Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26652.t1 | XP_003624893.1 | 97.9 | 912 | 9 | 1 | 1 | 902 | 1 | 912 | 0.00E+00 | 1793.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26652.t1 | O22207 | 67.2 | 925 | 258 | 8 | 1 | 890 | 1 | 915 | 0.0e+00 | 1203.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26652.t1 | G7L4U7 | 97.9 | 912 | 9 | 1 | 1 | 902 | 1 | 912 | 0.0e+00 | 1793.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene07512 | MS.gene26652 | PPI |
MS.gene062155 | MS.gene26652 | PPI |
MS.gene07513 | MS.gene26652 | PPI |
MS.gene26652 | MS.gene004975 | PPI |
MS.gene86827 | MS.gene26652 | PPI |
MS.gene004975 | MS.gene26652 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26652.t1 | MTR_7g088760 | 97.917 | 912 | 9 | 1 | 1 | 902 | 1 | 912 | 0.0 | 1852 |
MS.gene26652.t1 | MTR_7g088760 | 96.125 | 929 | 9 | 2 | 1 | 902 | 1 | 929 | 0.0 | 1844 |
MS.gene26652.t1 | MTR_1g077980 | 49.724 | 907 | 419 | 12 | 14 | 894 | 19 | 914 | 0.0 | 877 |
MS.gene26652.t1 | MTR_2g087710 | 44.671 | 882 | 411 | 22 | 41 | 891 | 27 | 862 | 0.0 | 681 |
MS.gene26652.t1 | MTR_7g106570 | 42.464 | 836 | 428 | 13 | 99 | 902 | 85 | 899 | 0.0 | 628 |
MS.gene26652.t1 | MTR_1g014260 | 31.288 | 163 | 91 | 5 | 744 | 888 | 363 | 522 | 2.67e-19 | 93.6 |
MS.gene26652.t1 | MTR_1g014260 | 26.519 | 181 | 113 | 2 | 315 | 495 | 179 | 339 | 2.45e-12 | 71.2 |
MS.gene26652.t1 | MTR_4g115880 | 28.144 | 167 | 95 | 4 | 744 | 888 | 415 | 578 | 9.90e-19 | 91.7 |
MS.gene26652.t1 | MTR_8g090190 | 33.129 | 163 | 87 | 6 | 744 | 891 | 208 | 363 | 8.07e-17 | 84.0 |
MS.gene26652.t1 | MTR_3g083600 | 33.498 | 203 | 102 | 9 | 298 | 495 | 210 | 384 | 5.15e-16 | 83.6 |
MS.gene26652.t1 | MTR_3g083600 | 35.606 | 132 | 70 | 4 | 773 | 890 | 939 | 1069 | 1.28e-14 | 79.0 |
MS.gene26652.t1 | MTR_3g087140 | 33.129 | 163 | 87 | 5 | 744 | 891 | 208 | 363 | 8.88e-16 | 80.5 |
MS.gene26652.t1 | MTR_1g014680 | 29.717 | 212 | 140 | 6 | 683 | 891 | 282 | 487 | 9.27e-16 | 82.4 |
MS.gene26652.t1 | MTR_3g100480 | 32.450 | 151 | 94 | 5 | 744 | 891 | 744 | 889 | 1.84e-15 | 81.6 |
MS.gene26652.t1 | MTR_4g130940 | 35.099 | 151 | 92 | 6 | 744 | 892 | 251 | 397 | 2.61e-15 | 80.9 |
MS.gene26652.t1 | MTR_4g130940 | 29.048 | 210 | 112 | 8 | 294 | 495 | 66 | 246 | 6.64e-12 | 70.1 |
MS.gene26652.t1 | MTR_4g130940 | 35.099 | 151 | 92 | 6 | 744 | 892 | 251 | 397 | 3.91e-15 | 80.5 |
MS.gene26652.t1 | MTR_4g130940 | 29.048 | 210 | 112 | 8 | 294 | 495 | 66 | 246 | 7.88e-12 | 69.7 |
MS.gene26652.t1 | MTR_6g022310 | 31.788 | 151 | 96 | 5 | 744 | 893 | 284 | 428 | 6.23e-15 | 79.7 |
MS.gene26652.t1 | MTR_5g030360 | 33.333 | 153 | 95 | 6 | 744 | 893 | 304 | 452 | 1.05e-14 | 79.0 |
MS.gene26652.t1 | MTR_5g066000 | 33.333 | 162 | 97 | 6 | 734 | 891 | 692 | 846 | 1.27e-14 | 79.0 |
MS.gene26652.t1 | MTR_5g430360 | 33.333 | 153 | 95 | 6 | 744 | 893 | 136 | 284 | 1.40e-14 | 78.2 |
MS.gene26652.t1 | MTR_8g471100 | 32.432 | 148 | 93 | 5 | 749 | 893 | 366 | 509 | 9.52e-14 | 75.5 |
MS.gene26652.t1 | MTR_8g067060 | 32.432 | 148 | 93 | 5 | 749 | 893 | 357 | 500 | 1.02e-13 | 75.5 |
