS.gene98229:CDS |
| TGTCACAGGAACCCTTTCCA+AGG | 0.620314 | 7.1:+57646266 | None:intergenic |
| GAACTCGCAAGCATGGTCCA+TGG | 0.622464 | 7.1:-57646168 | MS.gene98229:intron |
| ACTCCGGTGAGCTGAGAGGG+TGG | 0.626180 | 7.1:+57648087 | None:intergenic |
| TATCATGGCCACCTTCAACA+AGG | 0.639788 | 7.1:+57644710 | None:intergenic |
| GCAACAGTAGGAAGCTTAAG+CGG | 0.640307 | 7.1:+57647797 | None:intergenic |
| TGCTGCAATAGCATCAATTG+CGG | 0.640444 | 7.1:+57645285 | None:intergenic |
| GCATGGGAAATTGCAAATTG+AGG | 0.640793 | 7.1:-57645227 | MS.gene98229:CDS |
| GTTCACTGTCATCAGGAGCA+CGG | 0.645009 | 7.1:+57646187 | None:intergenic |
| GGACACTCCGGTGAGCTGAG+AGG | 0.655400 | 7.1:+57648083 | None:intergenic |
| CCACCTGAAATCACCGACTG+CGG | 0.657677 | 7.1:-57647984 | MS.gene98229:CDS |
| AGATGATGACTGCTCCTCGT+CGG | 0.687316 | 7.1:+57648036 | None:intergenic |
| TGAAATCACCGACTGCGGCG+AGG | 0.688123 | 7.1:-57647979 | MS.gene98229:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAAAATTTGTGA+AGG | + | chr7.1:57646257-57646276 | None:intergenic | 10.0% |
| !!! | AAGTTATTTTTTTTTTCATT+AGG | - | chr7.1:57645128-57645147 | MS.gene98229:intron | 10.0% |
| !!! | ACTTTATATTCTGTTTTATA+TGG | - | chr7.1:57646369-57646388 | MS.gene98229:intron | 15.0% |
| !!! | ACTTTTAACATATCAATTTT+AGG | - | chr7.1:57646793-57646812 | MS.gene98229:intron | 15.0% |
| !!! | ATTAATTCATTTTTTCATGT+TGG | - | chr7.1:57647096-57647115 | MS.gene98229:intron | 15.0% |
| !! | AAATTATTCTTGATGAATTG+AGG | - | chr7.1:57646282-57646301 | MS.gene98229:CDS | 20.0% |
| !! | AAGTTATGATCAAATACAAT+CGG | - | chr7.1:57646149-57646168 | MS.gene98229:intron | 20.0% |
| !! | ATTTAGAAAAGTGATATTGA+TGG | - | chr7.1:57646849-57646868 | MS.gene98229:intron | 20.0% |
| !!! | ATCAAATGCTCAATAATTTT+GGG | + | chr7.1:57646544-57646563 | None:intergenic | 20.0% |
| !!! | CTTTTAAATATTTCCAATGA+CGG | + | chr7.1:57646336-57646355 | None:intergenic | 20.0% |
| !!! | TATTCTGTTTTATATGGTTA+TGG | - | chr7.1:57646375-57646394 | MS.gene98229:intron | 20.0% |
| !!! | TGTGAAGGTTTTAATAAAAA+TGG | + | chr7.1:57646242-57646261 | None:intergenic | 20.0% |
| !!! | TTAACATATCAATTTTAGGA+TGG | - | chr7.1:57646797-57646816 | MS.gene98229:intron | 20.0% |
| ! | AGATATAGAGATTAATGAGT+TGG | - | chr7.1:57645588-57645607 | MS.gene98229:intron | 25.0% |
| ! | AGGATTGTAAGCTAATATTT+AGG | - | chr7.1:57646302-57646321 | MS.gene98229:CDS | 25.0% |
| ! | AGGTTAGTGTAAATGAAATT+TGG | - | chr7.1:57645148-57645167 | MS.gene98229:intron | 25.0% |
| ! | AGTACATGAATGTGAATTAT+AGG | - | chr7.1:57647717-57647736 | MS.gene98229:intron | 25.0% |
| ! | ATATTGACATAGCTGATATT+AGG | - | chr7.1:57648091-57648110 | MS.gene98229:CDS | 25.0% |
| ! | CACAAGATAAAATAGTAGTA+AGG | - | chr7.1:57645485-57645504 | MS.gene98229:intron | 25.0% |
| ! | CATCAAAAACATTATTGTCT+TGG | - | chr7.1:57646198-57646217 | MS.gene98229:CDS | 25.0% |
| ! | CGTCATTGGAAATATTTAAA+AGG | - | chr7.1:57646334-57646353 | MS.gene98229:intron | 25.0% |
| ! | GTAGATAAGTTAATCAAAAG+AGG | - | chr7.1:57645805-57645824 | MS.gene98229:intron | 25.0% |
