Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26900.t1 | XP_024626113.1 | 97.1 | 306 | 9 | 0 | 1 | 306 | 1 | 306 | 1.80E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26900.t1 | B2UXL6 | 38.1 | 270 | 124 | 11 | 11 | 276 | 3 | 233 | 3.6e-30 | 133.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26900.t1 | G7ID60 | 97.1 | 306 | 9 | 0 | 1 | 306 | 1 | 306 | 1.3e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051956 | MS.gene26900 | PPI |
| MS.gene76157 | MS.gene26900 | PPI |
| MS.gene26900 | MS.gene85230 | PPI |
| MS.gene26900 | MS.gene057003 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26900.t1 | MTR_1g104500 | 97.059 | 306 | 9 | 0 | 1 | 306 | 1 | 306 | 0.0 | 617 |
| MS.gene26900.t1 | MTR_5g006290 | 69.707 | 307 | 92 | 1 | 1 | 306 | 1 | 307 | 1.26e-164 | 460 |
| MS.gene26900.t1 | MTR_5g006290 | 72.112 | 251 | 69 | 1 | 1 | 250 | 1 | 251 | 2.58e-138 | 392 |
| MS.gene26900.t1 | MTR_5g006300 | 66.797 | 256 | 70 | 4 | 2 | 250 | 3 | 250 | 3.20e-121 | 349 |
| MS.gene26900.t1 | MTR_2g099720 | 35.093 | 322 | 172 | 5 | 11 | 297 | 53 | 372 | 2.12e-62 | 202 |
| MS.gene26900.t1 | MTR_1g104513 | 81.013 | 79 | 14 | 1 | 205 | 283 | 1 | 78 | 8.14e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26900.t1 | AT4G14930 | 61.258 | 302 | 109 | 5 | 11 | 306 | 16 | 315 | 5.42e-134 | 383 |
| MS.gene26900.t1 | AT4G14930 | 60.148 | 271 | 101 | 4 | 11 | 276 | 16 | 284 | 1.28e-118 | 343 |
| MS.gene26900.t1 | AT1G72880 | 34.535 | 333 | 169 | 6 | 2 | 294 | 54 | 377 | 3.35e-62 | 202 |
| MS.gene26900.t1 | AT1G72880 | 34.535 | 333 | 169 | 6 | 2 | 294 | 54 | 377 | 3.35e-62 | 202 |
Find 67 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAAATAAAAGACTTTC+AGG | 0.149345 | 1.4:-80373900 | None:intergenic |
| ATTACAGCCTATGCAGTTTC+TGG | 0.163150 | 1.4:+80372105 | MS.gene26900:CDS |
| ACCTATCATAAGTGCTTTAC+TGG | 0.246186 | 1.4:+80373487 | MS.gene26900:CDS |
| TCCATCAATGTGAACTTTCT+TGG | 0.249967 | 1.4:-80372082 | None:intergenic |
| CGGCAAGGGTGAAGTCATTT+AGG | 0.287038 | 1.4:-80373451 | None:intergenic |
| CTTTCCTACAGTTGCTGATC+TGG | 0.331224 | 1.4:+80372458 | MS.gene26900:CDS |
| TCCAGCTGATTGCACTTCTC+TGG | 0.339357 | 1.4:+80372419 | MS.gene26900:CDS |
| TGAACTTTCTTGGCAGCTAT+AGG | 0.341277 | 1.4:-80372072 | None:intergenic |
| ACGAATCAGGGGCGCAGATT+TGG | 0.341315 | 1.4:-80371536 | None:intergenic |
| GTTTACTCAGGCACAGTTGC+TGG | 0.358083 | 1.4:+80373218 | MS.gene26900:CDS |
| GCCAAGAAAGTTCACATTGA+TGG | 0.372764 | 1.4:+80372081 | MS.gene26900:CDS |
| CATTATGTTACATACGAATC+AGG | 0.383749 | 1.4:-80371549 | None:intergenic |
| TGCACCTGGCCTCAGAGCTT+TGG | 0.388469 | 1.4:+80371479 | MS.gene26900:CDS |
| GAACTTTCTTGGCAGCTATA+GGG | 0.401291 | 1.4:-80372071 | None:intergenic |
| TTCTGATTTGCAATGTTGCT+TGG | 0.405875 | 1.4:-80373563 | None:intergenic |
| CCCTCTTGCTGCTATCTCTC+AGG | 0.436326 | 1.4:+80374201 | MS.gene26900:CDS |
| TCATATGAAATTGAGATAGA+AGG | 0.443844 | 1.4:-80373269 | None:intergenic |
| GATTTGGAGATTGTAGAGAT+TGG | 0.456249 | 1.4:-80371520 | None:intergenic |
| CTATCTCAATTTCATATGAC+TGG | 0.460076 | 1.4:+80373273 | MS.gene26900:CDS |
| CGCTATCATCATGATCAAGT+TGG | 0.466868 | 1.4:-80374055 | None:intergenic |
