Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20081.t1 | XP_013443378.1 | 95.1 | 306 | 15 | 0 | 1 | 306 | 1 | 306 | 9.70E-160 | 572.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20081.t1 | Q8N5M1 | 31.6 | 225 | 144 | 5 | 83 | 305 | 47 | 263 | 8.7e-24 | 112.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20081.t1 | A0A072TKN2 | 95.1 | 306 | 15 | 0 | 1 | 306 | 1 | 306 | 7.0e-160 | 572.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63685 | MS.gene20081 | PPI |
| MS.gene20081 | MS.gene39553 | PPI |
| MS.gene20081 | MS.gene073885 | PPI |
| MS.gene20081 | MS.gene27265 | PPI |
| MS.gene20081 | MS.gene26425 | PPI |
| MS.gene20081 | MS.gene47555 | PPI |
| MS.gene20081 | MS.gene061619 | PPI |
| MS.gene20081 | MS.gene26606 | PPI |
| MS.gene20081 | MS.gene24232 | PPI |
| MS.gene20081 | MS.gene27003 | PPI |
| MS.gene20081 | MS.gene90723 | PPI |
| MS.gene20081 | MS.gene36891 | PPI |
| MS.gene20081 | MS.gene053439 | PPI |
| MS.gene20081 | MS.gene063717 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20081.t1 | MTR_0018s0290 | 95.098 | 306 | 15 | 0 | 1 | 306 | 1 | 306 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20081.t1 | AT5G40660 | 67.110 | 301 | 94 | 2 | 7 | 306 | 14 | 310 | 1.04e-139 | 397 |
Find 69 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAATGCTCAATAATTT+TGG | 0.051463 | 7.3:+61155860 | None:intergenic |
| GAGAGGGTGGATAGAAATTT+AGG | 0.167626 | 7.3:+61157721 | None:intergenic |
| CACTGGTTGGAGTCAGAATT+TGG | 0.210951 | 7.3:-61155033 | MS.gene20081:CDS |
| ATATTGACATAGCTGATATT+AGG | 0.257910 | 7.3:-61154311 | MS.gene20081:CDS |
| TAGACTTGAAGAAGATTTAC+AGG | 0.269964 | 7.3:-61154809 | MS.gene20081:intron |
| CACCGGAGTGTCCGGCGTTT+TGG | 0.294846 | 7.3:-61157694 | MS.gene20081:CDS |
| GACAGGTGGGGCCTTGTTGA+AGG | 0.349063 | 7.3:-61154342 | MS.gene20081:CDS |
| AGAGGGTGGATAGAAATTTA+GGG | 0.351887 | 7.3:+61157722 | None:intergenic |
| CTCCGCGGCGGCGGCCGACG+AGG | 0.401254 | 7.3:-61157671 | MS.gene20081:CDS |
| TTATCATTGTAGCAAATAGA+TGG | 0.410965 | 7.3:-61155954 | MS.gene20081:intron |
| GAAAACAGATGACTGTGAAT+TGG | 0.415426 | 7.3:-61154929 | MS.gene20081:CDS |
| TGCTTGCACTGCCTTGGAAA+GGG | 0.418660 | 7.3:-61155898 | MS.gene20081:CDS |
| TATTGACATAGCTGATATTA+GGG | 0.423099 | 7.3:-61154310 | MS.gene20081:intron |
| TTTATGACGGGATCGATTGT+AGG | 0.424513 | 7.3:-61157541 | MS.gene20081:CDS |
| GAGACTTGCTTGCACTGCCT+TGG | 0.428917 | 7.3:-61155904 | MS.gene20081:CDS |
| CACGGCAAAATACTAAATCT+TGG | 0.446774 | 7.3:+61155826 | None:intergenic |
| CGGGATCGATTGTAGGGAAA+AGG | 0.450926 | 7.3:-61157534 | MS.gene20081:CDS |
| CTCATAAGAGGCATTGTAAA+GGG | 0.454432 | 7.3:+61155924 | None:intergenic |
| TAACGCTATTGCTGCTGAAT+GGG | 0.455806 | 7.3:-61157389 | MS.gene20081:CDS |
| CTCCTCGTCGGCCGCCGCCG+CGG | 0.460829 | 7.3:+61157669 | None:intergenic |
| CTAACGCTATTGCTGCTGAA+TGG | 0.471281 | 7.3:-61157390 | MS.gene20081:CDS |
| AGCTTAAGCGGTCTCTTAGC+AGG | 0.471890 | 7.3:+61157430 | None:intergenic |
| CATCCCAAATTATAGCTGTC+AGG | 0.483049 | 7.3:-61154211 | MS.gene20081:intron |
| ATTAACAATTGCCATTGCAT+TGG | 0.483668 | 7.3:-61154872 | MS.gene20081:CDS |
| TTTGGTGGAAAGCAGGAAGA+TGG | 0.485177 | 7.3:-61154982 | MS.gene20081:CDS |
| CTTGCGAGTTCACTGTCATC+AGG | 0.496362 | 7.3:+61155801 | None:intergenic |
| TCTCAGCTCACCGGAGTGTC+CGG | 0.498918 | 7.3:-61157702 | MS.gene20081:CDS |
| AGGTGGGGCCTTGTTGAAGG+TGG | 0.501948 | 7.3:-61154339 | MS.gene20081:CDS |
| GATCCCGTCATAAAAGAAAT+CGG | 0.504982 | 7.3:+61157550 | None:intergenic |
| TTGCTTGCACTGCCTTGGAA+AGG | 0.505924 | 7.3:-61155899 | MS.gene20081:CDS |
| GACACTCCGGTGAGCTGAGA+GGG | 0.508697 | 7.3:+61157705 | None:intergenic |
| TATCAGCTATGTCAATATCA+TGG | 0.523346 | 7.3:+61154316 | None:intergenic |
