Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27074.t1 | RHN77606.1 | 88.1 | 540 | 59 | 3 | 1 | 538 | 84 | 620 | 1.00E-260 | 909.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27074.t1 | A0A396JH99 | 88.1 | 540 | 59 | 3 | 1 | 538 | 84 | 620 | 7.2e-261 | 909.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene27074 | 0.800537 | 1.38E-48 | -1.69E-46 |
| MS.gene052178 | MS.gene27074 | 0.800945 | 1.14E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene27074 | 0.81327 | 2.79E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene27074 | 0.804415 | 2.18E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene27074 | 0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene05702 | MS.gene27074 | 0.81562 | 8.42E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene27074 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene27074 | 0.80906 | 2.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27074.t1 | MTR_1g025180 | 88.148 | 540 | 59 | 3 | 1 | 538 | 84 | 620 | 0.0 | 958 |
| MS.gene27074.t1 | MTR_1g025180 | 87.712 | 472 | 53 | 3 | 69 | 538 | 1 | 469 | 0.0 | 833 |
| MS.gene27074.t1 | MTR_3g113840 | 40.773 | 569 | 274 | 12 | 1 | 518 | 75 | 631 | 4.85e-99 | 313 |
| MS.gene27074.t1 | MTR_3g113840 | 40.773 | 569 | 274 | 12 | 1 | 518 | 75 | 631 | 9.07e-99 | 313 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 108 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTCTTTGGGACCAATTT+TGG | 0.079863 | 1.1:-629033 | None:intergenic |
| TTGCTTGCTATCAAAATTTC+TGG | 0.161491 | 1.1:-630285 | None:intergenic |
| CATATTGAGTTCCATATAAT+TGG | 0.201785 | 1.1:-631608 | None:intergenic |
| CTTTGAGAGGGCAAAGTTAT+TGG | 0.215781 | 1.1:+629894 | MS.gene27074:CDS |
| TTTCTTCCACTTTGCCAATT+AGG | 0.222523 | 1.1:-631735 | None:intergenic |
| ATTCTATTCCATTGAACTTA+TGG | 0.246157 | 1.1:-628857 | None:intergenic |
| TGGTCCCAAAGAGGAGTTTC+TGG | 0.248234 | 1.1:+629040 | MS.gene27074:CDS |
| CCTACATCACAAGAAATATT+TGG | 0.257970 | 1.1:+631810 | MS.gene27074:CDS |
| TATTATGGTAGCCAATTATA+TGG | 0.264395 | 1.1:+631597 | MS.gene27074:CDS |
| ACTTTGCCAATTAGGATTCT+TGG | 0.266267 | 1.1:-631727 | None:intergenic |
| TTGCAACAACCTCGTTATTA+TGG | 0.286639 | 1.1:+631582 | MS.gene27074:CDS |
| TTCGCGACCGCGCTTCTTCA+TGG | 0.287658 | 1.1:-628805 | None:intergenic |
| TCTTTGAATGAAACTATTAA+TGG | 0.309949 | 1.1:+629862 | MS.gene27074:CDS |
| CTTGATCATCTGACTGTTGT+AGG | 0.310869 | 1.1:+631098 | MS.gene27074:CDS |
| CAATTATATGGAACTCAATA+TGG | 0.313814 | 1.1:+631609 | MS.gene27074:CDS |
| TCCTTGTCAACTGGAAGTTA+TGG | 0.329835 | 1.1:+630924 | MS.gene27074:CDS |
| AACTGGAAGTTATGGATTAA+AGG | 0.337379 | 1.1:+630932 | MS.gene27074:CDS |
| AACAGGAAATTGGCCAAAAT+TGG | 0.342250 | 1.1:+629020 | MS.gene27074:CDS |
| CGACTTTGATGCGTAGGAAT+TGG | 0.342514 | 1.1:-631056 | None:intergenic |
| AACTTGAACAGAATGATAAA+TGG | 0.345807 | 1.1:+630681 | MS.gene27074:CDS |
| GTTAATGCTTCTTCTCTTGA+AGG | 0.350352 | 1.1:+629214 | MS.gene27074:CDS |
| ATGCCATTCTTACTTTCATT+AGG | 0.351418 | 1.1:-630732 | None:intergenic |
| GCTTCAACATCTGGAGTATA+TGG | 0.354662 | 1.1:+630795 | MS.gene27074:CDS |
| TTCATGACACCCACGAAGAT+TGG | 0.367246 | 1.1:-630610 | None:intergenic |
| AGTGGACCAAGAATCCTAAT+TGG | 0.367921 | 1.1:+631721 | MS.gene27074:CDS |
| ATCGAAGTATCGAGTTCTTT+CGG | 0.379175 | 1.1:+630650 | MS.gene27074:CDS |
| CCAAATATTTCTTGTGATGT+AGG | 0.384332 | 1.1:-631810 | None:intergenic |
| GGGTATGAGGAAAGATGATT+TGG | 0.386388 | 1.1:-631788 | None:intergenic |
| TAGAACCAGAAACTCCTCTT+TGG | 0.387132 | 1.1:-629045 | None:intergenic |
| AATCTCTTGTCCTTGTCAAC+TGG | 0.388105 | 1.1:+630915 | MS.gene27074:CDS |
| ACTTGATGGAGAACCTTTCA+TGG | 0.391137 | 1.1:+629156 | MS.gene27074:CDS |
| TGTGCTATTGACTGAAAATA+AGG | 0.391533 | 1.1:-631017 | None:intergenic |
