AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26925

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26925.t1 MTR_1g021855 97.548 367 9 0 1 367 1 367 0.0 743
MS.gene26925.t1 MTR_5g019220 76.205 332 68 3 46 367 37 367 0.0 531
MS.gene26925.t1 MTR_3g111600 86.525 282 37 1 86 367 1 281 0.0 515
MS.gene26925.t1 MTR_8g078240 72.948 329 80 3 40 366 23 344 0.0 512
MS.gene26925.t1 MTR_3g092310 62.145 317 101 4 46 360 34 333 1.12e-146 418
MS.gene26925.t1 MTR_6g008900 55.432 359 141 6 10 358 10 359 1.03e-140 404
MS.gene26925.t1 MTR_4g071620 55.432 359 141 6 10 358 10 359 1.03e-140 404
MS.gene26925.t1 MTR_7g094230 59.048 315 108 2 46 360 51 344 9.06e-139 399
MS.gene26925.t1 MTR_7g109210 54.775 356 137 6 12 358 10 350 1.69e-137 396
MS.gene26925.t1 MTR_5g036580 54.885 348 138 5 20 360 25 360 4.38e-137 396
MS.gene26925.t1 MTR_4g118030 58.675 317 112 4 46 361 42 340 1.47e-135 390
MS.gene26925.t1 MTR_1g089820 58.466 313 109 2 46 358 54 345 6.80e-133 384
MS.gene26925.t1 MTR_2g461670 32.642 193 118 6 165 356 395 576 4.66e-21 95.1
MS.gene26925.t1 MTR_4g109890 33.161 193 117 6 165 356 340 521 3.22e-20 92.4
MS.gene26925.t1 MTR_3g107930 27.843 255 171 8 111 363 337 580 4.00e-19 89.4
MS.gene26925.t1 MTR_3g107930 27.843 255 171 8 111 363 414 657 4.76e-19 89.0
MS.gene26925.t1 MTR_2g082650 30.151 199 122 8 165 356 209 397 3.82e-18 85.5
MS.gene26925.t1 MTR_2g015550 31.351 185 119 5 165 349 339 515 7.56e-18 85.1
MS.gene26925.t1 MTR_2g082650 30.151 199 122 8 165 356 338 526 8.11e-18 85.1
MS.gene26925.t1 MTR_8g092000 29.444 180 114 5 165 341 384 553 1.32e-17 84.7
MS.gene26925.t1 MTR_7g055600 28.643 199 132 6 165 363 238 426 3.03e-16 80.1
MS.gene26925.t1 MTR_7g057530 28.643 199 132 6 165 363 238 426 3.03e-16 80.1
MS.gene26925.t1 MTR_2g027740 29.444 180 114 5 165 341 471 640 4.08e-16 80.1
MS.gene26925.t1 MTR_7g075840 27.136 199 135 5 165 363 468 656 7.43e-16 79.3
MS.gene26925.t1 MTR_7g012370 28.571 182 116 6 165 339 334 508 9.04e-16 79.0
MS.gene26925.t1 MTR_4g133570 29.648 199 123 8 165 356 261 449 1.43e-15 78.2
MS.gene26925.t1 MTR_3g452360 21.835 316 188 10 86 356 65 366 1.16e-14 75.1
MS.gene26925.t1 MTR_6g016380 28.646 192 127 6 165 356 359 540 1.47e-14 75.5
MS.gene26925.t1 MTR_3g452360 21.835 316 188 10 86 356 214 515 1.85e-14 75.1
MS.gene26925.t1 MTR_8g033360 30.137 146 98 3 165 310 437 578 2.40e-14 74.7