MS.gene26652.t1 | MTR_2g070390 | 30.909 | 165 | 104 | 5 | 744 | 902 | 185 | 345 | 1.21e-13 | 75.5 |
MS.gene26652.t1 | MTR_3g100480 | 27.374 | 179 | 96 | 5 | 744 | 891 | 744 | 919 | 2.05e-13 | 75.1 |
MS.gene26652.t1 | MTR_6g022300 | 31.126 | 151 | 97 | 5 | 744 | 893 | 224 | 368 | 2.02e-12 | 71.2 |
MS.gene26652.t1 | MTR_6g022290 | 30.464 | 151 | 98 | 5 | 744 | 893 | 186 | 330 | 5.70e-12 | 69.7 |
MS.gene26652.t1 | MTR_2g060050 | 34.746 | 118 | 74 | 3 | 775 | 891 | 417 | 532 | 7.78e-12 | 69.3 |
MS.gene26652.t1 | MTR_5g032380 | 32.000 | 150 | 94 | 5 | 744 | 890 | 582 | 726 | 8.76e-12 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26652.t1 | AT2G40930 | 67.135 | 925 | 259 | 9 | 1 | 890 | 1 | 915 | 0.0 | 1244 |
MS.gene26652.t1 | AT2G40930 | 67.135 | 925 | 259 | 9 | 1 | 890 | 1 | 915 | 0.0 | 1244 |
MS.gene26652.t1 | AT4G10590 | 47.299 | 907 | 422 | 14 | 15 | 894 | 20 | 897 | 0.0 | 818 |
MS.gene26652.t1 | AT4G10590 | 47.299 | 907 | 422 | 14 | 15 | 894 | 20 | 897 | 0.0 | 818 |
MS.gene26652.t1 | AT4G10590 | 47.299 | 907 | 422 | 14 | 15 | 894 | 20 | 897 | 0.0 | 818 |
MS.gene26652.t1 | AT4G10590 | 47.299 | 907 | 422 | 14 | 15 | 894 | 20 | 897 | 0.0 | 818 |
MS.gene26652.t1 | AT4G10570 | 46.963 | 922 | 429 | 15 | 1 | 894 | 9 | 898 | 0.0 | 817 |
MS.gene26652.t1 | AT1G32850 | 45.934 | 910 | 434 | 15 | 9 | 896 | 12 | 885 | 0.0 | 775 |
MS.gene26652.t1 | AT5G22030 | 44.384 | 917 | 418 | 22 | 15 | 891 | 5 | 869 | 0.0 | 699 |
MS.gene26652.t1 | AT5G22030 | 42.693 | 958 | 417 | 26 | 15 | 891 | 5 | 911 | 0.0 | 670 |
MS.gene26652.t1 | AT5G46740 | 35.526 | 152 | 92 | 5 | 744 | 893 | 115 | 262 | 1.11e-18 | 90.9 |
MS.gene26652.t1 | AT5G46740 | 35.526 | 152 | 92 | 5 | 744 | 893 | 324 | 471 | 1.29e-18 | 91.7 |
MS.gene26652.t1 | AT5G10790 | 28.235 | 170 | 94 | 4 | 744 | 888 | 233 | 399 | 6.21e-18 | 87.8 |
MS.gene26652.t1 | AT5G10790 | 28.235 | 170 | 94 | 4 | 744 | 888 | 362 | 528 | 1.37e-17 | 87.8 |
MS.gene26652.t1 | AT4G17895 | 36.184 | 152 | 91 | 5 | 744 | 893 | 331 | 478 | 4.59e-17 | 86.7 |
MS.gene26652.t1 | AT4G31670 | 35.294 | 153 | 91 | 5 | 744 | 893 | 329 | 476 | 5.34e-17 | 86.3 |
MS.gene26652.t1 | AT2G32780 | 33.000 | 200 | 103 | 7 | 302 | 497 | 190 | 362 | 1.13e-16 | 85.9 |
MS.gene26652.t1 | AT2G32780 | 34.815 | 135 | 71 | 5 | 772 | 891 | 951 | 1083 | 1.26e-12 | 72.8 |
MS.gene26652.t1 | AT2G24640 | 32.716 | 162 | 101 | 5 | 734 | 892 | 155 | 311 | 1.13e-16 | 84.7 |
MS.gene26652.t1 | AT2G24640 | 32.716 | 162 | 101 | 5 | 734 | 892 | 325 | 481 | 1.98e-16 | 84.3 |
MS.gene26652.t1 | AT4G39910 | 33.129 | 163 | 88 | 6 | 744 | 891 | 211 | 367 | 5.03e-16 | 81.3 |
MS.gene26652.t1 | AT5G65450 | 34.667 | 150 | 91 | 4 | 744 | 890 | 506 | 651 | 9.21e-16 | 82.4 |
MS.gene26652.t1 | AT5G65450 | 34.667 | 150 | 91 | 4 | 744 | 890 | 487 | 632 | 1.10e-15 | 82.0 |
MS.gene26652.t1 | AT2G22310 | 32.727 | 165 | 90 | 6 | 744 | 893 | 174 | 332 | 1.54e-15 | 79.3 |
MS.gene26652.t1 | AT4G24560 | 34.932 | 146 | 86 | 5 | 749 | 891 | 708 | 847 | 1.57e-15 | 82.0 |