| TTGCCATTGCATTGGTGCAT+GGG | 0.523502 | 7.3:-61154864 | MS.gene20081:CDS |
| TTATGACGGGATCGATTGTA+GGG | 0.523541 | 7.3:-61157540 | MS.gene20081:CDS |
| TCTCATAAGAGGCATTGTAA+AGG | 0.532856 | 7.3:+61155923 | None:intergenic |
| CCGCCGCGGAGCCAAAACGC+CGG | 0.535070 | 7.3:+61157683 | None:intergenic |
| TGATCCTCTACTACACTGGT+TGG | 0.535520 | 7.3:-61155046 | MS.gene20081:CDS |
| GTGCAAGCAAGTCTCATAAG+AGG | 0.536748 | 7.3:+61155912 | None:intergenic |
| AGTTTACGCCTCGCCGCAGT+CGG | 0.550895 | 7.3:+61157592 | None:intergenic |
| AAGACAAGAGAAGCGGATGA+TGG | 0.554937 | 7.3:-61157496 | MS.gene20081:CDS |
| ATTGCCATTGCATTGGTGCA+TGG | 0.557107 | 7.3:-61154865 | MS.gene20081:CDS |
| AGCCAAAACGCCGGACACTC+CGG | 0.558989 | 7.3:+61157692 | None:intergenic |
| ATCATCTTTCACATTCTCAT+CGG | 0.566012 | 7.3:-61157641 | MS.gene20081:CDS |
| ATCTTTCACATTCTCATCGG+AGG | 0.570107 | 7.3:-61157638 | MS.gene20081:CDS |
| AAGCGGATGATGGTAATGGT+TGG | 0.574002 | 7.3:-61157486 | MS.gene20081:CDS |
| AGAGAAGCGGATGATGGTAA+TGG | 0.574159 | 7.3:-61157490 | MS.gene20081:CDS |
| AAATTGATCCTCTACTACAC+TGG | 0.578145 | 7.3:-61155050 | MS.gene20081:CDS |
| GCGTTAGCAAGAGCAACAGT+AGG | 0.579760 | 7.3:+61157406 | None:intergenic |
| GACTCCAACCAGTGTAGTAG+AGG | 0.581369 | 7.3:+61155042 | None:intergenic |
| TGGAAAGGGTTCCTGTGACA+AGG | 0.585069 | 7.3:-61155884 | MS.gene20081:CDS |
| TATCCACCCTCTCAGCTCAC+CGG | 0.585445 | 7.3:-61157711 | MS.gene20081:CDS |
| CCGCAGTCGGTGATTTCACG+TGG | 0.590652 | 7.3:+61157605 | None:intergenic |
| TTTCCCATGCACCAATGCAA+TGG | 0.595226 | 7.3:+61154861 | None:intergenic |
| AGAAGTGAAGACAAGAGAAG+CGG | 0.606025 | 7.3:-61157503 | MS.gene20081:CDS |
| GCAGGAAGATGGTCTTGTGA+TGG | 0.606259 | 7.3:-61154971 | MS.gene20081:CDS |
| GAGGCGTAAACTGTCGTCGT+CGG | 0.606857 | 7.3:-61157581 | MS.gene20081:CDS |
| TGACAGTGAACTCGCAAGCA+TGG | 0.609118 | 7.3:-61155796 | MS.gene20081:CDS |
| TGTCACAGGAACCCTTTCCA+AGG | 0.620314 | 7.3:+61155887 | None:intergenic |
| GAACTCGCAAGCATGGTCCA+TGG | 0.622464 | 7.3:-61155789 | MS.gene20081:intron |
| ACTCCGGTGAGCTGAGAGGG+TGG | 0.626180 | 7.3:+61157708 | None:intergenic |
| TATCATGGCCACCTTCAACA+AGG | 0.639788 | 7.3:+61154331 | None:intergenic |
| GCAACAGTAGGAAGCTTAAG+CGG | 0.640307 | 7.3:+61157418 | None:intergenic |
| TGCTGCAATAGCATCAATTG+CGG | 0.640444 | 7.3:+61154906 | None:intergenic |
| GCATGGGAAATTGCAAATTG+AGG | 0.640793 | 7.3:-61154848 | MS.gene20081:CDS |
| GTTCACTGTCATCAGGAGCA+CGG | 0.645009 | 7.3:+61155808 | None:intergenic |
| CCACGTGAAATCACCGACTG+CGG | 0.654570 | 7.3:-61157605 | MS.gene20081:CDS |
| GGACACTCCGGTGAGCTGAG+AGG | 0.655400 | 7.3:+61157704 | None:intergenic |
| TGAAATCACCGACTGCGGCG+AGG | 0.686870 | 7.3:-61157600 | MS.gene20081:CDS |
| AGATGATGACTGCTCCTCGT+CGG | 0.687316 | 7.3:+61157657 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAAAATTTGTGA+AGG | + | chr7.3:61155825-61155844 | None:intergenic | 10.0% |
| !!! | AAGTTATTTTTTTTTTCATT+AGG | - | chr7.3:61154696-61154715 | MS.gene20081:intron | 10.0% |
| !!! | ACTTTATATTCTGTTTTATA+TGG | - | chr7.3:61155937-61155956 | MS.gene20081:CDS | 15.0% |
| !!! | ACTTTTAACATATCAATTTT+AGG | - | chr7.3:61156361-61156380 | MS.gene20081:intron | 15.0% |
| !!! | ATTAATTCATTTTTTCATGT+TGG | - | chr7.3:61156664-61156683 | MS.gene20081:intron | 15.0% |
| !! | AAATTATTCTTGATGAATTG+AGG | - | chr7.3:61155850-61155869 | MS.gene20081:CDS | 20.0% |
| !! | AAGTTATGATCAAATACAAT+CGG | - | chr7.3:61155717-61155736 | MS.gene20081:intron | 20.0% |
| !! | ATTTAGAAAAGTGATATTGA+TGG | - | chr7.3:61156417-61156436 | MS.gene20081:intron | 20.0% |
| !!! | ATCAAATGCTCAATAATTTT+GGG | + | chr7.3:61156112-61156131 | None:intergenic | 20.0% |
| !!! | CTTTTAAATATTTCCAATGA+CGG | + | chr7.3:61155904-61155923 | None:intergenic | 20.0% |