| GGGGTACAGGCTAACTAAGC+AGG | 0.477015 | 1.4:+80373752 | MS.gene26900:intron |
| ATGTGCTGCTGTTTCTGCAT+TGG | 0.486066 | 1.4:-80373850 | None:intergenic |
| GGGTAAGAGTTTAATCAAGA+TGG | 0.486138 | 1.4:+80373773 | MS.gene26900:CDS |
| CCCAGAGAAGTGCAATCAGC+TGG | 0.489447 | 1.4:-80372420 | None:intergenic |
| GTGTCTCCCAAAAGGGGTAC+AGG | 0.490163 | 1.4:+80373739 | MS.gene26900:intron |
| AACTGTAGGAAAGAGTGCTT+TGG | 0.496602 | 1.4:-80372448 | None:intergenic |
| ACCAGTAAAGCACTTATGAT+AGG | 0.498108 | 1.4:-80373488 | None:intergenic |
| TAAGCATGCTTGCGCGGCAA+GGG | 0.505144 | 1.4:-80373465 | None:intergenic |
| GTAAGCATGCTTGCGCGGCA+AGG | 0.505343 | 1.4:-80373466 | None:intergenic |
| ATCATGATCACAAACGATGA+TGG | 0.505645 | 1.4:+80371450 | MS.gene26900:CDS |
| CGGTGATCATAAATCTCTGC+AGG | 0.508096 | 1.4:+80374076 | MS.gene26900:CDS |
| TGCTGCTATCTCTCAGGCAG+AGG | 0.508377 | 1.4:+80374207 | MS.gene26900:CDS |
| CCAGCTGATTGCACTTCTCT+GGG | 0.509126 | 1.4:+80372420 | MS.gene26900:CDS |
| TACTATCAATCCAGGGTCAA+AGG | 0.516690 | 1.4:+80373419 | MS.gene26900:intron |
| GCTATCATCATGATCAAGTT+GGG | 0.519152 | 1.4:-80374054 | None:intergenic |
| CTCAGAATCTCCCTCTTCAT+CGG | 0.524209 | 1.4:+80374270 | MS.gene26900:CDS |
| GGTAATAAGTGGCATAAACA+TGG | 0.524866 | 1.4:+80372828 | MS.gene26900:intron |
| GATTGTAGAGATTGGTGTCA+AGG | 0.525117 | 1.4:-80371512 | None:intergenic |
| ATTATGTTACATACGAATCA+GGG | 0.529718 | 1.4:-80371548 | None:intergenic |
| TTAACCAAAGCTCTGAGGCC+AGG | 0.534454 | 1.4:-80371483 | None:intergenic |
| CACAGTTGCTGGAGCTCGAG+AGG | 0.534617 | 1.4:+80373229 | MS.gene26900:CDS |
| CTGTGAGTCACAGTATTACA+TGG | 0.535793 | 1.4:+80372043 | MS.gene26900:CDS |
| GGTAAGAGTTTAATCAAGAT+GGG | 0.542532 | 1.4:+80373774 | MS.gene26900:CDS |
| AGAGTTTAATCAAGATGGGA+TGG | 0.551266 | 1.4:+80373778 | MS.gene26900:CDS |
| CATTATAGAGCCGATGAAGA+GGG | 0.552043 | 1.4:-80374280 | None:intergenic |
| CCTGAGAGATAGCAGCAAGA+GGG | 0.560930 | 1.4:-80374201 | None:intergenic |
| GAAGCAAATCACCTCTGAGA+TGG | 0.562287 | 1.4:+80373800 | MS.gene26900:CDS |
| ATGGAGGAAGGTAAGAATAA+CGG | 0.565437 | 1.4:+80371420 | MS.gene26900:CDS |
| GCATTATAGAGCCGATGAAG+AGG | 0.567345 | 1.4:-80374281 | None:intergenic |
| GCATATTTACAGGTAATAAG+TGG | 0.582535 | 1.4:+80372817 | MS.gene26900:intron |
| CTGAGAGATAGCAGCAAGAG+GGG | 0.583404 | 1.4:-80374200 | None:intergenic |
| GATAGGTAAGCATGCTTGCG+CGG | 0.591817 | 1.4:-80373471 | None:intergenic |
| AAGCAACATTGCAAATCAGA+AGG | 0.597269 | 1.4:+80373565 | MS.gene26900:CDS |
| CATACCAGATCAGCAACTGT+AGG | 0.610857 | 1.4:-80372462 | None:intergenic |
| CAAATCACCTCTGAGATGGA+AGG | 0.617751 | 1.4:+80373804 | MS.gene26900:CDS |
| GCCTGAGAGATAGCAGCAAG+AGG | 0.617751 | 1.4:-80374202 | None:intergenic |
| CATTCAAGCAAAATGGAGGA+AGG | 0.620237 | 1.4:+80371408 | None:intergenic |
| GGGTACAGGCTAACTAAGCA+GGG | 0.630776 | 1.4:+80373753 | MS.gene26900:CDS |
| GATCATAAATCTCTGCAGGA+AGG | 0.638161 | 1.4:+80374080 | MS.gene26900:CDS |
| AAACAAACCAGAAACTGCAT+AGG | 0.644138 | 1.4:-80372112 | None:intergenic |
| GATGATGGAATCGATGCACC+TGG | 0.645617 | 1.4:+80371465 | MS.gene26900:CDS |
| GTAATAAGTGGCATAAACAT+GGG | 0.650041 | 1.4:+80372829 | MS.gene26900:CDS |
