Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27111.t1 | PNY12007.1 | 86.8 | 379 | 46 | 1 | 1 | 375 | 1 | 379 | 2.30E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27111.t1 | Q8LAH7 | 65.4 | 370 | 122 | 3 | 9 | 376 | 5 | 370 | 1.5e-142 | 507.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27111.t1 | A0A2K3P9Q7 | 86.8 | 379 | 46 | 1 | 1 | 375 | 1 | 379 | 1.7e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050605 | MS.gene27111 | 0.808509 | 2.99E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene27111 | 0.81505 | 1.13E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene27111 | 0.81633 | 5.85E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene27111 | 0.821966 | 3.05E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene27111 | 0.852282 | 5.11E-61 | -1.69E-46 |
| MS.gene054405 | MS.gene27111 | 0.816514 | 5.32E-52 | -1.69E-46 |
| MS.gene055367 | MS.gene27111 | 0.834065 | 3.72E-56 | -1.69E-46 |
| MS.gene055701 | MS.gene27111 | 0.864405 | 1.25E-64 | -1.69E-46 |
| MS.gene05595 | MS.gene27111 | 0.806046 | 9.95E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene27111 | 0.800657 | 1.30E-48 | -1.69E-46 |
| MS.gene057156 | MS.gene27111 | -0.813333 | 2.70E-51 | -1.69E-46 |
| MS.gene059609 | MS.gene27111 | 0.832125 | 1.13E-55 | -1.69E-46 |
| MS.gene060011 | MS.gene27111 | 0.821267 | 4.42E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene27111 | -0.8226 | 2.17E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27111.t1 | MTR_3g115600 | 75.946 | 370 | 83 | 3 | 7 | 376 | 1 | 364 | 0.0 | 591 |
| MS.gene27111.t1 | MTR_5g006800 | 67.213 | 366 | 118 | 2 | 10 | 375 | 6 | 369 | 0.0 | 525 |
| MS.gene27111.t1 | MTR_5g006710 | 66.942 | 363 | 112 | 4 | 13 | 375 | 9 | 363 | 0.0 | 506 |
| MS.gene27111.t1 | MTR_5g006750 | 65.110 | 364 | 123 | 3 | 14 | 375 | 10 | 371 | 1.58e-178 | 501 |
| MS.gene27111.t1 | MTR_5g006780 | 66.209 | 364 | 119 | 3 | 14 | 375 | 10 | 371 | 2.41e-177 | 498 |
| MS.gene27111.t1 | MTR_5g006740 | 65.470 | 362 | 123 | 2 | 14 | 375 | 6 | 365 | 4.10e-177 | 497 |
| MS.gene27111.t1 | MTR_5g006670 | 65.746 | 362 | 116 | 4 | 14 | 375 | 6 | 359 | 2.15e-176 | 495 |
| MS.gene27111.t1 | MTR_5g008040 | 60.916 | 371 | 140 | 3 | 4 | 374 | 5 | 370 | 2.64e-168 | 475 |
| MS.gene27111.t1 | MTR_5g006740 | 62.431 | 362 | 117 | 3 | 14 | 375 | 6 | 348 | 6.92e-162 | 457 |
| MS.gene27111.t1 | MTR_5g006720 | 57.068 | 382 | 122 | 4 | 5 | 375 | 2 | 352 | 1.84e-151 | 431 |
| MS.gene27111.t1 | MTR_4g125470 | 52.022 | 371 | 165 | 4 | 16 | 374 | 19 | 388 | 6.00e-135 | 391 |
| MS.gene27111.t1 | MTR_5g006730 | 75.926 | 108 | 26 | 0 | 14 | 121 | 10 | 117 | 1.77e-55 | 179 |
| MS.gene27111.t1 | MTR_3g096570 | 64.557 | 79 | 24 | 2 | 175 | 252 | 3 | 78 | 3.98e-26 | 105 |
| MS.gene27111.t1 | MTR_3g096562 | 58.333 | 84 | 32 | 1 | 169 | 252 | 162 | 242 | 5.53e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27111.t1 | AT1G76690 | 64.171 | 374 | 128 | 3 | 6 | 377 | 4 | 373 | 0.0 | 508 |
| MS.gene27111.t1 | AT1G76680 | 65.229 | 371 | 123 | 3 | 9 | 377 | 5 | 371 | 0.0 | 508 |
| MS.gene27111.t1 | AT1G76680 | 61.111 | 396 | 123 | 4 | 9 | 377 | 5 | 396 | 2.54e-175 | 494 |
| MS.gene27111.t1 | AT1G09400 | 64.134 | 329 | 107 | 3 | 22 | 348 | 1 | 320 | 1.21e-156 | 443 |
| MS.gene27111.t1 | AT1G09400 | 65.056 | 269 | 83 | 3 | 82 | 348 | 2 | 261 | 1.55e-127 | 367 |
| MS.gene27111.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene27111.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene27111.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene27111.t1 | AT1G17990 | 58.781 | 279 | 102 | 4 | 8 | 285 | 1 | 267 | 4.28e-119 | 346 |
| MS.gene27111.t1 | AT1G18020 | 58.781 | 279 | 102 | 4 | 8 | 285 | 1 | 267 | 4.28e-119 | 346 |
| MS.gene27111.t1 | AT1G17990 | 56.272 | 279 | 101 | 5 | 8 | 285 | 1 | 259 | 1.43e-110 | 324 |
Find 107 sgRNAs with CRISPR-Local
Find 551 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGATAGTACTAGTTATTT+TGG | 0.113729 | 1.1:-131546 | None:intergenic |
| GTCCAAATGCCAGGCGTATT+TGG | 0.175163 | 1.1:-130544 | None:intergenic |
| ATACACACACGTACCATATT+TGG | 0.213055 | 1.1:-130662 | None:intergenic |
| CCTTTGAACACCTTCCTAAT+AGG | 0.291774 | 1.1:-131310 | None:intergenic |
| AATGGTCCTTGATGCCTATT+AGG | 0.301603 | 1.1:+131296 | MS.gene27111:CDS |
| GCTGCTGATCTAGTGGCTTA+TGG | 0.307172 | 1.1:+131394 | MS.gene27111:CDS |
| GGCTGAATCATTGAATCAAT+TGG | 0.309770 | 1.1:+131207 | MS.gene27111:CDS |
| AAAGGGACATTTATTGTTGC+TGG | 0.324243 | 1.1:+131328 | MS.gene27111:CDS |
| GACAGGATCATGCGTATAAA+AGG | 0.327954 | 1.1:-131497 | None:intergenic |
| GGATTTCATTTGTGCTTAAT+CGG | 0.331257 | 1.1:-130889 | None:intergenic |
| ACTAAGGGTGGCTTCTTGAT+TGG | 0.336328 | 1.1:+125519 | MS.gene27111:CDS |
| GGCTTGTTTGTGCATGATAT+TGG | 0.338072 | 1.1:-130809 | None:intergenic |
