AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26606

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26606.t1 MTR_4g087955 93.600 250 16 0 1 250 1 250 8.03e-179 491
MS.gene26606.t1 MTR_1g097870 58.416 101 24 2 150 250 62 144 8.24e-32 114
MS.gene26606.t1 MTR_1g097880 51.064 94 28 4 36 129 2 77 4.69e-19 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26606.t1 AT2G34050 73.206 209 56 0 42 250 40 248 2.96e-118 338

Find 55 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCGGTTGATGGAATTTC+TGG 0.191016 4.1:-22398203 None:intergenic
TATCTTCAACCTCCAGAATT+TGG 0.194257 4.1:+22398088 MS.gene26606:CDS
ATTGAAAATGGTTACAAAAT+AGG 0.236464 4.1:-22400804 None:intergenic
TGCTATGGTTCTCCAAATTC+TGG 0.304753 4.1:-22398100 None:intergenic
CTGAAAATATCACTTCCATT+TGG 0.350306 4.1:+22398358 MS.gene26606:CDS
TGCAGGGGAGTTGCGGTTGA+TGG 0.354027 4.1:-22398212 None:intergenic
TGAAAATATCACTTCCATTT+GGG 0.358159 4.1:+22398359 MS.gene26606:CDS
ACCCCATTTCAGAAAATTGC+AGG 0.375367 4.1:-22398229 None:intergenic
TCCAAGTGAATTTGAGTTCA+AGG 0.383385 4.1:+22400758 MS.gene26606:CDS
GTAAAATGATACAGTATAGT+AGG 0.387097 4.1:-22400577 None:intergenic
CTCCGAGTCAGTCAGCTTGC+TGG 0.395915 4.1:-22400655 None:intergenic
AGCAAGTCTTTATCACTTGC+TGG 0.405466 4.1:+22398732 MS.gene26606:CDS
TCCTTTGCAACTCAAGCCAT+TGG 0.422997 4.1:+22398296 MS.gene26606:CDS
CAGAAACTGTTGTGAAAGAA+TGG 0.433681 4.1:-22398167 None:intergenic
ACAAAGGAATGACAAAATAT+CGG 0.436244 4.1:-22398856 None:intergenic
CACATAGGTAGAGGTCATAT+TGG 0.436318 4.1:+22398697 MS.gene26606:CDS
ATTCCTTTGTGGAGGGGAAG+TGG 0.451596 4.1:+22398869 MS.gene26606:CDS
TTTCTGAAATGGGGTTCGCT+TGG 0.455854 4.1:+22398237 MS.gene26606:CDS
TATATAACAATGTTTGTTCA+AGG 0.456491 4.1:+22398893 MS.gene26606:CDS
TGACTGACTCGGAGGCGAAA+TGG 0.460162 4.1:+22400664 MS.gene26606:CDS
TATTGAGAGGCTCAAGGATC+GGG 0.463811 4.1:+22398332 MS.gene26606:CDS
TACTGGTCTTGAAGATTACA+AGG 0.470857 4.1:+22400533 MS.gene26606:CDS
ATTTGCAGAGAGCAAGGACT+TGG 0.474512 4.1:+22400605 MS.gene26606:CDS
AGACATTACATCATCCCAAA+TGG 0.489838 4.1:-22398373 None:intergenic
TCCTTGAACTCAAATTCACT+TGG 0.494816 4.1:-22400759 None:intergenic
GGGGTTCGCTTGGATTCTGC+AGG 0.497969 4.1:+22398247 MS.gene26606:CDS
TTGCGGTTGATGGAATTTCT+GGG 0.509138 4.1:-22398202 None:intergenic
TTTCAGTATCACATAGGTAG+AGG 0.509550 4.1:+22398688 MS.gene26606:intron
CACAGAATTTGCAGAGAGCA+AGG 0.512541 4.1:+22400599 MS.gene26606:CDS
AGAAAATTGCAGGGGAGTTG+CGG 0.514104 4.1:-22398219 None:intergenic
TAAAATGATACAGTATAGTA+GGG 0.515987 4.1:-22400576 None:intergenic
TCCAATGGCTTGAGTTGCAA+AGG 0.530974 4.1:-22398297 None:intergenic
AGAAACTGTTGTGAAAGAAT+GGG 0.537123 4.1:-22398166 None:intergenic
CTCGGAGGCGAAATGGCTTG+TGG 0.552401 4.1:+22400671 MS.gene26606:CDS