| ! | TAAAGCTAATTGAAAAGTCA+AGG | - | chr7.1:57646082-57646101 | MS.gene98229:intron | 25.0% |
| ! | TAAGGTTTCTAACAGAAAAT+AGG | + | chr7.1:57647871-57647890 | None:intergenic | 25.0% |
| ! | TATTGACATAGCTGATATTA+GGG | - | chr7.1:57648092-57648111 | MS.gene98229:CDS | 25.0% |
| ! | TTATCATTGTAGCAAATAGA+TGG | - | chr7.1:57646448-57646467 | MS.gene98229:intron | 25.0% |
| !! | AGAGAAGAATTTTATGATGT+GGG | - | chr7.1:57647788-57647807 | MS.gene98229:CDS | 25.0% |
| !! | CATCAAATGCTCAATAATTT+TGG | + | chr7.1:57646545-57646564 | None:intergenic | 25.0% |
| !! | GTTTCTGTTATAGTTTTTCT+AGG | + | chr7.1:57645559-57645578 | None:intergenic | 25.0% |
| !! | TAGAGAAGAATTTTATGATG+TGG | - | chr7.1:57647787-57647806 | MS.gene98229:CDS | 25.0% |
| !! | TCTGTTATCCTAAAAAGTAT+TGG | + | chr7.1:57647259-57647278 | None:intergenic | 25.0% |
| !!! | AAAAGTGATATTGATGGTTT+TGG | - | chr7.1:57646855-57646874 | MS.gene98229:intron | 25.0% |
| !!! | AAAGTGATATTGATGGTTTT+GGG | - | chr7.1:57646856-57646875 | MS.gene98229:intron | 25.0% |
| !!! | AATATTTTAGCTTTACCTAC+TGG | - | chr7.1:57647196-57647215 | MS.gene98229:intron | 25.0% |
| !!! | ATTTTTTCATGTTGGCTATA+TGG | - | chr7.1:57647104-57647123 | MS.gene98229:intron | 25.0% |
| !!! | GATTTTCTATTAGTTTGCTT+AGG | - | chr7.1:57647042-57647061 | MS.gene98229:intron | 25.0% |
| AAGGATAGTCATATCACTAA+AGG | - | chr7.1:57645523-57645542 | MS.gene98229:intron | 30.0% | |
| AATAATTCTATCACTCCAGT+AGG | + | chr7.1:57647214-57647233 | None:intergenic | 30.0% | |
| AATATTTCCAATGACGGTTA+AGG | + | chr7.1:57646330-57646349 | None:intergenic | 30.0% | |
| AATGTGAATTATAGGACTCT+TGG | - | chr7.1:57647725-57647744 | MS.gene98229:intron | 30.0% | |
| AATTATAGGACTCTTGGTTT+GGG | - | chr7.1:57647731-57647750 | MS.gene98229:intron | 30.0% | |
| ATATTTCCAATGACGGTTAA+GGG | + | chr7.1:57646329-57646348 | None:intergenic | 30.0% | |
| ATCATCTTTCACATTCTCAT+CGG | - | chr7.1:57644761-57644780 | MS.gene98229:intron | 30.0% | |
| ATCTTCTCTCTATGACAATA+AGG | - | chr7.1:57646970-57646989 | MS.gene98229:intron | 30.0% | |
| ATTAACAATTGCCATTGCAT+TGG | - | chr7.1:57647530-57647549 | MS.gene98229:intron | 30.0% | |
| GAAATTGTTAGAATATGCGA+GGG | - | chr7.1:57647810-57647829 | MS.gene98229:CDS | 30.0% | |
| TAAATAGTTTCCATTGCCAT+AGG | + | chr7.1:57646894-57646913 | None:intergenic | 30.0% | |
| TACCATATTAAGCTTAGTTG+CGG | + | chr7.1:57647765-57647784 | None:intergenic | 30.0% | |
| TAGACTTGAAGAAGATTTAC+AGG | - | chr7.1:57647593-57647612 | MS.gene98229:intron | 30.0% | |
| TATCAGCTATGTCAATATCA+TGG | + | chr7.1:57648089-57648108 | None:intergenic | 30.0% | |
| TATTTGATCATAACTTTCCG+TGG | + | chr7.1:57646145-57646164 | None:intergenic | 30.0% | |
| TCTCTCTTCTCTCTTAATTT+GGG | - | chr7.1:57647982-57648001 | MS.gene98229:CDS | 30.0% | |
| TGAATAATCAGCTAAATTGC+AGG | - | chr7.1:57647013-57647032 | MS.gene98229:intron | 30.0% | |
| TGCTTATTATATGAGCTGTT+AGG | - | chr7.1:57645447-57645466 | MS.gene98229:CDS | 30.0% | |