| CAACTTGATCATGATGATAG+CGG | 0.662382 | 1.4:+80374056 | MS.gene26900:CDS |
| GAGCTTTAACCAAAGCTCTG+AGG | 0.681690 | 1.4:-80371488 | None:intergenic |
| ATAAACATGGGTAACAACTG+TGG | 0.695093 | 1.4:+80372841 | MS.gene26900:CDS |
| TTATGTTACATACGAATCAG+GGG | 0.702173 | 1.4:-80371547 | None:intergenic |
| GAGGAAGGTAAGAATAACGG+AGG | 0.716794 | 1.4:+80371423 | MS.gene26900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAAATAAAAATTAT+TGG | + | chr1.4:80374112-80374131 | MS.gene26900:intron | 0.0% |
| !! | ACCAAAATAAATAAATAAAA+TGG | - | chr1.4:80372605-80372624 | None:intergenic | 10.0% |
| !!! | ACCATTTTATTTATTTATTT+TGG | + | chr1.4:80372601-80372620 | MS.gene26900:intron | 10.0% |
| !!! | AGTACAAATATTTTTTTTAA+TGG | - | chr1.4:80373175-80373194 | None:intergenic | 10.0% |
| !!! | TTTTATTTATTTATTTTGGT+AGG | + | chr1.4:80372605-80372624 | MS.gene26900:intron | 10.0% |
| !! | GAAAAACATAAATTATATCA+AGG | - | chr1.4:80372154-80372173 | None:intergenic | 15.0% |
| !! | TTACTTAACTATTTCAAAAT+TGG | + | chr1.4:80371998-80372017 | MS.gene26900:intron | 15.0% |
| !! | TTTAATACAAGTTAATGAAA+GGG | - | chr1.4:80372286-80372305 | None:intergenic | 15.0% |
| !!! | AAAAAATATTTGTACTGATT+AGG | + | chr1.4:80373179-80373198 | MS.gene26900:intron | 15.0% |
| !!! | AGAGCTTTTATTAATATATA+TGG | + | chr1.4:80373366-80373385 | MS.gene26900:intron | 15.0% |
| !!! | GTATACAATTTTAATTTTGT+AGG | + | chr1.4:80374022-80374041 | MS.gene26900:intron | 15.0% |
| !!! | TTTTAATACAAGTTAATGAA+AGG | - | chr1.4:80372287-80372306 | None:intergenic | 15.0% |
| !! | AACATAAATTATATCAAGGA+AGG | - | chr1.4:80372150-80372169 | None:intergenic | 20.0% |
| !! | ACATAAATTATATCAAGGAA+GGG | - | chr1.4:80372149-80372168 | None:intergenic | 20.0% |
| !!! | AATTGATTCTATTTGAAGTT+AGG | + | chr1.4:80371789-80371808 | MS.gene26900:intron | 20.0% |
| !!! | AATTTTGGTCTATTTAAAAG+CGG | - | chr1.4:80371711-80371730 | None:intergenic | 20.0% |
| !!! | AGATTGTCAAAACTATTTTA+AGG | + | chr1.4:80374231-80374250 | MS.gene26900:CDS | 20.0% |
| !!! | ATTTTAATTTTGTAGGTAAG+AGG | + | chr1.4:80374029-80374048 | MS.gene26900:intron | 20.0% |
| !!! | GTTAATTTGTTATGATTCAA+AGG | + | chr1.4:80373691-80373710 | MS.gene26900:intron | 20.0% |
| !!! | TAAATAAAATGGTTTGCATT+TGG | - | chr1.4:80372594-80372613 | None:intergenic | 20.0% |
| !!! | TTTGTAAAACTGTTTTTCAT+CGG | + | chr1.4:80372243-80372262 | MS.gene26900:intron | 20.0% |
| ! | AAGACGAATTTGTCAAAAAA+TGG | - | chr1.4:80373954-80373973 | None:intergenic | 25.0% |
| ! | AATATAAAACAAGTGCTATC+TGG | - | chr1.4:80373651-80373670 | None:intergenic | 25.0% |
| ! | ACTCCTTTGGTTAAATAAAA+AGG | - | chr1.4:80373008-80373027 | None:intergenic | 25.0% |
| ! | ACTTCAAATAGAATCAATTC+TGG | - | chr1.4:80371788-80371807 | None:intergenic | 25.0% |
| ! | AGATTAATATCTGACCATTT+GGG | + | chr1.4:80373394-80373413 | MS.gene26900:intron | 25.0% |
| ! | AGTAATTACATTGTTGGAAT+GGG | + | chr1.4:80372532-80372551 | MS.gene26900:intron | 25.0% |
| ! | ATTAAGATGACTAAAGATGA+GGG | - | chr1.4:80372894-80372913 | None:intergenic | 25.0% |
| ! | ATTATGTTACATACGAATCA+GGG | - | chr1.4:80371551-80371570 | None:intergenic | 25.0% |