| TCTTGCCCATTTGTCTTGGA+TGG | 0.392860 | 1.1:-631880 | None:intergenic |
| TCTTGTGATGTAGGGGTATG+AGG | 0.395732 | 1.1:-631801 | None:intergenic |
| TCCAACGATTGAAGTAATCT+TGG | 0.396123 | 1.1:-631835 | None:intergenic |
| CATATTATCAAGGAACTTGA+TGG | 0.414010 | 1.1:+629142 | MS.gene27074:CDS |
| TCACAGGCTGCTTCAACATC+TGG | 0.416938 | 1.1:+630786 | MS.gene27074:CDS |
| CTTGCCCATTTGTCTTGGAT+GGG | 0.417595 | 1.1:-631879 | None:intergenic |
| AAGTTCCTTGATAATATGAT+TGG | 0.419867 | 1.1:-629137 | None:intergenic |
| CTGAAAATTGCAATATTAAG+TGG | 0.421088 | 1.1:+631703 | MS.gene27074:CDS |
| ATTATAATAAAGTTCGAAGT+AGG | 0.427697 | 1.1:+630967 | MS.gene27074:CDS |
| GGTATGAGGAAAGATGATTT+GGG | 0.428294 | 1.1:-631787 | None:intergenic |
| CAAATATTTCTTGTGATGTA+GGG | 0.435409 | 1.1:-631809 | None:intergenic |
| TCTGAGTTATGTCTAGCAAT+GGG | 0.437335 | 1.1:+630009 | MS.gene27074:CDS |
| ACCGCGTCTAATTCAACATC+TGG | 0.447105 | 1.1:-630171 | None:intergenic |
| GAAGGCCTTGCATTGTGGCC+AGG | 0.455023 | 1.1:+630465 | MS.gene27074:intron |
| TATATTCTAGCCTCGGTTCA+AGG | 0.456972 | 1.1:+629787 | MS.gene27074:intron |
| TTGCCCATTTGTCTTGGATG+GGG | 0.457853 | 1.1:-631878 | None:intergenic |
| AAGAAGAACCATAAGTTCAA+TGG | 0.458103 | 1.1:+628849 | MS.gene27074:CDS |
| CTTCGTGGGTGTCATGAAAC+GGG | 0.458795 | 1.1:+630615 | MS.gene27074:CDS |
| AAGATCTTGCCCATTTGTCT+TGG | 0.472158 | 1.1:-631884 | None:intergenic |
| TCTTCGTGGGTGTCATGAAA+CGG | 0.475577 | 1.1:+630614 | MS.gene27074:CDS |
| TTTACATCAGTCATGCGATT+CGG | 0.476699 | 1.1:+630550 | MS.gene27074:CDS |
| TGGAATAGAATCTCTAGAAA+AGG | 0.477113 | 1.1:+628869 | MS.gene27074:CDS |
| ATGGTCTGAAGATTTGTAGA+TGG | 0.482719 | 1.1:-629937 | None:intergenic |
| TATTCGTGATTAACCGTCTC+AGG | 0.493289 | 1.1:-629961 | None:intergenic |
| AGAACCAGAAACTCCTCTTT+GGG | 0.495390 | 1.1:-629044 | None:intergenic |
| AGAAATGACTATTCTGCAAT+GGG | 0.495928 | 1.1:+631753 | MS.gene27074:CDS |
| TAATAAAGTTCGAAGTAGGT+TGG | 0.496971 | 1.1:+630971 | MS.gene27074:CDS |
| TCCAAGATTACTTCAATCGT+TGG | 0.497011 | 1.1:+631834 | MS.gene27074:CDS |
| TATTCCAGATTAAATATGAC+TGG | 0.510410 | 1.1:+630117 | MS.gene27074:intron |
| AATCCTAATGAAAGTAAGAA+TGG | 0.512870 | 1.1:+630729 | MS.gene27074:CDS |
| TGAGAGGGCAAAGTTATTGG+TGG | 0.515588 | 1.1:+629897 | MS.gene27074:CDS |
| TGGTCTGAAGATTTGTAGAT+GGG | 0.528568 | 1.1:-629936 | None:intergenic |
| AGCTGAGACTCTGTATGCAT+TGG | 0.533537 | 1.1:+629090 | MS.gene27074:CDS |
| TGTCGTGAAAGTTGTTTACC+TGG | 0.537548 | 1.1:+629820 | MS.gene27074:CDS |
| AAGAAATGACTATTCTGCAA+TGG | 0.540060 | 1.1:+631752 | MS.gene27074:CDS |
| GTCAATAGCACAGCAGCAAA+GGG | 0.540185 | 1.1:+631028 | MS.gene27074:CDS |
| CTCTGAGTTATGTCTAGCAA+TGG | 0.542092 | 1.1:+630008 | MS.gene27074:CDS |
| CATCAGAAGGCCTTGCATTG+TGG | 0.543118 | 1.1:+630460 | MS.gene27074:intron |
| TGCCCATTTGTCTTGGATGG+GGG | 0.548139 | 1.1:-631877 | None:intergenic |
| TATGACACTGAACACAAGCC+TGG | 0.552462 | 1.1:-630483 | None:intergenic |
| TATCACAAAAGATGAGGAAG+AGG | 0.554801 | 1.1:+629066 | MS.gene27074:CDS |
| AGTCAATAGCACAGCAGCAA+AGG | 0.559727 | 1.1:+631027 | MS.gene27074:CDS |
| TGGCTCCAATCATATTATCA+AGG | 0.564589 | 1.1:+629132 | MS.gene27074:CDS |
| GTATGAGGAAAGATGATTTG+GGG | 0.565026 | 1.1:-631786 | None:intergenic |
| ACAAGCCTGGCCACAATGCA+AGG | 0.568663 | 1.1:-630470 | None:intergenic |
| TGCAACAAGCAGCTCAAGCT+AGG | 0.574393 | 1.1:+631676 | MS.gene27074:CDS |
| ATCAAAGAATCCAATCTTCG+TGG | 0.575463 | 1.1:+630600 | MS.gene27074:CDS |
| AAAACTTTCGCCTTGAACCG+AGG | 0.577034 | 1.1:-629797 | None:intergenic |
| GTGATTAACCGTCTCAGGCA+TGG | 0.580444 | 1.1:-629956 | None:intergenic |
| CTACAACAGTCAGATGATCA+AGG | 0.580745 | 1.1:-631097 | None:intergenic |
