Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26914.t1 | XP_013466038.1 | 98.1 | 524 | 10 | 0 | 1 | 524 | 1 | 524 | 3.10E-299 | 1036.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26914.t1 | K4BV52 | 65.1 | 538 | 170 | 3 | 1 | 524 | 1 | 534 | 2.5e-204 | 713.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26914.t1 | Q7X9B4 | 98.1 | 524 | 10 | 0 | 1 | 524 | 1 | 524 | 2.2e-299 | 1036.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050669 | MS.gene26914 | 0.803823 | 2.90E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene26914 | 0.874305 | 7.49E-68 | -1.69E-46 |
| MS.gene053620 | MS.gene26914 | 0.836364 | 9.77E-57 | -1.69E-46 |
| MS.gene054178 | MS.gene26914 | 0.825383 | 4.83E-54 | -1.69E-46 |
| MS.gene054617 | MS.gene26914 | 0.826275 | 2.97E-54 | -1.69E-46 |
| MS.gene054892 | MS.gene26914 | 0.807401 | 5.15E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene26914 | 0.803031 | 4.23E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene26914 | 0.803864 | 2.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26914.t1 | MTR_1g021652 | 98.092 | 524 | 10 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1058 |
| MS.gene26914.t1 | MTR_3g111530 | 71.915 | 470 | 130 | 2 | 57 | 524 | 90 | 559 | 0.0 | 707 |
| MS.gene26914.t1 | MTR_4g068550 | 48.125 | 480 | 243 | 4 | 48 | 523 | 2 | 479 | 2.28e-167 | 483 |
| MS.gene26914.t1 | MTR_1g034320 | 50.418 | 478 | 229 | 6 | 52 | 523 | 8 | 483 | 1.02e-166 | 481 |
| MS.gene26914.t1 | MTR_1g034330 | 47.228 | 487 | 249 | 6 | 41 | 522 | 3 | 486 | 3.26e-162 | 470 |
| MS.gene26914.t1 | MTR_2g087890 | 39.787 | 470 | 269 | 5 | 56 | 522 | 21 | 479 | 2.41e-120 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26914.t1 | AT5G42650 | 60.077 | 521 | 204 | 3 | 4 | 524 | 2 | 518 | 0.0 | 649 |
| MS.gene26914.t1 | AT4G15440 | 40.489 | 368 | 215 | 4 | 137 | 501 | 4 | 370 | 3.11e-93 | 289 |
Find 118 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGATTTCAAGACTTT+TGG | 0.223131 | 1.3:+3365683 | MS.gene26914:CDS |
| CATGACGACTACGTGATTTA+AGG | 0.223634 | 1.3:-3364774 | None:intergenic |
| TTCTTGAGCTGTTCATGTTT+TGG | 0.234640 | 1.3:-3364736 | None:intergenic |
| CCGATCCATTTCATCAAATT+AGG | 0.234831 | 1.3:-3365243 | None:intergenic |
| CCACCGGTTCCATTACAATT+TGG | 0.257621 | 1.3:+3365408 | MS.gene26914:CDS |
| TACAATTTGGAAGAGCAAAA+AGG | 0.266309 | 1.3:+3365421 | MS.gene26914:CDS |
| CGTAAAATCCCTGGTGACTA+TGG | 0.271642 | 1.3:+3364415 | MS.gene26914:CDS |
| TCTGAAACTGAGGATCTTAT+AGG | 0.272458 | 1.3:-3364337 | None:intergenic |
| ACAGTTGGAGATTGAGATTC+TGG | 0.272740 | 1.3:-3365627 | None:intergenic |
| GTGATTGAAAATCATGAAAA+TGG | 0.293983 | 1.3:+3365450 | MS.gene26914:CDS |
| GAGAGTCAACTTGCTGAAAA+TGG | 0.300576 | 1.3:+3364844 | MS.gene26914:CDS |
| AAACATGTGCTTTGGTCTAA+TGG | 0.336037 | 1.3:+3365603 | MS.gene26914:CDS |
| CAAGTTGGAAATTCACCTTT+AGG | 0.336124 | 1.3:+3365744 | MS.gene26914:CDS |
| AAGAAAGGTGAATTGTTGTT+AGG | 0.339578 | 1.3:+3365483 | MS.gene26914:CDS |
| ATAGTCTAAACGGTCTTTGT+AGG | 0.357496 | 1.3:-3364455 | None:intergenic |