| GTGCGCCAAGTTCATGAAAA+AGG | 0.339105 | 1.1:+130598 | MS.gene27111:CDS |
| CTAAGGGTGGCTTCTTGATT+GGG | 0.342918 | 1.1:+125520 | MS.gene27111:CDS |
| TCCAAATGCCAGGCGTATTT+GGG | 0.350536 | 1.1:-130543 | None:intergenic |
| TATGACCTTGATCGCGTTAA+CGG | 0.364577 | 1.1:-125447 | None:intergenic |
| TTAAAGTTTCCCATCTTGTA+TGG | 0.364982 | 1.1:-125286 | None:intergenic |
| GACTCTGATCCTCAAGTATT+GGG | 0.377448 | 1.1:+131175 | MS.gene27111:CDS |
| CCATCTTGTATGGGGTGAGC+AGG | 0.381597 | 1.1:-125276 | None:intergenic |
| ACCCAAATACGCCTGGCATT+TGG | 0.384553 | 1.1:+130542 | MS.gene27111:CDS |
| TTGTTGCTGGAGGTTATGAT+AGG | 0.394121 | 1.1:+131341 | MS.gene27111:CDS |
| ATTAGCTGCAGCAGGATCAT+TGG | 0.397402 | 1.1:-130849 | None:intergenic |
| TTAAATTGTGTAACCATCCT+TGG | 0.400376 | 1.1:-131256 | None:intergenic |
| TCATGAACTTGGCGCACAAT+TGG | 0.406981 | 1.1:-130592 | None:intergenic |
| ACCATATTTGGATACTCTTC+CGG | 0.408173 | 1.1:-130650 | None:intergenic |
| GATATTGGAGGTTTACCTTC+AGG | 0.416474 | 1.1:-130794 | None:intergenic |
| TTCTTGATTGGGGAAGCATC+TGG | 0.424746 | 1.1:+125531 | MS.gene27111:CDS |
| GTATAAAAGGTAGTTGGATC+AGG | 0.427027 | 1.1:-131484 | None:intergenic |
| CTTGCTTGATCAATTTCTAA+AGG | 0.427817 | 1.1:+131000 | MS.gene27111:CDS |
| AACGACAGAGATGACGAGTA+TGG | 0.432506 | 1.1:+131031 | MS.gene27111:CDS |
| GCCGGAAGAGTATCCAAATA+TGG | 0.433682 | 1.1:+130649 | MS.gene27111:CDS |
| TATACGCATGATCCTGTCCT+TGG | 0.445992 | 1.1:+131502 | MS.gene27111:CDS |
| AATAGGCATCAAGGACCATT+TGG | 0.455116 | 1.1:-131293 | None:intergenic |
| TGGCATTTGGACAAGGGAAC+AGG | 0.464254 | 1.1:+130555 | MS.gene27111:CDS |
| CATCTTGTATGGGGTGAGCA+GGG | 0.471532 | 1.1:-125275 | None:intergenic |
| TTATTCTCAAAGATCAACTA+AGG | 0.473661 | 1.1:+125503 | MS.gene27111:CDS |
| GCTGAATCATTGAATCAATT+GGG | 0.474970 | 1.1:+131208 | MS.gene27111:CDS |
| AGAGATAGAAGGATGACTAA+AGG | 0.476048 | 1.1:+125220 | None:intergenic |
| GCAAGAAATGCCATGGAAGC+AGG | 0.479264 | 1.1:+130941 | MS.gene27111:CDS |
| GTAGAGATACATGGAGCTAA+TGG | 0.479754 | 1.1:+130974 | MS.gene27111:CDS |
| GTGCTTAATCGGCGAGGAGG+TGG | 0.494140 | 1.1:-130878 | None:intergenic |
| TTGGACAAGGGAACAGGTAG+AGG | 0.495054 | 1.1:+130561 | MS.gene27111:CDS |
| TAAAGTTTCCCATCTTGTAT+GGG | 0.501559 | 1.1:-125285 | None:intergenic |
| TATGATAGGAGTGAAGGAAA+TGG | 0.503378 | 1.1:+131355 | MS.gene27111:CDS |
| AGACTCTGATCCTCAAGTAT+TGG | 0.505390 | 1.1:+131174 | MS.gene27111:CDS |
| TCCATCAAAACCTGCTTCCA+TGG | 0.506298 | 1.1:-130951 | None:intergenic |
| TCAAGTATTGGGTATTTACA+TGG | 0.517434 | 1.1:+131186 | MS.gene27111:CDS |
| CCTGCTCACCCCATACAAGA+TGG | 0.518048 | 1.1:+125276 | MS.gene27111:CDS |
| TGTTCCCTTGTCCAAATGCC+AGG | 0.522788 | 1.1:-130553 | None:intergenic |
| GGATATTGATTAGCTGCAGC+AGG | 0.526559 | 1.1:-130857 | None:intergenic |
| CTTCCCACTTCGAGTGGTGA+AGG | 0.529500 | 1.1:+131078 | MS.gene27111:CDS |
| TTGGAGGTTTACCTTCAGGC+TGG | 0.534090 | 1.1:-130790 | None:intergenic |
| CCTATTAGGAAGGTGTTCAA+AGG | 0.534129 | 1.1:+131310 | MS.gene27111:CDS |
| TTAATACGACAGGATAGTGT+TGG | 0.537539 | 1.1:+125422 | MS.gene27111:intron |
| CACCTTCCTAATAGGCATCA+AGG | 0.537835 | 1.1:-131302 | None:intergenic |
| TTGGAGATATCTTTCTGAAG+AGG | 0.538385 | 1.1:-130830 | None:intergenic |
| TTGTTTGTGCATGATATTGG+AGG | 0.543879 | 1.1:-130806 | None:intergenic |
| CTATTAGGAAGGTGTTCAAA+GGG | 0.545620 | 1.1:+131311 | MS.gene27111:CDS |
| TCATGCGTATAAAAGGTAGT+TGG | 0.551693 | 1.1:-131490 | None:intergenic |
| AAAAGGTACCCAAATACGCC+TGG | 0.553805 | 1.1:+130535 | MS.gene27111:intron |
| ATCTTGTATGGGGTGAGCAG+GGG | 0.554437 | 1.1:-125274 | None:intergenic |
| TTTGATGGAGTAGAGATACA+TGG | 0.555461 | 1.1:+130965 | MS.gene27111:CDS |
| ATACGCCTGGCATTTGGACA+AGG | 0.556441 | 1.1:+130548 | MS.gene27111:CDS |
| TTCTGTCAACTTTGGCACGC+CGG | 0.558422 | 1.1:+130631 | MS.gene27111:CDS |
| ATGTGGTGCTGCTGATCTAG+TGG | 0.559206 | 1.1:+131387 | MS.gene27111:CDS |
| ACAAGTGTGACACCACCAAA+TGG | 0.560123 | 1.1:+131278 | MS.gene27111:CDS |
| TGGCGCCGTTAACGCGATCA+AGG | 0.570814 | 1.1:+125442 | MS.gene27111:CDS |
| GATGACTAAAGGAGAAGTAA+TGG | 0.579090 | 1.1:+125231 | None:intergenic |
| TAAGGGTGGCTTCTTGATTG+GGG | 0.580264 | 1.1:+125521 | MS.gene27111:CDS |
| GTCCTTGATGCCTATTAGGA+AGG | 0.582773 | 1.1:+131300 | MS.gene27111:CDS |
| ATGGATAATCACTATATCCA+AGG | 0.584629 | 1.1:-131519 | None:intergenic |
| TAATCACTATATCCAAGGAC+AGG | 0.584850 | 1.1:-131514 | None:intergenic |
| CTGCTCACCCCATACAAGAT+GGG | 0.585227 | 1.1:+125277 | MS.gene27111:CDS |
| AAAGTTTCCCATCTTGTATG+GGG | 0.586684 | 1.1:-125284 | None:intergenic |
| GAAACTTTAATCTATCTCAC+AGG | 0.587121 | 1.1:+125299 | MS.gene27111:CDS |
| AATTGCTGCAAGAAATGCCA+TGG | 0.589036 | 1.1:+130934 | MS.gene27111:CDS |
| AAAGGAGAAGTAATGGTCGA+TGG | 0.589838 | 1.1:+125238 | MS.gene27111:CDS |
| GGAGGTTATGATAGGAGTGA+AGG | 0.591271 | 1.1:+131349 | MS.gene27111:CDS |