| !!! | GATTTTCTATTAGTTTACTT+AGG | - | chr7.3:61156610-61156629 | MS.gene20081:intron | 20.0% |
| !!! | TATTCTGTTTTATATGGTTA+TGG | - | chr7.3:61155943-61155962 | MS.gene20081:CDS | 20.0% |
| !!! | TGTGAAGGTTTTAATAAAAA+TGG | + | chr7.3:61155810-61155829 | None:intergenic | 20.0% |
| !!! | TTAACATATCAATTTTAGGA+TGG | - | chr7.3:61156365-61156384 | MS.gene20081:intron | 20.0% |
| ! | AGATATAGAGATTAATGAGT+TGG | - | chr7.3:61155156-61155175 | MS.gene20081:intron | 25.0% |
| ! | AGGATTGTAAGCTAATATTT+AGG | - | chr7.3:61155870-61155889 | MS.gene20081:CDS | 25.0% |
| ! | AGGTTAGTGTAAATGAAATT+TGG | - | chr7.3:61154716-61154735 | MS.gene20081:intron | 25.0% |
| ! | AGTACATGAATGTGAATTAT+AGG | - | chr7.3:61157285-61157304 | MS.gene20081:intron | 25.0% |
| ! | ATATTGACATAGCTGATATT+AGG | - | chr7.3:61157659-61157678 | MS.gene20081:CDS | 25.0% |
| ! | CACAAGATAAAATAGTAGTA+AGG | - | chr7.3:61155053-61155072 | MS.gene20081:CDS | 25.0% |
| ! | CATCAAAAACATTATTGTCT+TGG | - | chr7.3:61155766-61155785 | MS.gene20081:intron | 25.0% |
| ! | CGTCATTGGAAATATTTAAA+AGG | - | chr7.3:61155902-61155921 | MS.gene20081:CDS | 25.0% |
| ! | GTAGATAAGTTAATCAAAAG+AGG | - | chr7.3:61155373-61155392 | MS.gene20081:intron | 25.0% |
| ! | TAAAGCTAATTGAAAAGTCA+AGG | - | chr7.3:61155650-61155669 | MS.gene20081:intron | 25.0% |
| ! | TAAGGTTTCTAACAGAAAAT+AGG | + | chr7.3:61157439-61157458 | None:intergenic | 25.0% |
| ! | TATTGACATAGCTGATATTA+GGG | - | chr7.3:61157660-61157679 | MS.gene20081:CDS | 25.0% |
| ! | TTATCATTGTAGCAAATAGA+TGG | - | chr7.3:61156016-61156035 | MS.gene20081:intron | 25.0% |
| !! | AGAGAAGAATTTTATGATGT+GGG | - | chr7.3:61157356-61157375 | MS.gene20081:intron | 25.0% |
| !! | CATCAAATGCTCAATAATTT+TGG | + | chr7.3:61156113-61156132 | None:intergenic | 25.0% |
| !! | GTTTCTGTTATAGTTTTTCT+AGG | + | chr7.3:61155127-61155146 | None:intergenic | 25.0% |
| !! | TAGAGAAGAATTTTATGATG+TGG | - | chr7.3:61157355-61157374 | MS.gene20081:intron | 25.0% |
| !! | TCTGTTATCCTAAAAAGTAT+TGG | + | chr7.3:61156827-61156846 | None:intergenic | 25.0% |
| !!! | AAAAGTGATATTGATGGTTT+TGG | - | chr7.3:61156423-61156442 | MS.gene20081:intron | 25.0% |
| !!! | AAAGTGATATTGATGGTTTT+GGG | - | chr7.3:61156424-61156443 | MS.gene20081:intron | 25.0% |
| !!! | AATATTTTAGCTTTACCTAC+TGG | - | chr7.3:61156764-61156783 | MS.gene20081:intron | 25.0% |
| !!! | ATTTTTTCATGTTGGCTATA+TGG | - | chr7.3:61156672-61156691 | MS.gene20081:intron | 25.0% |
| AAGGATAGTCATATCACTAA+AGG | - | chr7.3:61155091-61155110 | MS.gene20081:intron | 30.0% | |
| AATAATTCTATCACTCCAGT+AGG | + | chr7.3:61156782-61156801 | None:intergenic | 30.0% | |
| AATGTGAATTATAGGACTCT+TGG | - | chr7.3:61157293-61157312 | MS.gene20081:intron | 30.0% | |
| AATTATAGGACTCTTGGTTT+GGG | - | chr7.3:61157299-61157318 | MS.gene20081:intron | 30.0% | |
| ATCATCTTTCACATTCTCAT+CGG | - | chr7.3:61154329-61154348 | MS.gene20081:CDS | 30.0% | |
| ATCTTCTCTCTATGACAATA+AGG | - | chr7.3:61156538-61156557 | MS.gene20081:intron | 30.0% | |
| ATTAACAATTGCCATTGCAT+TGG | - | chr7.3:61157098-61157117 | MS.gene20081:intron | 30.0% | |
| GAAATTGTTAGAATATGCGA+GGG | - | chr7.3:61157378-61157397 | MS.gene20081:intron | 30.0% | |
| TAAATAGTTTCCATTGCCAT+AGG | + | chr7.3:61156462-61156481 | None:intergenic | 30.0% | |
| TACCATATTAAGCTTAGTTG+CGG | + | chr7.3:61157333-61157352 | None:intergenic | 30.0% | |
| TAGACTTGAAGAAGATTTAC+AGG | - | chr7.3:61157161-61157180 | MS.gene20081:intron | 30.0% | |
| TATCAGCTATGTCAATATCA+TGG | + | chr7.3:61157657-61157676 | None:intergenic | 30.0% | |
| TATTTGATCATAACTTTCCG+TGG | + | chr7.3:61155713-61155732 | None:intergenic | 30.0% | |
| TCTCTCTTCTCTCTTAATTT+GGG | - | chr7.3:61157550-61157569 | MS.gene20081:CDS | 30.0% | |
| TGAATAATCAGCTAAATTGC+AGG | - | chr7.3:61156581-61156600 | MS.gene20081:intron | 30.0% | |