| GTTAGGTCCAGTACTGAAAC+TGG | 0.365669 | 1.3:+3365002 | MS.gene26914:CDS |
| TCTCGAGGAAGCAGAGCGTT+TGG | 0.368847 | 1.3:+3365140 | MS.gene26914:CDS |
| TCTTTCTTAATGAGCCGAAA+TGG | 0.371372 | 1.3:-3365072 | None:intergenic |
| AGTCCAAGTTCGGTGTCAAC+AGG | 0.376332 | 1.3:-3364940 | None:intergenic |
| AACGTAGTTGTACTCCTTGA+TGG | 0.385691 | 1.3:+3364586 | MS.gene26914:CDS |
| TTTGCTCTTCCAAATTGTAA+TGG | 0.388470 | 1.3:-3365417 | None:intergenic |
| TCAAGGAGTACAACTACGTT+AGG | 0.399517 | 1.3:-3364583 | None:intergenic |
| TTCTTGAACCGTGCTTTGTT+CGG | 0.407853 | 1.3:+3364910 | MS.gene26914:CDS |
| CTCGAGGAAGCAGAGCGTTT+GGG | 0.415267 | 1.3:+3365141 | MS.gene26914:CDS |
| CTATAACATGACTGAAACTC+TGG | 0.418932 | 1.3:-3364802 | None:intergenic |
| AACCCTGTTGACACCGAACT+TGG | 0.419339 | 1.3:+3364937 | MS.gene26914:CDS |
| TTAGGATCTTTAGTAGCAAA+AGG | 0.430684 | 1.3:-3365513 | None:intergenic |
| AATTGTTGAAACATGTGCTT+TGG | 0.436664 | 1.3:+3365595 | MS.gene26914:CDS |
| TTCGATGCGTCGAAGAGGAC+GGG | 0.442058 | 1.3:-3364619 | None:intergenic |
| CTAATTTGATGAAATGGATC+GGG | 0.442169 | 1.3:+3365244 | MS.gene26914:CDS |
| CTTTCTTAATGAGCCGAAAT+GGG | 0.448393 | 1.3:-3365071 | None:intergenic |
| GATAGATTTGTTGGTGATGA+AGG | 0.449657 | 1.3:+3365567 | MS.gene26914:CDS |
| ATCGGAAGCTTGGTTGTTTG+TGG | 0.457864 | 1.3:-3364391 | None:intergenic |
| TGGACCGTCAAGTCCAAGTT+CGG | 0.457945 | 1.3:-3364950 | None:intergenic |
| TTTGTTGCAGATAGATTTGT+TGG | 0.462474 | 1.3:+3365558 | MS.gene26914:CDS |
| GGTTGTAGAAATAGTCTAAA+CGG | 0.463350 | 1.3:-3364465 | None:intergenic |
| TGCTGGCGGGGAGATTACTA+TGG | 0.465831 | 1.3:+3365326 | MS.gene26914:CDS |
| AAATTAGCGACGGAAATTAG+AGG | 0.465886 | 1.3:+3365291 | MS.gene26914:CDS |
| GGAGATTACTATGGCGGCCA+TGG | 0.473614 | 1.3:+3365335 | MS.gene26914:CDS |
| GACACCGAACTTGGACTTGA+CGG | 0.474937 | 1.3:+3364946 | MS.gene26914:CDS |
| CTTCCAAATTGTAATGGAAC+CGG | 0.475194 | 1.3:-3365411 | None:intergenic |
| CCACCAGTGAGTTCTGTAGA+AGG | 0.484397 | 1.3:-3364679 | None:intergenic |
| TCTTTGTAGGGTTGGATGAA+AGG | 0.484515 | 1.3:-3364442 | None:intergenic |
| GATTCCTTTGAGATTCAAGT+TGG | 0.484812 | 1.3:+3365729 | MS.gene26914:CDS |
| TCGTGATAAGGTGGTGGAAG+AGG | 0.486006 | 1.3:-3364293 | None:intergenic |
| CTAAACGGTCTTTGTAGGGT+TGG | 0.489158 | 1.3:-3364450 | None:intergenic |
| GCGTTTGGGTGTTTCAAAAG+AGG | 0.495066 | 1.3:+3365155 | MS.gene26914:CDS |
| GGTGGAGGAACGTCGTGATA+AGG | 0.495151 | 1.3:-3364305 | None:intergenic |
| GAATCTCAATCTCCAACTGT+TGG | 0.495729 | 1.3:+3365630 | MS.gene26914:CDS |
| CTTTGTAGGGTTGGATGAAA+GGG | 0.497717 | 1.3:-3364441 | None:intergenic |
| CCTAATTTGATGAAATGGAT+CGG | 0.498399 | 1.3:+3365243 | MS.gene26914:CDS |
| AATCTCAATCTCCAACTGTT+GGG | 0.502505 | 1.3:+3365631 | MS.gene26914:CDS |
| AGAGGAGCAATTAGATCTGC+TGG | 0.504448 | 1.3:+3365309 | MS.gene26914:CDS |
| TTCCGCACTAACGTTCCTCC+TGG | 0.506823 | 1.3:+3364541 | MS.gene26914:CDS |
| GGTAGGCCCAGTTTCAGTAC+TGG | 0.509236 | 1.3:-3365009 | None:intergenic |
| GGTTGTTTGTGGTTGAGAGA+TGG | 0.510021 | 1.3:-3364380 | None:intergenic |
| CATTGTTTATTCCCAACAGT+TGG | 0.511671 | 1.3:-3365642 | None:intergenic |