| TTATATGGTTATGGTTGCAT+AGG | - | chr7.1:57646384-57646403 | MS.gene98229:intron | 30.0% | |
| TTCTCTCTTCTCTCTTAATT+TGG | - | chr7.1:57647981-57648000 | MS.gene98229:CDS | 30.0% | |
| ! | AAGTCTTATGTCACTAAGTA+GGG | + | chr7.1:57645649-57645668 | None:intergenic | 30.0% |
| ! | ATGCTTTACCAAAACTTGTT+TGG | + | chr7.1:57645347-57645366 | None:intergenic | 30.0% |
| ! | ATGTCTTCATTCTCTTTTTC+AGG | - | chr7.1:57648035-57648054 | MS.gene98229:CDS | 30.0% |
| ! | TAATGAGTTGGACTGAATTA+TGG | - | chr7.1:57645600-57645619 | MS.gene98229:intron | 30.0% |
| !! | AAGTGATATTGATGGTTTTG+GGG | - | chr7.1:57646857-57646876 | MS.gene98229:intron | 30.0% |
| !! | CTTGTTGACCAATACTTTTT+AGG | - | chr7.1:57647248-57647267 | MS.gene98229:intron | 30.0% |
| AAAAAGCTGGAGTATACAAC+AGG | + | chr7.1:57647402-57647421 | None:intergenic | 35.0% | |
| AAAAGAGAAGACTGTCTCTA+AGG | + | chr7.1:57647889-57647908 | None:intergenic | 35.0% | |
| AAAATCCTACCACATGATGA+AGG | + | chr7.1:57645855-57645874 | None:intergenic | 35.0% | |
| AAATCCTACCACATGATGAA+GGG | + | chr7.1:57645854-57645873 | None:intergenic | 35.0% | |
| AAATTGATCCTCTACTACAC+TGG | - | chr7.1:57647352-57647371 | MS.gene98229:intron | 35.0% | |
| AAGGAGAGTAGATTAGATGA+AGG | - | chr7.1:57645504-57645523 | MS.gene98229:intron | 35.0% | |
| AATAAATCTAAGTTGCCTCG+AGG | - | chr7.1:57645933-57645952 | MS.gene98229:intron | 35.0% | |
| ACCATATTAAGCTTAGTTGC+GGG | + | chr7.1:57647764-57647783 | None:intergenic | 35.0% | |
| ACTAAGTAGGGTCAGTTATA+TGG | + | chr7.1:57645637-57645656 | None:intergenic | 35.0% | |
| AGAGGGTGGATAGAAATTTA+GGG | + | chr7.1:57644683-57644702 | None:intergenic | 35.0% | |
| ATAAATCTAAGTTGCCTCGA+GGG | - | chr7.1:57645934-57645953 | MS.gene98229:intron | 35.0% | |
| ATTGAGATCAGAGATCTGAA+AGG | + | chr7.1:57646664-57646683 | None:intergenic | 35.0% | |
| CAATAACTAACACCATACCA+TGG | + | chr7.1:57646633-57646652 | None:intergenic | 35.0% | |
| CACGGCAAAATACTAAATCT+TGG | + | chr7.1:57646579-57646598 | None:intergenic | 35.0% | |
| CTACTTAGTGACATAAGACT+TGG | - | chr7.1:57645648-57645667 | MS.gene98229:intron | 35.0% | |
| CTGAATGGGATTATCAAGTA+TGG | - | chr7.1:57645027-57645046 | MS.gene98229:intron | 35.0% | |
| CTGAGTATACTGAACTTGAA+GGG | - | chr7.1:57646717-57646736 | MS.gene98229:intron | 35.0% | |
| GAAAACAGATGACTGTGAAT+TGG | - | chr7.1:57647473-57647492 | MS.gene98229:intron | 35.0% | |
| GAAGAAGATTTACAGGTACT+TGG | - | chr7.1:57647600-57647619 | MS.gene98229:intron | 35.0% | |
| GAATTATAGGACTCTTGGTT+TGG | - | chr7.1:57647730-57647749 | MS.gene98229:intron | 35.0% | |
| GATCCCGTCATAAAAGAAAT+CGG | + | chr7.1:57644855-57644874 | None:intergenic | 35.0% | |
| GCATAGCTCATTTACCTATA+TGG | - | chr7.1:57645363-57645382 | MS.gene98229:CDS | 35.0% | |
| GGAAATTGTTAGAATATGCG+AGG | - | chr7.1:57647809-57647828 | MS.gene98229:CDS | 35.0% | |
| GGGAAAATATATGTTGAGTG+AGG | - | chr7.1:57645895-57645914 | MS.gene98229:intron | 35.0% | |
| TAATCAAAAGAGGTCCTAAG+TGG | - | chr7.1:57645815-57645834 | MS.gene98229:intron | 35.0% | |