| TGCTTATTATATGAGCTGTT+AGG | - | chr7.3:61155015-61155034 | MS.gene20081:CDS | 30.0% | |
| TTATATGGTTATGGTTGCAT+AGG | - | chr7.3:61155952-61155971 | MS.gene20081:intron | 30.0% | |
| TTCTCTCTTCTCTCTTAATT+TGG | - | chr7.3:61157549-61157568 | MS.gene20081:CDS | 30.0% | |
| ! | AAGTCTTATGTCACTAAGTA+GGG | + | chr7.3:61155217-61155236 | None:intergenic | 30.0% |
| ! | ATGCTTTACCAAAACTTGTT+TGG | + | chr7.3:61154915-61154934 | None:intergenic | 30.0% |
| ! | ATGTCTTCATTCTCTTTTTC+AGG | - | chr7.3:61157603-61157622 | MS.gene20081:CDS | 30.0% |
| ! | TAATGAGTTGGACTGAATTA+TGG | - | chr7.3:61155168-61155187 | MS.gene20081:intron | 30.0% |
| !! | AAGTGATATTGATGGTTTTG+GGG | - | chr7.3:61156425-61156444 | MS.gene20081:intron | 30.0% |
| !! | CTTGTTGACCAATACTTTTT+AGG | - | chr7.3:61156816-61156835 | MS.gene20081:intron | 30.0% |
| AAAAAGCTGGAGTATACAAC+AGG | + | chr7.3:61156970-61156989 | None:intergenic | 35.0% | |
| AAAAGAGAAGACTGTCTCTA+AGG | + | chr7.3:61157457-61157476 | None:intergenic | 35.0% | |
| AAAATCCTACCACATGATGA+AGG | + | chr7.3:61155423-61155442 | None:intergenic | 35.0% | |
| AAATCCTACCACATGATGAA+GGG | + | chr7.3:61155422-61155441 | None:intergenic | 35.0% | |
| AAATTGATCCTCTACTACAC+TGG | - | chr7.3:61156920-61156939 | MS.gene20081:intron | 35.0% | |
| AAGGAGAGTAGATTAGATGA+AGG | - | chr7.3:61155072-61155091 | MS.gene20081:intron | 35.0% | |
| AATAAATCTAAGTTGCCTCG+AGG | - | chr7.3:61155501-61155520 | MS.gene20081:intron | 35.0% | |
| AATATTTCCAATGACGGTCA+AGG | + | chr7.3:61155898-61155917 | None:intergenic | 35.0% | |
| ACCATATTAAGCTTAGTTGC+GGG | + | chr7.3:61157332-61157351 | None:intergenic | 35.0% | |
| ACTAAGTAGGGTCAGTTATA+TGG | + | chr7.3:61155205-61155224 | None:intergenic | 35.0% | |
| AGAGGGTGGATAGAAATTTA+GGG | + | chr7.3:61154251-61154270 | None:intergenic | 35.0% | |
| ATAAATCTAAGTTGCCTCGA+GGG | - | chr7.3:61155502-61155521 | MS.gene20081:intron | 35.0% | |
| ATATTTCCAATGACGGTCAA+GGG | + | chr7.3:61155897-61155916 | None:intergenic | 35.0% | |
| ATTGAGATCAGAGATCTGAA+AGG | + | chr7.3:61156232-61156251 | None:intergenic | 35.0% | |
| CAATAACTAACACCATACCA+TGG | + | chr7.3:61156201-61156220 | None:intergenic | 35.0% | |
| CACGGCAAAATACTAAATCT+TGG | + | chr7.3:61156147-61156166 | None:intergenic | 35.0% | |
| CATCCTGACAGCTATAATTT+GGG | + | chr7.3:61157765-61157784 | None:intergenic | 35.0% | |
| CTACTTAGTGACATAAGACT+TGG | - | chr7.3:61155216-61155235 | MS.gene20081:intron | 35.0% | |
| CTGAATGGGATTATCAAGTA+TGG | - | chr7.3:61154595-61154614 | MS.gene20081:intron | 35.0% | |
| CTGAGTATACTGAACTTGAA+GGG | - | chr7.3:61156285-61156304 | MS.gene20081:intron | 35.0% | |
| GAAAACAGATGACTGTGAAT+TGG | - | chr7.3:61157041-61157060 | MS.gene20081:intron | 35.0% | |
| GAAGAAGATTTACAGGTACT+TGG | - | chr7.3:61157168-61157187 | MS.gene20081:intron | 35.0% | |
| GAATTATAGGACTCTTGGTT+TGG | - | chr7.3:61157298-61157317 | MS.gene20081:intron | 35.0% | |
| GATCCCGTCATAAAAGAAAT+CGG | + | chr7.3:61154423-61154442 | None:intergenic | 35.0% | |
| GCATAGCTCATTTACCTATA+TGG | - | chr7.3:61154931-61154950 | MS.gene20081:CDS | 35.0% | |
| GGAAATTGTTAGAATATGCG+AGG | - | chr7.3:61157377-61157396 | MS.gene20081:intron | 35.0% | |
| GGGAAAATATATGTTGAGTG+AGG | - | chr7.3:61155463-61155482 | MS.gene20081:intron | 35.0% | |
| TAATCAAAAGAGGTCCTAAG+TGG | - | chr7.3:61155383-61155402 | MS.gene20081:intron | 35.0% | |
| TACTTAGGTCTATATGTCTC+AGG | - | chr7.3:61156625-61156644 | MS.gene20081:intron | 35.0% | |
| TAGAATATGCGAGGGAATAT+AGG | - | chr7.3:61157386-61157405 | MS.gene20081:CDS | 35.0% | |
| TCATCCTGACAGCTATAATT+TGG | + | chr7.3:61157766-61157785 | None:intergenic | 35.0% | |
| TGATTCATCTGTGCTTCATT+GGG | - | chr7.3:61154625-61154644 | MS.gene20081:intron | 35.0% | |