AGGACTTGGTACTGATCCGT+GGG 0.562824 4.1:+22400619 MS.gene26606:CDS
TTTGTCATTCCTTTGTGGAG+GGG 0.566411 4.1:+22398863 MS.gene26606:CDS
ATATTGAGAGGCTCAAGGAT+CGG 0.568445 4.1:+22398331 MS.gene26606:CDS
CCCCATTTCAGAAAATTGCA+GGG 0.572888 4.1:-22398228 None:intergenic
AGGACGTCAAGATTCGCTAC+TGG 0.579599 4.1:+22398267 MS.gene26606:CDS
TACCAGCAAGCTGACTGACT+CGG 0.584954 4.1:+22400653 MS.gene26606:CDS
CGTAGATATTGAGAGGCTCA+AGG 0.587957 4.1:+22398326 MS.gene26606:CDS
TGGAGCATAGAGCTAAAGAA+TGG 0.597620 4.1:+22398752 MS.gene26606:CDS
ATTCTATCGTAGATATTGAG+AGG 0.607771 4.1:+22398319 MS.gene26606:CDS
AAGGACTTGGTACTGATCCG+TGG 0.611446 4.1:+22400618 MS.gene26606:CDS
TAGGCATGTTCAATGCTCGC+AGG 0.614925 4.1:-22400785 None:intergenic
CTTGAAGATTACAAGGCTAG+AGG 0.618380 4.1:+22400540 MS.gene26606:CDS
ATATCTACGATAGAATCCAA+TGG 0.618401 4.1:-22398312 None:intergenic
GAATTTCTGGGAAGTTGCTG+CGG 0.624275 4.1:-22398190 None:intergenic
TATGGTTCTCCAAATTCTGG+AGG 0.630186 4.1:-22398097 None:intergenic
CCCATTTCAGAAAATTGCAG+GGG 0.636308 4.1:-22398227 None:intergenic
TAACCACTTCCCCTCCACAA+AGG 0.668270 4.1:-22398872 None:intergenic
CAGCAAGCTGACTGACTCGG+AGG 0.679284 4.1:+22400656 MS.gene26606:CDS
GTTGTGAAAGAATGGGCATG+AGG 0.724603 4.1:-22398159 None:intergenic
TGGTAAATACAACATCCCCA+CGG 0.737738 4.1:-22400635 None:intergenic
GGACTTGGTACTGATCCGTG+GGG 0.769538 4.1:+22400620 MS.gene26606:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGGAAAGTAAAAAAAA+AGG + chr4.1:22399161-22399180 MS.gene26606:intron 15.0%
!! ACAACTTAAAACAAAAAAAT+TGG - chr4.1:22400105-22400124 None:intergenic 15.0%
!! TAATTATATCTTGAAACAAT+TGG + chr4.1:22400276-22400295 MS.gene26606:intron 15.0%
!!! CTTAGTTTTTAACATTTTTA+TGG + chr4.1:22400221-22400240 MS.gene26606:intron 15.0%
!!! TAAATTTGAAGTAAAAATGT+TGG + chr4.1:22399747-22399766 MS.gene26606:intron 15.0%
!! AAAATGTTAAAAACTAAGCA+TGG - chr4.1:22400219-22400238 None:intergenic 20.0%
!! ATATTCCAAAATGATCTTAT+GGG + chr4.1:22399539-22399558 MS.gene26606:intron 20.0%
!! TAAAACAAAAAAATTGGTAC+TGG - chr4.1:22400099-22400118 None:intergenic 20.0%
!! TAAAATGATACAGTATAGTA+GGG - chr4.1:22400579-22400598 None:intergenic 20.0%
!! TATATAACAATGTTTGTTCA+AGG + chr4.1:22398893-22398912 MS.gene26606:CDS 20.0%
!! TATTGTTTACAAATGTTGAT+AGG + chr4.1:22398450-22398469 MS.gene26606:intron 20.0%
!! TGGATTAAAATATTTCAATC+AGG + chr4.1:22399767-22399786 MS.gene26606:intron 20.0%
!! TTGTATCTGTAAGAATATTA+GGG - chr4.1:22399434-22399453 None:intergenic 20.0%
!!! AATTTTTATTGGCAACTATA+GGG + chr4.1:22400066-22400085 MS.gene26606:intron 20.0%
!!! ATATTTTACATAACCTATCA+TGG - chr4.1:22398510-22398529 None:intergenic 20.0%
!!! ATTTAACTTTAACAAAGAAG+GGG + chr4.1:22399667-22399686 MS.gene26606:intron 20.0%