| TCTCAAAGATCAACTAAGGG+TGG | 0.594762 | 1.1:+125507 | MS.gene27111:CDS |
| TTGTCGCTTCCCACTTCGAG+TGG | 0.596275 | 1.1:+131072 | MS.gene27111:CDS |
| ACTGCCTTCACCACTCGAAG+TGG | 0.598555 | 1.1:-131082 | None:intergenic |
| TGAAGTCATTGACAAGCATG+TGG | 0.600270 | 1.1:-130910 | None:intergenic |
| GGGACATTTATTGTTGCTGG+AGG | 0.600926 | 1.1:+131331 | MS.gene27111:CDS |
| AAGGCAGTAGCTGATGAGAT+CGG | 0.601265 | 1.1:+131097 | MS.gene27111:CDS |
| AGGCATCAAGGACCATTTGG+TGG | 0.602094 | 1.1:-131290 | None:intergenic |
| TGATGAGATCGGAGCTGACA+AGG | 0.615859 | 1.1:+131108 | MS.gene27111:CDS |
| TATAAAAGGTAGTTGGATCA+GGG | 0.616334 | 1.1:-131483 | None:intergenic |
| CAAGGGAACAGGTAGAGGCA+TGG | 0.618836 | 1.1:+130566 | MS.gene27111:CDS |
| TCATATGATTGAGCCAAGGA+TGG | 0.619695 | 1.1:+131243 | MS.gene27111:CDS |
| GGTGTGTCTAACACAGCACA+AGG | 0.629575 | 1.1:+125552 | MS.gene27111:CDS |
| TACGCCTGGCATTTGGACAA+GGG | 0.635846 | 1.1:+130549 | MS.gene27111:CDS |
| ATGTAAATACCCAATACTTG+AGG | 0.640485 | 1.1:-131184 | None:intergenic |
| TTTGTGCTTAATCGGCGAGG+AGG | 0.648362 | 1.1:-130881 | None:intergenic |
| TATTCTCAAAGATCAACTAA+GGG | 0.648427 | 1.1:+125504 | MS.gene27111:CDS |
| GATGTAGTATACCAGCCTGA+AGG | 0.656347 | 1.1:+130779 | MS.gene27111:intron |
| AAAAGGTAGTTGGATCAGGG+TGG | 0.658195 | 1.1:-131480 | None:intergenic |
| CTGCCTTCACCACTCGAAGT+GGG | 0.659608 | 1.1:-131081 | None:intergenic |
| GAGATCGGAGCTGACAAGGT+TGG | 0.665946 | 1.1:+131112 | MS.gene27111:CDS |
| TCATTTGTGCTTAATCGGCG+AGG | 0.670046 | 1.1:-130884 | None:intergenic |
| CAATCATTATAATCAGCGAA+AGG | 0.671533 | 1.1:-131148 | None:intergenic |
| GAATAATATGAAACAGCATG+AGG | 0.679009 | 1.1:-125486 | None:intergenic |
| GACAGAGATGACGAGTATGG+AGG | 0.692429 | 1.1:+131034 | MS.gene27111:CDS |
| TAAAAGATTTGAACTCAACG+TGG | 0.709690 | 1.1:+131447 | MS.gene27111:CDS |
| GAGCTGACAAGGTTGGTGTG+AGG | 0.727383 | 1.1:+131119 | MS.gene27111:CDS |
| ACTGTCATATGATTGAGCCA+AGG | 0.734502 | 1.1:+131239 | MS.gene27111:CDS |
| GGAAATGGTGCTATAGCATG+TGG | 0.744862 | 1.1:+131370 | MS.gene27111:CDS |
| GTGTGTCTAACACAGCACAA+GGG | 0.755183 | 1.1:+125553 | MS.gene27111:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATGATTAATAAAATTAC+CGG | - | chr1.1:125643-125662 | None:intergenic | 10.0% |
| !! | TAATAATATACACATATAAT+TGG | + | chr1.1:130757-130776 | MS.gene27111:intron | 10.0% |
| !! | AATTTATAAATTAATTCGAC+CGG | + | chr1.1:125621-125640 | MS.gene27111:intron | 15.0% |
| !! | CAAATAAAAGATAAAATTGA+CGG | - | chr1.1:129663-129682 | None:intergenic | 15.0% |
| !!! | TTAATTTAATTTAATACGAC+AGG | + | chr1.1:125412-125431 | MS.gene27111:intron | 15.0% |
| !! | AATATACGTAGAAGAAAAAT+TGG | - | chr1.1:126034-126053 | None:intergenic | 20.0% |
| !! | AATTCATAAACACAATTCTT+TGG | - | chr1.1:126070-126089 | None:intergenic | 20.0% |
| !! | ATAATAGTTTCAATACAATG+TGG | - | chr1.1:130442-130461 | None:intergenic | 20.0% |
| !! | ATATACGTAGAAGAAAAATT+GGG | - | chr1.1:126033-126052 | None:intergenic | 20.0% |
| !! | ATGAAATAAAATCCTTGTAA+TGG | - | chr1.1:130695-130714 | None:intergenic | 20.0% |
| !! | CTTTCTATACATAAAAATCA+TGG | + | chr1.1:128825-128844 | MS.gene27111:intron | 20.0% |
| !! | TAATAGTTTCAATACAATGT+GGG | - | chr1.1:130441-130460 | None:intergenic | 20.0% |
| !! | TGAAATAAAATCCTTGTAAT+GGG | - | chr1.1:130694-130713 | None:intergenic | 20.0% |
| !! | TTGATGAGTGAAAAAATTAA+TGG | + | chr1.1:125774-125793 | MS.gene27111:intron | 20.0% |
| !! | TTTAGCTAAAACAAATATAC+CGG | - | chr1.1:130101-130120 | None:intergenic | 20.0% |
| !!! | GAATATTTTAAATACCTATG+AGG | + | chr1.1:128392-128411 | MS.gene27111:intron | 20.0% |
| !!! | GTAAATCTTCAATTTTATTG+CGG | - | chr1.1:126409-126428 | None:intergenic | 20.0% |
| ! | AAACAACGCCAAAATTAATT+GGG | + | chr1.1:125739-125758 | MS.gene27111:intron | 25.0% |
| ! | AAAGAATGATAATACTGTTG+CGG | + | chr1.1:127486-127505 | MS.gene27111:intron | 25.0% |
| ! | AACATGGATGATCAAATAAA+AGG | + | chr1.1:130518-130537 | MS.gene27111:intron | 25.0% |
| ! | AAGAATCAATTTGAGTCTAT+TGG | - | chr1.1:127860-127879 | None:intergenic | 25.0% |
| ! | AATAAGATTTCTGACAACAA+TGG | + | chr1.1:127421-127440 | MS.gene27111:intron | 25.0% |
| ! | AATAATATTGTTCTCTCCTA+GGG | + | chr1.1:125901-125920 | MS.gene27111:intron | 25.0% |
| ! | CAAAAGAATAGGATAATGAT+CGG | - | chr1.1:126954-126973 | None:intergenic | 25.0% |
| ! | CAATTATCTAATCAATTCAC+AGG | + | chr1.1:126653-126672 | MS.gene27111:intron | 25.0% |
| ! | CATAAAATGAATTACTTCGA+TGG | - | chr1.1:127953-127972 | None:intergenic | 25.0% |
| ! | CTATAAAAAATCTCAGACTT+CGG | - | chr1.1:128444-128463 | None:intergenic | 25.0% |
| ! | CTATACATAAAAATCATGGT+GGG | + | chr1.1:128829-128848 | MS.gene27111:intron | 25.0% |
| ! | GGGATAACATAATAAATAGT+GGG | - | chr1.1:130421-130440 | None:intergenic | 25.0% |
| ! | TACAATATTGCAGTTAAATG+AGG | - | chr1.1:126510-126529 | None:intergenic | 25.0% |