| TTGATTCATCTGTGCTTCAT+TGG | - | chr7.3:61154624-61154643 | MS.gene20081:intron | 35.0% | |
| ! | ATGATTTTCAGAAAGATGCG+TGG | - | chr7.3:61156854-61156873 | MS.gene20081:intron | 35.0% |
| ! | CAAGTCTTATGTCACTAAGT+AGG | + | chr7.3:61155218-61155237 | None:intergenic | 35.0% |
| ! | CATAGATGCCAAACAAGTTT+TGG | - | chr7.3:61154904-61154923 | MS.gene20081:CDS | 35.0% |
| ! | GAGGATCAATTTTCTCAACT+TGG | + | chr7.3:61156912-61156931 | None:intergenic | 35.0% |
| !! | ACCTATATGGTGTTGCATTA+AGG | - | chr7.3:61154944-61154963 | MS.gene20081:CDS | 35.0% |
| !! | CTCATAAGAGGCATTGTAAA+GGG | + | chr7.3:61156049-61156068 | None:intergenic | 35.0% |
| !! | TCTCATAAGAGGCATTGTAA+AGG | + | chr7.3:61156050-61156069 | None:intergenic | 35.0% |
| !!! | ATGCCGATTTCTTTTATGAC+GGG | - | chr7.3:61154417-61154436 | MS.gene20081:intron | 35.0% |
| !!! | GATGCCGATTTCTTTTATGA+CGG | - | chr7.3:61154416-61154435 | MS.gene20081:intron | 35.0% |
| !!! | GTTGTATACTCCAGCTTTTT+TGG | - | chr7.3:61156970-61156989 | MS.gene20081:intron | 35.0% |
| !!! | TCTTCATTCTCTTTTTCAGG+TGG | - | chr7.3:61157606-61157625 | MS.gene20081:CDS | 35.0% |
| AATAACAGCTTCCACAGATG+AGG | + | chr7.3:61156739-61156758 | None:intergenic | 40.0% | |
| ACTAAAGTCCCTTCATCATG+TGG | - | chr7.3:61155411-61155430 | MS.gene20081:intron | 40.0% | |
| AGAAGTGAAGACAAGAGAAG+CGG | - | chr7.3:61154467-61154486 | MS.gene20081:intron | 40.0% | |
| ATCCCAGAGAAAATGCTCAT+CGG | + | chr7.3:61157480-61157499 | None:intergenic | 40.0% | |
| ATCTTTCACATTCTCATCGG+AGG | - | chr7.3:61154332-61154351 | MS.gene20081:CDS | 40.0% | |
| CATCCCAAATTATAGCTGTC+AGG | - | chr7.3:61157759-61157778 | MS.gene20081:CDS | 40.0% | |
| CCATATTAAGCTTAGTTGCG+GGG | + | chr7.3:61157331-61157350 | None:intergenic | 40.0% | |
| CTTCATGTTTACCTCATCTG+TGG | - | chr7.3:61156725-61156744 | MS.gene20081:intron | 40.0% | |
| GACAAACCAAGAAATGCAAC+TGG | + | chr7.3:61157700-61157719 | None:intergenic | 40.0% | |
| GACTTTAGTACCTACCACTT+AGG | + | chr7.3:61155400-61155419 | None:intergenic | 40.0% | |
| GAGAGGGTGGATAGAAATTT+AGG | + | chr7.3:61154252-61154271 | None:intergenic | 40.0% | |
| GCATGGGAAATTGCAAATTG+AGG | - | chr7.3:61157122-61157141 | MS.gene20081:intron | 40.0% | |
| GCCTTAATGCAACACCATAT+AGG | + | chr7.3:61154948-61154967 | None:intergenic | 40.0% | |
| GCTGAGTATACTGAACTTGA+AGG | - | chr7.3:61156284-61156303 | MS.gene20081:intron | 40.0% | |
| GGTGCAGTGATTACTATACA+GGG | - | chr7.3:61156502-61156521 | MS.gene20081:intron | 40.0% | |
| GTATAGTAATCACTGCACCA+AGG | + | chr7.3:61156501-61156520 | None:intergenic | 40.0% | |
| TAAATCTAAGTTGCCTCGAG+GGG | - | chr7.3:61155503-61155522 | MS.gene20081:intron | 40.0% | |
| TAACGCTATTGCTGCTGAAT+GGG | - | chr7.3:61154581-61154600 | MS.gene20081:intron | 40.0% | |
| TACTCAGCATGTATTTCGTC+AGG | + | chr7.3:61156272-61156291 | None:intergenic | 40.0% | |
| TCATCACCAGTTGCATTTCT+TGG | - | chr7.3:61157691-61157710 | MS.gene20081:CDS | 40.0% | |
| TGCTGCAATAGCATCAATTG+CGG | + | chr7.3:61157067-61157086 | None:intergenic | 40.0% | |
| TGGTGCAGTGATTACTATAC+AGG | - | chr7.3:61156501-61156520 | MS.gene20081:intron | 40.0% | |
| TGTATTTCGTCAGGCAATCA+CGG | + | chr7.3:61156263-61156282 | None:intergenic | 40.0% | |
| TTAGGTCTATATGTCTCAGG+AGG | - | chr7.3:61156628-61156647 | MS.gene20081:intron | 40.0% | |
| TTGTTTGTCCAACTCCAAAC+AGG | + | chr7.3:61154970-61154989 | None:intergenic | 40.0% | |
| ! | AAGTTCTACAGTTCTGACCT+TGG | - | chr7.3:61156481-61156500 | MS.gene20081:intron | 40.0% |
| ! | ATTTTCCCATACACATAGCC+AGG | + | chr7.3:61155451-61155470 | None:intergenic | 40.0% |
| ! | TTATGACGGGATCGATTGTA+GGG | - | chr7.3:61154430-61154449 | MS.gene20081:intron | 40.0% |
| ! | TTCCGATGAGCATTTTCTCT+GGG | - | chr7.3:61157475-61157494 | MS.gene20081:CDS | 40.0% |