MS.gene26925.t1 MTR_7g096160 27.957 186 124 7 163 345 453 631 3.73e-13 71.2
MS.gene26925.t1 MTR_6g013840 28.947 114 73 3 245 356 410 517 2.00e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26925.t1 AT3G50760 68.539 356 87 6 13 365 5 338 2.36e-178 499
MS.gene26925.t1 AT1G19300 76.061 330 76 2 40 367 23 351 5.15e-176 493
MS.gene26925.t1 AT4G02130 60.759 316 110 3 46 360 41 343 3.22e-145 415
MS.gene26925.t1 AT4G02130 60.759 316 110 3 46 360 41 343 3.22e-145 415
MS.gene26925.t1 AT4G02130 60.759 316 110 3 46 360 41 343 3.22e-145 415
MS.gene26925.t1 AT3G62660 67.138 283 89 2 76 358 77 355 2.65e-142 408
MS.gene26925.t1 AT1G02720 56.213 338 136 3 24 360 32 358 2.44e-139 400
MS.gene26925.t1 AT1G02720 56.213 338 136 3 24 360 32 358 2.44e-139 400
MS.gene26925.t1 AT1G70090 52.575 369 160 5 1 360 1 363 1.21e-138 400
MS.gene26925.t1 AT1G70090 52.575 369 160 5 1 360 1 363 1.21e-138 400
MS.gene26925.t1 AT3G06260 58.044 317 114 4 46 361 46 344 1.39e-137 395
MS.gene26925.t1 AT1G13250 59.877 324 119 4 46 367 31 345 5.69e-137 394
MS.gene26925.t1 AT1G24170 57.994 319 128 3 46 360 50 366 2.13e-136 394
MS.gene26925.t1 AT3G28340 57.595 316 124 4 48 361 44 351 1.00e-135 392
MS.gene26925.t1 AT1G18580 32.258 186 117 5 165 349 342 519 6.94e-21 94.4
MS.gene26925.t1 AT5G47780 31.667 180 110 5 165 341 420 589 1.16e-19 90.9
MS.gene26925.t1 AT5G54690 30.151 199 122 8 165 356 331 519 7.14e-19 88.6
MS.gene26925.t1 AT3G61130 30.198 202 125 7 165 363 477 665 8.84e-18 85.5
MS.gene26925.t1 AT4G38270 27.869 244 167 6 115 357 430 665 1.71e-17 84.3
MS.gene26925.t1 AT4G38270 27.869 244 167 6 115 357 434 669 1.90e-17 84.3
MS.gene26925.t1 AT3G25140 29.000 200 123 5 165 358 363 549 6.27e-17 82.4
MS.gene26925.t1 AT3G01040 25.287 261 172 9 110 356 233 484 8.59e-17 82.0
MS.gene26925.t1 AT2G30575 27.715 267 166 12 95 345 332 587 9.75e-17 82.0
MS.gene26925.t1 AT3G01040 27.778 198 128 7 165 356 329 517 1.67e-16 81.3
MS.gene26925.t1 AT3G01040 27.778 198 128 7 165 356 329 517 1.67e-16 81.3
MS.gene26925.t1 AT3G58790 30.000 200 122 8 165 356 336 525 1.87e-16 81.3
MS.gene26925.t1 AT3G58790 30.000 200 122 8 165 356 204 393 1.88e-16 80.5
MS.gene26925.t1 AT1G06780 27.586 261 162 9 95 339 324 573 1.93e-16 81.3
MS.gene26925.t1 AT1G06780 27.586 261 162 9 95 339 311 560 1.97e-16 81.3
MS.gene26925.t1 AT5G15470 26.768 198 130 7 165 356 329 517 5.81e-15 76.6