| ! | TATACGTAGAAGAAAAATTG+GGG | - | chr1.1:126032-126051 | None:intergenic | 25.0% |
| ! | TATTCTCAAAGATCAACTAA+GGG | + | chr1.1:125504-125523 | MS.gene27111:CDS | 25.0% |
| ! | TCACTTAAAAATAAGAGATC+CGG | - | chr1.1:126374-126393 | None:intergenic | 25.0% |
| ! | TCTATACATAAAAATCATGG+TGG | + | chr1.1:128828-128847 | MS.gene27111:intron | 25.0% |
| ! | TGGGATAACATAATAAATAG+TGG | - | chr1.1:130422-130441 | None:intergenic | 25.0% |
| ! | TGTATATTTATCCCATTACA+AGG | + | chr1.1:130680-130699 | MS.gene27111:intron | 25.0% |
| ! | TTATAAATGTAATGTAGACG+CGG | + | chr1.1:130021-130040 | MS.gene27111:intron | 25.0% |
| ! | TTATCCAAAATGGATCTATT+AGG | - | chr1.1:127919-127938 | None:intergenic | 25.0% |
| ! | TTATTCTCAAAGATCAACTA+AGG | + | chr1.1:125503-125522 | MS.gene27111:CDS | 25.0% |
| !! | AAAGGATGATGAATTCTTTT+TGG | + | chr1.1:128748-128767 | MS.gene27111:intron | 25.0% |
| !! | ACAGAATTTGGAACTATTAT+CGG | + | chr1.1:130280-130299 | MS.gene27111:intron | 25.0% |
| !! | CAAAAGTAAAGCATTTGTTA+TGG | + | chr1.1:129438-129457 | MS.gene27111:intron | 25.0% |
| !! | CATAACAAATGCTTTACTTT+TGG | - | chr1.1:129440-129459 | None:intergenic | 25.0% |
| !! | TAACTCGATGAAATAGTTTT+TGG | - | chr1.1:127461-127480 | None:intergenic | 25.0% |
| !! | TCTAAATTTGCTTCCAAAAA+GGG | + | chr1.1:126231-126250 | MS.gene27111:intron | 25.0% |
| !! | TTTAAATCTGGAATTGCATT+CGG | - | chr1.1:126329-126348 | None:intergenic | 25.0% |
| !!! | ATTTTTTCACTCATCAACAA+TGG | - | chr1.1:125771-125790 | None:intergenic | 25.0% |
| !!! | TATTTTAAATACCTATGAGG+TGG | + | chr1.1:128395-128414 | MS.gene27111:intron | 25.0% |
| !!! | TCTTGTTTCTAGAATTTTCA+AGG | + | chr1.1:128932-128951 | MS.gene27111:intron | 25.0% |
| !!! | TGTGTGTGTTTTTTTCTTTT+TGG | + | chr1.1:125364-125383 | MS.gene27111:intron | 25.0% |
| AAAGTTCATTGGTATAGAGA+CGG | + | chr1.1:127313-127332 | MS.gene27111:intron | 30.0% | |
| AAATTCTTCCTTAGTGAAAG+GGG | - | chr1.1:127572-127591 | None:intergenic | 30.0% | |
| AACATAGGAACCTCAAAATA+TGG | + | chr1.1:129744-129763 | MS.gene27111:intron | 30.0% | |
| AACATTGCACTTATTCCTAA+AGG | + | chr1.1:127754-127773 | MS.gene27111:intron | 30.0% | |
| AAGGAGGTTATGATAAAGAT+GGG | + | chr1.1:128060-128079 | MS.gene27111:intron | 30.0% | |
| AATTGTCAAGAACAGATTGT+GGG | + | chr1.1:127229-127248 | MS.gene27111:intron | 30.0% | |
| ACATAGGAACCTCAAAATAT+GGG | + | chr1.1:129745-129764 | MS.gene27111:intron | 30.0% | |
| ACGAATACAAATTCCAATAC+CGG | - | chr1.1:130071-130090 | None:intergenic | 30.0% | |
| ACTTATGATTACATGGTAGT+TGG | + | chr1.1:126117-126136 | MS.gene27111:intron | 30.0% | |
| AGAGCTAATTGGTTGATTAA+TGG | + | chr1.1:126743-126762 | MS.gene27111:intron | 30.0% | |
| ATCCTTGAATTATGTTGTCA+TGG | + | chr1.1:126155-126174 | MS.gene27111:intron | 30.0% | |
| ATCCTTGATATAAGCAAATG+TGG | - | chr1.1:128583-128602 | None:intergenic | 30.0% | |
| ATGGATAATCACTATATCCA+AGG | - | chr1.1:131522-131541 | None:intergenic | 30.0% | |
| ATGTAAATACCCAATACTTG+AGG | - | chr1.1:131187-131206 | None:intergenic | 30.0% | |
| ATTGATGCAATAAGAGTAGT+TGG | - | chr1.1:128726-128745 | None:intergenic | 30.0% | |
| CAAACAACGCCAAAATTAAT+TGG | + | chr1.1:125738-125757 | MS.gene27111:intron | 30.0% | |
| CAATAACATCAACAGAAATG+TGG | - | chr1.1:126547-126566 | None:intergenic | 30.0% | |
| CAATAATATTGTTCTCTCCT+AGG | + | chr1.1:125900-125919 | MS.gene27111:intron | 30.0% | |
| CAATCATTATAATCAGCGAA+AGG | - | chr1.1:131151-131170 | None:intergenic | 30.0% | |
| CCAAAGTTGACAGAAAAATA+TGG | - | chr1.1:130626-130645 | None:intergenic | 30.0% | |
| CTAGGAGAGAACAATATTAT+TGG | - | chr1.1:125902-125921 | None:intergenic | 30.0% | |
| CTCAGATATCAAATTGTGAA+CGG | - | chr1.1:129177-129196 | None:intergenic | 30.0% | |
| CTTGCTTGATCAATTTCTAA+AGG | + | chr1.1:131000-131019 | MS.gene27111:CDS | 30.0% | |
| GAAACTTTAATCTATCTCAC+AGG | + | chr1.1:125299-125318 | MS.gene27111:CDS | 30.0% | |
| GAAATTCTTCCTTAGTGAAA+GGG | - | chr1.1:127573-127592 | None:intergenic | 30.0% | |
| GAACTTCTGTTCAAAAGAAT+AGG | - | chr1.1:126965-126984 | None:intergenic | 30.0% | |
| GAAGATTTACGTTATTTGCT+TGG | + | chr1.1:126419-126438 | MS.gene27111:intron | 30.0% | |
| GAATAATATGAAACAGCATG+AGG | - | chr1.1:125489-125508 | None:intergenic | 30.0% | |
| GAGCTAATTGGTTGATTAAT+GGG | + | chr1.1:126744-126763 | MS.gene27111:intron | 30.0% | |
| GAGTGAAAAAATTAATGGAG+CGG | + | chr1.1:125779-125798 | MS.gene27111:intron | 30.0% | |
| GATGTTATTGATGTTGTTCA+TGG | + | chr1.1:126557-126576 | MS.gene27111:intron | 30.0% | |
| GCATTAAGAAAAGACTTAGA+CGG | - | chr1.1:128969-128988 | None:intergenic | 30.0% | |
| GCTGAATCATTGAATCAATT+GGG | + | chr1.1:131208-131227 | MS.gene27111:CDS | 30.0% | |
| GGATTTCATTTGTGCTTAAT+CGG | - | chr1.1:130892-130911 | None:intergenic | 30.0% | |