| ! | TTTATGACGGGATCGATTGT+AGG | - | chr7.3:61154429-61154448 | MS.gene20081:intron | 40.0% |
| ! | TTTCCGATGAGCATTTTCTC+TGG | - | chr7.3:61157474-61157493 | MS.gene20081:CDS | 40.0% |
| ! | TTTTCCCATACACATAGCCA+GGG | + | chr7.3:61155450-61155469 | None:intergenic | 40.0% |
| !! | ATAATTTTGGGCCTTGTCAC+AGG | + | chr7.3:61156100-61156119 | None:intergenic | 40.0% |
| !! | TCTTGGCATATTTGCTGTTG+CGG | - | chr7.3:61155783-61155802 | MS.gene20081:intron | 40.0% |
| !!! | ATTCTCTTTTTCAGGTGGAC+AGG | - | chr7.3:61157611-61157630 | MS.gene20081:CDS | 40.0% |
| !!! | ATTGATGGTTTTGGGGTCAT+AGG | - | chr7.3:61156432-61156451 | MS.gene20081:intron | 40.0% |
| !!! | CATTTTCTCTGGGATTACAC+GGG | - | chr7.3:61157485-61157504 | MS.gene20081:CDS | 40.0% |
| !!! | GCATTTTCTCTGGGATTACA+CGG | - | chr7.3:61157484-61157503 | MS.gene20081:CDS | 40.0% |
| !!! | GTATACTCCAGCTTTTTTGG+TGG | - | chr7.3:61156973-61156992 | MS.gene20081:intron | 40.0% |
| AAGACAAGAGAAGCGGATGA+TGG | - | chr7.3:61154474-61154493 | MS.gene20081:intron | 45.0% | |
| AAGTCCCTTCATCATGTGGT+AGG | - | chr7.3:61155415-61155434 | MS.gene20081:intron | 45.0% | |
| AATATCCGTGCTTCACGGTT+TGG | + | chr7.3:61154760-61154779 | None:intergenic | 45.0% | |
| AGTTGCATGTGGGGATACTT+TGG | - | chr7.3:61155536-61155555 | MS.gene20081:intron | 45.0% | |
| CAAAAGAGGTCCTAAGTGGT+AGG | - | chr7.3:61155387-61155406 | MS.gene20081:intron | 45.0% | |
| CCCCGCAACTAAGCTTAATA+TGG | - | chr7.3:61157328-61157347 | MS.gene20081:intron | 45.0% | |
| CTAACGCTATTGCTGCTGAA+TGG | - | chr7.3:61154580-61154599 | MS.gene20081:intron | 45.0% | |
| CTATCCCTGGCTATGTGTAT+GGG | - | chr7.3:61155443-61155462 | MS.gene20081:intron | 45.0% | |
| CTGCTTTCCACCAAAAAAGC+TGG | + | chr7.3:61156983-61157002 | None:intergenic | 45.0% | |
| GCAACAGTAGGAAGCTTAAG+CGG | + | chr7.3:61154555-61154574 | None:intergenic | 45.0% | |
| GCATTGAAACCTCACTACCA+CGG | - | chr7.3:61155693-61155712 | MS.gene20081:intron | 45.0% | |
| GTGCAAGCAAGTCTCATAAG+AGG | + | chr7.3:61156061-61156080 | None:intergenic | 45.0% | |
| GTGTCAATATCCGTGCTTCA+CGG | + | chr7.3:61154765-61154784 | None:intergenic | 45.0% | |
| GTGTTGCATTAAGGCCTGTT+TGG | - | chr7.3:61154953-61154972 | MS.gene20081:CDS | 45.0% | |
| TATCATGGCCACCTTCAACA+AGG | + | chr7.3:61157642-61157661 | None:intergenic | 45.0% | |
| TCTATCCCTGGCTATGTGTA+TGG | - | chr7.3:61155442-61155461 | MS.gene20081:intron | 45.0% | |
| TGAAGCACGGATATTGACAC+CGG | - | chr7.3:61154765-61154784 | MS.gene20081:intron | 45.0% | |
| TGATCCTCTACTACACTGGT+TGG | - | chr7.3:61156924-61156943 | MS.gene20081:intron | 45.0% | |
| TTTCCCATGCACCAATGCAA+TGG | + | chr7.3:61157112-61157131 | None:intergenic | 45.0% | |
| TTTGGTGGAAAGCAGGAAGA+TGG | - | chr7.3:61156988-61157007 | MS.gene20081:intron | 45.0% | |
| ! | AGAGAAGCGGATGATGGTAA+TGG | - | chr7.3:61154480-61154499 | MS.gene20081:intron | 45.0% |
| ! | ATACTGAACTTGAAGGGTGC+TGG | - | chr7.3:61156291-61156310 | MS.gene20081:intron | 45.0% |
| ! | ATTGCCATTGCATTGGTGCA+TGG | - | chr7.3:61157105-61157124 | MS.gene20081:intron | 45.0% |
| ! | CACTGGTTGGAGTCAGAATT+TGG | - | chr7.3:61156937-61156956 | MS.gene20081:intron | 45.0% |
| ! | CATAACTTTCCGTGGTAGTG+AGG | + | chr7.3:61155705-61155724 | None:intergenic | 45.0% |
| ! | CATTAAGGCCTGTTTGGAGT+TGG | - | chr7.3:61154959-61154978 | MS.gene20081:CDS | 45.0% |
| ! | GTGGTAGGATTTTCTATCCC+TGG | - | chr7.3:61155430-61155449 | MS.gene20081:intron | 45.0% |
| ! | TTGCCATTGCATTGGTGCAT+GGG | - | chr7.3:61157106-61157125 | MS.gene20081:intron | 45.0% |
| !! | AAGCGGATGATGGTAATGGT+TGG | - | chr7.3:61154484-61154503 | MS.gene20081:intron | 45.0% |
| !! | TACTGAACTTGAAGGGTGCT+GGG | - | chr7.3:61156292-61156311 | MS.gene20081:intron | 45.0% |