| TAGAATATGCGAGGGAATAT+AGG | - | chr7.1:57647818-57647837 | MS.gene98229:CDS | 35.0% | |
| TGATTCATCTGTGCTTCATT+GGG | - | chr7.1:57645057-57645076 | MS.gene98229:intron | 35.0% | |
| TTGATTCATCTGTGCTTCAT+TGG | - | chr7.1:57645056-57645075 | MS.gene98229:intron | 35.0% | |
| ! | ATGATTTTCAGAAAGATGCG+TGG | - | chr7.1:57647286-57647305 | MS.gene98229:intron | 35.0% |
| ! | CAAGTCTTATGTCACTAAGT+AGG | + | chr7.1:57645650-57645669 | None:intergenic | 35.0% |
| ! | CATAGATGCCAAACAAGTTT+TGG | - | chr7.1:57645336-57645355 | MS.gene98229:CDS | 35.0% |
| ! | GAGGATCAATTTTCTCAACT+TGG | + | chr7.1:57647344-57647363 | None:intergenic | 35.0% |
| !! | ACCTATATGGTGTTGCATTA+AGG | - | chr7.1:57645376-57645395 | MS.gene98229:CDS | 35.0% |
| !! | CTCATAAGAGGCATTGTAAA+GGG | + | chr7.1:57646481-57646500 | None:intergenic | 35.0% |
| !! | TCTCATAAGAGGCATTGTAA+AGG | + | chr7.1:57646482-57646501 | None:intergenic | 35.0% |
| !!! | ATGCCGATTTCTTTTATGAC+GGG | - | chr7.1:57644849-57644868 | MS.gene98229:intron | 35.0% |
| !!! | GATGCCGATTTCTTTTATGA+CGG | - | chr7.1:57644848-57644867 | MS.gene98229:intron | 35.0% |
| !!! | GTTGTATACTCCAGCTTTTT+TGG | - | chr7.1:57647402-57647421 | MS.gene98229:intron | 35.0% |
| !!! | TCTTCATTCTCTTTTTCAGG+TGG | - | chr7.1:57648038-57648057 | MS.gene98229:CDS | 35.0% |
| AATAACAGCTTCCACAGATG+AGG | + | chr7.1:57647171-57647190 | None:intergenic | 40.0% | |
| ACTAAAGTCCCTTCATCATG+TGG | - | chr7.1:57645843-57645862 | MS.gene98229:intron | 40.0% | |
| AGAAGTGAAGACAAGAGAAG+CGG | - | chr7.1:57644899-57644918 | MS.gene98229:intron | 40.0% | |
| ATCCCAGAGAAAATGCTCAT+CGG | + | chr7.1:57647912-57647931 | None:intergenic | 40.0% | |
| ATCTTTCACATTCTCATCGG+AGG | - | chr7.1:57644764-57644783 | MS.gene98229:intron | 40.0% | |
| CCATATTAAGCTTAGTTGCG+GGG | + | chr7.1:57647763-57647782 | None:intergenic | 40.0% | |
| CTTCATGTTTACCTCATCTG+TGG | - | chr7.1:57647157-57647176 | MS.gene98229:intron | 40.0% | |
| GACAAACCAAGAAATGCAAC+TGG | + | chr7.1:57648132-57648151 | None:intergenic | 40.0% | |
| GACTTTAGTACCTACCACTT+AGG | + | chr7.1:57645832-57645851 | None:intergenic | 40.0% | |
| GAGAGGGTGGATAGAAATTT+AGG | + | chr7.1:57644684-57644703 | None:intergenic | 40.0% | |
| GCATGGGAAATTGCAAATTG+AGG | - | chr7.1:57647554-57647573 | MS.gene98229:intron | 40.0% | |
| GCCTTAATGCAACACCATAT+AGG | + | chr7.1:57645380-57645399 | None:intergenic | 40.0% | |
| GCTGAGTATACTGAACTTGA+AGG | - | chr7.1:57646716-57646735 | MS.gene98229:intron | 40.0% | |
| GGTGCAGTGATTACTATACA+GGG | - | chr7.1:57646934-57646953 | MS.gene98229:intron | 40.0% | |
| GTATAGTAATCACTGCACCA+AGG | + | chr7.1:57646933-57646952 | None:intergenic | 40.0% | |
| TAAATCTAAGTTGCCTCGAG+GGG | - | chr7.1:57645935-57645954 | MS.gene98229:intron | 40.0% | |
| TAACGCTATTGCTGCTGAAT+GGG | - | chr7.1:57645013-57645032 | MS.gene98229:intron | 40.0% | |
| TACTCAGCATGTATTTCGTC+AGG | + | chr7.1:57646704-57646723 | None:intergenic | 40.0% | |
| TCATCACCAGTTGCATTTCT+TGG | - | chr7.1:57648123-57648142 | MS.gene98229:CDS | 40.0% | |