MS.gene26652.t1 | AT2G22310 | 32.727 | 165 | 90 | 6 | 744 | 893 | 169 | 327 | 1.86e-15 | 79.0 |
MS.gene26652.t1 | AT2G22310 | 32.727 | 165 | 90 | 6 | 744 | 893 | 206 | 364 | 2.39e-15 | 79.3 |
MS.gene26652.t1 | AT1G04860 | 31.868 | 182 | 88 | 4 | 318 | 493 | 232 | 383 | 3.70e-15 | 80.9 |
MS.gene26652.t1 | AT1G04860 | 36.154 | 130 | 72 | 5 | 772 | 891 | 829 | 957 | 8.49e-13 | 73.2 |
MS.gene26652.t1 | AT5G57990 | 34.109 | 129 | 79 | 5 | 763 | 890 | 286 | 409 | 1.23e-14 | 79.0 |
MS.gene26652.t1 | AT1G17110 | 34.000 | 150 | 91 | 5 | 744 | 890 | 599 | 743 | 2.20e-13 | 75.1 |
MS.gene26652.t1 | AT1G17110 | 34.000 | 150 | 91 | 5 | 744 | 890 | 599 | 743 | 2.20e-13 | 75.1 |
MS.gene26652.t1 | AT1G17110 | 34.000 | 150 | 91 | 5 | 744 | 890 | 603 | 747 | 2.25e-13 | 75.1 |
MS.gene26652.t1 | AT3G49600 | 32.168 | 143 | 92 | 4 | 744 | 883 | 253 | 393 | 1.63e-12 | 72.4 |
MS.gene26652.t1 | AT3G49600 | 32.168 | 143 | 92 | 4 | 744 | 883 | 253 | 393 | 1.93e-12 | 72.0 |
MS.gene26652.t1 | AT3G49600 | 32.168 | 143 | 92 | 4 | 744 | 883 | 253 | 393 | 1.93e-12 | 72.0 |
MS.gene26652.t1 | AT3G14400 | 30.872 | 149 | 96 | 5 | 744 | 890 | 191 | 334 | 2.72e-12 | 71.2 |
MS.gene26652.t1 | AT4G30890 | 34.454 | 119 | 73 | 4 | 775 | 891 | 436 | 551 | 6.42e-12 | 69.7 |
MS.gene26652.t1 | AT4G30890 | 34.454 | 119 | 73 | 4 | 775 | 891 | 436 | 551 | 6.42e-12 | 69.7 |
MS.gene26652.t1 | AT4G30890 | 34.454 | 119 | 73 | 4 | 775 | 891 | 436 | 551 | 6.42e-12 | 69.7 |
Find 189 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAGCAAGCTTTGCTTTAAA+AGG | 0.160460 | 7.2:+20114922 | None:intergenic |
AATCTCACCATTTAAATAAT+TGG | 0.212238 | 7.2:+20119269 | None:intergenic |
TGTCGTCTCTCTTTGCATTT+AGG | 0.212303 | 7.2:+20111309 | None:intergenic |
AGTGACTCGCATACCATTTC+AGG | 0.214221 | 7.2:-20113744 | MS.gene26652:CDS |
CAGAGTTCGCTAGGTACTTT+AGG | 0.226147 | 7.2:-20117921 | MS.gene26652:CDS |
TACAAATCATTATGGTAGTA+TGG | 0.231869 | 7.2:-20111094 | MS.gene26652:CDS |
TTTGGGACCAATTATTTAAA+TGG | 0.242961 | 7.2:-20119276 | MS.gene26652:intron |
ATAGTAGATCGAACATTTCT+TGG | 0.243280 | 7.2:+20119007 | None:intergenic |
ACAAGTTCTGCTCAAGAAAA+TGG | 0.250024 | 7.2:-20118219 | MS.gene26652:CDS |
GTACGAGCTTTCTTGGTTAC+AGG | 0.252237 | 7.2:+20113327 | None:intergenic |
GCGAGTTGCTTCGAAAACTA+TGG | 0.253234 | 7.2:-20114975 | MS.gene26652:CDS |
ATGGAGGCTCCCAGAGGTTT+TGG | 0.274551 | 7.2:-20111265 | MS.gene26652:CDS |
ACATTATACTGCACATATTA+AGG | 0.283483 | 7.2:-20111064 | MS.gene26652:intron |
TATGATTTGATTGATAATAC+TGG | 0.297467 | 7.2:-20119379 | MS.gene26652:CDS |
GCATCTCGAGACTTTATATA+TGG | 0.304889 | 7.2:+20114710 | None:intergenic |
CTGGCACACATCAACAATTA+TGG | 0.307663 | 7.2:+20114622 | None:intergenic |
GGCCCGTATTTCAAAACTTC+TGG | 0.322558 | 7.2:+20113348 | None:intergenic |
ATATGTTGTAGGTGCGCATT+TGG | 0.331177 | 7.2:-20118456 | MS.gene26652:intron |
TTACACGATTTAAGTCTTCA+TGG | 0.339764 | 7.2:+20114741 | None:intergenic |
AAGAAGTGGCTGATGAATAT+TGG | 0.344813 | 7.2:-20114670 | MS.gene26652:CDS |
AGAGATTCAGAAAACCCTTA+TGG | 0.344968 | 7.2:-20118051 | MS.gene26652:CDS |