MS.gene26925.t1 AT2G46480 24.042 287 181 9 78 363 295 545 1.02e-14 75.9
MS.gene26925.t1 AT2G46480 24.042 287 181 9 78 363 282 532 1.03e-14 75.9
MS.gene26925.t1 AT2G20810 32.663 199 123 7 165 363 342 529 4.46e-13 70.9
MS.gene26925.t1 AT3G02350 29.167 192 126 6 165 356 365 546 6.60e-12 67.4
MS.gene26925.t1 AT2G46480 22.300 287 161 10 78 363 282 507 4.20e-11 64.7
MS.gene26925.t1 AT2G46480 22.300 287 161 10 78 363 295 520 5.34e-11 64.3

Find 74 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTCCTTTGGATGCTCTT+TGG 0.179612 1.3:+3238764 MS.gene26925:CDS
TTGTCCTTTGGATGCTCTTT+GGG 0.232558 1.3:+3238765 MS.gene26925:CDS
TCCTGTTCGGTGTCTTCTTC+TGG 0.234993 1.3:-3237917 None:intergenic
TTCGATGATTCAATCGTTTC+GGG 0.244627 1.3:+3238157 MS.gene26925:CDS
CAATTATGCAAGAAGCTATT+TGG 0.253341 1.3:+3238222 MS.gene26925:CDS
TTTACTTCACACCAACATTT+TGG 0.256817 1.3:+3238395 MS.gene26925:CDS
AATCAAGAATCAAGAGAAAA+TGG 0.308067 1.3:-3238811 None:intergenic
TTACTTTAATACCGGGGTTA+TGG 0.328231 1.3:+3238462 MS.gene26925:CDS
TTTCGATGATTCAATCGTTT+CGG 0.340870 1.3:+3238156 MS.gene26925:CDS
TGCTAATAGACCTTGTCCTT+TGG 0.372206 1.3:+3238753 MS.gene26925:CDS
AAACCTTGTTACTTTAATAC+CGG 0.397438 1.3:+3238454 MS.gene26925:CDS
TCACTGATGGAGGCACAATT+TGG 0.401749 1.3:-3237893 None:intergenic
GTCTTCTTCTGGTTCACTGA+TGG 0.403834 1.3:-3237906 None:intergenic
TTGTTCCTGTGGATCATAGA+TGG 0.412121 1.3:+3238617 MS.gene26925:CDS
GTCCAGTGAGTTTATTGCAT+TGG 0.440935 1.3:+3238698 MS.gene26925:CDS
TGCAATAAACTCACTGGACC+TGG 0.441630 1.3:-3238694 None:intergenic
TGCCACATGGACTGCTTCCT+CGG 0.445747 1.3:-3237960 None:intergenic
AATTGTAGACTTGGAATTTG+AGG 0.447752 1.3:-3238135 None:intergenic
AGGTAAACCATGGGTGAGAT+TGG 0.454495 1.3:+3238729 MS.gene26925:CDS
GCGAATGTTAAAGACAAAGA+TGG 0.456493 1.3:-3238424 None:intergenic
TTATTGCATTGGAGTGGAAA+AGG 0.458081 1.3:+3238709 MS.gene26925:CDS
TGTAAGAAAAGTTGTGTACT+TGG 0.460356 1.3:+3238264 MS.gene26925:CDS
ACCAGAAGAAGACACCGAAC+AGG 0.463727 1.3:+3237916 MS.gene26925:CDS
TTTGGTGAGTTGTAGAATTG+AGG 0.465286 1.3:-3237875 None:intergenic
GACAGAGAGGATTGCAGCCA+TGG 0.467068 1.3:-3238014 None:intergenic
GGTGTCTGCAAAAGATCATA+AGG 0.476961 1.3:-3238790 None:intergenic
AGATGGAATCAACATGGTCT+TGG 0.481062 1.3:+3238634 MS.gene26925:CDS
TTGGTGAGTTGTAGAATTGA+GGG 0.481706 1.3:-3237874 None:intergenic
TGCAGGGGAAATTGTTCCTG+TGG 0.488544 1.3:+3238606 MS.gene26925:CDS