| GCGTAACGACTTTGATGCGT+AGG | 0.580775 | 1.1:-631062 | None:intergenic |
| AAGAATCCTAATTGGCAAAG+TGG | 0.585232 | 1.1:+631729 | MS.gene27074:CDS |
| TGGTCAAGAACTCTTTGAGA+GGG | 0.586250 | 1.1:+629882 | MS.gene27074:CDS |
| CCACTATGGTGAAATATCAC+AGG | 0.588135 | 1.1:+630770 | MS.gene27074:CDS |
| TCTGACTGTTGTAGGACCAC+AGG | 0.589844 | 1.1:+631106 | MS.gene27074:CDS |
| AAATATTTCTTGTGATGTAG+GGG | 0.592599 | 1.1:-631808 | None:intergenic |
| CACAAATTTCACAATGCGAG+AGG | 0.599720 | 1.1:+630145 | MS.gene27074:CDS |
| TCAAAGAATCCAATCTTCGT+GGG | 0.606393 | 1.1:+630601 | MS.gene27074:CDS |
| TATGAGGAAAGATGATTTGG+GGG | 0.607071 | 1.1:-631785 | None:intergenic |
| TCCATAACTTCCAGTTGACA+AGG | 0.614158 | 1.1:-630925 | None:intergenic |
| TGGTTCTATCACAAAAGATG+AGG | 0.614760 | 1.1:+629060 | MS.gene27074:CDS |
| ATGGTCAAGAACTCTTTGAG+AGG | 0.620090 | 1.1:+629881 | MS.gene27074:CDS |
| TCTTCAGACCATGCCTGAGA+CGG | 0.624612 | 1.1:+629948 | MS.gene27074:CDS |
| GGCCAAAATTGGTCCCAAAG+AGG | 0.643574 | 1.1:+629031 | MS.gene27074:CDS |
| CCTGTGATATTTCACCATAG+TGG | 0.644154 | 1.1:-630770 | None:intergenic |
| ATGATCAAGGTAAACTGTCG+AGG | 0.644271 | 1.1:-631084 | None:intergenic |
| CTTCATGTCCTGCAAAACTG+AGG | 0.654726 | 1.1:-629185 | None:intergenic |
| CTGAGTTATGTCTAGCAATG+GGG | 0.684708 | 1.1:+630010 | MS.gene27074:CDS |
| TAGTTACTTGTGATACTGTG+AGG | 0.687877 | 1.1:+630706 | MS.gene27074:CDS |
| GGTGCATGCAAATTTGACGA+CGG | 0.698733 | 1.1:-630996 | None:intergenic |
| GCAACAATGTTTCCTCACAG+TGG | 0.705825 | 1.1:+629112 | MS.gene27074:CDS |
| ATATGATTGGAGCCACTGTG+AGG | 0.708280 | 1.1:-629124 | None:intergenic |
| ATTACAGCCATGAAGAAGCG+CGG | 0.721076 | 1.1:+628798 | None:intergenic |
| ACCAGATGTTGAATTAGACG+CGG | 0.733787 | 1.1:+630170 | MS.gene27074:CDS |
| AATTGGCTACCATAATAACG+AGG | 0.777976 | 1.1:-631591 | None:intergenic |
| ATGAGGAAAGATGATTTGGG+GGG | 0.787407 | 1.1:-631784 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATGTTATTAATTACAA+AGG | - | chr1.1:630089-630108 | None:intergenic | 15.0% |
| !! | ACGATTTAATAAATAAAGAA+AGG | - | chr1.1:629738-629757 | None:intergenic | 15.0% |
| !! | TCTAATACATATATTAAGAA+CGG | - | chr1.1:631202-631221 | None:intergenic | 15.0% |
| !!! | ATATTACATTTTATATACAG+GGG | - | chr1.1:629566-629585 | None:intergenic | 15.0% |
| !!! | GATATTACATTTTATATACA+GGG | - | chr1.1:629567-629586 | None:intergenic | 15.0% |
| !!! | TTAATCTTTTATTTTTTGTC+AGG | - | chr1.1:629390-629409 | None:intergenic | 15.0% |
| !! | AAAATAAGAATTTACCACTT+AGG | - | chr1.1:630371-630390 | None:intergenic | 20.0% |
| !! | AAACTAGATTTGATAAAAGA+TGG | - | chr1.1:631316-631335 | None:intergenic | 20.0% |
| !! | AAAGTATATAGATTTCAGAA+TGG | - | chr1.1:630063-630082 | None:intergenic | 20.0% |
| !! | ATGAATGAACAAGTAAAAAA+TGG | + | chr1.1:630320-630339 | MS.gene27074:CDS | 20.0% |
| !! | ATTATAATAAAGTTCGAAGT+AGG | + | chr1.1:630967-630986 | MS.gene27074:CDS | 20.0% |
| !! | CAAATATTTGTAATGATTCA+AGG | + | chr1.1:629620-629639 | MS.gene27074:intron | 20.0% |
| !! | TCTTATATCATATAGAAGAA+GGG | - | chr1.1:629249-629268 | None:intergenic | 20.0% |
| !! | TCTTTGAATGAAACTATTAA+TGG | + | chr1.1:629862-629881 | MS.gene27074:CDS | 20.0% |
| !!! | GGATATTACATTTTATATAC+AGG | - | chr1.1:629568-629587 | None:intergenic | 20.0% |
| !!! | TAAGATACTTTTGTAGTAAT+AGG | - | chr1.1:631519-631538 | None:intergenic | 20.0% |
| !!! | TATTTTGATCATAAAAACAC+AGG | + | chr1.1:630385-630404 | MS.gene27074:intron | 20.0% |
| !!! | TCTTTGATAACTTTTTGTTT+TGG | - | chr1.1:630588-630607 | None:intergenic | 20.0% |
| !!! | TTTAAAAAGTTTTATGCTGA+TGG | - | chr1.1:629423-629442 | None:intergenic | 20.0% |
| ! | AAACTGAACAAACAAATTCT+AGG | + | chr1.1:631158-631177 | MS.gene27074:intron | 25.0% |