| TTAGACTATTTCTACAACCA+AGG | 0.515498 | 1.3:+3364469 | MS.gene26914:CDS |
| GAATATGCCGTTGATGAAAT+CGG | 0.515909 | 1.3:+3365359 | MS.gene26914:CDS |
| ACTGGGCCTACCGAAGTTTG+TGG | 0.518134 | 1.3:+3365020 | MS.gene26914:CDS |
| TAGTCTAAACGGTCTTTGTA+GGG | 0.523147 | 1.3:-3364454 | None:intergenic |
| GGATCTTATAGGTGGAAGAA+AGG | 0.524920 | 1.3:-3364326 | None:intergenic |
| GAGCAATTAGATCTGCTGGC+GGG | 0.527113 | 1.3:+3365313 | MS.gene26914:CDS |
| TGAAGTATTCATCACGACCT+TGG | 0.527248 | 1.3:-3364486 | None:intergenic |
| GAGATGGAGACTTGGAAAGG+TGG | 0.530805 | 1.3:-3364364 | None:intergenic |
| GATAAAACCGATGTCTTCAC+AGG | 0.538925 | 1.3:+3364646 | MS.gene26914:CDS |
| AGCAATTAGATCTGCTGGCG+GGG | 0.539011 | 1.3:+3365314 | MS.gene26914:CDS |
| CAAGGAGTACAACTACGTTA+GGG | 0.540708 | 1.3:-3364582 | None:intergenic |
| AAAGGGATGCCATAGTCACC+AGG | 0.542937 | 1.3:-3364424 | None:intergenic |
| GTGGTTGAGAGATGGAGACT+TGG | 0.545394 | 1.3:-3364372 | None:intergenic |
| ATTTCCAACTTGAATCTCAA+AGG | 0.547715 | 1.3:-3365733 | None:intergenic |
| CGTGATAAGGTGGTGGAAGA+GGG | 0.548060 | 1.3:-3364292 | None:intergenic |
| TGCTGATAATAATGATCAAG+CGG | 0.549573 | 1.3:+3364879 | MS.gene26914:CDS |
| CTTCCGATCCGTAAAATCCC+TGG | 0.555994 | 1.3:+3364406 | MS.gene26914:CDS |
| TGTTTGAGGAGATTAGGAGA+AGG | 0.557408 | 1.3:-3364259 | None:intergenic |
| CTTCGATGCGTCGAAGAGGA+CGG | 0.557973 | 1.3:-3364620 | None:intergenic |
| TGATCTCTTTAGTGAGGTGA+GGG | 0.559767 | 1.3:-3365778 | None:intergenic |
| TCTTATAGGTGGAAGAAAGG+TGG | 0.561423 | 1.3:-3364323 | None:intergenic |
| AGGGTAATAGCAGGACCTAA+AGG | 0.563300 | 1.3:-3365759 | None:intergenic |
| TTGATCTCTTTAGTGAGGTG+AGG | 0.564316 | 1.3:-3365779 | None:intergenic |
| AGAAGGAGTTGAAAGAGTAG+AGG | 0.564504 | 1.3:-3364242 | None:intergenic |
| CATCAACGGCATATTCTCCA+TGG | 0.564805 | 1.3:-3365352 | None:intergenic |
| TAGTGCGGAAGATGGTTGAC+TGG | 0.567027 | 1.3:-3364528 | None:intergenic |
| CGATCTTCGATGCGTCGAAG+AGG | 0.569780 | 1.3:-3364624 | None:intergenic |
| AGGAACGTTAGTGCGGAAGA+TGG | 0.576272 | 1.3:-3364536 | None:intergenic |
| GGATCGGGCGCGGTGGAGTG+AGG | 0.582337 | 1.3:+3365259 | MS.gene26914:CDS |
| ATAGAATCTTCCACAAACTT+CGG | 0.583947 | 1.3:-3365030 | None:intergenic |
| TCGATGCGTCGAAGAGGACG+GGG | 0.588579 | 1.3:-3364618 | None:intergenic |
| TTTGGGTGTTTCAAAAGAGG+AGG | 0.589260 | 1.3:+3365158 | MS.gene26914:CDS |
| TATACCACCGATTTCATCAA+CGG | 0.592868 | 1.3:-3365366 | None:intergenic |
| CCAAATTGTAATGGAACCGG+TGG | 0.594525 | 1.3:-3365408 | None:intergenic |
| GTTGGGAATAAACAATGTGC+TGG | 0.598250 | 1.3:+3365648 | MS.gene26914:CDS |
| GGAACGTCGTGATAAGGTGG+TGG | 0.600776 | 1.3:-3364299 | None:intergenic |
| TATAGGTGGAAGAAAGGTGG+AGG | 0.604481 | 1.3:-3364320 | None:intergenic |
| TTCCTCGGGATTTGCTCTCG+AGG | 0.607265 | 1.3:+3365125 | MS.gene26914:CDS |
| AGTGAGGTGAGGGTAATAGC+AGG | 0.615642 | 1.3:-3365768 | None:intergenic |
| AATCTTCCACAAACTTCGGT+AGG | 0.620192 | 1.3:-3365026 | None:intergenic |
| GTCCAAGTTCGGTGTCAACA+GGG | 0.625604 | 1.3:-3364939 | None:intergenic |
| ATGAAATGGATCGGGCGCGG+TGG | 0.626352 | 1.3:+3365252 | MS.gene26914:CDS |