TCTCTCTTTGTACACTTGTT+TGG | 0.347684 | 7.2:-20113298 | MS.gene26652:CDS |
AGGTTCAGTACGAGCTTTCT+TGG | 0.348296 | 7.2:+20113320 | None:intergenic |
ATTACTTCCTCGAGAGGTTT+GGG | 0.352900 | 7.2:-20119293 | MS.gene26652:CDS |
GAGGATCTTCAAAATATCTA+TGG | 0.357016 | 7.2:+20113880 | None:intergenic |
AAGAAGGGTTTGCCTGGTCT+TGG | 0.357294 | 7.2:+20119479 | None:intergenic |
GGTGTCAAATTCAATAAATA+AGG | 0.361104 | 7.2:-20113568 | MS.gene26652:CDS |
CTCATTGGGTTGCTAAATCT+TGG | 0.362899 | 7.2:-20117991 | MS.gene26652:CDS |
CTTTCCTGAACATAGCGATT+TGG | 0.367096 | 7.2:-20119443 | MS.gene26652:CDS |
TATGCCCTTACAAATCATTA+TGG | 0.372212 | 7.2:-20111102 | MS.gene26652:CDS |
GAGAGGAAAGTTATTAGTTC+AGG | 0.373182 | 7.2:-20119091 | MS.gene26652:CDS |
ATCATGATTCTCTCTTCATC+TGG | 0.373771 | 7.2:+20122427 | None:intergenic |
TGATTGGTCTCAGAAGCTTC+TGG | 0.374298 | 7.2:-20113403 | MS.gene26652:CDS |
TATTACTTCCTCGAGAGGTT+TGG | 0.375743 | 7.2:-20119294 | MS.gene26652:CDS |
CAAAATATCTATGGATCAAA+TGG | 0.375937 | 7.2:+20113889 | None:intergenic |
GGTTCATTCGGTGGTCTCAT+TGG | 0.397951 | 7.2:-20118006 | MS.gene26652:CDS |
TGTTAAATCAAAATCATGAA+TGG | 0.400502 | 7.2:+20111173 | None:intergenic |
TGAAATATTCGATCTTCTGT+TGG | 0.404083 | 7.2:-20118812 | MS.gene26652:CDS |
ATCTCTGCATCGTCCCTGCT+TGG | 0.407036 | 7.2:+20114078 | None:intergenic |
CTCTTCATCTGGACTCAGTT+CGG | 0.408233 | 7.2:+20122438 | None:intergenic |
TGCTTGCATTGATCTTTCAA+TGG | 0.415245 | 7.2:-20113481 | MS.gene26652:CDS |
GTTCATTCGGTGGTCTCATT+GGG | 0.416547 | 7.2:-20118005 | MS.gene26652:CDS |
CCTCTACTGCAAATTCTGTC+TGG | 0.416580 | 7.2:+20119062 | None:intergenic |
AGTCACTGTCATGGTCCTAT+TGG | 0.417495 | 7.2:+20114153 | None:intergenic |
GATGAGATCAATGAAACAAT+AGG | 0.418245 | 7.2:+20113702 | None:intergenic |
GAGATTCAGAAAACCCTTAT+GGG | 0.420378 | 7.2:-20118050 | MS.gene26652:CDS |
ACGATGACATTGTAAGCAAT+GGG | 0.430798 | 7.2:-20110830 | MS.gene26652:CDS |
TACTACCATAATGATTTGTA+AGG | 0.432111 | 7.2:+20111097 | None:intergenic |
AGAGTTCGCTAGGTACTTTA+GGG | 0.432261 | 7.2:-20117920 | MS.gene26652:CDS |
TCATCAGCCACTTCTTCATC+AGG | 0.432341 | 7.2:+20114677 | None:intergenic |
AAATGAATCACCAAAACCTC+TGG | 0.433698 | 7.2:+20111255 | None:intergenic |
ATATGGTTTCCATCCTGAAA+TGG | 0.433863 | 7.2:+20113731 | None:intergenic |
ACCGACATTACCTCTACTAT+TGG | 0.439461 | 7.2:-20113517 | MS.gene26652:CDS |
ACAGAGACTTTGTTGCAAAC+TGG | 0.440763 | 7.2:+20114223 | None:intergenic |
CATGCAGATGGTGGCAACAT+TGG | 0.441756 | 7.2:-20119516 | MS.gene26652:intron |
TCTCTGCATCGTCCCTGCTT+GGG | 0.443597 | 7.2:+20114079 | None:intergenic |
GGTGAACTAGCCCTAGCATT+TGG | 0.444967 | 7.2:-20114997 | MS.gene26652:CDS |
GTGCGCATTTGGGATTACTA+TGG | 0.445320 | 7.2:-20118445 | MS.gene26652:CDS |
TGGTCCTATTGGTGGTGGAC+TGG | 0.445511 | 7.2:+20114164 | None:intergenic |
CTCTTAGCATTTCTGCTGGA+TGG | 0.448019 | 7.2:-20114767 | MS.gene26652:CDS |
GCTTGCATTGATCTTTCAAT+GGG | 0.450900 | 7.2:-20113480 | MS.gene26652:CDS |
GAAACAATAGGTGTTCCATA+TGG | 0.452455 | 7.2:+20113714 | None:intergenic |