| TAAAAGATTTGAACTCAACG+TGG | + | chr1.1:131447-131466 | MS.gene27111:CDS | 30.0% | |
| TAAAGTTTCCCATCTTGTAT+GGG | - | chr1.1:125288-125307 | None:intergenic | 30.0% | |
| TACCATGACAACATAATTCA+AGG | - | chr1.1:126160-126179 | None:intergenic | 30.0% | |
| TATAAAAGGTAGTTGGATCA+GGG | - | chr1.1:131486-131505 | None:intergenic | 30.0% | |
| TGGGTACTAGTAAGTATTTA+GGG | + | chr1.1:128526-128545 | MS.gene27111:intron | 30.0% | |
| TGTGGCAAAGAATTAATTCT+TGG | + | chr1.1:128607-128626 | MS.gene27111:intron | 30.0% | |
| TTAAAGTTTCCCATCTTGTA+TGG | - | chr1.1:125289-125308 | None:intergenic | 30.0% | |
| TTAAATTGTGTAACCATCCT+TGG | - | chr1.1:131259-131278 | None:intergenic | 30.0% | |
| TTAATTCTTGGAGTAGTAAG+TGG | + | chr1.1:128619-128638 | MS.gene27111:intron | 30.0% | |
| TTGGGTACTAGTAAGTATTT+AGG | + | chr1.1:128525-128544 | MS.gene27111:intron | 30.0% | |
| TTTATGAAGACGAAAACGAA+AGG | + | chr1.1:127967-127986 | MS.gene27111:intron | 30.0% | |
| TTTGCTTGAAAATTTGACTC+CGG | + | chr1.1:129679-129698 | MS.gene27111:intron | 30.0% | |
| ! | AAATACTTTTCCAATTACCC+GGG | - | chr1.1:129400-129419 | None:intergenic | 30.0% |
| ! | ACGTTGAGTTCAAATCTTTT+AGG | - | chr1.1:131448-131467 | None:intergenic | 30.0% |
| ! | ATTCATGATCAATCCCTTTT+TGG | - | chr1.1:126247-126266 | None:intergenic | 30.0% |
| ! | ATTCTAGAAACAAGAGATTG+AGG | - | chr1.1:128927-128946 | None:intergenic | 30.0% |
| ! | CAAATACTTTTCCAATTACC+CGG | - | chr1.1:129401-129420 | None:intergenic | 30.0% |
| ! | CATTTACGGTTCTTTTTGTT+TGG | + | chr1.1:126190-126209 | MS.gene27111:intron | 30.0% |
| ! | CCATATTTTTCTGTCAACTT+TGG | + | chr1.1:130623-130642 | MS.gene27111:CDS | 30.0% |
| ! | CTCTAAATTTGCTTCCAAAA+AGG | + | chr1.1:126230-126249 | MS.gene27111:intron | 30.0% |
| ! | GGAATTTGCCCAATTAATTT+TGG | - | chr1.1:125750-125769 | None:intergenic | 30.0% |
| ! | TCTATTGATGGTAACATTGA+GGG | + | chr1.1:129128-129147 | MS.gene27111:intron | 30.0% |
| ! | TTAAATCTGGAATTGCATTC+GGG | - | chr1.1:126328-126347 | None:intergenic | 30.0% |
| ! | TTCTATTGATGGTAACATTG+AGG | + | chr1.1:129127-129146 | MS.gene27111:intron | 30.0% |
| ! | TTTTCAGAGATTGTTGCAAT+TGG | + | chr1.1:127692-127711 | MS.gene27111:intron | 30.0% |
| !! | AAAATTAATGGAGCGGATTT+TGG | + | chr1.1:125786-125805 | MS.gene27111:intron | 30.0% |
| !! | AACAAATGCTTTACTTTTGG+CGG | - | chr1.1:129437-129456 | None:intergenic | 30.0% |
| !! | AATGGATTGGGAATATTTGA+AGG | + | chr1.1:128041-128060 | MS.gene27111:intron | 30.0% |
| !! | ATGATGAATTCTTTTTGGTG+GGG | + | chr1.1:128753-128772 | MS.gene27111:intron | 30.0% |
| !! | CAATTAATTTTGGCGTTGTT+TGG | - | chr1.1:125740-125759 | None:intergenic | 30.0% |
| !! | GATGATGAATTCTTTTTGGT+GGG | + | chr1.1:128752-128771 | MS.gene27111:intron | 30.0% |
| !! | GCTCTATAAGCTTATTTCTA+AGG | + | chr1.1:127828-127847 | MS.gene27111:intron | 30.0% |
| !! | TAATCAACCAATTAGCTCTA+AGG | - | chr1.1:126742-126761 | None:intergenic | 30.0% |
| !! | TCAAATCTTTTAGGAAGATC+TGG | - | chr1.1:131439-131458 | None:intergenic | 30.0% |
| !! | TCAAGTATTGGGTATTTACA+TGG | + | chr1.1:131186-131205 | MS.gene27111:CDS | 30.0% |
| !!! | ACGAGAATGCTTTTTTAACA+TGG | + | chr1.1:130502-130521 | MS.gene27111:intron | 30.0% |
| !!! | AGTCTGAGATTTTTTATAGC+AGG | + | chr1.1:128445-128464 | MS.gene27111:intron | 30.0% |
| !!! | GCATTCTCGTTTTTTTTTGA+AGG | - | chr1.1:130492-130511 | None:intergenic | 30.0% |
| AAAGGGACATTTATTGTTGC+TGG | + | chr1.1:131328-131347 | MS.gene27111:CDS | 35.0% | |
| AAAGGTTTGGCACAATTTGT+TGG | + | chr1.1:129711-129730 | MS.gene27111:intron | 35.0% | |
| AAAGTTTCCCATCTTGTATG+GGG | - | chr1.1:125287-125306 | None:intergenic | 35.0% | |
| AACAACAAGCTCTCACAATT+GGG | - | chr1.1:125941-125960 | None:intergenic | 35.0% | |
| AACCATCGCATTATCCAAAA+TGG | - | chr1.1:127929-127948 | None:intergenic | 35.0% | |
| AAGAAAAATTGGGGACTAAC+CGG | - | chr1.1:126023-126042 | None:intergenic | 35.0% | |
| AATCATCAGCAAACAAAAGG+TGG | - | chr1.1:128326-128345 | None:intergenic | 35.0% | |
| AATCTGTTCTTGACAATTCC+CGG | - | chr1.1:127227-127246 | None:intergenic | 35.0% | |
| ACCATATTTGGATACTCTTC+CGG | - | chr1.1:130653-130672 | None:intergenic | 35.0% | |
| ACGCTGAAATCTATCTGAAA+AGG | - | chr1.1:130047-130066 | None:intergenic | 35.0% | |
| ACTACAGCGTTCTTGTAAAT+GGG | + | chr1.1:128133-128152 | MS.gene27111:intron | 35.0% | |
| AGAGAGAAATGGTTGTTACT+CGG | + | chr1.1:129316-129335 | MS.gene27111:intron | 35.0% | |
| AGATTCTGTAATGTAGCTGT+TGG | - | chr1.1:126917-126936 | None:intergenic | 35.0% | |
| AGCAATCATCAGCAAACAAA+AGG | - | chr1.1:128329-128348 | None:intergenic | 35.0% | |
| ATACACACACGTACCATATT+TGG | - | chr1.1:130665-130684 | None:intergenic | 35.0% | |
| ATAGGATAATGATCGGATGA+CGG | - | chr1.1:126947-126966 | None:intergenic | 35.0% | |
| ATCATCAGCAAACAAAAGGT+GGG | - | chr1.1:128325-128344 | None:intergenic | 35.0% | |