| GGAGGAACGTCGTGATAAGG+TGG | 0.627902 | 1.3:-3364302 | None:intergenic |
| GACCAGGAGGAACGTTAGTG+CGG | 0.628753 | 1.3:-3364543 | None:intergenic |
| GGTTAACACCGAACAAAGCA+CGG | 0.629486 | 1.3:-3364918 | None:intergenic |
| GAAACTGAGGATCTTATAGG+TGG | 0.630333 | 1.3:-3364334 | None:intergenic |
| GAAGCTTGATCTCTTTAGTG+AGG | 0.631938 | 1.3:-3365784 | None:intergenic |
| TTGATGAAATGGATCGGGCG+CGG | 0.633244 | 1.3:+3365249 | MS.gene26914:CDS |
| ACACCTTCTACAGAACTCAC+TGG | 0.635223 | 1.3:+3364676 | MS.gene26914:CDS |
| TTAGGTCCAGTACTGAAACT+GGG | 0.653363 | 1.3:+3365003 | MS.gene26914:CDS |
| GTTGCATACAAAATTAGCGA+CGG | 0.661214 | 1.3:+3365281 | MS.gene26914:CDS |
| TGGCGGGGAGATTACTATGG+CGG | 0.671730 | 1.3:+3365329 | MS.gene26914:CDS |
| TGAGAGATGGAGACTTGGAA+AGG | 0.672847 | 1.3:-3364367 | None:intergenic |
| GGAGCAATTAGATCTGCTGG+CGG | 0.676095 | 1.3:+3365312 | MS.gene26914:CDS |
| CAAAAGTCTTGAAATCAATG+TGG | 0.688379 | 1.3:-3365682 | None:intergenic |
| AAGGGATGCCATAGTCACCA+GGG | 0.700881 | 1.3:-3364423 | None:intergenic |
| TTCCTCGAGAGCAAATCCCG+AGG | 0.708927 | 1.3:-3365127 | None:intergenic |
| CCTTCTACAGAACTCACTGG+TGG | 0.709735 | 1.3:+3364679 | MS.gene26914:CDS |
| TATGCCGTTGATGAAATCGG+TGG | 0.719714 | 1.3:+3365362 | MS.gene26914:CDS |
| GTATGTACCTGTGAAGACAT+CGG | 0.723042 | 1.3:-3364653 | None:intergenic |
| TGAGCTATGAAAGGACCAGG+AGG | 0.748813 | 1.3:-3364556 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCATGAAAATGGTTTTT+TGG | + | chr1.3:3365458-3365477 | MS.gene26914:CDS | 20.0% |
| !!! | TTTTTCCTAATTTGATGAAA+TGG | + | chr1.3:3365238-3365257 | MS.gene26914:CDS | 20.0% |
| ! | GTGATTGAAAATCATGAAAA+TGG | + | chr1.3:3365450-3365469 | MS.gene26914:CDS | 25.0% |
| !!! | AAATGGGTTTTATTTCAGTT+AGG | + | chr1.3:3364985-3365004 | MS.gene26914:CDS | 25.0% |
| !!! | AATGGTTTTTTGGTTAAGAA+AGG | + | chr1.3:3365468-3365487 | MS.gene26914:CDS | 25.0% |
| !!! | TAGAGAGTTTTTTAATGCTT+TGG | + | chr1.3:3364822-3364841 | MS.gene26914:CDS | 25.0% |
| AATTGTTGAAACATGTGCTT+TGG | + | chr1.3:3365595-3365614 | MS.gene26914:CDS | 30.0% | |
| ACAATTTGGAAGAGCAAAAA+GGG | + | chr1.3:3365422-3365441 | MS.gene26914:CDS | 30.0% | |
| ATAGAATCTTCCACAAACTT+CGG | - | chr1.3:3365033-3365052 | None:intergenic | 30.0% | |
| ATTTCCAACTTGAATCTCAA+AGG | - | chr1.3:3365736-3365755 | None:intergenic | 30.0% | |
| CAAAAGTCTTGAAATCAATG+TGG | - | chr1.3:3365685-3365704 | None:intergenic | 30.0% | |
| CCTAATTTGATGAAATGGAT+CGG | + | chr1.3:3365243-3365262 | MS.gene26914:CDS | 30.0% | |
| CTAATTTGATGAAATGGATC+GGG | + | chr1.3:3365244-3365263 | MS.gene26914:CDS | 30.0% | |
| GGTTGTAGAAATAGTCTAAA+CGG | - | chr1.3:3364468-3364487 | None:intergenic | 30.0% | |
| TACAATTTGGAAGAGCAAAA+AGG | + | chr1.3:3365421-3365440 | MS.gene26914:CDS | 30.0% | |
| TCCAAAAATGGTTCAGAAAT+GGG | + | chr1.3:3364969-3364988 | MS.gene26914:CDS | 30.0% | |
| TCTGCTCTATCAAAAATCTT+AGG | - | chr1.3:3365534-3365553 | None:intergenic | 30.0% | |
| TGCTGATAATAATGATCAAG+CGG | + | chr1.3:3364879-3364898 | MS.gene26914:CDS | 30.0% | |
| TTAGGATCTTTAGTAGCAAA+AGG | - | chr1.3:3365516-3365535 | None:intergenic | 30.0% | |