| TGCTGCAATAGCATCAATTG+CGG | + | chr7.1:57647499-57647518 | None:intergenic | 40.0% | |
| TGCTTAGGTCTATATGTCTC+AGG | - | chr7.1:57647057-57647076 | MS.gene98229:intron | 40.0% | |
| TGGTGCAGTGATTACTATAC+AGG | - | chr7.1:57646933-57646952 | MS.gene98229:intron | 40.0% | |
| TGTATTTCGTCAGGCAATCA+CGG | + | chr7.1:57646695-57646714 | None:intergenic | 40.0% | |
| TTAGGTCTATATGTCTCAGG+AGG | - | chr7.1:57647060-57647079 | MS.gene98229:intron | 40.0% | |
| TTGTTTGTCCAACTCCAAAC+AGG | + | chr7.1:57645402-57645421 | None:intergenic | 40.0% | |
| ! | AAGTTCTACAGTTCTGACCT+TGG | - | chr7.1:57646913-57646932 | MS.gene98229:intron | 40.0% |
| ! | ATTTTCCCATACACATAGCC+AGG | + | chr7.1:57645883-57645902 | None:intergenic | 40.0% |
| ! | TTATGACGGGATCGATTGTA+GGG | - | chr7.1:57644862-57644881 | MS.gene98229:intron | 40.0% |
| ! | TTCCGATGAGCATTTTCTCT+GGG | - | chr7.1:57647907-57647926 | MS.gene98229:CDS | 40.0% |
| ! | TTTATGACGGGATCGATTGT+AGG | - | chr7.1:57644861-57644880 | MS.gene98229:intron | 40.0% |
| ! | TTTCCGATGAGCATTTTCTC+TGG | - | chr7.1:57647906-57647925 | MS.gene98229:CDS | 40.0% |
| ! | TTTTCCCATACACATAGCCA+GGG | + | chr7.1:57645882-57645901 | None:intergenic | 40.0% |
| !! | ATAATTTTGGGCCTTGTCAC+AGG | + | chr7.1:57646532-57646551 | None:intergenic | 40.0% |
| !! | TCTTGGCATATTTGCTGTTG+CGG | - | chr7.1:57646215-57646234 | MS.gene98229:CDS | 40.0% |
| !!! | ATTCTCTTTTTCAGGTGGAC+AGG | - | chr7.1:57648043-57648062 | MS.gene98229:CDS | 40.0% |
| !!! | ATTGATGGTTTTGGGGTCAT+AGG | - | chr7.1:57646864-57646883 | MS.gene98229:intron | 40.0% |
| !!! | CATTTTCTCTGGGATTACAC+GGG | - | chr7.1:57647917-57647936 | MS.gene98229:CDS | 40.0% |
| !!! | GCATTTTCTCTGGGATTACA+CGG | - | chr7.1:57647916-57647935 | MS.gene98229:CDS | 40.0% |
| !!! | GTATACTCCAGCTTTTTTGG+TGG | - | chr7.1:57647405-57647424 | MS.gene98229:intron | 40.0% |
| AAGACAAGAGAAGCGGATGA+TGG | - | chr7.1:57644906-57644925 | MS.gene98229:intron | 45.0% | |
| AAGTCCCTTCATCATGTGGT+AGG | - | chr7.1:57645847-57645866 | MS.gene98229:intron | 45.0% | |
| AATATCCGTGCTTCACGGTT+TGG | + | chr7.1:57645192-57645211 | None:intergenic | 45.0% | |
| AGTTGCATGTGGGGATACTT+TGG | - | chr7.1:57645968-57645987 | MS.gene98229:intron | 45.0% | |
| CAAAAGAGGTCCTAAGTGGT+AGG | - | chr7.1:57645819-57645838 | MS.gene98229:intron | 45.0% | |
| CCCCGCAACTAAGCTTAATA+TGG | - | chr7.1:57647760-57647779 | MS.gene98229:CDS | 45.0% | |
| CTAACGCTATTGCTGCTGAA+TGG | - | chr7.1:57645012-57645031 | MS.gene98229:intron | 45.0% | |
| CTATCCCTGGCTATGTGTAT+GGG | - | chr7.1:57645875-57645894 | MS.gene98229:intron | 45.0% | |
| CTGCTTTCCACCAAAAAAGC+TGG | + | chr7.1:57647415-57647434 | None:intergenic | 45.0% | |
| GCAACAGTAGGAAGCTTAAG+CGG | + | chr7.1:57644987-57645006 | None:intergenic | 45.0% | |
| GCATTGAAACCTCACTACCA+CGG | - | chr7.1:57646125-57646144 | MS.gene98229:intron | 45.0% | |
| GTGCAAGCAAGTCTCATAAG+AGG | + | chr7.1:57646493-57646512 | None:intergenic | 45.0% | |
| GTGTCAATATCCGTGCTTCA+CGG | + | chr7.1:57645197-57645216 | None:intergenic | 45.0% | |