| ATGAATATGATTACGTGTCG+AGG | + | chr1.1:126261-126280 | MS.gene27111:intron | 35.0% | |
| ATGTTCGTCATATTCAAGTC+TGG | - | chr1.1:127739-127758 | None:intergenic | 35.0% | |
| ATGTTGGACCAATTATTCCA+GGG | + | chr1.1:128160-128179 | MS.gene27111:intron | 35.0% | |
| ATTCGAATAACAGGTGGTTT+AGG | - | chr1.1:129562-129581 | None:intergenic | 35.0% | |
| ATTTCCTGAGTTATCTTCGA+GGG | - | chr1.1:127404-127423 | None:intergenic | 35.0% | |
| ATTTGGAAAGCAGAGAGAAA+TGG | + | chr1.1:129305-129324 | MS.gene27111:intron | 35.0% | |
| CAAATATATCCGGTTGCTAT+TGG | + | chr1.1:130136-130155 | MS.gene27111:intron | 35.0% | |
| CACAATTTGATATCTGAGCA+TGG | + | chr1.1:129179-129198 | MS.gene27111:intron | 35.0% | |
| CATTCCTAATCAAGGATGAA+AGG | - | chr1.1:128245-128264 | None:intergenic | 35.0% | |
| CATTTATAACGTCCACTACT+AGG | - | chr1.1:130010-130029 | None:intergenic | 35.0% | |
| CGAAATTCTTCCTTAGTGAA+AGG | - | chr1.1:127574-127593 | None:intergenic | 35.0% | |
| CGAACTAGGTACTTTAAATC+TGG | - | chr1.1:126341-126360 | None:intergenic | 35.0% | |
| CTAAAAACCTGTCGAATAAG+TGG | - | chr1.1:129221-129240 | None:intergenic | 35.0% | |
| CTCTTATTGCATCAATCGAA+AGG | + | chr1.1:128730-128749 | MS.gene27111:intron | 35.0% | |
| CTCTTCATTCACAAACTCAA+GGG | + | chr1.1:130324-130343 | MS.gene27111:intron | 35.0% | |
| GAAGGAGGTTATGATAAAGA+TGG | + | chr1.1:128059-128078 | MS.gene27111:intron | 35.0% | |
| GAATTATGTTGTCATGGTAG+TGG | + | chr1.1:126161-126180 | MS.gene27111:intron | 35.0% | |
| GAATTGTCAAGAACAGATTG+TGG | + | chr1.1:127228-127247 | MS.gene27111:intron | 35.0% | |
| GATTCTGTAATGTAGCTGTT+GGG | - | chr1.1:126916-126935 | None:intergenic | 35.0% | |
| GCACAGATAATAAAGAGGTA+CGG | - | chr1.1:128216-128235 | None:intergenic | 35.0% | |
| GCAGTTTGGTCAAATATATC+CGG | + | chr1.1:130126-130145 | MS.gene27111:intron | 35.0% | |
| GCCAAACTTGAATGGAAAAA+GGG | - | chr1.1:129586-129605 | None:intergenic | 35.0% | |
| GGCTGAATCATTGAATCAAT+TGG | + | chr1.1:131207-131226 | MS.gene27111:CDS | 35.0% | |
| GTACCTCTTTATTATCTGTG+CGG | + | chr1.1:128215-128234 | MS.gene27111:intron | 35.0% | |
| GTATAAAAGGTAGTTGGATC+AGG | - | chr1.1:131487-131506 | None:intergenic | 35.0% | |
| GTCTCTATCATGCTATTCAA+TGG | + | chr1.1:130170-130189 | MS.gene27111:intron | 35.0% | |
| GTGGTTTAGGTCTTCAAAAT+TGG | - | chr1.1:129549-129568 | None:intergenic | 35.0% | |
| GTTGGAGTTTATGGAAACAT+AGG | + | chr1.1:129729-129748 | MS.gene27111:intron | 35.0% | |
| TAACTCACAAGTCTCTATGA+AGG | + | chr1.1:127777-127796 | MS.gene27111:intron | 35.0% | |
| TAAGCCGGATATTGTGAATT+TGG | - | chr1.1:127198-127217 | None:intergenic | 35.0% | |
| TAATCACTATATCCAAGGAC+AGG | - | chr1.1:131517-131536 | None:intergenic | 35.0% | |
| TACATGGTAGTTGGATATAG+TGG | + | chr1.1:126126-126145 | MS.gene27111:intron | 35.0% | |
| TATGATAGGAGTGAAGGAAA+TGG | + | chr1.1:131355-131374 | MS.gene27111:CDS | 35.0% | |
| TATTTCCTGAGTTATCTTCG+AGG | - | chr1.1:127405-127424 | None:intergenic | 35.0% | |
| TCATGCGTATAAAAGGTAGT+TGG | - | chr1.1:131493-131512 | None:intergenic | 35.0% | |
| TCTAATGGTGCTTCTATTGA+TGG | + | chr1.1:129116-129135 | MS.gene27111:intron | 35.0% | |
| TCTCGTGACTTATGATTACA+TGG | + | chr1.1:126110-126129 | MS.gene27111:intron | 35.0% | |
| TGATATGATGGTATGGAGTA+AGG | + | chr1.1:127129-127148 | MS.gene27111:intron | 35.0% | |
| TGCCAAACTTGAATGGAAAA+AGG | - | chr1.1:129587-129606 | None:intergenic | 35.0% | |
| TGCCACATTTGCTTATATCA+AGG | + | chr1.1:128578-128597 | MS.gene27111:intron | 35.0% | |
| TGGTGATTTCAACGATATCA+TGG | + | chr1.1:126691-126710 | MS.gene27111:intron | 35.0% | |
| TGTCTCAAGACGATACTTAT+TGG | + | chr1.1:127278-127297 | MS.gene27111:intron | 35.0% | |
| TTAATACGACAGGATAGTGT+TGG | + | chr1.1:125422-125441 | MS.gene27111:intron | 35.0% | |
| TTGTTTGTGCATGATATTGG+AGG | - | chr1.1:130809-130828 | None:intergenic | 35.0% | |
| TTTGATGGAGTAGAGATACA+TGG | + | chr1.1:130965-130984 | MS.gene27111:CDS | 35.0% | |
| ! | ATCCATTTTGGATAATGCGA+TGG | + | chr1.1:127924-127943 | MS.gene27111:intron | 35.0% |
| ! | CGTTCCTAATAGATCCATTT+TGG | + | chr1.1:127912-127931 | MS.gene27111:intron | 35.0% |
| ! | GGATGATGAATTCTTTTTGG+TGG | + | chr1.1:128751-128770 | MS.gene27111:intron | 35.0% |
| ! | TCTTTTCTTAATGCCACCAT+CGG | + | chr1.1:128975-128994 | MS.gene27111:intron | 35.0% |
| ! | TGTTTTTCTGTTGATCGTAG+TGG | + | chr1.1:126452-126471 | MS.gene27111:intron | 35.0% |
| ! | TTGGAGATATCTTTCTGAAG+AGG | - | chr1.1:130833-130852 | None:intergenic | 35.0% |
| ! | TTTGTTATGGCGTATGTGTA+GGG | + | chr1.1:129451-129470 | MS.gene27111:intron | 35.0% |
| !! | AAAAAGGGCATTCGAATAAC+AGG | - | chr1.1:129571-129590 | None:intergenic | 35.0% |
| !! | ACAAATGCTTTACTTTTGGC+GGG | - | chr1.1:129436-129455 | None:intergenic | 35.0% |
| !! | ATTGGTTGATTAATGGGTTC+AGG | + | chr1.1:126750-126769 | MS.gene27111:intron | 35.0% |