TTCTTCTGGTTCACTGATGG+AGG 0.490980 1.3:-3237903 None:intergenic
AATCATCGAAATTGTAGACT+TGG 0.491592 1.3:-3238144 None:intergenic
TAGACTTGGAATTTGAGGTA+AGG 0.496272 1.3:-3238130 None:intergenic
AACCTTGTTACTTTAATACC+GGG 0.498666 1.3:+3238455 MS.gene26925:CDS
CTTTGTCGAGATCTTCATCC+AGG 0.499442 1.3:+3238676 MS.gene26925:CDS
AGACTTGGAATTTGAGGTAA+GGG 0.499769 1.3:-3238129 None:intergenic
AACATATATCCGAGGTTCCA+TGG 0.527756 1.3:+3237997 MS.gene26925:CDS
AACAAAGATTGAGGAATGGA+TGG 0.528450 1.3:+3238522 MS.gene26925:CDS
CGATATCATCAACTAAGATA+AGG 0.533837 1.3:-3238294 None:intergenic
CGAATGTTAAAGACAAAGAT+GGG 0.534888 1.3:-3238423 None:intergenic
TGTTAAAGACAAAGATGGGT+TGG 0.537673 1.3:-3238419 None:intergenic
CTCCAATGCAATAAACTCAC+TGG 0.539210 1.3:-3238700 None:intergenic
ATGAAGAAGTGAAGTGTTTG+AGG 0.542144 1.3:-3238086 None:intergenic
AGGATGAGAATCTATGAACT+TGG 0.551100 1.3:+3238556 MS.gene26925:CDS
TTTGTGGACATGATGAGTGT+TGG 0.558842 1.3:-3238039 None:intergenic
GTGAGTTTATTGCATTGGAG+TGG 0.561039 1.3:+3238703 MS.gene26925:CDS
ATCAAGTGCTGATCGAATTG+AGG 0.561859 1.3:-3238191 None:intergenic
GTGGACATGATGAGTGTTGG+AGG 0.566977 1.3:-3238036 None:intergenic
AATGGATGGAATTACAAAAG+AGG 0.570341 1.3:+3238536 MS.gene26925:CDS
TGATTCCATCTATGATCCAC+AGG 0.576078 1.3:-3238622 None:intergenic
TGGAATCAACATGGTCTTGG+TGG 0.582134 1.3:+3238637 MS.gene26925:CDS
TTAGCATCCAATCTCACCCA+TGG 0.582810 1.3:-3238736 None:intergenic
TGGTGAGTTGTAGAATTGAG+GGG 0.584816 1.3:-3237873 None:intergenic
TAGCTTCTTGCATAATTGAG+TGG 0.588805 1.3:-3238217 None:intergenic
ATATGTGTCAGTGTCCTGTT+CGG 0.588856 1.3:-3237930 None:intergenic
TGATTACACAACAAAGATTG+AGG 0.596745 1.3:+3238513 MS.gene26925:CDS
CAAAGAGCATCCAAAGGACA+AGG 0.605477 1.3:-3238763 None:intergenic
GGATTGCAGCCATGGAACCT+CGG 0.623683 1.3:-3238006 None:intergenic
TAGAGATTGAAGACACAAGA+GGG 0.627737 1.3:-3237780 None:intergenic
ACCCCGGTATTAAAGTAACA+AGG 0.631984 1.3:-3238457 None:intergenic
AAATTTGCATTGCAATACTC+CGG 0.633009 1.3:-3238367 None:intergenic
ATGAGTGTTGGAGGACAGAG+AGG 0.637026 1.3:-3238027 None:intergenic
GGAGTGGAAAAGGTAAACCA+TGG 0.642822 1.3:+3238719 MS.gene26925:CDS
TAGATCAATTACCATAACCC+CGG 0.646191 1.3:-3238473 None:intergenic
GATGGGTTGGACCAAAATGT+TGG 0.647131 1.3:-3238406 None:intergenic
ACACAACAAAGATTGAGGAA+TGG 0.651197 1.3:+3238518 MS.gene26925:CDS
TGTCTAATGTCATTGCCACA+TGG 0.655175 1.3:-3237973 None:intergenic