TTAAAAGGGCGAGGAGCAAT+TGG | 0.458894 | 7.2:+20114937 | None:intergenic |
GTTAAATCAAAATCATGAAT+GGG | 0.460871 | 7.2:+20111174 | None:intergenic |
CTTCGAAAACTATGGGCACC+TGG | 0.461703 | 7.2:-20114967 | MS.gene26652:CDS |
CATTGATCTTTCAATGGGAG+AGG | 0.465752 | 7.2:-20113475 | MS.gene26652:CDS |
AGAAGTGGCTGATGAATATT+GGG | 0.466501 | 7.2:-20114669 | MS.gene26652:CDS |
GAAAACCCTTATGGGACTCT+TGG | 0.471150 | 7.2:-20118042 | MS.gene26652:CDS |
CTCTCCAGTCCACCACCAAT+AGG | 0.473641 | 7.2:-20114168 | MS.gene26652:CDS |
GAGTTCTAGTGTATATTGAT+TGG | 0.475248 | 7.2:-20113419 | MS.gene26652:CDS |
CGCTTACAAGATTACAAAGA+TGG | 0.476658 | 7.2:-20113817 | MS.gene26652:CDS |
AAGAAAATGGATCAGTACAT+AGG | 0.480090 | 7.2:-20118206 | MS.gene26652:CDS |
TTAACTAACCACATATCTTC+AGG | 0.481000 | 7.2:+20113246 | None:intergenic |
GAGCAAGCTTTGCTTTAAAA+GGG | 0.481807 | 7.2:+20114923 | None:intergenic |
CTGACCAAATCGCTATGTTC+AGG | 0.482183 | 7.2:+20119439 | None:intergenic |
AGATGATGTCAATCTACAAA+TGG | 0.482779 | 7.2:-20118380 | MS.gene26652:CDS |
TATGTTGTAGGTGCGCATTT+GGG | 0.484219 | 7.2:-20118455 | MS.gene26652:intron |
GCACAACCAACACGATTCTC+AGG | 0.484869 | 7.2:-20114878 | MS.gene26652:intron |
ATTTCAGGATGGAAACCATA+TGG | 0.490479 | 7.2:-20113729 | MS.gene26652:CDS |
CAGGCAAACCCTTCTTATGA+TGG | 0.493947 | 7.2:-20119472 | MS.gene26652:CDS |
TGGTGGTGGACTGGAGAGGT+AGG | 0.495460 | 7.2:+20114173 | None:intergenic |
TACAGTAACTGTGCCCAAGC+AGG | 0.497191 | 7.2:-20114092 | MS.gene26652:CDS |
GAAGCAACTCGCCAAATGCT+AGG | 0.497695 | 7.2:+20114986 | None:intergenic |
TGGTGGCCTGTCTACTAGCA+AGG | 0.503594 | 7.2:-20118133 | MS.gene26652:CDS |
CACTGTCATGGTCCTATTGG+TGG | 0.504513 | 7.2:+20114156 | None:intergenic |
CCTCTGAGTGATGATGAAAA+AGG | 0.508998 | 7.2:+20122357 | None:intergenic |
AAGGAAGATCCATCATAAGA+AGG | 0.510225 | 7.2:+20119463 | None:intergenic |
TAGGTGTGTCGCCTTTGAAA+CGG | 0.512358 | 7.2:+20113539 | None:intergenic |
ACATTTGGGCAGGAAACCAT+TGG | 0.512552 | 7.2:-20118856 | MS.gene26652:intron |
GGAGCTCTTAGCATTTCTGC+TGG | 0.515432 | 7.2:-20114771 | MS.gene26652:CDS |
AGAAAATGGATCAGTACATA+GGG | 0.516053 | 7.2:-20118205 | MS.gene26652:CDS |
CGAGTTGCTTCGAAAACTAT+GGG | 0.518107 | 7.2:-20114974 | MS.gene26652:CDS |
GTCACCACAAGAGGTTCATT+CGG | 0.518651 | 7.2:-20118018 | MS.gene26652:CDS |
CTCTACTGCAAATTCTGTCT+GGG | 0.519092 | 7.2:+20119063 | None:intergenic |
ACAAGTAATTGAAGTCGTAA+AGG | 0.519494 | 7.2:+20119034 | None:intergenic |
CATCATAAGAAGGGTTTGCC+TGG | 0.521660 | 7.2:+20119473 | None:intergenic |
CCAGACAGAATTTGCAGTAG+AGG | 0.524583 | 7.2:-20119062 | MS.gene26652:CDS |
GGAGCAATTGGTGTTCGCCC+AGG | 0.525269 | 7.2:+20114949 | None:intergenic |
AGCTTTGCTTTAAAAGGGCG+AGG | 0.525769 | 7.2:+20114928 | None:intergenic |
ACAAATCATTATGGTAGTAT+GGG | 0.527122 | 7.2:-20111093 | MS.gene26652:CDS |
CTAAAGTACCTAGCGAACTC+TGG | 0.527697 | 7.2:+20117922 | None:intergenic |
ATTCATACAGATTCTTGTTG+AGG | 0.527765 | 7.2:-20118253 | MS.gene26652:intron |
CATTATGGTAGTATGGGTAG+TGG | 0.535483 | 7.2:-20111087 | MS.gene26652:CDS |