| TTTGCTCTTCCAAATTGTAA+TGG | - | chr1.3:3365420-3365439 | None:intergenic | 30.0% | |
| TTTGTTGCAGATAGATTTGT+TGG | + | chr1.3:3365558-3365577 | MS.gene26914:CDS | 30.0% | |
| ! | AAGAAAGGTGAATTGTTGTT+AGG | + | chr1.3:3365483-3365502 | MS.gene26914:CDS | 30.0% |
| ! | ATAATTTTCGTCTCCCATTT+CGG | + | chr1.3:3365058-3365077 | MS.gene26914:CDS | 30.0% |
| ! | TAAGATTTTTGATAGAGCAG+AGG | + | chr1.3:3365533-3365552 | MS.gene26914:CDS | 30.0% |
| ! | TGATTTCTTTTATGCTTCCT+CGG | + | chr1.3:3365110-3365129 | MS.gene26914:CDS | 30.0% |
| !! | TGGTTGTTGAACTTTTTCTT+AGG | + | chr1.3:3365703-3365722 | MS.gene26914:CDS | 30.0% |
| !! | TTAGACTATTTCTACAACCA+AGG | + | chr1.3:3364469-3364488 | MS.gene26914:CDS | 30.0% |
| !!! | CACATTGATTTCAAGACTTT+TGG | + | chr1.3:3365683-3365702 | MS.gene26914:CDS | 30.0% |
| AAACATGTGCTTTGGTCTAA+TGG | + | chr1.3:3365603-3365622 | MS.gene26914:CDS | 35.0% | |
| AAATTAGCGACGGAAATTAG+AGG | + | chr1.3:3365291-3365310 | MS.gene26914:CDS | 35.0% | |
| AATCTCAATCTCCAACTGTT+GGG | + | chr1.3:3365631-3365650 | MS.gene26914:CDS | 35.0% | |
| ATAGTCTAAACGGTCTTTGT+AGG | - | chr1.3:3364458-3364477 | None:intergenic | 35.0% | |
| CATTGTTTATTCCCAACAGT+TGG | - | chr1.3:3365645-3365664 | None:intergenic | 35.0% | |
| CCGATCCATTTCATCAAATT+AGG | - | chr1.3:3365246-3365265 | None:intergenic | 35.0% | |
| CTATAACATGACTGAAACTC+TGG | - | chr1.3:3364805-3364824 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGCCGAAAT+GGG | - | chr1.3:3365074-3365093 | None:intergenic | 35.0% | |
| GTCCAAAAATGGTTCAGAAA+TGG | + | chr1.3:3364968-3364987 | MS.gene26914:CDS | 35.0% | |
| GTTGCATACAAAATTAGCGA+CGG | + | chr1.3:3365281-3365300 | MS.gene26914:CDS | 35.0% | |
| TAGTCTAAACGGTCTTTGTA+GGG | - | chr1.3:3364457-3364476 | None:intergenic | 35.0% | |
| TCTTTCTTAATGAGCCGAAA+TGG | - | chr1.3:3365075-3365094 | None:intergenic | 35.0% | |
| ! | ACCCATTTCTGAACCATTTT+TGG | - | chr1.3:3364973-3364992 | None:intergenic | 35.0% |
| ! | AGATGGTTGACTGGTATTTT+TGG | - | chr1.3:3364522-3364541 | None:intergenic | 35.0% |
| ! | CAAGTTGGAAATTCACCTTT+AGG | + | chr1.3:3365744-3365763 | MS.gene26914:CDS | 35.0% |
| ! | CTTCCAAATTGTAATGGAAC+CGG | - | chr1.3:3365414-3365433 | None:intergenic | 35.0% |
| ! | GAATATGCCGTTGATGAAAT+CGG | + | chr1.3:3365359-3365378 | MS.gene26914:CDS | 35.0% |
| ! | GATTTCTTTTATGCTTCCTC+GGG | + | chr1.3:3365111-3365130 | MS.gene26914:CDS | 35.0% |
| ! | TCTGAAACTGAGGATCTTAT+AGG | - | chr1.3:3364340-3364359 | None:intergenic | 35.0% |
| ! | TTCTTGAGCTGTTCATGTTT+TGG | - | chr1.3:3364739-3364758 | None:intergenic | 35.0% |
| !! | GATAGATTTGTTGGTGATGA+AGG | + | chr1.3:3365567-3365586 | MS.gene26914:CDS | 35.0% |
| !! | GATTCCTTTGAGATTCAAGT+TGG | + | chr1.3:3365729-3365748 | MS.gene26914:CDS | 35.0% |
| !! | TATACCACCGATTTCATCAA+CGG | - | chr1.3:3365369-3365388 | None:intergenic | 35.0% |
| !!! | ACGTGTTTTAATTCGTTTGG+CGG | + | chr1.3:3365204-3365223 | MS.gene26914:CDS | 35.0% |
| !!! | GCAACGTGTTTTAATTCGTT+TGG | + | chr1.3:3365201-3365220 | MS.gene26914:CDS | 35.0% |