| GTGTTGCATTAAGGCCTGTT+TGG | - | chr7.1:57645385-57645404 | MS.gene98229:CDS | 45.0% | |
| TATCATGGCCACCTTCAACA+AGG | + | chr7.1:57648074-57648093 | None:intergenic | 45.0% | |
| TCTATCCCTGGCTATGTGTA+TGG | - | chr7.1:57645874-57645893 | MS.gene98229:intron | 45.0% | |
| TGAAGCACGGATATTGACAC+CGG | - | chr7.1:57645197-57645216 | MS.gene98229:CDS | 45.0% | |
| TGATCCTCTACTACACTGGT+TGG | - | chr7.1:57647356-57647375 | MS.gene98229:intron | 45.0% | |
| TTAGGTCCCTTAACCGTCAT+TGG | - | chr7.1:57646320-57646339 | MS.gene98229:CDS | 45.0% | |
| TTTCCCATGCACCAATGCAA+TGG | + | chr7.1:57647544-57647563 | None:intergenic | 45.0% | |
| TTTGGTGGAAAGCAGGAAGA+TGG | - | chr7.1:57647420-57647439 | MS.gene98229:intron | 45.0% | |
| ! | AGAGAAGCGGATGATGGTAA+TGG | - | chr7.1:57644912-57644931 | MS.gene98229:intron | 45.0% |
| ! | ATACTGAACTTGAAGGGTGC+TGG | - | chr7.1:57646723-57646742 | MS.gene98229:intron | 45.0% |
| ! | ATTGCCATTGCATTGGTGCA+TGG | - | chr7.1:57647537-57647556 | MS.gene98229:intron | 45.0% |
| ! | CACTGGTTGGAGTCAGAATT+TGG | - | chr7.1:57647369-57647388 | MS.gene98229:intron | 45.0% |
| ! | CATAACTTTCCGTGGTAGTG+AGG | + | chr7.1:57646137-57646156 | None:intergenic | 45.0% |
| ! | CATTAAGGCCTGTTTGGAGT+TGG | - | chr7.1:57645391-57645410 | MS.gene98229:CDS | 45.0% |
| ! | GTGGTAGGATTTTCTATCCC+TGG | - | chr7.1:57645862-57645881 | MS.gene98229:intron | 45.0% |
| ! | TTGCCATTGCATTGGTGCAT+GGG | - | chr7.1:57647538-57647557 | MS.gene98229:intron | 45.0% |
| !! | AAGCGGATGATGGTAATGGT+TGG | - | chr7.1:57644916-57644935 | MS.gene98229:intron | 45.0% |
| !! | TACTGAACTTGAAGGGTGCT+GGG | - | chr7.1:57646724-57646743 | MS.gene98229:intron | 45.0% |
| !!! | CAGCTTTTTTGGTGGAAAGC+AGG | - | chr7.1:57647413-57647432 | MS.gene98229:intron | 45.0% |
| !!! | TCTTTTTCAGGTGGACAGGT+GGG | - | chr7.1:57648047-57648066 | MS.gene98229:CDS | 45.0% |
| !! | AAAAAATGAATTAATATTTA+TGG | + | chr7.1:57647091-57647110 | None:intergenic | 5.0% |
| AGATGATGACTGCTCCTCGT+CGG | + | chr7.1:57644748-57644767 | None:intergenic | 50.0% | |
| AGCTTAAGCGGTCTCTTAGC+AGG | + | chr7.1:57644975-57644994 | None:intergenic | 50.0% | |
| ATAGGAGCAGAGAGGAGAGT+GGG | - | chr7.1:57647836-57647855 | MS.gene98229:CDS | 50.0% | |
| CATAGGCTTGCCTATGGCAA+TGG | - | chr7.1:57646881-57646900 | MS.gene98229:intron | 50.0% | |
| CGGGATCGATTGTAGGGAAA+AGG | - | chr7.1:57644868-57644887 | MS.gene98229:intron | 50.0% | |
| CTTGCGAGTTCACTGTCATC+AGG | + | chr7.1:57646604-57646623 | None:intergenic | 50.0% | |
| GAATGCCAAACCGTGAAGCA+CGG | - | chr7.1:57645184-57645203 | MS.gene98229:intron | 50.0% | |
| GACTCCAACCAGTGTAGTAG+AGG | + | chr7.1:57647363-57647382 | None:intergenic | 50.0% | |
| GAGGGAATATAGGAGCAGAG+AGG | - | chr7.1:57647828-57647847 | MS.gene98229:CDS | 50.0% | |
| GCACAGACACTCCTCGAATT+AGG | + | chr7.1:57645314-57645333 | None:intergenic | 50.0% | |
| GCGTTAGCAAGAGCAACAGT+AGG | + | chr7.1:57644999-57645018 | None:intergenic | 50.0% | |