| ! | CATAAATTATATCAAGGAAG+GGG | - | chr1.4:80372148-80372167 | None:intergenic | 25.0% |
| ! | GTAAAAAATTTGCATAAGGA+AGG | - | chr1.4:80372393-80372412 | None:intergenic | 25.0% |
| ! | TAGATTAATATCTGACCATT+TGG | + | chr1.4:80373393-80373412 | MS.gene26900:intron | 25.0% |
| ! | TATTAAGATGACTAAAGATG+AGG | - | chr1.4:80372895-80372914 | None:intergenic | 25.0% |
| ! | TCATATGAAATTGAGATAGA+AGG | - | chr1.4:80373272-80373291 | None:intergenic | 25.0% |
| ! | TCCTGTAAAAAATTTGCATA+AGG | - | chr1.4:80372397-80372416 | None:intergenic | 25.0% |
| ! | TCTTTGAGTAATTACATTGT+TGG | + | chr1.4:80372526-80372545 | MS.gene26900:intron | 25.0% |
| ! | TTATTACCTGTAAATATGCA+TGG | - | chr1.4:80372816-80372835 | None:intergenic | 25.0% |
| !! | AAATAGACCAAAATTGATTC+CGG | + | chr1.4:80371716-80371735 | MS.gene26900:intron | 25.0% |
| !! | TAACTGATTCTCGTAAAATA+GGG | - | chr1.4:80371669-80371688 | None:intergenic | 25.0% |
| !! | TACATATTTTCTTGTCTTAC+AGG | + | chr1.4:80372363-80372382 | MS.gene26900:intron | 25.0% |
| !! | TTAACTGATTCTCGTAAAAT+AGG | - | chr1.4:80371670-80371689 | None:intergenic | 25.0% |
| !! | TTTTTAATGGCAAATGTTAG+TGG | - | chr1.4:80373162-80373181 | None:intergenic | 25.0% |
| !!! | ATATTCAAAAAGCACTTTTG+AGG | - | chr1.4:80373536-80373555 | None:intergenic | 25.0% |
| !!! | CATGCTTTTTTTAGTTGTAA+AGG | - | chr1.4:80372945-80372964 | None:intergenic | 25.0% |
| !!! | GTATATTTGAAATGCTTTTG+TGG | + | chr1.4:80373295-80373314 | MS.gene26900:intron | 25.0% |
| !!! | GTCAAAACTATTTTAAGGAT+TGG | + | chr1.4:80374236-80374255 | MS.gene26900:CDS | 25.0% |
| !!! | TCCTTATGCAAATTTTTTAC+AGG | + | chr1.4:80372393-80372412 | MS.gene26900:intron | 25.0% |
| ACGAATTTGTCAAAAAATGG+TGG | - | chr1.4:80373951-80373970 | None:intergenic | 30.0% | |
| CAGTTAATTAAGTGTACGTT+TGG | + | chr1.4:80371683-80371702 | MS.gene26900:intron | 30.0% | |
| CATTATGTTACATACGAATC+AGG | - | chr1.4:80371552-80371571 | None:intergenic | 30.0% | |
| CTATCTCAATTTCATATGAC+TGG | + | chr1.4:80373273-80373292 | MS.gene26900:CDS | 30.0% | |
| CTTGCAAATAAAAGACTTTC+AGG | - | chr1.4:80373903-80373922 | None:intergenic | 30.0% | |
| GAGTAATTACATTGTTGGAA+TGG | + | chr1.4:80372531-80372550 | MS.gene26900:intron | 30.0% | |
| GATTAATATCTGACCATTTG+GGG | + | chr1.4:80373395-80373414 | MS.gene26900:intron | 30.0% | |
| GCATATTTACAGGTAATAAG+TGG | + | chr1.4:80372817-80372836 | MS.gene26900:intron | 30.0% | |
| GGTAAGAGTTTAATCAAGAT+GGG | + | chr1.4:80373774-80373793 | MS.gene26900:CDS | 30.0% | |
| GTAATAAGTGGCATAAACAT+GGG | + | chr1.4:80372829-80372848 | MS.gene26900:CDS | 30.0% | |
| TCAAATAGAATCAATTCTGG+AGG | - | chr1.4:80371785-80371804 | None:intergenic | 30.0% | |
| TGAGTAAACACTGCATAAAA+GGG | - | chr1.4:80373207-80373226 | None:intergenic | 30.0% | |
| TTATGTTACATACGAATCAG+GGG | - | chr1.4:80371550-80371569 | None:intergenic | 30.0% | |
| TTATTTAACCAAAGGAGTAG+TGG | + | chr1.4:80373010-80373029 | MS.gene26900:intron | 30.0% | |
| ! | AATTTTACGAACACCTTTCA+AGG | - | chr1.4:80372631-80372650 | None:intergenic | 30.0% |
| ! | TTTTGTGCTCATAACTGTAA+TGG | + | chr1.4:80373068-80373087 | MS.gene26900:intron | 30.0% |
| ! | TTTTTCATCGGATGAAGTTT+TGG | + | chr1.4:80372255-80372274 | MS.gene26900:intron | 30.0% |