| ! | AAATATTTCTTGTGATGTAG+GGG | - | chr1.1:631811-631830 | None:intergenic | 25.0% |
| ! | AACAAATTAATCAATACCTG+TGG | - | chr1.1:631125-631144 | None:intergenic | 25.0% |
| ! | AACTTGAACAGAATGATAAA+TGG | + | chr1.1:630681-630700 | MS.gene27074:CDS | 25.0% |
| ! | AATATATGGCAAAAGAAAGT+GGG | - | chr1.1:629773-629792 | None:intergenic | 25.0% |
| ! | AATCCTAATGAAAGTAAGAA+TGG | + | chr1.1:630729-630748 | MS.gene27074:CDS | 25.0% |
| ! | AATGCAAAATTCCAAGTTAA+AGG | - | chr1.1:628993-629012 | None:intergenic | 25.0% |
| ! | ATCAAGGGATATATTTATGA+GGG | - | chr1.1:631496-631515 | None:intergenic | 25.0% |
| ! | ATCTACCTTAAAAGTCATAA+GGG | - | chr1.1:629589-629608 | None:intergenic | 25.0% |
| ! | ATTCTATTCCATTGAACTTA+TGG | - | chr1.1:628860-628879 | None:intergenic | 25.0% |
| ! | CAAATATTTCTTGTGATGTA+GGG | - | chr1.1:631812-631831 | None:intergenic | 25.0% |
| ! | CAATTATATGGAACTCAATA+TGG | + | chr1.1:631609-631628 | MS.gene27074:CDS | 25.0% |
| ! | CATATTGAGTTCCATATAAT+TGG | - | chr1.1:631611-631630 | None:intergenic | 25.0% |
| ! | CTCTTATATCATATAGAAGA+AGG | - | chr1.1:629250-629269 | None:intergenic | 25.0% |
| ! | CTGAAAATTGCAATATTAAG+TGG | + | chr1.1:631703-631722 | MS.gene27074:CDS | 25.0% |
| ! | GTATTGTAATAAGACATTTG+TGG | + | chr1.1:628916-628935 | MS.gene27074:intron | 25.0% |
| ! | TATTATGGTAGCCAATTATA+TGG | + | chr1.1:631597-631616 | MS.gene27074:CDS | 25.0% |
| ! | TATTCCAGATTAAATATGAC+TGG | + | chr1.1:630117-630136 | MS.gene27074:intron | 25.0% |
| !! | AAGTTCCTTGATAATATGAT+TGG | - | chr1.1:629140-629159 | None:intergenic | 25.0% |
| !! | AATATCCCTTATGACTTTTA+AGG | + | chr1.1:629581-629600 | MS.gene27074:intron | 25.0% |
| !! | ATTTTGCATTTTGTAGAAAC+AGG | + | chr1.1:629003-629022 | MS.gene27074:intron | 25.0% |
| !! | ATTTTGTAGAAACAGGAAAT+TGG | + | chr1.1:629010-629029 | MS.gene27074:intron | 25.0% |
| !! | CACTTCTCTACATTTAAAAT+GGG | + | chr1.1:629343-629362 | MS.gene27074:intron | 25.0% |
| !! | CATTTTAAATGTAGAGAAGT+GGG | - | chr1.1:629344-629363 | None:intergenic | 25.0% |
| !! | CTTTTCTTTATCATGTAAGA+TGG | - | chr1.1:628832-628851 | None:intergenic | 25.0% |
| !! | TTTTGTAGTAATAGGATCAA+GGG | - | chr1.1:631511-631530 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCCACCTTTAACT+TGG | + | chr1.1:628979-628998 | MS.gene27074:intron | 25.0% |
| AAACAACAAATTGTCCTAAG+TGG | + | chr1.1:630354-630373 | MS.gene27074:intron | 30.0% | |
| AAGAAATGACTATTCTGCAA+TGG | + | chr1.1:631752-631771 | MS.gene27074:CDS | 30.0% | |
| AAGAAGAACCATAAGTTCAA+TGG | + | chr1.1:628849-628868 | MS.gene27074:CDS | 30.0% | |
| ACAATTTAATTGTGGAGAAG+TGG | + | chr1.1:629517-629536 | MS.gene27074:intron | 30.0% | |
| ACATTGCATAATATATGCAC+GGG | + | chr1.1:629314-629333 | MS.gene27074:intron | 30.0% | |
| ACTCTAACAACGAAATAACA+TGG | + | chr1.1:631454-631473 | MS.gene27074:intron | 30.0% | |
| AGAAATGACTATTCTGCAAT+GGG | + | chr1.1:631753-631772 | MS.gene27074:CDS | 30.0% | |
| ATGCCATTCTTACTTTCATT+AGG | - | chr1.1:630735-630754 | None:intergenic | 30.0% | |
| CATATTATCAAGGAACTTGA+TGG | + | chr1.1:629142-629161 | MS.gene27074:CDS | 30.0% | |
| CCAAATATTTCTTGTGATGT+AGG | - | chr1.1:631813-631832 | None:intergenic | 30.0% | |
| CCACTTCTCTACATTTAAAA+TGG | + | chr1.1:629342-629361 | MS.gene27074:intron | 30.0% | |
| CCTACATCACAAGAAATATT+TGG | + | chr1.1:631810-631829 | MS.gene27074:CDS | 30.0% | |
| GAATATATGGCAAAAGAAAG+TGG | - | chr1.1:629774-629793 | None:intergenic | 30.0% | |
| GACATTGCATAATATATGCA+CGG | + | chr1.1:629313-629332 | MS.gene27074:intron | 30.0% | |
| GATCAAGGGATATATTTATG+AGG | - | chr1.1:631497-631516 | None:intergenic | 30.0% | |
| GATCTACCTTAAAAGTCATA+AGG | - | chr1.1:629590-629609 | None:intergenic | 30.0% | |
| GCTACTTGACAAAAAAAGAA+AGG | - | chr1.1:629479-629498 | None:intergenic | 30.0% | |