| !! | ATTTGTTATGGCGTATGTGT+AGG | + | chr1.1:129450-129469 | MS.gene27111:intron | 35.0% |
| !! | CGGGTAATTGGAAAAGTATT+TGG | + | chr1.1:129399-129418 | MS.gene27111:intron | 35.0% |
| !! | CTATTAGGAAGGTGTTCAAA+GGG | + | chr1.1:131311-131330 | MS.gene27111:CDS | 35.0% |
| !! | GAGTAGTTGGTAATTGAAAC+AGG | - | chr1.1:128713-128732 | None:intergenic | 35.0% |
| !! | GCACAATTTGTTGGAGTTTA+TGG | + | chr1.1:129720-129739 | MS.gene27111:intron | 35.0% |
| !! | GGTTCTTTTTGTTTGGATGT+TGG | + | chr1.1:126197-126216 | MS.gene27111:intron | 35.0% |
| !! | TCTCATCTGCTTTGAAGAAA+AGG | - | chr1.1:128353-128372 | None:intergenic | 35.0% |
| !! | TTCGTAACTTGTTCAAACAG+AGG | - | chr1.1:129275-129294 | None:intergenic | 35.0% |
| !!! | GGTAGTGGAGTTTTCATTTA+CGG | + | chr1.1:126176-126195 | MS.gene27111:intron | 35.0% |
| AAAGGAGAAGTAATGGTCGA+TGG | + | chr1.1:125238-125257 | MS.gene27111:CDS | 40.0% | |
| AAATCACCAAGAATGCACCA+TGG | - | chr1.1:126680-126699 | None:intergenic | 40.0% | |
| AACAGGCTCATAACGTAAGA+CGG | - | chr1.1:128696-128715 | None:intergenic | 40.0% | |
| AACCAAACCTGTTCTGCTAA+GGG | - | chr1.1:129969-129988 | None:intergenic | 40.0% | |
| AAGCCTATGACAGAATGGAT+TGG | + | chr1.1:128028-128047 | MS.gene27111:intron | 40.0% | |
| AAGGCCTTTCATCCTTGATT+AGG | + | chr1.1:128238-128257 | MS.gene27111:intron | 40.0% | |
| AAGTTGCGTTTATGGAGATG+AGG | - | chr1.1:126998-127017 | None:intergenic | 40.0% | |
| AATAGGCATCAAGGACCATT+TGG | - | chr1.1:131296-131315 | None:intergenic | 40.0% | |
| AATATCCGGCTTAACAGTTC+CGG | + | chr1.1:127205-127224 | MS.gene27111:intron | 40.0% | |
| AATGGTCCTTGATGCCTATT+AGG | + | chr1.1:131296-131315 | MS.gene27111:CDS | 40.0% | |
| AATTGCTGCAAGAAATGCCA+TGG | + | chr1.1:130934-130953 | MS.gene27111:CDS | 40.0% | |
| ACGTGAGGTCATGATTAAGT+CGG | + | chr1.1:128656-128675 | MS.gene27111:intron | 40.0% | |
| ACTGTCATATGATTGAGCCA+AGG | + | chr1.1:131239-131258 | MS.gene27111:CDS | 40.0% | |
| AGACTCTGATCCTCAAGTAT+TGG | + | chr1.1:131174-131193 | MS.gene27111:CDS | 40.0% | |
| AGAGTTCGCTTGCAAGATAA+GGG | + | chr1.1:129488-129507 | MS.gene27111:intron | 40.0% | |
| AGGATTTCGTGACTGATGTT+TGG | + | chr1.1:127056-127075 | MS.gene27111:intron | 40.0% | |
| ATAATCCGAGTTATGTGTGG+CGG | + | chr1.1:129000-129019 | MS.gene27111:intron | 40.0% | |
| ATAGTGCACACGTAGTTGAT+AGG | + | chr1.1:129783-129802 | MS.gene27111:intron | 40.0% | |
| ATCCTTGATTAGGAATGCTG+AGG | + | chr1.1:128248-128267 | MS.gene27111:intron | 40.0% | |
| ATCTTATTCCCCTTGTGTCT+TGG | + | chr1.1:125997-126016 | MS.gene27111:intron | 40.0% | |
| ATTTGTATTCGTGACGAGTC+CGG | + | chr1.1:130079-130098 | MS.gene27111:intron | 40.0% | |
| CACAAGTCTCTATGAAGGAT+TGG | + | chr1.1:127782-127801 | MS.gene27111:intron | 40.0% | |
| CAGAGATTGTTGCAATTGGT+TGG | + | chr1.1:127696-127715 | MS.gene27111:intron | 40.0% | |
| CATGTTGGACCAATTATTCC+AGG | + | chr1.1:128159-128178 | MS.gene27111:intron | 40.0% | |
| CCAAACCTTTGCTGAATATC+CGG | - | chr1.1:129701-129720 | None:intergenic | 40.0% | |
| CCTCTTCATTCACAAACTCA+AGG | + | chr1.1:130323-130342 | MS.gene27111:intron | 40.0% | |
| CCTTGAGTTTGTGAATGAAG+AGG | - | chr1.1:130326-130345 | None:intergenic | 40.0% | |
| CCTTTGAACACCTTCCTAAT+AGG | - | chr1.1:131313-131332 | None:intergenic | 40.0% | |
| CTAATCAATTCACAGGACCA+TGG | + | chr1.1:126660-126679 | MS.gene27111:intron | 40.0% | |
| CTACAGCGTTCTTGTAAATG+GGG | + | chr1.1:128134-128153 | MS.gene27111:intron | 40.0% | |
| CTACGAAAATGCGTGGTATA+CGG | + | chr1.1:127021-127040 | MS.gene27111:intron | 40.0% | |
| CTCAAGACGATACTTATTGG+CGG | + | chr1.1:127281-127300 | MS.gene27111:intron | 40.0% | |
| CTCTTTATTATCTGTGCGGA+AGG | + | chr1.1:128219-128238 | MS.gene27111:intron | 40.0% | |
| CTTATATCAAGGATCGTGTG+TGG | + | chr1.1:128589-128608 | MS.gene27111:intron | 40.0% | |
| CTTCCGCACAGATAATAAAG+AGG | - | chr1.1:128221-128240 | None:intergenic | 40.0% | |
| CTTGTAAATGGGGAACATGT+TGG | + | chr1.1:128144-128163 | MS.gene27111:intron | 40.0% | |
| GAACAACAAGCTCTCACAAT+TGG | - | chr1.1:125942-125961 | None:intergenic | 40.0% | |
| GACAGGATCATGCGTATAAA+AGG | - | chr1.1:131500-131519 | None:intergenic | 40.0% | |
| GACTACAGCGTTCTTGTAAA+TGG | + | chr1.1:128132-128151 | MS.gene27111:intron | 40.0% | |
| GACTCTGATCCTCAAGTATT+GGG | + | chr1.1:131175-131194 | MS.gene27111:CDS | 40.0% | |
| GAGACTTGTGAGTTACCTTT+AGG | - | chr1.1:127772-127791 | None:intergenic | 40.0% | |
| GATATTGGAGGTTTACCTTC+AGG | - | chr1.1:130797-130816 | None:intergenic | 40.0% | |
| GGAAAATGAGCCTGATAAGT+TGG | + | chr1.1:126282-126301 | MS.gene27111:intron | 40.0% | |
| GGATTGGGAATATTTGAAGG+AGG | + | chr1.1:128044-128063 | MS.gene27111:intron | 40.0% | |
| GTAGAGATACATGGAGCTAA+TGG | + | chr1.1:130974-130993 | MS.gene27111:CDS | 40.0% | |
| GTAGGAACCTTAGAGCTAAT+TGG | + | chr1.1:126732-126751 | MS.gene27111:intron | 40.0% | |