| !! | AGGCCTTTTTATTTAACCAA+AGG | + | chr1.4:80373002-80373021 | MS.gene26900:intron | 30.0% |
| !! | CTTTTATTTGCAAGAGAAGT+AGG | + | chr1.4:80373909-80373928 | MS.gene26900:intron | 30.0% |
| AAACAAACCAGAAACTGCAT+AGG | - | chr1.4:80372115-80372134 | None:intergenic | 35.0% | |
| AACAGACATAATACAGAGTG+TGG | + | chr1.4:80374141-80374160 | MS.gene26900:intron | 35.0% | |
| AACCAGAAGTAGTGCAAATA+AGG | - | chr1.4:80372675-80372694 | None:intergenic | 35.0% | |
| AAGCAACATTGCAAATCAGA+AGG | + | chr1.4:80373565-80373584 | MS.gene26900:CDS | 35.0% | |
| AATGTGCCATGCATATTTAC+AGG | + | chr1.4:80372807-80372826 | MS.gene26900:intron | 35.0% | |
| ACAGAATAATTGTGCATCTC+CGG | - | chr1.4:80371738-80371757 | None:intergenic | 35.0% | |
| ACCAGAAGTAGTGCAAATAA+GGG | - | chr1.4:80372674-80372693 | None:intergenic | 35.0% | |
| ACCTATCATAAGTGCTTTAC+TGG | + | chr1.4:80373487-80373506 | MS.gene26900:CDS | 35.0% | |
| AGAGTTTAATCAAGATGGGA+TGG | + | chr1.4:80373778-80373797 | MS.gene26900:CDS | 35.0% | |
| ATAAACATGGGTAACAACTG+TGG | + | chr1.4:80372841-80372860 | MS.gene26900:CDS | 35.0% | |
| ATCATGATCACAAACGATGA+TGG | + | chr1.4:80371450-80371469 | MS.gene26900:CDS | 35.0% | |
| ATGGAGGAAGGTAAGAATAA+CGG | + | chr1.4:80371420-80371439 | MS.gene26900:CDS | 35.0% | |
| CAACTTGATCATGATGATAG+CGG | + | chr1.4:80374056-80374075 | MS.gene26900:CDS | 35.0% | |
| CTGAGTAAACACTGCATAAA+AGG | - | chr1.4:80373208-80373227 | None:intergenic | 35.0% | |
| GAGTAACCATTATGTACGTA+CGG | - | chr1.4:80371621-80371640 | None:intergenic | 35.0% | |
| GATAAATAATTTCGTCCAGC+TGG | + | chr1.4:80372779-80372798 | MS.gene26900:intron | 35.0% | |
| GATTCTGACTAATAGTGAGT+TGG | - | chr1.4:80371916-80371935 | None:intergenic | 35.0% | |
| GATTTGGAGATTGTAGAGAT+TGG | - | chr1.4:80371523-80371542 | None:intergenic | 35.0% | |
| GCTATCATCATGATCAAGTT+GGG | - | chr1.4:80374057-80374076 | None:intergenic | 35.0% | |
| GGGTAAGAGTTTAATCAAGA+TGG | + | chr1.4:80373773-80373792 | MS.gene26900:CDS | 35.0% | |
| GGTAATAAGTGGCATAAACA+TGG | + | chr1.4:80372828-80372847 | MS.gene26900:intron | 35.0% | |
| TCCATCAATGTGAACTTTCT+TGG | - | chr1.4:80372085-80372104 | None:intergenic | 35.0% | |
| ! | ACCAGTAAAGCACTTATGAT+AGG | - | chr1.4:80373491-80373510 | None:intergenic | 35.0% |
| ! | AGTGAATGGTGTTTGGAATT+TGG | - | chr1.4:80371887-80371906 | None:intergenic | 35.0% |
| ! | ATAATTTTTCTCCTTCGTCC+GGG | - | chr1.4:80373135-80373154 | None:intergenic | 35.0% |
| ! | CTTTTATGCAGTGTTTACTC+AGG | + | chr1.4:80373206-80373225 | MS.gene26900:intron | 35.0% |
| ! | GATAATTTTTCTCCTTCGTC+CGG | - | chr1.4:80373136-80373155 | None:intergenic | 35.0% |
| ! | TAGGAGGAAATGGGATTTTA+AGG | + | chr1.4:80372982-80373001 | MS.gene26900:intron | 35.0% |
| ! | TTCTGATTTGCAATGTTGCT+TGG | - | chr1.4:80373566-80373585 | None:intergenic | 35.0% |
| ! | TTGCAAATCAGAAGGTATGT+TGG | + | chr1.4:80373573-80373592 | MS.gene26900:intron | 35.0% |
| !! | AACTGTAATGGATTGAGCTA+AGG | + | chr1.4:80373080-80373099 | MS.gene26900:intron | 35.0% |
| !! | ACTGTAATGGATTGAGCTAA+GGG | + | chr1.4:80373081-80373100 | MS.gene26900:intron | 35.0% |
| !! | AGCACTTTTGAGGATATCTT+TGG | - | chr1.4:80373526-80373545 | None:intergenic | 35.0% |