!!! CATTTAACTTTAACAAAGAA+GGG + chr4.1:22399666-22399685 MS.gene26606:intron 20.0%
!!! GTTTTAAAATTCTCATTTCT+GGG - chr4.1:22399922-22399941 None:intergenic 20.0%
!!! TCATTTAACTTTAACAAAGA+AGG + chr4.1:22399665-22399684 MS.gene26606:intron 20.0%
!!! TGTTTTAAAATTCTCATTTC+TGG - chr4.1:22399923-22399942 None:intergenic 20.0%
!!! TTGTTGTTAACTATATAACT+TGG + chr4.1:22398657-22398676 MS.gene26606:intron 20.0%
! AAAATAAAAATCACTGTAGC+AGG + chr4.1:22399993-22400012 MS.gene26606:intron 25.0%
! AAACTTTAACTGATAATAGC+CGG - chr4.1:22399850-22399869 None:intergenic 25.0%
! AAGGAAATTGTTTATGTTGT+AGG + chr4.1:22399190-22399209 MS.gene26606:intron 25.0%
! AAGTACTTCACAAAGTTTAT+TGG - chr4.1:22399328-22399347 None:intergenic 25.0%
! AATTTATTTGAGTCCATGAT+AGG + chr4.1:22398494-22398513 MS.gene26606:intron 25.0%
! ACAAAGGAATGACAAAATAT+CGG - chr4.1:22398859-22398878 None:intergenic 25.0%
! ACATAAACAATTTCCTTGAA+TGG - chr4.1:22399187-22399206 None:intergenic 25.0%
! ACCCATATTTAAATGGAAAA+AGG - chr4.1:22399030-22399049 None:intergenic 25.0%
! AGAAATTGAAAAGTTGAAGT+GGG + chr4.1:22399133-22399152 MS.gene26606:intron 25.0%
! AGGAAATTGTTTATGTTGTA+GGG + chr4.1:22399191-22399210 MS.gene26606:intron 25.0%
! AGTATTGTTAGTATTATGCT+AGG + chr4.1:22399063-22399082 MS.gene26606:intron 25.0%
! ATACAATTACCAAAGAGAAA+AGG - chr4.1:22398433-22398452 None:intergenic 25.0%
! ATACTAACAATACTAACATC+TGG - chr4.1:22399057-22399076 None:intergenic 25.0%
! ATTTGAATAAATGACAAGAG+AGG - chr4.1:22398934-22398953 None:intergenic 25.0%
! CATATTCCAAAATGATCTTA+TGG + chr4.1:22399538-22399557 MS.gene26606:intron 25.0%
! CCCATATTTAAATGGAAAAA+GGG - chr4.1:22399029-22399048 None:intergenic 25.0%
! CTATAGTTGCCAATAAAAAT+TGG - chr4.1:22400067-22400086 None:intergenic 25.0%
! CTTGTATCTGTAAGAATATT+AGG - chr4.1:22399435-22399454 None:intergenic 25.0%
! GTAAAATGATACAGTATAGT+AGG - chr4.1:22400580-22400599 None:intergenic 25.0%
! GTATTGTTAGTATTATGCTA+GGG + chr4.1:22399064-22399083 MS.gene26606:intron 25.0%
! TATCTTGAAACAATTGGAAA+TGG + chr4.1:22400282-22400301 MS.gene26606:intron 25.0%
! TATTCCAAAATGATCTTATG+GGG + chr4.1:22399540-22399559 MS.gene26606:intron 25.0%
! TATTGTTAGTATTATGCTAG+GGG + chr4.1:22399065-22399084 MS.gene26606:intron 25.0%
! TCCAAAAAATATGTACCATT+AGG - chr4.1:22400137-22400156 None:intergenic 25.0%
! TGAAAATATCACTTCCATTT+GGG + chr4.1:22398359-22398378 MS.gene26606:CDS 25.0%
! TTATATCATATTGAGATCCA+CGG + chr4.1:22399581-22399600 MS.gene26606:intron 25.0%
! TTTGAATAAATGACAAGAGA+GGG - chr4.1:22398933-22398952 None:intergenic 25.0%
!! ACCCTTTTTCCATTTAAATA+TGG + chr4.1:22399025-22399044 MS.gene26606:intron 25.0%
!! AGTTGTTTCATATTTCCTAA+TGG + chr4.1:22400119-22400138 MS.gene26606:intron 25.0%
!! CAATTTTTATTGGCAACTAT+AGG + chr4.1:22400065-22400084 MS.gene26606:intron 25.0%