| TAATAAAGTTCGAAGTAGGT+TGG | + | chr1.1:630971-630990 | MS.gene27074:CDS | 30.0% | |
| TACTTAGAAGACAAAGCAAA+AGG | - | chr1.1:628956-628975 | None:intergenic | 30.0% | |
| TGCAGATAATTTAAGCATCA+TGG | - | chr1.1:631555-631574 | None:intergenic | 30.0% | |
| TTGTCCAGTCATATTTAATC+TGG | - | chr1.1:630124-630143 | None:intergenic | 30.0% | |
| ! | AACTGGAAGTTATGGATTAA+AGG | + | chr1.1:630932-630951 | MS.gene27074:CDS | 30.0% |
| ! | AGTAAGATCGAGGTTTATTT+TGG | + | chr1.1:630830-630849 | MS.gene27074:intron | 30.0% |
| ! | CCATTTTAAATGTAGAGAAG+TGG | - | chr1.1:629345-629364 | None:intergenic | 30.0% |
| ! | CTTTTGTAGTAATAGGATCA+AGG | - | chr1.1:631512-631531 | None:intergenic | 30.0% |
| ! | TGGAATAGAATCTCTAGAAA+AGG | + | chr1.1:628869-628888 | MS.gene27074:CDS | 30.0% |
| ! | TGTGCTATTGACTGAAAATA+AGG | - | chr1.1:631020-631039 | None:intergenic | 30.0% |
| !! | GCTATTAGTACTGATGTTAT+TGG | + | chr1.1:630239-630258 | MS.gene27074:intron | 30.0% |
| !! | TAGGACAATTTGTTGTTTGT+GGG | - | chr1.1:630352-630371 | None:intergenic | 30.0% |
| !! | TTAGGACAATTTGTTGTTTG+TGG | - | chr1.1:630353-630372 | None:intergenic | 30.0% |
| !! | TTGCTTGCTATCAAAATTTC+TGG | - | chr1.1:630288-630307 | None:intergenic | 30.0% |
| AACAGGAAATTGGCCAAAAT+TGG | + | chr1.1:629020-629039 | MS.gene27074:CDS | 35.0% | |
| AAGAATCCTAATTGGCAAAG+TGG | + | chr1.1:631729-631748 | MS.gene27074:CDS | 35.0% | |
| AATTGGCTACCATAATAACG+AGG | - | chr1.1:631594-631613 | None:intergenic | 35.0% | |
| ACTCTACTATGAGTCACTAT+GGG | + | chr1.1:631336-631355 | MS.gene27074:intron | 35.0% | |
| ACTTTGCCAATTAGGATTCT+TGG | - | chr1.1:631730-631749 | None:intergenic | 35.0% | |
| ATATCGCGAAAAAGTTGCAT+TGG | + | chr1.1:629981-630000 | MS.gene27074:CDS | 35.0% | |
| ATCAAAAGCAAGTAAGATCG+AGG | + | chr1.1:630820-630839 | MS.gene27074:intron | 35.0% | |
| ATCAAAGAATCCAATCTTCG+TGG | + | chr1.1:630600-630619 | MS.gene27074:CDS | 35.0% | |
| ATGGTCTGAAGATTTGTAGA+TGG | - | chr1.1:629940-629959 | None:intergenic | 35.0% | |
| CATAACAAGGATGGTTATCA+GGG | - | chr1.1:630886-630905 | None:intergenic | 35.0% | |
| GAGCTCACACAATTTAATTG+TGG | + | chr1.1:629509-629528 | MS.gene27074:intron | 35.0% | |
| GATTGAAACTCTGCATAACA+AGG | - | chr1.1:630899-630918 | None:intergenic | 35.0% | |
| GCAAAATTCCAAGTTAAAGG+TGG | - | chr1.1:628990-629009 | None:intergenic | 35.0% | |
| GGTATGAGGAAAGATGATTT+GGG | - | chr1.1:631790-631809 | None:intergenic | 35.0% | |
| GTATGAGGAAAGATGATTTG+GGG | - | chr1.1:631789-631808 | None:intergenic | 35.0% | |
| GTTAATGCTTCTTCTCTTGA+AGG | + | chr1.1:629214-629233 | MS.gene27074:CDS | 35.0% | |
| TACTCTACTATGAGTCACTA+TGG | + | chr1.1:631335-631354 | MS.gene27074:intron | 35.0% | |
| TAGCTGATCACTATGAAATG+AGG | + | chr1.1:631393-631412 | MS.gene27074:intron | 35.0% | |
| TAGTTACTTGTGATACTGTG+AGG | + | chr1.1:630706-630725 | MS.gene27074:CDS | 35.0% | |
| TATCACAAAAGATGAGGAAG+AGG | + | chr1.1:629066-629085 | MS.gene27074:CDS | 35.0% | |
| TCAAAGAATCCAATCTTCGT+GGG | + | chr1.1:630601-630620 | MS.gene27074:CDS | 35.0% | |
| TCCAACGATTGAAGTAATCT+TGG | - | chr1.1:631838-631857 | None:intergenic | 35.0% | |
| TCCAAGATTACTTCAATCGT+TGG | + | chr1.1:631834-631853 | MS.gene27074:CDS | 35.0% | |
| TCTGAGTTATGTCTAGCAAT+GGG | + | chr1.1:630009-630028 | MS.gene27074:CDS | 35.0% | |
| TGGCTCCAATCATATTATCA+AGG | + | chr1.1:629132-629151 | MS.gene27074:CDS | 35.0% | |
| TGGTCTGAAGATTTGTAGAT+GGG | - | chr1.1:629939-629958 | None:intergenic | 35.0% | |
| TTAAATGTAGAGAAGTGGGT+CGG | - | chr1.1:629340-629359 | None:intergenic | 35.0% | |
| TTGCAACAACCTCGTTATTA+TGG | + | chr1.1:631582-631601 | MS.gene27074:CDS | 35.0% | |
| TTTACATCAGTCATGCGATT+CGG | + | chr1.1:630550-630569 | MS.gene27074:CDS | 35.0% | |