| !!! | TTATTTTGGTAGGCCTTGAA+AGG | + | chr1.4:80372615-80372634 | MS.gene26900:intron | 35.0% |
| AAACGAAAAACTCGAACTGC+AGG | - | chr1.4:80372505-80372524 | None:intergenic | 40.0% | |
| AGCATGTTTGTGAAGAGAGA+AGG | + | chr1.4:80372959-80372978 | MS.gene26900:intron | 40.0% | |
| AGCTTCATCAGAAAACACTG+AGG | - | chr1.4:80372200-80372219 | None:intergenic | 40.0% | |
| ATTACAGCCTATGCAGTTTC+TGG | + | chr1.4:80372105-80372124 | MS.gene26900:CDS | 40.0% | |
| CATCAACCGTACGTACATAA+TGG | + | chr1.4:80371612-80371631 | MS.gene26900:intron | 40.0% | |
| CGCTATCATCATGATCAAGT+TGG | - | chr1.4:80374058-80374077 | None:intergenic | 40.0% | |
| CTGTGAGTCACAGTATTACA+TGG | + | chr1.4:80372043-80372062 | MS.gene26900:CDS | 40.0% | |
| GAACTTTCTTGGCAGCTATA+GGG | - | chr1.4:80372074-80372093 | None:intergenic | 40.0% | |
| GACAAGAAGCAGATAGAGTA+AGG | - | chr1.4:80372570-80372589 | None:intergenic | 40.0% | |
| GAGGTAAAGTGAATGGTGTT+TGG | - | chr1.4:80371894-80371913 | None:intergenic | 40.0% | |
| GATCATAAATCTCTGCAGGA+AGG | + | chr1.4:80374080-80374099 | MS.gene26900:CDS | 40.0% | |
| GCCAAGAAAGTTCACATTGA+TGG | + | chr1.4:80372081-80372100 | MS.gene26900:CDS | 40.0% | |
| TACTATCAATCCAGGGTCAA+AGG | + | chr1.4:80373419-80373438 | MS.gene26900:intron | 40.0% | |
| TGAACTTTCTTGGCAGCTAT+AGG | - | chr1.4:80372075-80372094 | None:intergenic | 40.0% | |
| TGTTTGTGAAGAGAGAAGGT+AGG | + | chr1.4:80372963-80372982 | MS.gene26900:intron | 40.0% | |
| TTCTTCTGTGTCTCCCAAAA+GGG | + | chr1.4:80373732-80373751 | MS.gene26900:intron | 40.0% | |
| TTGGGGATACTATCAATCCA+GGG | + | chr1.4:80373412-80373431 | MS.gene26900:intron | 40.0% | |
| TTTGGGGATACTATCAATCC+AGG | + | chr1.4:80373411-80373430 | MS.gene26900:intron | 40.0% | |
| ! | GGATTGATAGTATCCCCAAA+TGG | - | chr1.4:80373411-80373430 | None:intergenic | 40.0% |
| ! | TCCCTTATTTGCACTACTTC+TGG | + | chr1.4:80372670-80372689 | MS.gene26900:intron | 40.0% |
| ! | TCTGACTAATAGTGAGTTGG+AGG | - | chr1.4:80371913-80371932 | None:intergenic | 40.0% |
| ! | TGAGTTGGAGGTAAAGTGAA+TGG | - | chr1.4:80371901-80371920 | None:intergenic | 40.0% |
| ! | TGCATCTCCGGAATCAATTT+TGG | - | chr1.4:80371726-80371745 | None:intergenic | 40.0% |
| ! | TGCTTTTGTGGCTATATTGC+TGG | + | chr1.4:80373307-80373326 | MS.gene26900:intron | 40.0% |
| !! | AACTGTAGGAAAGAGTGCTT+TGG | - | chr1.4:80372451-80372470 | None:intergenic | 40.0% |
| !! | CTGTAATGGATTGAGCTAAG+GGG | + | chr1.4:80373082-80373101 | MS.gene26900:intron | 40.0% |
| !! | GATTGTAGAGATTGGTGTCA+AGG | - | chr1.4:80371515-80371534 | None:intergenic | 40.0% |
| AGAGAGAAGGTAGGAGGAAA+TGG | + | chr1.4:80372972-80372991 | MS.gene26900:intron | 45.0% | |
| ATGGCACATTAGAAACCAGC+TGG | - | chr1.4:80372797-80372816 | None:intergenic | 45.0% | |
| CATACCAGATCAGCAACTGT+AGG | - | chr1.4:80372465-80372484 | None:intergenic | 45.0% | |
| CATCCATGCATTTCACTGAG+TGG | + | chr1.4:80371642-80371661 | MS.gene26900:intron | 45.0% | |
| CGGTGATCATAAATCTCTGC+AGG | + | chr1.4:80374076-80374095 | MS.gene26900:CDS | 45.0% | |
| CTCAGAATCTCCCTCTTCAT+CGG | + | chr1.4:80374270-80374289 | MS.gene26900:CDS | 45.0% | |
| CTTTCCTACAGTTGCTGATC+TGG | + | chr1.4:80372458-80372477 | MS.gene26900:CDS | 45.0% | |