GGGACAATACAAGTCGACTT+TGG | 0.536583 | 7.2:-20114251 | MS.gene26652:CDS |
TGTCATGGTCCTATTGGTGG+TGG | 0.539331 | 7.2:+20114159 | None:intergenic |
ATGCACCCTTGCTAGTAGAC+AGG | 0.539509 | 7.2:+20118127 | None:intergenic |
GTGACACCAAGAGTCCCATA+AGG | 0.542425 | 7.2:+20118036 | None:intergenic |
TTGTCACCTTTCAACAGAAG+AGG | 0.543667 | 7.2:+20113624 | None:intergenic |
CTGTCTCCTCTTCTGTTGAA+AGG | 0.544052 | 7.2:-20113630 | MS.gene26652:CDS |
GACGATGACATTGTAAGCAA+TGG | 0.547745 | 7.2:-20110831 | MS.gene26652:CDS |
CATAATTGTTGATGTGTGCC+AGG | 0.548140 | 7.2:-20114621 | MS.gene26652:intron |
TAAGGATGATACCGTTTCAA+AGG | 0.548596 | 7.2:-20113550 | MS.gene26652:CDS |
AAATCAAGCGTATCAACTGC+TGG | 0.549808 | 7.2:-20118153 | MS.gene26652:CDS |
GGTGGTGGACTGGAGAGGTA+GGG | 0.550155 | 7.2:+20114174 | None:intergenic |
AGGAAGATCCATCATAAGAA+GGG | 0.553173 | 7.2:+20119464 | None:intergenic |
CACATATCTTCAGGCACCAA+AGG | 0.557668 | 7.2:+20113255 | None:intergenic |
ATCTCAACTAGGTATGGTGG+TGG | 0.559757 | 7.2:-20119124 | MS.gene26652:intron |
AGTGCTATAAAGAGGCCAGC+TGG | 0.564336 | 7.2:-20119412 | MS.gene26652:CDS |
GGAAGCGAATTCCGTTCTTG+TGG | 0.566633 | 7.2:-20118184 | MS.gene26652:CDS |
TTACTGTACACGGAGAAGGC+AGG | 0.567219 | 7.2:+20114107 | None:intergenic |
ATTGAGGACAACAATTGAAG+AGG | 0.567772 | 7.2:+20113861 | None:intergenic |
CTTCACTTATGAGTGATATG+TGG | 0.570545 | 7.2:+20110907 | None:intergenic |
TCCATCTCAACTAGGTATGG+TGG | 0.571057 | 7.2:-20119127 | MS.gene26652:intron |
CATCTTTGTAATCTTGTAAG+CGG | 0.571453 | 7.2:+20113818 | None:intergenic |
TACTATAAGAATAAGCAAGA+AGG | 0.573188 | 7.2:-20118990 | MS.gene26652:intron |
AAGAGGTGACATACAAGTAA+TGG | 0.574012 | 7.2:-20113664 | MS.gene26652:CDS |
TAACGAGAGGATAGTGCTTG+TGG | 0.575716 | 7.2:-20114017 | MS.gene26652:CDS |
CGAATACGTGAACCAAGACC+AGG | 0.576173 | 7.2:-20119491 | MS.gene26652:CDS |
GCGGTCATCATCTTTAATTG+AGG | 0.576325 | 7.2:+20113845 | None:intergenic |
AAGCAACTCGCCAAATGCTA+GGG | 0.576566 | 7.2:+20114987 | None:intergenic |
TCATAATTATCAATACCAGC+TGG | 0.578606 | 7.2:+20119397 | None:intergenic |
TTTGGGATTACTATGGCCAT+CGG | 0.580658 | 7.2:-20118438 | MS.gene26652:CDS |
GCTCAAGCTACTCCCAAAGA+AGG | 0.581218 | 7.2:-20122385 | MS.gene26652:CDS |
GGTGGCCTGTCTACTAGCAA+GGG | 0.581844 | 7.2:-20118132 | MS.gene26652:CDS |
CTTTGGTGCCTGAAGATATG+TGG | 0.581902 | 7.2:-20113254 | MS.gene26652:intron |
TACTGTACACGGAGAAGGCA+GGG | 0.584097 | 7.2:+20114108 | None:intergenic |
CGAACTCTGGTGTATGAACA+AGG | 0.584234 | 7.2:+20117935 | None:intergenic |
AATGAATCACCAAAACCTCT+GGG | 0.588338 | 7.2:+20111256 | None:intergenic |
ACAGTTACTGTACACGGAGA+AGG | 0.588490 | 7.2:+20114103 | None:intergenic |
ACTCTTGGTGTCACCACAAG+AGG | 0.588906 | 7.2:-20118027 | MS.gene26652:CDS |
ACTTCTGGCAAAGTCTCAAG+TGG | 0.590353 | 7.2:+20113363 | None:intergenic |
TTCATACACCAGAGTTCGCT+AGG | 0.591122 | 7.2:-20117930 | MS.gene26652:CDS |
ATAAAGTCTCGAGATGCTGA+TGG | 0.591882 | 7.2:-20114704 | MS.gene26652:CDS |
TCTGATGATAAAATCACAAG+AGG | 0.596105 | 7.2:-20113681 | MS.gene26652:CDS |