| !!! | TTAGGGTTTTGAGCTATGAA+AGG | - | chr1.3:3364568-3364587 | None:intergenic | 35.0% |
| !!! | TTTTGGTGTTTGAGGAGATT+AGG | - | chr1.3:3364268-3364287 | None:intergenic | 35.0% |
| AACGTAGTTGTACTCCTTGA+TGG | + | chr1.3:3364586-3364605 | MS.gene26914:CDS | 40.0% | |
| AATCTTCCACAAACTTCGGT+AGG | - | chr1.3:3365029-3365048 | None:intergenic | 40.0% | |
| ACAGTTGGAGATTGAGATTC+TGG | - | chr1.3:3365630-3365649 | None:intergenic | 40.0% | |
| AGAAGGAGTTGAAAGAGTAG+AGG | - | chr1.3:3364245-3364264 | None:intergenic | 40.0% | |
| CATGACGACTACGTGATTTA+AGG | - | chr1.3:3364777-3364796 | None:intergenic | 40.0% | |
| CTTTGTAGGGTTGGATGAAA+GGG | - | chr1.3:3364444-3364463 | None:intergenic | 40.0% | |
| GAAACTGAGGATCTTATAGG+TGG | - | chr1.3:3364337-3364356 | None:intergenic | 40.0% | |
| GAAGCTTGATCTCTTTAGTG+AGG | - | chr1.3:3365787-3365806 | None:intergenic | 40.0% | |
| GAATCTCAATCTCCAACTGT+TGG | + | chr1.3:3365630-3365649 | MS.gene26914:CDS | 40.0% | |
| GATAAAACCGATGTCTTCAC+AGG | + | chr1.3:3364646-3364665 | MS.gene26914:CDS | 40.0% | |
| GGATCTTATAGGTGGAAGAA+AGG | - | chr1.3:3364329-3364348 | None:intergenic | 40.0% | |
| GTATGTACCTGTGAAGACAT+CGG | - | chr1.3:3364656-3364675 | None:intergenic | 40.0% | |
| GTTGGGAATAAACAATGTGC+TGG | + | chr1.3:3365648-3365667 | MS.gene26914:CDS | 40.0% | |
| TCTTATAGGTGGAAGAAAGG+TGG | - | chr1.3:3364326-3364345 | None:intergenic | 40.0% | |
| TCTTTGTAGGGTTGGATGAA+AGG | - | chr1.3:3364445-3364464 | None:intergenic | 40.0% | |
| TGATCTCTTTAGTGAGGTGA+GGG | - | chr1.3:3365781-3365800 | None:intergenic | 40.0% | |
| TGTTTGAGGAGATTAGGAGA+AGG | - | chr1.3:3364262-3364281 | None:intergenic | 40.0% | |
| TTGATCTCTTTAGTGAGGTG+AGG | - | chr1.3:3365782-3365801 | None:intergenic | 40.0% | |
| TTTGGGTGTTTCAAAAGAGG+AGG | + | chr1.3:3365158-3365177 | MS.gene26914:CDS | 40.0% | |
| ! | CAAGGAGTACAACTACGTTA+GGG | - | chr1.3:3364585-3364604 | None:intergenic | 40.0% |
| ! | CATAGTCACCAGGGATTTTA+CGG | - | chr1.3:3364417-3364436 | None:intergenic | 40.0% |
| ! | TCAAGGAGTACAACTACGTT+AGG | - | chr1.3:3364586-3364605 | None:intergenic | 40.0% |
| ! | TGAAGTATTCATCACGACCT+TGG | - | chr1.3:3364489-3364508 | None:intergenic | 40.0% |
| ! | TTAGGTCCAGTACTGAAACT+GGG | + | chr1.3:3365003-3365022 | MS.gene26914:CDS | 40.0% |
| ! | TTCTTGAACCGTGCTTTGTT+CGG | + | chr1.3:3364910-3364929 | MS.gene26914:CDS | 40.0% |
| ! | TTTTGAGCTATGAAAGGACC+AGG | - | chr1.3:3364562-3364581 | None:intergenic | 40.0% |
| !! | AGCTTTTCGTATTGATCCAC+CGG | + | chr1.3:3365392-3365411 | MS.gene26914:CDS | 40.0% |
| !! | GAGAGTCAACTTGCTGAAAA+TGG | + | chr1.3:3364844-3364863 | MS.gene26914:CDS | 40.0% |
| !!! | AGGGTCTTTTTTGGTGTTTG+AGG | - | chr1.3:3364276-3364295 | None:intergenic | 40.0% |
| !!! | AGGTGGTTTTTCTGAAACTG+AGG | - | chr1.3:3364350-3364369 | None:intergenic | 40.0% |
| !!! | CGTGTTTTAATTCGTTTGGC+GGG | + | chr1.3:3365205-3365224 | MS.gene26914:CDS | 40.0% |
| !!! | GAGCTGTTCATGTTTTGGTT+CGG | - | chr1.3:3364734-3364753 | None:intergenic | 40.0% |
| !!! | TGTTCATGTTTTGGTTCGGA+GGG | - | chr1.3:3364730-3364749 | None:intergenic | 40.0% |