| GAAGTTCCCGAGTTAAAACC+CGG | + | chr1.4:80373114-80373133 | MS.gene26900:intron | 45.0% | |
| GAGAGAAGGTAGGAGGAAAT+GGG | + | chr1.4:80372973-80372992 | MS.gene26900:intron | 45.0% | |
| GAGCTATACCACTACTCCTT+TGG | - | chr1.4:80373021-80373040 | None:intergenic | 45.0% | |
| GAGGAAGGTAAGAATAACGG+AGG | + | chr1.4:80371423-80371442 | MS.gene26900:CDS | 45.0% | |
| GTTCTTCTGTGTCTCCCAAA+AGG | + | chr1.4:80373731-80373750 | MS.gene26900:intron | 45.0% | |
| TCTTCTGTGTCTCCCAAAAG+GGG | + | chr1.4:80373733-80373752 | MS.gene26900:intron | 45.0% | |
| TTGTGAAGAGAGAAGGTAGG+AGG | + | chr1.4:80372966-80372985 | MS.gene26900:intron | 45.0% | |
| ! | ACTCACAGCTGATTTCTCAC+TGG | - | chr1.4:80372031-80372050 | None:intergenic | 45.0% |
| ! | GAAGCAAATCACCTCTGAGA+TGG | + | chr1.4:80373800-80373819 | MS.gene26900:CDS | 45.0% |
| ! | GAGCTTTAACCAAAGCTCTG+AGG | - | chr1.4:80371491-80371510 | None:intergenic | 45.0% |
| ! | TTTTCGTCCTTCCATCTCAG+AGG | - | chr1.4:80373814-80373833 | None:intergenic | 45.0% |
| !! | AGTTAGCCTGTACCCCTTTT+GGG | - | chr1.4:80373748-80373767 | None:intergenic | 45.0% |
| !! | ATGTGCTGCTGTTTCTGCAT+TGG | - | chr1.4:80373853-80373872 | None:intergenic | 45.0% |
| !! | CAAATCACCTCTGAGATGGA+AGG | + | chr1.4:80373804-80373823 | MS.gene26900:CDS | 45.0% |
| !! | TAGTTAGCCTGTACCCCTTT+TGG | - | chr1.4:80373749-80373768 | None:intergenic | 45.0% |
| AAACTCGAACTGCAGGAGCA+AGG | - | chr1.4:80372498-80372517 | None:intergenic | 50.0% | |
| AACTCGAACTGCAGGAGCAA+GGG | - | chr1.4:80372497-80372516 | None:intergenic | 50.0% | |
| ACACTGAGGTCGCATGAATG+TGG | - | chr1.4:80372186-80372205 | None:intergenic | 50.0% | |
| CCAGCTGATTGCACTTCTCT+GGG | + | chr1.4:80372420-80372439 | MS.gene26900:CDS | 50.0% | |
| CCTGAGAGATAGCAGCAAGA+GGG | - | chr1.4:80374204-80374223 | None:intergenic | 50.0% | |
| CGGCAAGGGTGAAGTCATTT+AGG | - | chr1.4:80373454-80373473 | None:intergenic | 50.0% | |
| CTGAGAGATAGCAGCAAGAG+GGG | - | chr1.4:80374203-80374222 | None:intergenic | 50.0% | |
| GATAGGTAAGCATGCTTGCG+CGG | - | chr1.4:80373474-80373493 | None:intergenic | 50.0% | |
| GGGTACAGGCTAACTAAGCA+GGG | + | chr1.4:80373753-80373772 | MS.gene26900:CDS | 50.0% | |
| GGTCCACTCAGTGAAATGCA+TGG | - | chr1.4:80371648-80371667 | None:intergenic | 50.0% | |
| GTTACTCGTTCCTTTGACCC+TGG | - | chr1.4:80373432-80373451 | None:intergenic | 50.0% | |
| GTTTACTCAGGCACAGTTGC+TGG | + | chr1.4:80373218-80373237 | MS.gene26900:CDS | 50.0% | |
| TCCAGCTGATTGCACTTCTC+TGG | + | chr1.4:80372419-80372438 | MS.gene26900:CDS | 50.0% | |
| !! | GATGATGGAATCGATGCACC+TGG | + | chr1.4:80371465-80371484 | MS.gene26900:CDS | 50.0% |
| !! | TTAACCAAAGCTCTGAGGCC+AGG | - | chr1.4:80371486-80371505 | None:intergenic | 50.0% |
| !!! | CCTTCGTCCGGGTTTTAACT+CGG | - | chr1.4:80373124-80373143 | None:intergenic | 50.0% |
| !!! | CTTCGTCCGGGTTTTAACTC+GGG | - | chr1.4:80373123-80373142 | None:intergenic | 50.0% |
| CCCTCTTGCTGCTATCTCTC+AGG | + | chr1.4:80374201-80374220 | MS.gene26900:CDS | 55.0% | |
| CCGAGTTAAAACCCGGACGA+AGG | + | chr1.4:80373121-80373140 | MS.gene26900:intron | 55.0% | |
| GAACTGCAGGAGCAAGGGAA+GGG | - | chr1.4:80372492-80372511 | None:intergenic | 55.0% | |