ATAGTAGAGGTAATGTCGGT+AGG | 0.596197 | 7.2:+20113520 | None:intergenic |
GATTGATAATACTGGATCAG+AGG | 0.597514 | 7.2:-20119371 | MS.gene26652:CDS |
TCATCAAGACATGCTTCCGA+TGG | 0.600964 | 7.2:+20118422 | None:intergenic |
AGCAAACCTGAGAATCGTGT+TGG | 0.601687 | 7.2:+20114872 | None:intergenic |
GGATCAGAGGACTCTAGTAC+AGG | 0.603624 | 7.2:-20119358 | MS.gene26652:CDS |
CTATGTATTACTTCCTCGAG+AGG | 0.604430 | 7.2:-20119299 | MS.gene26652:CDS |
TCAGTTCAAGTGCTATAAAG+AGG | 0.604458 | 7.2:-20119420 | MS.gene26652:CDS |
CTATTGGTGGTGGACTGGAG+AGG | 0.604811 | 7.2:+20114169 | None:intergenic |
TTCGAAAACTATGGGCACCT+GGG | 0.606369 | 7.2:-20114966 | MS.gene26652:CDS |
GGTAGGGAAAGGTACATGAA+AGG | 0.609587 | 7.2:+20114190 | None:intergenic |
ACCAATAGTAGAGGTAATGT+CGG | 0.610155 | 7.2:+20113516 | None:intergenic |
AATTGGTCCCAAACCTCTCG+AGG | 0.610291 | 7.2:+20119286 | None:intergenic |
CAAATCGCTATGTTCAGGAA+AGG | 0.611988 | 7.2:+20119444 | None:intergenic |
ACTAGCAAGGGTGCATCTAG+AGG | 0.614599 | 7.2:-20118120 | MS.gene26652:CDS |
ACTAGAACTCTTGCTGATGA+CGG | 0.615834 | 7.2:+20113432 | None:intergenic |
TGGCCGACCTGATGAAGAAG+TGG | 0.617239 | 7.2:-20114684 | MS.gene26652:CDS |
TTGTAATCTTGTAAGCGGCA+AGG | 0.618788 | 7.2:+20113823 | None:intergenic |
ACTACCATAATGATTTGTAA+GGG | 0.626739 | 7.2:+20111098 | None:intergenic |
ACAGTAACTGTGCCCAAGCA+GGG | 0.627024 | 7.2:-20114091 | MS.gene26652:CDS |
ATAACTTTCCTCTCCAACGT+AGG | 0.628256 | 7.2:+20119100 | None:intergenic |
TGACACCAAGAGTCCCATAA+GGG | 0.628734 | 7.2:+20118037 | None:intergenic |
GTAAAACAGAACATAGGCAG+CGG | 0.633976 | 7.2:+20110869 | None:intergenic |
AGAGATCTTATACAAGCACT+AGG | 0.635071 | 7.2:-20114061 | MS.gene26652:CDS |
GTTCGCTAGGTACTTTAGGG+AGG | 0.638205 | 7.2:-20117917 | MS.gene26652:CDS |
GTGGTGGACCTACGTTGGAG+AGG | 0.642618 | 7.2:-20119108 | MS.gene26652:CDS |
AAACAAGTGTACAAAGAGAG+AGG | 0.643468 | 7.2:+20113300 | None:intergenic |
CAGCCACTTCTTCATCAGGT+CGG | 0.647006 | 7.2:+20114681 | None:intergenic |
TTATCATCTACCAATAGTAG+AGG | 0.650874 | 7.2:+20113507 | None:intergenic |
CCTCCGGTAAAACAGAACAT+AGG | 0.652037 | 7.2:+20110863 | None:intergenic |
ACCACAAGAGGTTCATTCGG+TGG | 0.652935 | 7.2:-20118015 | MS.gene26652:CDS |
TTGGGCACAGTTACTGTACA+CGG | 0.662789 | 7.2:+20114097 | None:intergenic |
TCAAGCGTATCAACTGCTGG+TGG | 0.665672 | 7.2:-20118150 | MS.gene26652:CDS |
GCTCATTGAAGCATAACGAG+AGG | 0.666855 | 7.2:-20114030 | MS.gene26652:CDS |
TGGACTGGAGAGGTAGGGAA+AGG | 0.668299 | 7.2:+20114179 | None:intergenic |
CGAGAGGATAGTGCTTGTGG+AGG | 0.668464 | 7.2:-20114014 | MS.gene26652:intron |
TATTGAATTTGACACCACGT+TGG | 0.671514 | 7.2:+20113575 | None:intergenic |
TGATTTATGGAGGCTCCCAG+AGG | 0.679110 | 7.2:-20111271 | MS.gene26652:CDS |
GCATGTCTTGATGAATGACA+TGG | 0.681629 | 7.2:-20118413 | MS.gene26652:CDS |
TGGTTGTGCCCACTGAACTG+AGG | 0.684224 | 7.2:+20114892 | None:intergenic |
ACTCGCATACCATTTCAGGA+TGG | 0.684853 | 7.2:-20113740 | MS.gene26652:CDS |
GTATGGTGGTGGACCTACGT+TGG | 0.692158 | 7.2:-20119113 | MS.gene26652:CDS |
ACCACCGAATGAACCTCTTG+TGG | 0.692235 | 7.2:+20118014 | None:intergenic |