ATAGAGATTGAAGACACAAG+AGG 0.656250 1.3:-3237781 None:intergenic
GAGTGGAAAAGGTAAACCAT+GGG 0.662161 1.3:+3238720 MS.gene26925:CDS
ACCTTGTTACTTTAATACCG+GGG 0.664037 1.3:+3238456 MS.gene26925:CDS
CTCCGAGGAAGCAGTCCATG+TGG 0.686524 1.3:+3237958 MS.gene26925:CDS
GGTGCCCAAAGAGCATCCAA+AGG 0.694592 1.3:-3238769 None:intergenic
GATCATAGATGGAATCAACA+TGG 0.708687 1.3:+3238628 MS.gene26925:CDS
TTAGACACAACATATATCCG+AGG 0.716181 1.3:+3237989 MS.gene26925:CDS
TGACACATATATCTGCTCCG+AGG 0.786200 1.3:+3237943 MS.gene26925:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAAGAGTTTTGGTTT+TGG - chr1.3:3237746-3237765 None:intergenic 20.0%
!!! AATTGTTTTTCTTGTTTTTG+AGG - chr1.3:3237831-3237850 None:intergenic 20.0%
!!! AGAAAGAAAAATAAGAGTTT+TGG - chr1.3:3237752-3237771 None:intergenic 20.0%
! TGGTAATTGATCTAGAAAAA+TGG + chr1.3:3238482-3238501 MS.gene26925:CDS 25.0%
!! ACAACTTTTCTTACACATAA+TGG - chr1.3:3238259-3238278 None:intergenic 25.0%
!!! AAACCTTGTTACTTTAATAC+CGG + chr1.3:3238454-3238473 MS.gene26925:CDS 25.0%
!!! TGTTTTTGAGGCATTTTTTT+TGG - chr1.3:3237819-3237838 None:intergenic 25.0%
AAATTTGCATTGCAATACTC+CGG - chr1.3:3238370-3238389 None:intergenic 30.0%
AATCATCGAAATTGTAGACT+TGG - chr1.3:3238147-3238166 None:intergenic 30.0%
AATGGATGGAATTACAAAAG+AGG + chr1.3:3238536-3238555 MS.gene26925:CDS 30.0%
AATTGTAGACTTGGAATTTG+AGG - chr1.3:3238138-3238157 None:intergenic 30.0%
CAATTATGCAAGAAGCTATT+TGG + chr1.3:3238222-3238241 MS.gene26925:CDS 30.0%
CGAATGTTAAAGACAAAGAT+GGG - chr1.3:3238426-3238445 None:intergenic 30.0%
CGATATCATCAACTAAGATA+AGG - chr1.3:3238297-3238316 None:intergenic 30.0%
TGATTACACAACAAAGATTG+AGG + chr1.3:3238513-3238532 MS.gene26925:CDS 30.0%
TGTAAGAAAAGTTGTGTACT+TGG + chr1.3:3238264-3238283 MS.gene26925:CDS 30.0%
TTTCGATGATTCAATCGTTT+CGG + chr1.3:3238156-3238175 MS.gene26925:CDS 30.0%
! AAGTGAAAGATGATGTTTTG+TGG - chr1.3:3238058-3238077 None:intergenic 30.0%
! TTTACTTCACACCAACATTT+TGG + chr1.3:3238395-3238414 MS.gene26925:CDS 30.0%
!! AACCTTGTTACTTTAATACC+GGG + chr1.3:3238455-3238474 MS.gene26925:CDS 30.0%
!!! AGGGAATGATTTTGAGATTA+TGG - chr1.3:3238113-3238132 None:intergenic 30.0%
!!! CTTTTTTGCTTGTTTTTGCA+GGG + chr1.3:3238590-3238609 MS.gene26925:CDS 30.0%
!!! TGCCAAAACTGCATTTTTTT+CGG - chr1.3:3238344-3238363 None:intergenic 30.0%
!!! TTTTTTGCTTGTTTTTGCAG+GGG + chr1.3:3238591-3238610 MS.gene26925:CDS 30.0%