| GCCTGAGAGATAGCAGCAAG+AGG | - | chr1.4:80374205-80374224 | None:intergenic | 55.0% | |
| GGGGTACAGGCTAACTAAGC+AGG | + | chr1.4:80373752-80373771 | MS.gene26900:intron | 55.0% | |
| TAAGCATGCTTGCGCGGCAA+GGG | - | chr1.4:80373468-80373487 | None:intergenic | 55.0% | |
| TGCTGCTATCTCTCAGGCAG+AGG | + | chr1.4:80374207-80374226 | MS.gene26900:CDS | 55.0% | |
| ! | ACGAATCAGGGGCGCAGATT+TGG | - | chr1.4:80371539-80371558 | None:intergenic | 55.0% |
| ! | CCCAGAGAAGTGCAATCAGC+TGG | - | chr1.4:80372423-80372442 | None:intergenic | 55.0% |
| ! | GTGTCTCCCAAAAGGGGTAC+AGG | + | chr1.4:80373739-80373758 | MS.gene26900:intron | 55.0% |
| CACAGTTGCTGGAGCTCGAG+AGG | + | chr1.4:80373229-80373248 | MS.gene26900:CDS | 60.0% | |
| CGAACTGCAGGAGCAAGGGA+AGG | - | chr1.4:80372493-80372512 | None:intergenic | 60.0% | |
| GTAAGCATGCTTGCGCGGCA+AGG | - | chr1.4:80373469-80373488 | None:intergenic | 60.0% | |
| TGCACCTGGCCTCAGAGCTT+TGG | + | chr1.4:80371479-80371498 | MS.gene26900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 80371420 | 80374300 | 80371420 | ID=MS.gene26900 |
| chr1.4 | mRNA | 80371420 | 80374300 | 80371420 | ID=MS.gene26900.t1;Parent=MS.gene26900 |
| chr1.4 | exon | 80371420 | 80371556 | 80371420 | ID=MS.gene26900.t1.exon1;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80371420 | 80371556 | 80371420 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| chr1.4 | exon | 80372032 | 80372126 | 80372032 | ID=MS.gene26900.t1.exon2;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80372032 | 80372126 | 80372032 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| chr1.4 | exon | 80372415 | 80372479 | 80372415 | ID=MS.gene26900.t1.exon3;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80372415 | 80372479 | 80372415 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| chr1.4 | exon | 80372829 | 80372872 | 80372829 | ID=MS.gene26900.t1.exon4;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80372829 | 80372872 | 80372829 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| chr1.4 | exon | 80373217 | 80373294 | 80373217 | ID=MS.gene26900.t1.exon5;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80373217 | 80373294 | 80373217 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| chr1.4 | exon | 80373433 | 80373586 | 80373433 | ID=MS.gene26900.t1.exon6;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80373433 | 80373586 | 80373433 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| chr1.4 | exon | 80373753 | 80373926 | 80373753 | ID=MS.gene26900.t1.exon7;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80373753 | 80373926 | 80373753 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| chr1.4 | exon | 80374044 | 80374106 | 80374044 | ID=MS.gene26900.t1.exon8;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80374044 | 80374106 | 80374044 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| chr1.4 | exon | 80374190 | 80374300 | 80374190 | ID=MS.gene26900.t1.exon9;Parent=MS.gene26900.t1 |
| chr1.4 | CDS | 80374190 | 80374300 | 80374190 | ID=cds.MS.gene26900.t1;Parent=MS.gene26900.t1 |
| Gene Sequence |
| Protein sequence |