| TTTCTTCCACTTTGCCAATT+AGG | - | chr1.1:631738-631757 | None:intergenic | 35.0% | |
| TTTGCCATATATTCTAGCCT+CGG | + | chr1.1:629780-629799 | MS.gene27074:intron | 35.0% | |
| ! | TACATTTTATATACAGGGGC+CGG | - | chr1.1:629562-629581 | None:intergenic | 35.0% |
| ! | TATGAGGAAAGATGATTTGG+GGG | - | chr1.1:631788-631807 | None:intergenic | 35.0% |
| ! | TGGTTCTATCACAAAAGATG+AGG | + | chr1.1:629060-629079 | MS.gene27074:CDS | 35.0% |
| !! | AACAAGAGCACCAAAAATTG+TGG | + | chr1.1:631649-631668 | MS.gene27074:CDS | 35.0% |
| !! | ACAAGAGCACCAAAAATTGT+GGG | + | chr1.1:631650-631669 | MS.gene27074:CDS | 35.0% |
| !! | ATCGAAGTATCGAGTTCTTT+CGG | + | chr1.1:630650-630669 | MS.gene27074:CDS | 35.0% |
| !! | CTTTCTGTTGTTTCATCAGA+AGG | + | chr1.1:630447-630466 | MS.gene27074:intron | 35.0% |
| !! | GTGATTTTTGAAGATTCTCC+AGG | - | chr1.1:629841-629860 | None:intergenic | 35.0% |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | + | chr1.1:629483-629502 | MS.gene27074:intron | 35.0% |
| AAGATCTTGCCCATTTGTCT+TGG | - | chr1.1:631887-631906 | None:intergenic | 40.0% | |
| AATCTCTTGTCCTTGTCAAC+TGG | + | chr1.1:630915-630934 | MS.gene27074:CDS | 40.0% | |
| ACCAGATGTTGAATTAGACG+CGG | + | chr1.1:630170-630189 | MS.gene27074:CDS | 40.0% | |
| ACTTGATGGAGAACCTTTCA+TGG | + | chr1.1:629156-629175 | MS.gene27074:CDS | 40.0% | |
| AGAACCAGAAACTCCTCTTT+GGG | - | chr1.1:629047-629066 | None:intergenic | 40.0% | |
| AGAGCATAGGTGTATTCATG+TGG | - | chr1.1:631368-631387 | None:intergenic | 40.0% | |
| AGTGGACCAAGAATCCTAAT+TGG | + | chr1.1:631721-631740 | MS.gene27074:CDS | 40.0% | |
| ATGATCAAGGTAAACTGTCG+AGG | - | chr1.1:631087-631106 | None:intergenic | 40.0% | |
| ATGGTCAAGAACTCTTTGAG+AGG | + | chr1.1:629881-629900 | MS.gene27074:CDS | 40.0% | |
| CACAAATTTCACAATGCGAG+AGG | + | chr1.1:630145-630164 | MS.gene27074:CDS | 40.0% | |
| CCACTATGGTGAAATATCAC+AGG | + | chr1.1:630770-630789 | MS.gene27074:CDS | 40.0% | |
| CCTGTGATATTTCACCATAG+TGG | - | chr1.1:630773-630792 | None:intergenic | 40.0% | |
| CTACAACAGTCAGATGATCA+AGG | - | chr1.1:631100-631119 | None:intergenic | 40.0% | |
| CTCTGAGTTATGTCTAGCAA+TGG | + | chr1.1:630008-630027 | MS.gene27074:CDS | 40.0% | |
| CTGAGTTATGTCTAGCAATG+GGG | + | chr1.1:630010-630029 | MS.gene27074:CDS | 40.0% | |
| CTTGATCATCTGACTGTTGT+AGG | + | chr1.1:631098-631117 | MS.gene27074:CDS | 40.0% | |
| GAAACTCTGCATAACAAGGA+TGG | - | chr1.1:630895-630914 | None:intergenic | 40.0% | |
| GAACGGAGTATAGAAGAGTT+AGG | - | chr1.1:631185-631204 | None:intergenic | 40.0% | |
| GCATAACAAGGATGGTTATC+AGG | - | chr1.1:630887-630906 | None:intergenic | 40.0% | |
| GGGTATGAGGAAAGATGATT+TGG | - | chr1.1:631791-631810 | None:intergenic | 40.0% | |
| TAGAACCAGAAACTCCTCTT+TGG | - | chr1.1:629048-629067 | None:intergenic | 40.0% | |
| TATATTCTAGCCTCGGTTCA+AGG | + | chr1.1:629787-629806 | MS.gene27074:intron | 40.0% | |
| TATTCGTGATTAACCGTCTC+AGG | - | chr1.1:629964-629983 | None:intergenic | 40.0% | |
| TCCATAACTTCCAGTTGACA+AGG | - | chr1.1:630928-630947 | None:intergenic | 40.0% | |
| TCCTTGTCAACTGGAAGTTA+TGG | + | chr1.1:630924-630943 | MS.gene27074:CDS | 40.0% | |
| TGAACCGAGGCTAGAATATA+TGG | - | chr1.1:629787-629806 | None:intergenic | 40.0% | |
| TGTCGTGAAAGTTGTTTACC+TGG | + | chr1.1:629820-629839 | MS.gene27074:CDS | 40.0% | |
| ! | ACATTTTATATACAGGGGCC+GGG | - | chr1.1:629561-629580 | None:intergenic | 40.0% |
| ! | ACTGAGGAGTTTTCCATGAA+AGG | - | chr1.1:629172-629191 | None:intergenic | 40.0% |
| ! | ATCAGCTAGAAAGAGAGCAT+AGG | - | chr1.1:631381-631400 | None:intergenic | 40.0% |
| ! | ATGAGGAAAGATGATTTGGG+GGG | - | chr1.1:631787-631806 | None:intergenic | 40.0% |
| ! | CTTTGAGAGGGCAAAGTTAT+TGG | + | chr1.1:629894-629913 | MS.gene27074:CDS | 40.0% |