!! CCCTTTTTCCATTTAAATAT+GGG + chr4.1:22399026-22399045 MS.gene26606:intron 25.0%
!! CTACAAGTTATTTAACTTCA+AGG - chr4.1:22399824-22399843 None:intergenic 25.0%
!! TTCTTTATTCCTTTTCTCTT+TGG + chr4.1:22398421-22398440 MS.gene26606:intron 25.0%
!! TTTTAAACCTGCTATCATAT+TGG - chr4.1:22400252-22400271 None:intergenic 25.0%
!!! CTTTTTATTTGAATGATGTG+AGG + chr4.1:22400706-22400725 MS.gene26606:CDS 25.0%
!!! GTTTTTTTTCAGTATCACAT+AGG + chr4.1:22398682-22398701 MS.gene26606:intron 25.0%
!!! TCAAATTTTAGTTTTCCTTC+AGG + chr4.1:22399465-22399484 MS.gene26606:intron 25.0%
!!! TCCTAATGGTACATATTTTT+TGG + chr4.1:22400133-22400152 MS.gene26606:intron 25.0%
AAACTGTTCAAACTTCAAAG+TGG + chr4.1:22399876-22399895 MS.gene26606:intron 30.0%
ACAAAGTTTATTGGTAGACA+CGG - chr4.1:22399319-22399338 None:intergenic 30.0%
AGAAACTGTTGTGAAAGAAT+GGG - chr4.1:22398169-22398188 None:intergenic 30.0%
ATATCTACGATAGAATCCAA+TGG - chr4.1:22398315-22398334 None:intergenic 30.0%
ATATTTCAATCAGGAACACA+AGG + chr4.1:22399776-22399795 MS.gene26606:intron 30.0%
ATTCTATCGTAGATATTGAG+AGG + chr4.1:22398319-22398338 MS.gene26606:CDS 30.0%
CTGAAAATATCACTTCCATT+TGG + chr4.1:22398358-22398377 MS.gene26606:CDS 30.0%
GAGAAATTGAAAAGTTGAAG+TGG + chr4.1:22399132-22399151 MS.gene26606:intron 30.0%
GTAAAAAAAAAGGCCATTCA+AGG + chr4.1:22399171-22399190 MS.gene26606:intron 30.0%
GTTATCTTCAATGTGACTAT+GGG + chr4.1:22400034-22400053 MS.gene26606:intron 30.0%
TAAAACATCAACAAGCCTAA+AGG + chr4.1:22399936-22399955 MS.gene26606:intron 30.0%
TTCTATATATCTGATCCTGA+AGG - chr4.1:22399483-22399502 None:intergenic 30.0%
! CAAATGGAAGTGATATTTTC+AGG - chr4.1:22398360-22398379 None:intergenic 30.0%
! GATATTTTGTCATTCCTTTG+TGG + chr4.1:22398858-22398877 MS.gene26606:CDS 30.0%
! GTTAAATAACTTGTAGAGTC+CGG + chr4.1:22399828-22399847 MS.gene26606:intron 30.0%
! TGATAGGTAAAAAAGGCTTT+TGG - chr4.1:22400351-22400370 None:intergenic 30.0%
!! CGAGTTTTGATAGGTAAAAA+AGG - chr4.1:22400358-22400377 None:intergenic 30.0%
!!! GAAGATTGAGATGTTTTTTC+TGG - chr4.1:22398133-22398152 None:intergenic 30.0%
AAAAATCTCAAGACATTCCG+TGG - chr4.1:22399601-22399620 None:intergenic 35.0%
AAAGTGGCCAATGTCAAAAA+TGG + chr4.1:22399892-22399911 MS.gene26606:intron 35.0%
AATTGAAAAGTTGAAGTGGG+TGG + chr4.1:22399136-22399155 MS.gene26606:intron 35.0%
AGACATTACATCATCCCAAA+TGG - chr4.1:22398376-22398395 None:intergenic 35.0%
AGTCACATTGAAGATAACCA+AGG - chr4.1:22400032-22400051 None:intergenic 35.0%
AGTTGCCAATAAAAATTGGC+AGG - chr4.1:22400063-22400082 None:intergenic 35.0%
ATTGAAAAGTTGAAGTGGGT+GGG + chr4.1:22399137-22399156 MS.gene26606:intron 35.0%
CAAAGTTTATTGGTAGACAC+GGG - chr4.1:22399318-22399337 None:intergenic 35.0%
CAGAAACTGTTGTGAAAGAA+TGG - chr4.1:22398170-22398189 None:intergenic 35.0%