| ACACCTTCTACAGAACTCAC+TGG | + | chr1.3:3364676-3364695 | MS.gene26914:CDS | 45.0% | |
| AGAGGAGCAATTAGATCTGC+TGG | + | chr1.3:3365309-3365328 | MS.gene26914:CDS | 45.0% | |
| AGGGTAATAGCAGGACCTAA+AGG | - | chr1.3:3365762-3365781 | None:intergenic | 45.0% | |
| ATCGGAAGCTTGGTTGTTTG+TGG | - | chr1.3:3364394-3364413 | None:intergenic | 45.0% | |
| CATCAACGGCATATTCTCCA+TGG | - | chr1.3:3365355-3365374 | None:intergenic | 45.0% | |
| CGTAAAATCCCTGGTGACTA+TGG | + | chr1.3:3364415-3364434 | MS.gene26914:CDS | 45.0% | |
| CTAAACGGTCTTTGTAGGGT+TGG | - | chr1.3:3364453-3364472 | None:intergenic | 45.0% | |
| GCGTTTGGGTGTTTCAAAAG+AGG | + | chr1.3:3365155-3365174 | MS.gene26914:CDS | 45.0% | |
| GGTTAACACCGAACAAAGCA+CGG | - | chr1.3:3364921-3364940 | None:intergenic | 45.0% | |
| GGTTGTTTGTGGTTGAGAGA+TGG | - | chr1.3:3364383-3364402 | None:intergenic | 45.0% | |
| TATAGGTGGAAGAAAGGTGG+AGG | - | chr1.3:3364323-3364342 | None:intergenic | 45.0% | |
| TGAGAGATGGAGACTTGGAA+AGG | - | chr1.3:3364370-3364389 | None:intergenic | 45.0% | |
| TGGAAGAGCAAAAAGGGACA+TGG | + | chr1.3:3365428-3365447 | MS.gene26914:CDS | 45.0% | |
| TGGACTTGACGGTCCAAAAA+TGG | + | chr1.3:3364957-3364976 | MS.gene26914:CDS | 45.0% | |
| ! | CCAAATTGTAATGGAACCGG+TGG | - | chr1.3:3365411-3365430 | None:intergenic | 45.0% |
| ! | GATTTTACGGATCGGAAGCT+TGG | - | chr1.3:3364404-3364423 | None:intergenic | 45.0% |
| ! | GTTAGGTCCAGTACTGAAAC+TGG | + | chr1.3:3365002-3365021 | MS.gene26914:CDS | 45.0% |
| ! | TATGCCGTTGATGAAATCGG+TGG | + | chr1.3:3365362-3365381 | MS.gene26914:CDS | 45.0% |
| ! | TCACCAGGGATTTTACGGAT+CGG | - | chr1.3:3364412-3364431 | None:intergenic | 45.0% |
| !! | CCACCGGTTCCATTACAATT+TGG | + | chr1.3:3365408-3365427 | MS.gene26914:CDS | 45.0% |
| !!! | CTGTTCATGTTTTGGTTCGG+AGG | - | chr1.3:3364731-3364750 | None:intergenic | 45.0% |
| !!! | TGGTGGAAGAGGGTCTTTTT+TGG | - | chr1.3:3364285-3364304 | None:intergenic | 45.0% |
| AAAGGGATGCCATAGTCACC+AGG | - | chr1.3:3364427-3364446 | None:intergenic | 50.0% | |
| AACCCTGTTGACACCGAACT+TGG | + | chr1.3:3364937-3364956 | MS.gene26914:CDS | 50.0% | |
| AAGGGATGCCATAGTCACCA+GGG | - | chr1.3:3364426-3364445 | None:intergenic | 50.0% | |
| AGCAATTAGATCTGCTGGCG+GGG | + | chr1.3:3365314-3365333 | MS.gene26914:CDS | 50.0% | |
| AGGAACGTTAGTGCGGAAGA+TGG | - | chr1.3:3364539-3364558 | None:intergenic | 50.0% | |
| AGTGAGGTGAGGGTAATAGC+AGG | - | chr1.3:3365771-3365790 | None:intergenic | 50.0% | |
| CCACCAGTGAGTTCTGTAGA+AGG | - | chr1.3:3364682-3364701 | None:intergenic | 50.0% | |
| CCTTCTACAGAACTCACTGG+TGG | + | chr1.3:3364679-3364698 | MS.gene26914:CDS | 50.0% | |
| CTTCCGATCCGTAAAATCCC+TGG | + | chr1.3:3364406-3364425 | MS.gene26914:CDS | 50.0% | |
| GACACCGAACTTGGACTTGA+CGG | + | chr1.3:3364946-3364965 | MS.gene26914:CDS | 50.0% | |
| GAGATGGAGACTTGGAAAGG+TGG | - | chr1.3:3364367-3364386 | None:intergenic | 50.0% | |
| GAGCAATTAGATCTGCTGGC+GGG | + | chr1.3:3365313-3365332 | MS.gene26914:CDS | 50.0% | |
| GGAGCAATTAGATCTGCTGG+CGG | + | chr1.3:3365312-3365331 | MS.gene26914:CDS | 50.0% | |
| GTGGTTGAGAGATGGAGACT+TGG | - | chr1.3:3364375-3364394 | None:intergenic | 50.0% | |