| ! | GCTTCAACATCTGGAGTATA+TGG | + | chr1.1:630795-630814 | MS.gene27074:CDS | 40.0% |
| ! | GTTAGAGTGTTTGAGAAGCT+TGG | + | chr1.1:631222-631241 | MS.gene27074:intron | 40.0% |
| ! | TGGTCAAGAACTCTTTGAGA+GGG | + | chr1.1:629882-629901 | MS.gene27074:CDS | 40.0% |
| !! | AAGAGCACCAAAAATTGTGG+GGG | + | chr1.1:631652-631671 | MS.gene27074:CDS | 40.0% |
| !! | CAAGAGCACCAAAAATTGTG+GGG | + | chr1.1:631651-631670 | MS.gene27074:CDS | 40.0% |
| !!! | TTTTTTGTCAGGTAGCCTAG+TGG | - | chr1.1:629379-629398 | None:intergenic | 40.0% |
| AAAACTTTCGCCTTGAACCG+AGG | - | chr1.1:629800-629819 | None:intergenic | 45.0% | |
| ACCGCGTCTAATTCAACATC+TGG | - | chr1.1:630174-630193 | None:intergenic | 45.0% | |
| AGCTGAGACTCTGTATGCAT+TGG | + | chr1.1:629090-629109 | MS.gene27074:CDS | 45.0% | |
| AGTCAATAGCACAGCAGCAA+AGG | + | chr1.1:631027-631046 | MS.gene27074:CDS | 45.0% | |
| ATATGATTGGAGCCACTGTG+AGG | - | chr1.1:629127-629146 | None:intergenic | 45.0% | |
| ATGGTTATCAGGGCGTGAAA+GGG | - | chr1.1:630876-630895 | None:intergenic | 45.0% | |
| CGACTTTGATGCGTAGGAAT+TGG | - | chr1.1:631059-631078 | None:intergenic | 45.0% | |
| CTTCATGTCCTGCAAAACTG+AGG | - | chr1.1:629188-629207 | None:intergenic | 45.0% | |
| CTTGCCCATTTGTCTTGGAT+GGG | - | chr1.1:631882-631901 | None:intergenic | 45.0% | |
| GATGTTGAATTAGACGCGGT+AGG | + | chr1.1:630174-630193 | MS.gene27074:intron | 45.0% | |
| GCAACAATGTTTCCTCACAG+TGG | + | chr1.1:629112-629131 | MS.gene27074:CDS | 45.0% | |
| GGTGCATGCAAATTTGACGA+CGG | - | chr1.1:630999-631018 | None:intergenic | 45.0% | |
| GTCAATAGCACAGCAGCAAA+GGG | + | chr1.1:631028-631047 | MS.gene27074:CDS | 45.0% | |
| TAACCCTGCGTTCACATTTC+AGG | + | chr1.1:630262-630281 | MS.gene27074:intron | 45.0% | |
| TATGACACTGAACACAAGCC+TGG | - | chr1.1:630486-630505 | None:intergenic | 45.0% | |
| TCTTGCCCATTTGTCTTGGA+TGG | - | chr1.1:631883-631902 | None:intergenic | 45.0% | |
| TGAGAGGGCAAAGTTATTGG+TGG | + | chr1.1:629897-629916 | MS.gene27074:CDS | 45.0% | |
| TGCCAATTGAGCTAAGCTCA+CGG | - | chr1.1:629291-629310 | None:intergenic | 45.0% | |
| TTCATGACACCCACGAAGAT+TGG | - | chr1.1:630613-630632 | None:intergenic | 45.0% | |
| TTCCCCCATCCAAGACAAAT+GGG | + | chr1.1:631875-631894 | MS.gene27074:CDS | 45.0% | |
| TTGCCCATTTGTCTTGGATG+GGG | - | chr1.1:631881-631900 | None:intergenic | 45.0% | |
| TTTCCCCCATCCAAGACAAA+TGG | + | chr1.1:631874-631893 | MS.gene27074:CDS | 45.0% | |
| ! | CATTTTATATACAGGGGCCG+GGG | - | chr1.1:629560-629579 | None:intergenic | 45.0% |
| ! | CTCAGTTTTGCAGGACATGA+AGG | + | chr1.1:629186-629205 | MS.gene27074:CDS | 45.0% |
| ! | CTTTTGCAGCAATGCCACTA+TGG | + | chr1.1:630756-630775 | MS.gene27074:CDS | 45.0% |
| ! | GGAAAACTCCTCAGTTTTGC+AGG | + | chr1.1:629177-629196 | MS.gene27074:CDS | 45.0% |
| ! | GTTGCATCCCCCACAATTTT+TGG | - | chr1.1:631662-631681 | None:intergenic | 45.0% |
| ! | TCTTCGTGGGTGTCATGAAA+CGG | + | chr1.1:630614-630633 | MS.gene27074:CDS | 45.0% |
| ! | TCTTGTGATGTAGGGGTATG+AGG | - | chr1.1:631804-631823 | None:intergenic | 45.0% |
| !!! | CTCCTCTTTGGGACCAATTT+TGG | - | chr1.1:629036-629055 | None:intergenic | 45.0% |
| CATCAGAAGGCCTTGCATTG+TGG | + | chr1.1:630460-630479 | MS.gene27074:intron | 50.0% | |
| CCAATTGAGCTAAGCTCACG+GGG | - | chr1.1:629289-629308 | None:intergenic | 50.0% | |
| GATGGTTATCAGGGCGTGAA+AGG | - | chr1.1:630877-630896 | None:intergenic | 50.0% | |
| GCCAATTGAGCTAAGCTCAC+GGG | - | chr1.1:629290-629309 | None:intergenic | 50.0% | |
| GCGTAACGACTTTGATGCGT+AGG | - | chr1.1:631065-631084 | None:intergenic | 50.0% | |
| GGCCAAAATTGGTCCCAAAG+AGG | + | chr1.1:629031-629050 | MS.gene27074:CDS | 50.0% | |
| GTGATTAACCGTCTCAGGCA+TGG | - | chr1.1:629959-629978 | None:intergenic | 50.0% | |