CAGGATCAGATATATAGAAC+TGG + chr4.1:22399484-22399503 MS.gene26606:intron 35.0%
GGTTATCTTCAATGTGACTA+TGG + chr4.1:22400033-22400052 MS.gene26606:intron 35.0%
GGTTTACATCTCAACTATCA+AGG - chr4.1:22400330-22400349 None:intergenic 35.0%
GTTACATGGAAAAGAGAAAG+CGG + chr4.1:22399213-22399232 MS.gene26606:intron 35.0%
GTTTATGTTGTAGGGTTACA+TGG + chr4.1:22399199-22399218 MS.gene26606:intron 35.0%
TATACTACCCATATCCAAGA+AGG - chr4.1:22399109-22399128 None:intergenic 35.0%
TATCTTCAACCTCCAGAATT+TGG + chr4.1:22398088-22398107 MS.gene26606:CDS 35.0%
TCCTTGAACTCAAATTCACT+TGG - chr4.1:22400762-22400781 None:intergenic 35.0%
TGGCGTTACCCATATTTAAA+TGG - chr4.1:22399037-22399056 None:intergenic 35.0%
TTACATGGAAAAGAGAAAGC+GGG + chr4.1:22399214-22399233 MS.gene26606:intron 35.0%
TTTCAGTATCACATAGGTAG+AGG + chr4.1:22398688-22398707 MS.gene26606:intron 35.0%
! ATTTTGTCATTCCTTTGTGG+AGG + chr4.1:22398861-22398880 MS.gene26606:CDS 35.0%
! GGTGTTGTATGCTAAATAGA+TGG - chr4.1:22399413-22399432 None:intergenic 35.0%
! GGTTTCCTGCCAATTTTTAT+TGG + chr4.1:22400055-22400074 MS.gene26606:intron 35.0%
! GTTGATTGTCTATGTTTTGC+TGG + chr4.1:22398606-22398625 MS.gene26606:intron 35.0%
! TCCAAGTGAATTTGAGTTCA+AGG + chr4.1:22400758-22400777 MS.gene26606:CDS 35.0%
! TTTAACTTCAAGGATAGTGC+AGG - chr4.1:22399814-22399833 None:intergenic 35.0%
! TTTTGTCATTCCTTTGTGGA+GGG + chr4.1:22398862-22398881 MS.gene26606:CDS 35.0%
!! ATAGGAGTCTATGACTTGTT+TGG + chr4.1:22398468-22398487 MS.gene26606:intron 35.0%
!! TACTGGTCTTGAAGATTACA+AGG + chr4.1:22400533-22400552 MS.gene26606:CDS 35.0%
!! TGCTTTGTTCGAGTTTTGAT+AGG - chr4.1:22400367-22400386 None:intergenic 35.0%
!!! TGAGATGTTTTTTCTGGCAT+TGG - chr4.1:22398127-22398146 None:intergenic 35.0%
ACAAATACAGACCAGCAATC+AGG - chr4.1:22398996-22399015 None:intergenic 40.0%
ACACTCAACCTTCTTGGATA+TGG + chr4.1:22399098-22399117 MS.gene26606:intron 40.0%
ACCCCATTTCAGAAAATTGC+AGG - chr4.1:22398232-22398251 None:intergenic 40.0%
AGCAAGTCTTTATCACTTGC+TGG + chr4.1:22398732-22398751 MS.gene26606:CDS 40.0%
ATATTGAGAGGCTCAAGGAT+CGG + chr4.1:22398331-22398350 MS.gene26606:CDS 40.0%
ATCGAACAGATCATGACTGA+TGG + chr4.1:22399711-22399730 MS.gene26606:intron 40.0%
CACATAGGTAGAGGTCATAT+TGG + chr4.1:22398697-22398716 MS.gene26606:CDS 40.0%
CACTCAACCTTCTTGGATAT+GGG + chr4.1:22399099-22399118 MS.gene26606:intron 40.0%
CAGGAAAAAAGTTGCTTCCT+TGG + chr4.1:22400012-22400031 MS.gene26606:intron 40.0%
CCCATTTCAGAAAATTGCAG+GGG - chr4.1:22398230-22398249 None:intergenic 40.0%
CCCCATTTCAGAAAATTGCA+GGG - chr4.1:22398231-22398250 None:intergenic 40.0%
CTTGAAGATTACAAGGCTAG+AGG + chr4.1:22400540-22400559 MS.gene26606:CDS 40.0%
GACTTCTATCGAACACCTTT+AGG - chr4.1:22399954-22399973 None:intergenic 40.0%