AACAAAGATTGAGGAATGGA+TGG + chr1.3:3238522-3238541 MS.gene26925:CDS 35.0%
ACACAACAAAGATTGAGGAA+TGG + chr1.3:3238518-3238537 MS.gene26925:CDS 35.0%
AGGATGAGAATCTATGAACT+TGG + chr1.3:3238556-3238575 MS.gene26925:CDS 35.0%
ATAGAGATTGAAGACACAAG+AGG - chr1.3:3237784-3237803 None:intergenic 35.0%
CCTGCAAAAACAAGCAAAAA+AGG - chr1.3:3238592-3238611 None:intergenic 35.0%
GATCATAGATGGAATCAACA+TGG + chr1.3:3238628-3238647 MS.gene26925:CDS 35.0%
GCAAAAACAAGCAAAAAAGG+TGG - chr1.3:3238589-3238608 None:intergenic 35.0%
GCGAATGTTAAAGACAAAGA+TGG - chr1.3:3238427-3238446 None:intergenic 35.0%
TAGAGATTGAAGACACAAGA+GGG - chr1.3:3237783-3237802 None:intergenic 35.0%
TAGATCAATTACCATAACCC+CGG - chr1.3:3238476-3238495 None:intergenic 35.0%
TAGCTTCTTGCATAATTGAG+TGG - chr1.3:3238220-3238239 None:intergenic 35.0%
TGTTAAAGACAAAGATGGGT+TGG - chr1.3:3238422-3238441 None:intergenic 35.0%
TTACTTTAATACCGGGGTTA+TGG + chr1.3:3238462-3238481 MS.gene26925:CDS 35.0%
TTAGACACAACATATATCCG+AGG + chr1.3:3237989-3238008 MS.gene26925:CDS 35.0%
TTATTGCATTGGAGTGGAAA+AGG + chr1.3:3238709-3238728 MS.gene26925:CDS 35.0%
TTCGATGATTCAATCGTTTC+GGG + chr1.3:3238157-3238176 MS.gene26925:CDS 35.0%
TTGGTGAGTTGTAGAATTGA+GGG - chr1.3:3237877-3237896 None:intergenic 35.0%
TTTGGTGAGTTGTAGAATTG+AGG - chr1.3:3237878-3237897 None:intergenic 35.0%
! AGACTTGGAATTTGAGGTAA+GGG - chr1.3:3238132-3238151 None:intergenic 35.0%
! AGCCGAAAAAAATGCAGTTT+TGG + chr1.3:3238339-3238358 MS.gene26925:CDS 35.0%
! ATGAAGAAGTGAAGTGTTTG+AGG - chr1.3:3238089-3238108 None:intergenic 35.0%
! TAGACTTGGAATTTGAGGTA+AGG - chr1.3:3238133-3238152 None:intergenic 35.0%
!! ACCTTGTTACTTTAATACCG+GGG + chr1.3:3238456-3238475 MS.gene26925:CDS 35.0%
!!! ACTGCATTTTTTTCGGCTAA+TGG - chr1.3:3238337-3238356 None:intergenic 35.0%
!!! CCTTTTTTGCTTGTTTTTGC+AGG + chr1.3:3238589-3238608 MS.gene26925:CDS 35.0%
!!! TGAGGCATTTTTTTTGGTGT+TGG - chr1.3:3237813-3237832 None:intergenic 35.0%
AACATATATCCGAGGTTCCA+TGG + chr1.3:3237997-3238016 MS.gene26925:CDS 40.0%
ACCCCGGTATTAAAGTAACA+AGG - chr1.3:3238460-3238479 None:intergenic 40.0%
AGATGGAATCAACATGGTCT+TGG + chr1.3:3238634-3238653 MS.gene26925:CDS 40.0%
ATATGTGTCAGTGTCCTGTT+CGG - chr1.3:3237933-3237952 None:intergenic 40.0%
CTCCAATGCAATAAACTCAC+TGG - chr1.3:3238703-3238722 None:intergenic 40.0%
GAGTGGAAAAGGTAAACCAT+GGG + chr1.3:3238720-3238739 MS.gene26925:CDS 40.0%