| TAGTGCGGAAGATGGTTGAC+TGG | - | chr1.3:3364531-3364550 | None:intergenic | 50.0% | |
| TGAGCTATGAAAGGACCAGG+AGG | - | chr1.3:3364559-3364578 | None:intergenic | 50.0% | |
| TGGACCGTCAAGTCCAAGTT+CGG | - | chr1.3:3364953-3364972 | None:intergenic | 50.0% | |
| TTGATGAAATGGATCGGGCG+CGG | + | chr1.3:3365249-3365268 | MS.gene26914:CDS | 50.0% | |
| ! | CGGGGAAGCTTTTACCATCA+AGG | - | chr1.3:3364603-3364622 | None:intergenic | 50.0% |
| !! | AGTCCAAGTTCGGTGTCAAC+AGG | - | chr1.3:3364943-3364962 | None:intergenic | 50.0% |
| !! | CGTGATAAGGTGGTGGAAGA+GGG | - | chr1.3:3364295-3364314 | None:intergenic | 50.0% |
| !! | GTCCAAGTTCGGTGTCAACA+GGG | - | chr1.3:3364942-3364961 | None:intergenic | 50.0% |
| !! | TCGTGATAAGGTGGTGGAAG+AGG | - | chr1.3:3364296-3364315 | None:intergenic | 50.0% |
| !!! | GTTTTGGTTCGGAGGGATCA+AGG | - | chr1.3:3364723-3364742 | None:intergenic | 50.0% |
| ACTGGGCCTACCGAAGTTTG+TGG | + | chr1.3:3365020-3365039 | MS.gene26914:CDS | 55.0% | |
| CGATCTTCGATGCGTCGAAG+AGG | - | chr1.3:3364627-3364646 | None:intergenic | 55.0% | |
| CTTCGATGCGTCGAAGAGGA+CGG | - | chr1.3:3364623-3364642 | None:intergenic | 55.0% | |
| GACCAGGAGGAACGTTAGTG+CGG | - | chr1.3:3364546-3364565 | None:intergenic | 55.0% | |
| GGAACGTCGTGATAAGGTGG+TGG | - | chr1.3:3364302-3364321 | None:intergenic | 55.0% | |
| GGAGATTACTATGGCGGCCA+TGG | + | chr1.3:3365335-3365354 | MS.gene26914:CDS | 55.0% | |
| GGAGGAACGTCGTGATAAGG+TGG | - | chr1.3:3364305-3364324 | None:intergenic | 55.0% | |
| GGTAGGCCCAGTTTCAGTAC+TGG | - | chr1.3:3365012-3365031 | None:intergenic | 55.0% | |
| GGTGGAGGAACGTCGTGATA+AGG | - | chr1.3:3364308-3364327 | None:intergenic | 55.0% | |
| TGCTGGCGGGGAGATTACTA+TGG | + | chr1.3:3365326-3365345 | MS.gene26914:CDS | 55.0% | |
| TGGCGGGGAGATTACTATGG+CGG | + | chr1.3:3365329-3365348 | MS.gene26914:CDS | 55.0% | |
| TTCCGCACTAACGTTCCTCC+TGG | + | chr1.3:3364541-3364560 | MS.gene26914:CDS | 55.0% | |
| TTCCTCGAGAGCAAATCCCG+AGG | - | chr1.3:3365130-3365149 | None:intergenic | 55.0% | |
| TTCGATGCGTCGAAGAGGAC+GGG | - | chr1.3:3364622-3364641 | None:intergenic | 55.0% | |
| ! | CTCGAGGAAGCAGAGCGTTT+GGG | + | chr1.3:3365141-3365160 | MS.gene26914:CDS | 55.0% |
| ! | TCTCGAGGAAGCAGAGCGTT+TGG | + | chr1.3:3365140-3365159 | MS.gene26914:CDS | 55.0% |
| ! | TTCCTCGGGATTTGCTCTCG+AGG | + | chr1.3:3365125-3365144 | MS.gene26914:CDS | 55.0% |
| ATGAAATGGATCGGGCGCGG+TGG | + | chr1.3:3365252-3365271 | MS.gene26914:CDS | 60.0% | |
| TCGATGCGTCGAAGAGGACG+GGG | - | chr1.3:3364621-3364640 | None:intergenic | 60.0% | |
| GGATCGGGCGCGGTGGAGTG+AGG | + | chr1.3:3365259-3365278 | MS.gene26914:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3364235 | 3365809 | 3364235 | ID=MS.gene26914 |
| chr1.3 | mRNA | 3364235 | 3365809 | 3364235 | ID=MS.gene26914.t1;Parent=MS.gene26914 |
| chr1.3 | exon | 3364235 | 3365809 | 3364235 | ID=MS.gene26914.t1.exon1;Parent=MS.gene26914.t1 |
| chr1.3 | CDS | 3364235 | 3365809 | 3364235 | ID=cds.MS.gene26914.t1;Parent=MS.gene26914.t1 |
| Gene Sequence |
| Protein sequence |