GATCAAACACTCAACCTTCT+TGG + chr4.1:22399092-22399111 MS.gene26606:intron 40.0%
GGAACTTCCAATATGATAGC+AGG + chr4.1:22400242-22400261 MS.gene26606:intron 40.0%
GGATAGTGCAGGATTTCTAT+TGG - chr4.1:22399803-22399822 None:intergenic 40.0%
GGCTGCAAAAGAATAAGCAA+AGG - chr4.1:22398838-22398857 None:intergenic 40.0%
GTTAGTATTATGCTAGGGGT+GGG + chr4.1:22399069-22399088 MS.gene26606:intron 40.0%
TATGGTTCTCCAAATTCTGG+AGG - chr4.1:22398100-22398119 None:intergenic 40.0%
TCATGATCTGTTCGATTGCA+AGG - chr4.1:22399707-22399726 None:intergenic 40.0%
TGCTATGGTTCTCCAAATTC+TGG - chr4.1:22398103-22398122 None:intergenic 40.0%
TGGAGCATAGAGCTAAAGAA+TGG + chr4.1:22398752-22398771 MS.gene26606:CDS 40.0%
TGGTAAATACAACATCCCCA+CGG - chr4.1:22400638-22400657 None:intergenic 40.0%
TGTTAGTATTATGCTAGGGG+TGG + chr4.1:22399068-22399087 MS.gene26606:intron 40.0%
TGTTGCGAGTGTGATAAGAT+TGG - chr4.1:22399367-22399386 None:intergenic 40.0%
TTAGTATTATGCTAGGGGTG+GGG + chr4.1:22399070-22399089 MS.gene26606:intron 40.0%
TTGGTAGACACGGGAAAATA+AGG - chr4.1:22399309-22399328 None:intergenic 40.0%
TTTGTCATTCCTTTGTGGAG+GGG + chr4.1:22398863-22398882 MS.gene26606:CDS 40.0%
! AGACCAGTAAAAAGCATGTG+CGG - chr4.1:22400522-22400541 None:intergenic 40.0%
! CGATCCCCATAAGATCATTT+TGG - chr4.1:22399547-22399566 None:intergenic 40.0%
!! GGGCAAACCATTTTTGACAT+TGG - chr4.1:22399902-22399921 None:intergenic 40.0%
!! TCCCCTGCAATTTTCTGAAA+TGG + chr4.1:22398226-22398245 MS.gene26606:CDS 40.0%
!! TTGCGGTTGATGGAATTTCT+GGG - chr4.1:22398205-22398224 None:intergenic 40.0%
!! TTTTCTGGCATTGGATGCTA+TGG - chr4.1:22398118-22398137 None:intergenic 40.0%
!!! CCCCTGCAATTTTCTGAAAT+GGG + chr4.1:22398227-22398246 MS.gene26606:CDS 40.0%
!!! CCCTGCAATTTTCTGAAATG+GGG + chr4.1:22398228-22398247 MS.gene26606:CDS 40.0%
AACTGTTTGCACCTGATTGC+TGG + chr4.1:22398982-22399001 MS.gene26606:intron 45.0%
AGAAAATTGCAGGGGAGTTG+CGG - chr4.1:22398222-22398241 None:intergenic 45.0%
ATTTGCAGAGAGCAAGGACT+TGG + chr4.1:22400605-22400624 MS.gene26606:CDS 45.0%
CACAGAATTTGCAGAGAGCA+AGG + chr4.1:22400599-22400618 MS.gene26606:CDS 45.0%
CGTAGATATTGAGAGGCTCA+AGG + chr4.1:22398326-22398345 MS.gene26606:CDS 45.0%
CTTTAACAAAGAAGGGGTCG+TGG + chr4.1:22399673-22399692 MS.gene26606:intron 45.0%
GTTGAAGTGGGTGGGAAAAA+AGG + chr4.1:22399145-22399164 MS.gene26606:intron 45.0%
GTTGTGAAAGAATGGGCATG+AGG - chr4.1:22398162-22398181 None:intergenic 45.0%
TATTGAGAGGCTCAAGGATC+GGG + chr4.1:22398332-22398351 MS.gene26606:CDS 45.0%
TCCTTTGCAACTCAAGCCAT+TGG + chr4.1:22398296-22398315 MS.gene26606:CDS 45.0%
! GAATTTCTGGGAAGTTGCTG+CGG - chr4.1:22398193-22398212 None:intergenic 45.0%
! TCCAATGGCTTGAGTTGCAA+AGG - chr4.1:22398300-22398319 None:intergenic 45.0%