CGATGACATTGTAAGCAATG+GGG | 0.703629 | 7.2:-20110829 | MS.gene26652:CDS |
ATACTTACAACCATGCCGAG+TGG | 0.709691 | 7.2:+20117865 | None:intergenic |
TAATCTTGTAAGCGGCAAGG+CGG | 0.729081 | 7.2:+20113826 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 20110824 | 20122494 | 20110824 | ID=MS.gene26652 |
chr7.2 | mRNA | 20110824 | 20122494 | 20110824 | ID=MS.gene26652.t1;Parent=MS.gene26652 |
chr7.2 | exon | 20122358 | 20122494 | 20122358 | ID=MS.gene26652.t1.exon1;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20122358 | 20122494 | 20122358 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20119277 | 20119531 | 20119277 | ID=MS.gene26652.t1.exon2;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20119277 | 20119531 | 20119277 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20118991 | 20119135 | 20118991 | ID=MS.gene26652.t1.exon3;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20118991 | 20119135 | 20118991 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20118807 | 20118866 | 20118807 | ID=MS.gene26652.t1.exon4;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20118807 | 20118866 | 20118807 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20118372 | 20118467 | 20118372 | ID=MS.gene26652.t1.exon5;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20118372 | 20118467 | 20118372 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20117873 | 20118265 | 20117873 | ID=MS.gene26652.t1.exon6;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20117873 | 20118265 | 20117873 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20114879 | 20115019 | 20114879 | ID=MS.gene26652.t1.exon7;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20114879 | 20115019 | 20114879 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20114622 | 20114792 | 20114622 | ID=MS.gene26652.t1.exon8;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20114622 | 20114792 | 20114622 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20114015 | 20114272 | 20114015 | ID=MS.gene26652.t1.exon9;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20114015 | 20114272 | 20114015 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20113795 | 20113919 | 20113795 | ID=MS.gene26652.t1.exon10;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20113795 | 20113919 | 20113795 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20113255 | 20113764 | 20113255 | ID=MS.gene26652.t1.exon11;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20113255 | 20113764 | 20113255 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20111065 | 20111338 | 20111065 | ID=MS.gene26652.t1.exon12;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20111065 | 20111338 | 20111065 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
chr7.2 | exon | 20110824 | 20110967 | 20110824 | ID=MS.gene26652.t1.exon13;Parent=MS.gene26652.t1 |
chr7.2 | CDS | 20110824 | 20110967 | 20110824 | ID=cds.MS.gene26652.t1;Parent=MS.gene26652.t1 |
Gene Sequence |
Protein sequence |