GGTGTCTGCAAAAGATCATA+AGG - chr1.3:3238793-3238812 None:intergenic 40.0%
GTCCAGTGAGTTTATTGCAT+TGG + chr1.3:3238698-3238717 MS.gene26925:CDS 40.0%
GTGAGTTTATTGCATTGGAG+TGG + chr1.3:3238703-3238722 MS.gene26925:CDS 40.0%
TGATTCCATCTATGATCCAC+AGG - chr1.3:3238625-3238644 None:intergenic 40.0%
TGCTAATAGACCTTGTCCTT+TGG + chr1.3:3238753-3238772 MS.gene26925:CDS 40.0%
TGGTGAGTTGTAGAATTGAG+GGG - chr1.3:3237876-3237895 None:intergenic 40.0%
TGTCTAATGTCATTGCCACA+TGG - chr1.3:3237976-3237995 None:intergenic 40.0%
TTGTCCTTTGGATGCTCTTT+GGG + chr1.3:3238765-3238784 MS.gene26925:CDS 40.0%
TTGTTCCTGTGGATCATAGA+TGG + chr1.3:3238617-3238636 MS.gene26925:CDS 40.0%
TTTGTGGACATGATGAGTGT+TGG - chr1.3:3238042-3238061 None:intergenic 40.0%
!! ATCAAGTGCTGATCGAATTG+AGG - chr1.3:3238194-3238213 None:intergenic 40.0%
!!! CTTGGTGGTGATAATTTTCG+AGG + chr1.3:3238652-3238671 MS.gene26925:CDS 40.0%
!!! GGCATTTTTTTTGGTGTTGG+AGG - chr1.3:3237810-3237829 None:intergenic 40.0%
AGGTAAACCATGGGTGAGAT+TGG + chr1.3:3238729-3238748 MS.gene26925:CDS 45.0%
CTTGTCCTTTGGATGCTCTT+TGG + chr1.3:3238764-3238783 MS.gene26925:CDS 45.0%
CTTTGTCGAGATCTTCATCC+AGG + chr1.3:3238676-3238695 MS.gene26925:CDS 45.0%
GATCTAGAAAAATGGCGCGA+CGG + chr1.3:3238490-3238509 MS.gene26925:CDS 45.0%
GGAGTGGAAAAGGTAAACCA+TGG + chr1.3:3238719-3238738 MS.gene26925:CDS 45.0%
TGACACATATATCTGCTCCG+AGG + chr1.3:3237943-3237962 MS.gene26925:CDS 45.0%
TGCAATAAACTCACTGGACC+TGG - chr1.3:3238697-3238716 None:intergenic 45.0%
TTAGCATCCAATCTCACCCA+TGG - chr1.3:3238739-3238758 None:intergenic 45.0%
! TCACTGATGGAGGCACAATT+TGG - chr1.3:3237896-3237915 None:intergenic 45.0%
! TGGAATCAACATGGTCTTGG+TGG + chr1.3:3238637-3238656 MS.gene26925:CDS 45.0%
!! AAATGCAGTTTTGGCAGCAC+CGG + chr1.3:3238348-3238367 MS.gene26925:CDS 45.0%
!! CAAAGAGCATCCAAAGGACA+AGG - chr1.3:3238766-3238785 None:intergenic 45.0%
!! GATGGGTTGGACCAAAATGT+TGG - chr1.3:3238409-3238428 None:intergenic 45.0%
!! GTCTTCTTCTGGTTCACTGA+TGG - chr1.3:3237909-3237928 None:intergenic 45.0%
!! TTCTTCTGGTTCACTGATGG+AGG - chr1.3:3237906-3237925 None:intergenic 45.0%
ACCAGAAGAAGACACCGAAC+AGG + chr1.3:3237916-3237935 MS.gene26925:CDS 50.0%
TGCAGGGGAAATTGTTCCTG+TGG + chr1.3:3238606-3238625 MS.gene26925:CDS 50.0%
!! ATGAGTGTTGGAGGACAGAG+AGG - chr1.3:3238030-3238049 None:intergenic 50.0%
!! GTGGACATGATGAGTGTTGG+AGG - chr1.3:3238039-3238058 None:intergenic 50.0%