| !!! | CAGCTTTTTTGGTGGAAAGC+AGG | - | chr7.3:61156981-61157000 | MS.gene20081:intron | 45.0% |
| !!! | TCTTTTTCAGGTGGACAGGT+GGG | - | chr7.3:61157615-61157634 | MS.gene20081:CDS | 45.0% |
| !! | AAAAAATGAATTAATATTTA+TGG | + | chr7.3:61156659-61156678 | None:intergenic | 5.0% |
| AGATGATGACTGCTCCTCGT+CGG | + | chr7.3:61154316-61154335 | None:intergenic | 50.0% | |
| AGCTTAAGCGGTCTCTTAGC+AGG | + | chr7.3:61154543-61154562 | None:intergenic | 50.0% | |
| ATAGGAGCAGAGAGGAGAGT+GGG | - | chr7.3:61157404-61157423 | MS.gene20081:CDS | 50.0% | |
| CATAGGCTTGCCTATGGCAA+TGG | - | chr7.3:61156449-61156468 | MS.gene20081:intron | 50.0% | |
| CGGGATCGATTGTAGGGAAA+AGG | - | chr7.3:61154436-61154455 | MS.gene20081:intron | 50.0% | |
| CTTGCGAGTTCACTGTCATC+AGG | + | chr7.3:61156172-61156191 | None:intergenic | 50.0% | |
| GAATGCCAAACCGTGAAGCA+CGG | - | chr7.3:61154752-61154771 | MS.gene20081:intron | 50.0% | |
| GACTCCAACCAGTGTAGTAG+AGG | + | chr7.3:61156931-61156950 | None:intergenic | 50.0% | |
| GAGGGAATATAGGAGCAGAG+AGG | - | chr7.3:61157396-61157415 | MS.gene20081:CDS | 50.0% | |
| GCACAGACACTCCTCGAATT+AGG | + | chr7.3:61154882-61154901 | None:intergenic | 50.0% | |
| GCGTTAGCAAGAGCAACAGT+AGG | + | chr7.3:61154567-61154586 | None:intergenic | 50.0% | |
| GTTCACTGTCATCAGGAGCA+CGG | + | chr7.3:61156165-61156184 | None:intergenic | 50.0% | |
| TAAGCTTAGTTGCGGGGCTT+AGG | + | chr7.3:61157325-61157344 | None:intergenic | 50.0% | |
| TATAGGAGCAGAGAGGAGAG+TGG | - | chr7.3:61157403-61157422 | MS.gene20081:CDS | 50.0% | |
| TCTCAACTTGGCGTTCTGCA+AGG | + | chr7.3:61156900-61156919 | None:intergenic | 50.0% | |
| TGACAGTGAACTCGCAAGCA+TGG | - | chr7.3:61156174-61156193 | MS.gene20081:intron | 50.0% | |
| TGCTTGCACTGCCTTGGAAA+GGG | - | chr7.3:61156072-61156091 | MS.gene20081:intron | 50.0% | |
| TGGAAAGGGTTCCTGTGACA+AGG | - | chr7.3:61156086-61156105 | MS.gene20081:intron | 50.0% | |
| TGTCACAGGAACCCTTTCCA+AGG | + | chr7.3:61156086-61156105 | None:intergenic | 50.0% | |
| TTAGGTCCCTTGACCGTCAT+TGG | - | chr7.3:61155888-61155907 | MS.gene20081:CDS | 50.0% | |
| TTGCTTGCACTGCCTTGGAA+AGG | - | chr7.3:61156071-61156090 | MS.gene20081:intron | 50.0% | |
| ! | AATCGGTTCAGCTGCAGTTG+GGG | - | chr7.3:61155734-61155753 | MS.gene20081:intron | 50.0% |
| ! | ACAATCGGTTCAGCTGCAGT+TGG | - | chr7.3:61155732-61155751 | MS.gene20081:intron | 50.0% |
| ! | CAATCGGTTCAGCTGCAGTT+GGG | - | chr7.3:61155733-61155752 | MS.gene20081:intron | 50.0% |
| !! | ACTGAACTTGAAGGGTGCTG+GGG | - | chr7.3:61156293-61156312 | MS.gene20081:intron | 50.0% |
| !! | GCAGGAAGATGGTCTTGTGA+TGG | - | chr7.3:61156999-61157018 | MS.gene20081:intron | 50.0% |
| !!! | CTCTTTTTCAGGTGGACAGG+TGG | - | chr7.3:61157614-61157633 | MS.gene20081:CDS | 50.0% |
| !!! | CTTTTTCAGGTGGACAGGTG+GGG | - | chr7.3:61157616-61157635 | MS.gene20081:CDS | 50.0% |
| AAGTGTCACGTGTCCGACAC+GGG | - | chr7.3:61154850-61154869 | MS.gene20081:CDS | 55.0% | |
| AATTAGGCGTGTCCCCGTGT+CGG | + | chr7.3:61154866-61154885 | None:intergenic | 55.0% | |
| CAAGTGTCACGTGTCCGACA+CGG | - | chr7.3:61154849-61154868 | MS.gene20081:CDS | 55.0% | |
| CGCAAGCATGGTCCATGGTA+TGG | - | chr7.3:61156186-61156205 | MS.gene20081:intron | 55.0% | |
| CGGATATTGACACCGGACAC+TGG | - | chr7.3:61154772-61154791 | MS.gene20081:intron | 55.0% | |
| CTAGCGTCGCAGTTGCATGT+GGG | - | chr7.3:61155526-61155545 | MS.gene20081:intron | 55.0% | |
| GAACTCGCAAGCATGGTCCA+TGG | - | chr7.3:61156181-61156200 | MS.gene20081:intron | 55.0% | |
| GAGGCGTAAACTGTCGTCGT+CGG | - | chr7.3:61154389-61154408 | MS.gene20081:intron | 55.0% | |
| TAGCGTCGCAGTTGCATGTG+GGG | - | chr7.3:61155527-61155546 | MS.gene20081:intron | 55.0% | |
| TAGGAGCAGAGAGGAGAGTG+GGG | - | chr7.3:61157405-61157424 | MS.gene20081:CDS | 55.0% | |