| TCACAGGCTGCTTCAACATC+TGG | + | chr1.1:630786-630805 | MS.gene27074:CDS | 50.0% | |
| TCTGACTGTTGTAGGACCAC+AGG | + | chr1.1:631106-631125 | MS.gene27074:CDS | 50.0% | |
| TCTTCAGACCATGCCTGAGA+CGG | + | chr1.1:629948-629967 | MS.gene27074:CDS | 50.0% | |
| TGCAACAAGCAGCTCAAGCT+AGG | + | chr1.1:631676-631695 | MS.gene27074:CDS | 50.0% | |
| TGCCCATTTGTCTTGGATGG+GGG | - | chr1.1:631880-631899 | None:intergenic | 50.0% | |
| TGGCCTGAAATGTGAACGCA+GGG | - | chr1.1:630268-630287 | None:intergenic | 50.0% | |
| TGGTCCCAAAGAGGAGTTTC+TGG | + | chr1.1:629040-629059 | MS.gene27074:CDS | 50.0% | |
| TGGTTATCAGGGCGTGAAAG+GGG | - | chr1.1:630875-630894 | None:intergenic | 50.0% | |
| ! | AAGATGATTTGGGGGGCACA+TGG | - | chr1.1:631780-631799 | None:intergenic | 50.0% |
| ! | CTTCGTGGGTGTCATGAAAC+GGG | + | chr1.1:630615-630634 | MS.gene27074:CDS | 50.0% |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | - | chr1.1:629501-629520 | None:intergenic | 50.0% |
| ACAAGCCTGGCCACAATGCA+AGG | - | chr1.1:630473-630492 | None:intergenic | 55.0% | |
| AGGGCGTGAAAGGGGATAAG+GGG | - | chr1.1:630867-630886 | None:intergenic | 55.0% | |
| CAGGGCGTGAAAGGGGATAA+GGG | - | chr1.1:630868-630887 | None:intergenic | 55.0% | |
| CCCCGTGAGCTTAGCTCAAT+TGG | + | chr1.1:629286-629305 | MS.gene27074:intron | 55.0% | |
| CTGGCCTGAAATGTGAACGC+AGG | - | chr1.1:630269-630288 | None:intergenic | 55.0% | |
| TCAGGGCGTGAAAGGGGATA+AGG | - | chr1.1:630869-630888 | None:intergenic | 55.0% | |
| TTGTCAGGTAGCCTAGTGGC+TGG | - | chr1.1:629375-629394 | None:intergenic | 55.0% | |
| AGTGTCCGAGGTTCGAACCC+CGG | + | chr1.1:629540-629559 | MS.gene27074:intron | 60.0% | |
| ATGGGTGAGCTCCAGCCACT+AGG | + | chr1.1:629361-629380 | MS.gene27074:intron | 60.0% | |
| GAAGGCCTTGCATTGTGGCC+AGG | + | chr1.1:630465-630484 | MS.gene27074:intron | 60.0% | |
| ! | GTGGAGAAGTGGAGTGTCCG+AGG | + | chr1.1:629528-629547 | MS.gene27074:intron | 60.0% |
| AGGGGCCGGGGTTCGAACCT+CGG | - | chr1.1:629548-629567 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 628807 | 631926 | 628807 | ID=MS.gene27074 |
| chr1.1 | mRNA | 628807 | 631926 | 628807 | ID=MS.gene27074.t1;Parent=MS.gene27074 |
| chr1.1 | exon | 628807 | 628911 | 628807 | ID=MS.gene27074.t1.exon1;Parent=MS.gene27074.t1 |
| chr1.1 | CDS | 628807 | 628911 | 628807 | ID=cds.MS.gene27074.t1;Parent=MS.gene27074.t1 |
| chr1.1 | exon | 629019 | 629235 | 629019 | ID=MS.gene27074.t1.exon2;Parent=MS.gene27074.t1 |
| chr1.1 | CDS | 629019 | 629235 | 629019 | ID=cds.MS.gene27074.t1;Parent=MS.gene27074.t1 |
| chr1.1 | exon | 629797 | 630031 | 629797 | ID=MS.gene27074.t1.exon3;Parent=MS.gene27074.t1 |
| chr1.1 | CDS | 629797 | 630031 | 629797 | ID=cds.MS.gene27074.t1;Parent=MS.gene27074.t1 |
| chr1.1 | exon | 630125 | 630191 | 630125 | ID=MS.gene27074.t1.exon4;Parent=MS.gene27074.t1 |
| chr1.1 | CDS | 630125 | 630191 | 630125 | ID=cds.MS.gene27074.t1;Parent=MS.gene27074.t1 |
| chr1.1 | exon | 630284 | 630341 | 630284 | ID=MS.gene27074.t1.exon5;Parent=MS.gene27074.t1 |
| chr1.1 | CDS | 630284 | 630341 | 630284 | ID=cds.MS.gene27074.t1;Parent=MS.gene27074.t1 |
| chr1.1 | exon | 630466 | 630830 | 630466 | ID=MS.gene27074.t1.exon6;Parent=MS.gene27074.t1 |
| chr1.1 | CDS | 630466 | 630830 | 630466 | ID=cds.MS.gene27074.t1;Parent=MS.gene27074.t1 |
| chr1.1 | exon | 630909 | 631127 | 630909 | ID=MS.gene27074.t1.exon7;Parent=MS.gene27074.t1 |
| chr1.1 | CDS | 630909 | 631127 | 630909 | ID=cds.MS.gene27074.t1;Parent=MS.gene27074.t1 |
| chr1.1 | exon | 631576 | 631926 | 631576 | ID=MS.gene27074.t1.exon8;Parent=MS.gene27074.t1 |
| chr1.1 | CDS | 631576 | 631926 | 631576 | ID=cds.MS.gene27074.t1;Parent=MS.gene27074.t1 |
| Gene Sequence |
| Protein sequence |