| GTTCACTGTCATCAGGAGCA+CGG | + | chr7.1:57646597-57646616 | None:intergenic | 50.0% | |
| TAAGCTTAGTTGCGGGGCTT+AGG | + | chr7.1:57647757-57647776 | None:intergenic | 50.0% | |
| TATAGGAGCAGAGAGGAGAG+TGG | - | chr7.1:57647835-57647854 | MS.gene98229:CDS | 50.0% | |
| TCTCAACTTGGCGTTCTGCA+AGG | + | chr7.1:57647332-57647351 | None:intergenic | 50.0% | |
| TGACAGTGAACTCGCAAGCA+TGG | - | chr7.1:57646606-57646625 | MS.gene98229:intron | 50.0% | |
| TGCTTGCACTGCCTTGGAAA+GGG | - | chr7.1:57646504-57646523 | MS.gene98229:intron | 50.0% | |
| TGGAAAGGGTTCCTGTGACA+AGG | - | chr7.1:57646518-57646537 | MS.gene98229:intron | 50.0% | |
| TGTCACAGGAACCCTTTCCA+AGG | + | chr7.1:57646518-57646537 | None:intergenic | 50.0% | |
| TTGCTTGCACTGCCTTGGAA+AGG | - | chr7.1:57646503-57646522 | MS.gene98229:intron | 50.0% | |
| ! | AATCGGTTCAGCTGCAGTTG+GGG | - | chr7.1:57646166-57646185 | MS.gene98229:intron | 50.0% |
| ! | ACAATCGGTTCAGCTGCAGT+TGG | - | chr7.1:57646164-57646183 | MS.gene98229:intron | 50.0% |
| ! | CAATCGGTTCAGCTGCAGTT+GGG | - | chr7.1:57646165-57646184 | MS.gene98229:intron | 50.0% |
| !! | ACTGAACTTGAAGGGTGCTG+GGG | - | chr7.1:57646725-57646744 | MS.gene98229:intron | 50.0% |
| !! | GCAGGAAGATGGTCTTGTGA+TGG | - | chr7.1:57647431-57647450 | MS.gene98229:intron | 50.0% |
| !!! | CTCTTTTTCAGGTGGACAGG+TGG | - | chr7.1:57648046-57648065 | MS.gene98229:CDS | 50.0% |
| !!! | CTTTTTCAGGTGGACAGGTG+GGG | - | chr7.1:57648048-57648067 | MS.gene98229:CDS | 50.0% |
| AAGTGTCACGTGTCCGACAC+GGG | - | chr7.1:57645282-57645301 | MS.gene98229:CDS | 55.0% | |
| AATTAGGCGTGTCCCCGTGT+CGG | + | chr7.1:57645298-57645317 | None:intergenic | 55.0% | |
| CAAGTGTCACGTGTCCGACA+CGG | - | chr7.1:57645281-57645300 | MS.gene98229:CDS | 55.0% | |
| CGCAAGCATGGTCCATGGTA+TGG | - | chr7.1:57646618-57646637 | MS.gene98229:intron | 55.0% | |
| CGGATATTGACACCGGACAC+TGG | - | chr7.1:57645204-57645223 | MS.gene98229:CDS | 55.0% | |
| CTAGCGTCGCAGTTGCATGT+GGG | - | chr7.1:57645958-57645977 | MS.gene98229:intron | 55.0% | |
| GAACTCGCAAGCATGGTCCA+TGG | - | chr7.1:57646613-57646632 | MS.gene98229:intron | 55.0% | |
| GAGGCGTAAACTGTCGTCGT+CGG | - | chr7.1:57644821-57644840 | MS.gene98229:intron | 55.0% | |
| TAGCGTCGCAGTTGCATGTG+GGG | - | chr7.1:57645959-57645978 | MS.gene98229:intron | 55.0% | |
| TAGGAGCAGAGAGGAGAGTG+GGG | - | chr7.1:57647837-57647856 | MS.gene98229:CDS | 55.0% | |
| TATCCACCCTCTCAGCTCAC+CGG | - | chr7.1:57644691-57644710 | MS.gene98229:CDS | 55.0% | |
| TGGGGTCATAGGCTTGCCTA+TGG | - | chr7.1:57646875-57646894 | MS.gene98229:intron | 55.0% | |
| TGTGTCAGCATGCCAGTGTC+CGG | + | chr7.1:57645219-57645238 | None:intergenic | 55.0% | |
| ! | CCACCTGAAATCACCGACTG+CGG | - | chr7.1:57644797-57644816 | MS.gene98229:intron | 55.0% |
| ! | GAGACTTGCTTGCACTGCCT+TGG | - | chr7.1:57646498-57646517 | MS.gene98229:intron | 55.0% |
| ACGGGGACACGCCTAATTCG+AGG | - | chr7.1:57645300-57645319 | MS.gene98229:CDS | 60.0% | |
| AGCCAAAACGCCGGACACTC+CGG | + | chr7.1:57644713-57644732 | None:intergenic | 60.0% | |