!! GTTGCGGTTGATGGAATTTC+TGG - chr4.1:22398206-22398225 None:intergenic 45.0%
!! TTTCTGAAATGGGGTTCGCT+TGG + chr4.1:22398237-22398256 MS.gene26606:CDS 45.0%
!! AATATATATTAATTAACAAA+TGG + chr4.1:22400402-22400421 MS.gene26606:intron 5.0%
AGGACGTCAAGATTCGCTAC+TGG + chr4.1:22398267-22398286 MS.gene26606:CDS 50.0%
ATTCCTTTGTGGAGGGGAAG+TGG + chr4.1:22398869-22398888 MS.gene26606:CDS 50.0%
GATCTGTTCGATTGCAAGGC+AGG - chr4.1:22399703-22399722 None:intergenic 50.0%
TAACAAAGAAGGGGTCGTGG+TGG + chr4.1:22399676-22399695 MS.gene26606:intron 50.0%
TAACCACTTCCCCTCCACAA+AGG - chr4.1:22398875-22398894 None:intergenic 50.0%
TACCAGCAAGCTGACTGACT+CGG + chr4.1:22400653-22400672 MS.gene26606:CDS 50.0%
TAGGCATGTTCAATGCTCGC+AGG - chr4.1:22400788-22400807 None:intergenic 50.0%
!! AAGGACTTGGTACTGATCCG+TGG + chr4.1:22400618-22400637 MS.gene26606:CDS 50.0%
!! ACGCCGCACATGCTTTTTAC+TGG + chr4.1:22400516-22400535 MS.gene26606:CDS 50.0%
!! AGGACTTGGTACTGATCCGT+GGG + chr4.1:22400619-22400638 MS.gene26606:CDS 50.0%
!! GGACTTGGTACTGATCCGTG+GGG + chr4.1:22400620-22400639 MS.gene26606:CDS 55.0%
!! TGACTGACTCGGAGGCGAAA+TGG + chr4.1:22400664-22400683 MS.gene26606:CDS 55.0%
CTCCGAGTCAGTCAGCTTGC+TGG - chr4.1:22400658-22400677 None:intergenic 60.0%
CTCGGAGGCGAAATGGCTTG+TGG + chr4.1:22400671-22400690 MS.gene26606:CDS 60.0%
GGGGTTCGCTTGGATTCTGC+AGG + chr4.1:22398247-22398266 MS.gene26606:CDS 60.0%
TGCAGGGGAGTTGCGGTTGA+TGG - chr4.1:22398215-22398234 None:intergenic 60.0%
!! CAGCAAGCTGACTGACTCGG+AGG + chr4.1:22400656-22400675 MS.gene26606:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 22398078 22400815 22398078 ID=MS.gene26606
chr4.1 mRNA 22398078 22400815 22398078 ID=MS.gene26606.t1;Parent=MS.gene26606
chr4.1 exon 22398078 22398386 22398078 ID=MS.gene26606.t1.exon1;Parent=MS.gene26606.t1
chr4.1 CDS 22398078 22398386 22398078 ID=cds.MS.gene26606.t1;Parent=MS.gene26606.t1
chr4.1 exon 22398694 22398773 22398694 ID=MS.gene26606.t1.exon2;Parent=MS.gene26606.t1
chr4.1 CDS 22398694 22398773 22398694 ID=cds.MS.gene26606.t1;Parent=MS.gene26606.t1
chr4.1 exon 22398856 22398914 22398856 ID=MS.gene26606.t1.exon3;Parent=MS.gene26606.t1
chr4.1 CDS 22398856 22398914 22398856 ID=cds.MS.gene26606.t1;Parent=MS.gene26606.t1
chr4.1 exon 22400511 22400815 22400511 ID=MS.gene26606.t1.exon4;Parent=MS.gene26606.t1
chr4.1 CDS 22400511 22400815 22400511 ID=cds.MS.gene26606.t1;Parent=MS.gene26606.t1
Gene Sequence

>MS.gene26606