| TATCCACCCTCTCAGCTCAC+CGG | - | chr7.3:61154259-61154278 | MS.gene20081:intron | 55.0% | |
| TGGGGTCATAGGCTTGCCTA+TGG | - | chr7.3:61156443-61156462 | MS.gene20081:intron | 55.0% | |
| TGTGTCAGCATGCCAGTGTC+CGG | + | chr7.3:61154787-61154806 | None:intergenic | 55.0% | |
| ! | CCACGTGAAATCACCGACTG+CGG | - | chr7.3:61154365-61154384 | MS.gene20081:intron | 55.0% |
| ! | GAGACTTGCTTGCACTGCCT+TGG | - | chr7.3:61156066-61156085 | MS.gene20081:intron | 55.0% |
| ACGGGGACACGCCTAATTCG+AGG | - | chr7.3:61154868-61154887 | MS.gene20081:CDS | 60.0% | |
| AGCCAAAACGCCGGACACTC+CGG | + | chr7.3:61154281-61154300 | None:intergenic | 60.0% | |
| AGCTGCAGTTGGGGTCGCAA+AGG | - | chr7.3:61155743-61155762 | MS.gene20081:intron | 60.0% | |
| AGGAGCAGAGAGGAGAGTGG+GGG | - | chr7.3:61157406-61157425 | MS.gene20081:CDS | 60.0% | |
| AGTGTCACGTGTCCGACACG+GGG | - | chr7.3:61154851-61154870 | MS.gene20081:CDS | 60.0% | |
| AGTTTACGCCTCGCCGCAGT+CGG | + | chr7.3:61154381-61154400 | None:intergenic | 60.0% | |
| CCGCAGTCGGTGATTTCACG+TGG | + | chr7.3:61154368-61154387 | None:intergenic | 60.0% | |
| GACACTCCGGTGAGCTGAGA+GGG | + | chr7.3:61154268-61154287 | None:intergenic | 60.0% | |
| GCTAGCGTCGCAGTTGCATG+TGG | - | chr7.3:61155525-61155544 | MS.gene20081:intron | 60.0% | |
| ! | TCTCAGCTCACCGGAGTGTC+CGG | - | chr7.3:61154268-61154287 | MS.gene20081:intron | 60.0% |
| ! | TGAAATCACCGACTGCGGCG+AGG | - | chr7.3:61154370-61154389 | MS.gene20081:intron | 60.0% |
| !! | AGGTGGGGCCTTGTTGAAGG+TGG | - | chr7.3:61157631-61157650 | MS.gene20081:CDS | 60.0% |
| !! | GACAGGTGGGGCCTTGTTGA+AGG | - | chr7.3:61157628-61157647 | MS.gene20081:CDS | 60.0% |
| ACTCCGGTGAGCTGAGAGGG+TGG | + | chr7.3:61154265-61154284 | None:intergenic | 65.0% | |
| GGACACTCCGGTGAGCTGAG+AGG | + | chr7.3:61154269-61154288 | None:intergenic | 65.0% | |
| !! | CACCGGAGTGTCCGGCGTTT+TGG | - | chr7.3:61154276-61154295 | MS.gene20081:intron | 65.0% |
| !!! | TGTCCGGCGTTTTGGCTCCG+CGG | - | chr7.3:61154284-61154303 | MS.gene20081:intron | 65.0% |
| ACTGCGACGCTAGCCCCTCG+AGG | + | chr7.3:61155519-61155538 | None:intergenic | 70.0% | |
| CCGCCGCGGAGCCAAAACGC+CGG | + | chr7.3:61154290-61154309 | None:intergenic | 75.0% | |
| !!! | CCGGCGTTTTGGCTCCGCGG+CGG | - | chr7.3:61154287-61154306 | MS.gene20081:intron | 75.0% |
| !!! | GCGTTTTGGCTCCGCGGCGG+CGG | - | chr7.3:61154290-61154309 | MS.gene20081:intron | 75.0% |
| ! | CTCCTCGTCGGCCGCCGCCG+CGG | + | chr7.3:61154304-61154323 | None:intergenic | 85.0% |
| ! | CTCCGCGGCGGCGGCCGACG+AGG | - | chr7.3:61154299-61154318 | MS.gene20081:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 61154207 | 61157785 | 61154207 | ID=MS.gene20081 |
| chr7.3 | mRNA | 61154207 | 61157785 | 61154207 | ID=MS.gene20081.t1;Parent=MS.gene20081 |
| chr7.3 | exon | 61157381 | 61157785 | 61157381 | ID=MS.gene20081.t1.exon1;Parent=MS.gene20081.t1 |
| chr7.3 | CDS | 61157381 | 61157785 | 61157381 | ID=cds.MS.gene20081.t1;Parent=MS.gene20081.t1 |
| chr7.3 | exon | 61155790 | 61155964 | 61155790 | ID=MS.gene20081.t1.exon2;Parent=MS.gene20081.t1 |
| chr7.3 | CDS | 61155790 | 61155964 | 61155790 | ID=cds.MS.gene20081.t1;Parent=MS.gene20081.t1 |
| chr7.3 | exon | 61154810 | 61155087 | 61154810 | ID=MS.gene20081.t1.exon3;Parent=MS.gene20081.t1 |
| chr7.3 | CDS | 61154810 | 61155087 | 61154810 | ID=cds.MS.gene20081.t1;Parent=MS.gene20081.t1 |
| chr7.3 | exon | 61154311 | 61154367 | 61154311 | ID=MS.gene20081.t1.exon4;Parent=MS.gene20081.t1 |
| chr7.3 | CDS | 61154311 | 61154367 | 61154311 | ID=cds.MS.gene20081.t1;Parent=MS.gene20081.t1 |
| chr7.3 | exon | 61154207 | 61154218 | 61154207 | ID=MS.gene20081.t1.exon5;Parent=MS.gene20081.t1 |
| chr7.3 | CDS | 61154207 | 61154218 | 61154207 | ID=cds.MS.gene20081.t1;Parent=MS.gene20081.t1 |
| Gene Sequence |
| Protein sequence |