!! TCCTGTTCGGTGTCTTCTTC+TGG - chr1.3:3237920-3237939 None:intergenic 50.0%
GACAGAGAGGATTGCAGCCA+TGG - chr1.3:3238017-3238036 None:intergenic 55.0%
GGATTGCAGCCATGGAACCT+CGG - chr1.3:3238009-3238028 None:intergenic 55.0%
! TGCCACATGGACTGCTTCCT+CGG - chr1.3:3237963-3237982 None:intergenic 55.0%
!! GGTGCCCAAAGAGCATCCAA+AGG - chr1.3:3238772-3238791 None:intergenic 55.0%
CTCCGAGGAAGCAGTCCATG+TGG + chr1.3:3237958-3237977 MS.gene26925:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 3237728 3238831 3237728 ID=MS.gene26925
chr1.3 mRNA 3237728 3238831 3237728 ID=MS.gene26925.t1;Parent=MS.gene26925
chr1.3 exon 3237728 3238831 3237728 ID=MS.gene26925.t1.exon1;Parent=MS.gene26925.t1
chr1.3 CDS 3237728 3238831 3237728 ID=cds.MS.gene26925.t1;Parent=MS.gene26925.t1
Gene Sequence

>MS.gene26925

ATGAAGATCAATTTTCCAAAACCAAAACTCTTATTTTTCTTTCTCATTCTCTCCCTCTTGTGTCTTCAATCTCTATCATCCTCCAACACCAAAAAAAATGCCTCAAAAACAAGAAAAACAATTATCAATGATCAATTCAAAGAAGCCCCTCAATTCTACAACTCACCAAATTGTGCCTCCATCAGTGAACCAGAAGAAGACACCGAACAGGACACTGACACATATATCTGCTCCGAGGAAGCAGTCCATGTGGCAATGACATTAGACACAACATATATCCGAGGTTCCATGGCTGCAATCCTCTCTGTCCTCCAACACTCATCATGTCCACAAAACATCATCTTTCACTTCGTTTGTTCCTCAAACACTTCACTTCTTCATTCCATAATCTCAAAATCATTCCCTTACCTCAAATTCCAAGTCTACAATTTCGATGATTCAATCGTTTCGGGATTAATCTCAACCTCAATTCGATCAGCACTTGATTGTCCACTCAATTATGCAAGAAGCTATTTGGCAAATCTAATTCCATTATGTGTAAGAAAAGTTGTGTACTTGGATTCAGACCTTATCTTAGTTGATGATATCGCAAAACTTGCATCAACACCATTAGCCGAAAAAAATGCAGTTTTGGCAGCACCGGAGTATTGCAATGCAAATTTCACATTTTACTTCACACCAACATTTTGGTCCAACCCATCTTTGTCTTTAACATTCGCGAATCGAAAACCTTGTTACTTTAATACCGGGGTTATGGTAATTGATCTAGAAAAATGGCGCGACGGTGATTACACAACAAAGATTGAGGAATGGATGGAATTACAAAAGAGGATGAGAATCTATGAACTTGGTTCATTGCCACCTTTTTTGCTTGTTTTTGCAGGGGAAATTGTTCCTGTGGATCATAGATGGAATCAACATGGTCTTGGTGGTGATAATTTTCGAGGTCTTTGTCGAGATCTTCATCCAGGTCCAGTGAGTTTATTGCATTGGAGTGGAAAAGGTAAACCATGGGTGAGATTGGATGCTAATAGACCTTGTCCTTTGGATGCTCTTTGGGCACCTTATGATCTTTTGCAGACACCATTTTCTCTTGATTCTTGA
Protein sequence

>MS.gene26925.t1

MKINFPKPKLLFFFLILSLLCLQSLSSSNTKKNASKTRKTIINDQFKEAPQFYNSPNCASISEPEEDTEQDTDTYICSEEAVHVAMTLDTTYIRGSMAAILSVLQHSSCPQNIIFHFVCSSNTSLLHSIISKSFPYLKFQVYNFDDSIVSGLISTSIRSALDCPLNYARSYLANLIPLCVRKVVYLDSDLILVDDIAKLASTPLAEKNAVLAAPEYCNANFTFYFTPTFWSNPSLSLTFANRKPCYFNTGVMVIDLEKWRDGDYTTKIEEWMELQKRMRIYELGSLPPFLLVFAGEIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWVRLDANRPCPLDALWAPYDLLQTPFSLDS