| AGCTGCAGTTGGGGTCGCAA+AGG | - | chr7.1:57646175-57646194 | MS.gene98229:CDS | 60.0% | |
| AGGAGCAGAGAGGAGAGTGG+GGG | - | chr7.1:57647838-57647857 | MS.gene98229:CDS | 60.0% | |
| AGTGTCACGTGTCCGACACG+GGG | - | chr7.1:57645283-57645302 | MS.gene98229:CDS | 60.0% | |
| AGTTTACGCCTCGCCGCAGT+CGG | + | chr7.1:57644813-57644832 | None:intergenic | 60.0% | |
| CCGCAGTCGGTGATTTCAGG+TGG | + | chr7.1:57644800-57644819 | None:intergenic | 60.0% | |
| GACACTCCGGTGAGCTGAGA+GGG | + | chr7.1:57644700-57644719 | None:intergenic | 60.0% | |
| GCTAGCGTCGCAGTTGCATG+TGG | - | chr7.1:57645957-57645976 | MS.gene98229:intron | 60.0% | |
| TCGCCGCAGTCGGTGATTTC+AGG | + | chr7.1:57644803-57644822 | None:intergenic | 60.0% | |
| ! | TCTCAGCTCACCGGAGTGTC+CGG | - | chr7.1:57644700-57644719 | MS.gene98229:CDS | 60.0% |
| ! | TGAAATCACCGACTGCGGCG+AGG | - | chr7.1:57644802-57644821 | MS.gene98229:intron | 60.0% |
| !! | AGGTGGGGCCTTGTTGAAGG+TGG | - | chr7.1:57648063-57648082 | MS.gene98229:CDS | 60.0% |
| !! | GACAGGTGGGGCCTTGTTGA+AGG | - | chr7.1:57648060-57648079 | MS.gene98229:CDS | 60.0% |
| ACTCCGGTGAGCTGAGAGGG+TGG | + | chr7.1:57644697-57644716 | None:intergenic | 65.0% | |
| GGACACTCCGGTGAGCTGAG+AGG | + | chr7.1:57644701-57644720 | None:intergenic | 65.0% | |
| !! | CACCGGAGTGTCCGGCGTTT+TGG | - | chr7.1:57644708-57644727 | MS.gene98229:CDS | 65.0% |
| !!! | TGTCCGGCGTTTTGGCTCCG+CGG | - | chr7.1:57644716-57644735 | MS.gene98229:CDS | 65.0% |
| ACTGCGACGCTAGCCCCTCG+AGG | + | chr7.1:57645951-57645970 | None:intergenic | 70.0% | |
| CCGCCGCGGAGCCAAAACGC+CGG | + | chr7.1:57644722-57644741 | None:intergenic | 75.0% | |
| !!! | CCGGCGTTTTGGCTCCGCGG+CGG | - | chr7.1:57644719-57644738 | MS.gene98229:CDS | 75.0% |
| !!! | GCGTTTTGGCTCCGCGGCGG+CGG | - | chr7.1:57644722-57644741 | MS.gene98229:CDS | 75.0% |
| ! | CTCCTCGTCGGCCGCCGCCG+CGG | + | chr7.1:57644736-57644755 | None:intergenic | 85.0% |
| ! | CTCCGCGGCGGCGGCCGACG+AGG | - | chr7.1:57644731-57644750 | MS.gene98229:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 57644639 | 57648164 | 57644639 | ID=MS.gene98229 |
| chr7.1 | mRNA | 57644639 | 57648164 | 57644639 | ID=MS.gene98229.t1;Parent=MS.gene98229 |
| chr7.1 | exon | 57647760 | 57648164 | 57647760 | ID=MS.gene98229.t1.exon1;Parent=MS.gene98229.t1 |
| chr7.1 | CDS | 57647760 | 57648164 | 57647760 | ID=cds.MS.gene98229.t1;Parent=MS.gene98229.t1 |
| chr7.1 | exon | 57646169 | 57646343 | 57646169 | ID=MS.gene98229.t1.exon2;Parent=MS.gene98229.t1 |
| chr7.1 | CDS | 57646169 | 57646343 | 57646169 | ID=cds.MS.gene98229.t1;Parent=MS.gene98229.t1 |
| chr7.1 | exon | 57645189 | 57645466 | 57645189 | ID=MS.gene98229.t1.exon3;Parent=MS.gene98229.t1 |
| chr7.1 | CDS | 57645189 | 57645466 | 57645189 | ID=cds.MS.gene98229.t1;Parent=MS.gene98229.t1 |
| chr7.1 | exon | 57644639 | 57644746 | 57644639 | ID=MS.gene98229.t1.exon4;Parent=MS.gene98229.t1 |
| chr7.1 | CDS | 57644639 | 57644746 | 57644639 | ID=cds.MS.gene98229.t1;Parent=MS.gene98229.t1 |
| Gene Sequence |
| Protein sequence |