ATGCAAAGAGTATCTTCAACCTCCAGAATTTGGAGAACCATAGCATCCAATGCCAGAAAAAACATCTCAATCTTCAACGAACCTCATGCCCATTCTTTCACAACAGTTTCTGCCGCAGCAACTTCCCAGAAATTCCATCAACCGCAACTCCCCTGCAATTTTCTGAAATGGGGTTCGCTTGGATTCTGCAGGACGTCAAGATTCGCTACTGGCTTCAATCCTTTGCAACTCAAGCCATTGGATTCTATCGTAGATATTGAGAGGCTCAAGGATCGGGATCCTGAAAATATCACTTCCATTTGGGATGATGTAATGTCTTATTTCTCGTAATTTCAATCATTTGTTCTTTATTCCTTTTCTCTTTGGTAATTGTATTGTTTACAAATGTTGATAGGAGTCTATGACTTGTTTGGATTAATTTATTTGAGTCCATGATAGGTTATGTAAAATATTTATAGTTTATATGAAAGTAGCTTATAGCTTTTGTTGTAGAAATAACTTGTATGATTCATTTACATAACTGACTCAGTTGATTGTCTATGTTTTGCTGGAATATTGATGTGATTTATGATAATTTCTTTGTTGTTAACTATATAACTTGGCTGTTTTTTTTCAGTATCACATAGGTAGAGGTCATATTGGAGCAACTATGAAAGCAAGTCTTTATCACTTGCTGGAGCATAGAGCTAAAGAATGGTATTCATTTTAATCAATACTTGTTCTGTGAATTTGCGAGCTTCTAGATTTCACATTCTTACCTTTGCTTATTCTTTTGCAGCCGATATTTTGTCATTCCTTTGTGGAGGGGAAGTGGTTATATAACAATGTTTGTTCAAGGTTTGATTAAAGTTACCCTCTCTTGTCATTTATTCAAATGAGTTCAATAGCTGTTAATGTGAATGAAAACTGTTTGCACCTGATTGCTGGTCTGTATTTGTAAAATAGAAACCCTTTTTCCATTTAAATATGGGTAACGCCAGATGTTAGTATTGTTAGTATTATGCTAGGGGTGGGGATCAAACACTCAACCTTCTTGGATATGGGTAGTATATGAGAGAAATTGAAAAGTTGAAGTGGGTGGGAAAAAAGGAAAGTAAAAAAAAAGGCCATTCAAGGAAATTGTTTATGTTGTAGGGTTACATGGAAAAGAGAAAGCGGGATAGAGATGAAGCACATATATTAGTATAATTTAAAAGAGACTCTGAATCGTTGTGATACTTTGCATTGACCTTATTTTCCCGTGTCTACCAATAAACTTTGTGAAGTACTTGTTCAACTATACGAGTCCAATCTTATCACACTCGCAACATACAGAGAGAATATAGCTTAGCTCCATCTATTTAGCATACAACACCCTAATATTCTTACAGATACAAGAATTTGAGCTTCAAATTTTAGTTTTCCTTCAGGATCAGATATATAGAACTGGATGCTTGATGAAACATTTGACAAACATGAAGCATATTCCAAAATGATCTTATGGGGATCGATCAGTTGTTGAAATTATATCATATTGAGATCCACGGAATGTCTTGAGATTTTTATTTAGAAAAATGCACTTTAAAAATATATCAGTATGTGATTTTCTCATTTAACTTTAACAAAGAAGGGGTCGTGGTGGTCCTGCCTTGCAATCGAACAGATCATGACTGATGGACAACAGAAGATCTAAATTTGAAGTAAAAATGTTGGATTAAAATATTTCAATCAGGAACACAAGGACCAATAGAAATCCTGCACTATCCTTGAAGTTAAATAACTTGTAGAGTCCGGCTATTATCAGTTAAAGTTTTGAAATAAACTGTTCAAACTTCAAAGTGGCCAATGTCAAAAATGGTTTGCCCAGAAATGAGAATTTTAAAACATCAACAAGCCTAAAGGTGTTCGATAGAAGTCTCATGTTTTGTTTAGAAAGAAAATAAAAATCACTGTAGCAGGAAAAAAGTTGCTTCCTTGGTTATCTTCAATGTGACTATGGGTTTCCTGCCAATTTTTATTGGCAACTATAGGGTCAAAAACCAGTACCAATTTTTTTGTTTTAAGTTGTTTCATATTTCCTAATGGTACATATTTTTTGGATAATTAAACAACTGTCAACAGCAAAATGATTATATCTATGTGTTGTGTAATTTTTTAGACCATGCTTAGTTTTTAACATTTTTATGGAACTTCCAATATGATAGCAGGTTTAAAAAATTTAATTATATCTTGAAACAATTGGAAATGGTTTAAATATAAGTGATAGATCTCCTTGATAGTTGAGATGTAAACCAAAAGCCTTTTTTACCTATCAAAACTCGAACAAAGCATGTTGAAACAAATATAATATATATTAATTAACAAATGGATATTTTTATTCTGAGTATTTGTGTATGTTAATCTTCTTTACACTTCAATTGATGTCTCACATACATGAGCATTCTTTTCTTGCAGTTCAGACGCCGCACATGCTTTTTACTGGTCTTGAAGATTACAAGGCTAGAGGAACACAAGCATCTCCCTACTATACTGTATCATTTTACACAGAATTTGCAGAGAGCAAGGACTTGGTACTGATCCGTGGGGATGTTGTATTTACCAGCAAGCTGACTGACTCGGAGGCGAAATGGCTTGTGGAAACTGCTCAGTCTTTTTATTTGAATGATGTGAGGTACAAACTAGTCGAGAGATTCAATAAAGATCCAAGTGAATTTGAGTTCAAGGATGTCCTGCGAGCATTGAACATGCCTATTTTGTAA
Protein sequence

>MS.gene26606.t1

MQRVSSTSRIWRTIASNARKNISIFNEPHAHSFTTVSAAATSQKFHQPQLPCNFLKWGSLGFCRTSRFATGFNPLQLKPLDSIVDIERLKDRDPENITSIWDDYHIGRGHIGATMKASLYHLLEHRAKECRYFVIPLWRGSGYITMFVQVQTPHMLFTGLEDYKARGTQASPYYTVSFYTEFAESKDLVLIRGDVVFTSKLTDSEAKWLVETAQSFYLNDVRYKLVERFNKDPSEFEFKDVLRALNMPIL