| GTCGCCAAATTCACAATATC+CGG | + | chr1.1:127191-127210 | MS.gene27111:intron | 40.0% | |
| GTTGCAATTGGTTGGATACA+GGG | + | chr1.1:127704-127723 | MS.gene27111:intron | 40.0% | |
| TAACCAAACCTGTTCTGCTA+AGG | - | chr1.1:129970-129989 | None:intergenic | 40.0% | |
| TACATATGCTCCAGAACTGT+TGG | - | chr1.1:127663-127682 | None:intergenic | 40.0% | |
| TACTAGTACCCAAAACAGCT+CGG | - | chr1.1:128518-128537 | None:intergenic | 40.0% | |
| TAGAGTTCGCTTGCAAGATA+AGG | + | chr1.1:129487-129506 | MS.gene27111:intron | 40.0% | |
| TAGCAAAGCCTATGACAGAA+TGG | + | chr1.1:128023-128042 | MS.gene27111:intron | 40.0% | |
| TAGGAACCTCAAAATATGGG+AGG | + | chr1.1:129748-129767 | MS.gene27111:intron | 40.0% | |
| TAGGATAATGATCGGATGAC+GGG | - | chr1.1:126946-126965 | None:intergenic | 40.0% | |
| TATGACCTTGATCGCGTTAA+CGG | - | chr1.1:125450-125469 | None:intergenic | 40.0% | |
| TCAGATAGATTTCAGCGTAC+CGG | + | chr1.1:130049-130068 | MS.gene27111:intron | 40.0% | |
| TCATATGATTGAGCCAAGGA+TGG | + | chr1.1:131243-131262 | MS.gene27111:CDS | 40.0% | |
| TCTCAAAGATCAACTAAGGG+TGG | + | chr1.1:125507-125526 | MS.gene27111:CDS | 40.0% | |
| TGAAGTCATTGACAAGCATG+TGG | - | chr1.1:130913-130932 | None:intergenic | 40.0% | |
| TGACAACAATGGTATGTGTG+AGG | + | chr1.1:127432-127451 | MS.gene27111:intron | 40.0% | |
| TGGTAGTTGGATATAGTGGT+TGG | + | chr1.1:126130-126149 | MS.gene27111:intron | 40.0% | |
| TGTTGCAATTGGTTGGATAC+AGG | + | chr1.1:127703-127722 | MS.gene27111:intron | 40.0% | |
| TTACGAATGATCGCCTCATT+TGG | + | chr1.1:129288-129307 | MS.gene27111:intron | 40.0% | |
| TTAGGGATGCCTTCAATGAT+TGG | + | chr1.1:128543-128562 | MS.gene27111:intron | 40.0% | |
| TTATAACGTCCACTACTAGG+CGG | - | chr1.1:130007-130026 | None:intergenic | 40.0% | |
| TTCAAAATTGGAATCGCAGC+TGG | - | chr1.1:129537-129556 | None:intergenic | 40.0% | |
| TTCACGTGGTTCAAAAGCTT+AGG | + | chr1.1:126824-126843 | MS.gene27111:intron | 40.0% | |
| TTCCCAATCCATTCTGTCAT+AGG | - | chr1.1:128034-128053 | None:intergenic | 40.0% | |
| TTCGTCATATTCAAGTCTGG+CGG | - | chr1.1:127736-127755 | None:intergenic | 40.0% | |
| TTCTCTCTGCTTTCCAAATG+AGG | - | chr1.1:129304-129323 | None:intergenic | 40.0% | |
| TTGATGTTGTTCATGGCTCA+TGG | + | chr1.1:126564-126583 | MS.gene27111:intron | 40.0% | |
| TTGTTATGGCGTATGTGTAG+GGG | + | chr1.1:129452-129471 | MS.gene27111:intron | 40.0% | |
| TTGTTGCTGGAGGTTATGAT+AGG | + | chr1.1:131341-131360 | MS.gene27111:CDS | 40.0% | |
| TTTGATATCTGAGCATGGCA+AGG | + | chr1.1:129184-129203 | MS.gene27111:intron | 40.0% | |
| ! | AAGCTTTTGAACCACGTGAA+AGG | - | chr1.1:126824-126843 | None:intergenic | 40.0% |
| ! | AGCCTATGACAGAATGGATT+GGG | + | chr1.1:128029-128048 | MS.gene27111:intron | 40.0% |
| ! | AGCTTTTGAACCACGTGAAA+GGG | - | chr1.1:126823-126842 | None:intergenic | 40.0% |
| ! | CAGAACTGTTGGTAAAATCC+GGG | - | chr1.1:127652-127671 | None:intergenic | 40.0% |
| ! | CCAGAACTGTTGGTAAAATC+CGG | - | chr1.1:127653-127672 | None:intergenic | 40.0% |
| ! | CCTGATAAGTTGGAATTGCA+GGG | + | chr1.1:126292-126311 | MS.gene27111:intron | 40.0% |
| ! | CTGATAAGTTGGAATTGCAG+GGG | + | chr1.1:126293-126312 | MS.gene27111:intron | 40.0% |
| ! | CTTTTCTTAATGCCACCATC+GGG | + | chr1.1:128976-128995 | MS.gene27111:intron | 40.0% |
| ! | GGCTTGTTTGTGCATGATAT+TGG | - | chr1.1:130812-130831 | None:intergenic | 40.0% |
| ! | TAGTGCACACGTAGTTGATA+GGG | + | chr1.1:129784-129803 | MS.gene27111:intron | 40.0% |
| ! | TCAAAAGTGGATTCAGTGGA+TGG | + | chr1.1:128089-128108 | MS.gene27111:intron | 40.0% |
| ! | TCACATCCTCCCATATTTTG+AGG | - | chr1.1:129757-129776 | None:intergenic | 40.0% |
| ! | TCAGTCAAAAGTGGATTCAG+TGG | + | chr1.1:128085-128104 | MS.gene27111:intron | 40.0% |
| !! | AATTCTTTTTGGTGGGGTCA+CGG | + | chr1.1:128759-128778 | MS.gene27111:intron | 40.0% |
| !! | CATAAAAATCATGGTGGGCT+AGG | + | chr1.1:128834-128853 | MS.gene27111:intron | 40.0% |
| !! | CCTATTAGGAAGGTGTTCAA+AGG | + | chr1.1:131310-131329 | MS.gene27111:CDS | 40.0% |
| !! | GCCCTTTTTCCATTCAAGTT+TGG | + | chr1.1:129582-129601 | MS.gene27111:intron | 40.0% |
| !! | TGGCTCCTTTTTCATGAACT+TGG | - | chr1.1:130606-130625 | None:intergenic | 40.0% |
| !! | TTAGCTAAAGTGCTGCAGTT+TGG | + | chr1.1:130112-130131 | MS.gene27111:intron | 40.0% |
| !!! | GAGGTGGTCTTGCTTTATTT+TGG | + | chr1.1:126480-126499 | MS.gene27111:intron | 40.0% |
| AAAAGGTAGTTGGATCAGGG+TGG | - | chr1.1:131483-131502 | None:intergenic | 45.0% | |
| AAAGCTTCGCCAATAGCAAC+CGG | - | chr1.1:130148-130167 | None:intergenic | 45.0% | |
| AACAAAAGGTGGGAGATTGG+TGG | - | chr1.1:128315-128334 | None:intergenic | 45.0% | |
| AACAAGCTCTCACAATTGGG+TGG | - | chr1.1:125938-125957 | None:intergenic | 45.0% | |
| AACATTGTCGTCAGCAGAGA+CGG | - | chr1.1:127539-127558 | None:intergenic | 45.0% | |
| AACGACAGAGATGACGAGTA+TGG | + | chr1.1:131031-131050 | MS.gene27111:CDS | 45.0% | |
| AAGGCAGTAGCTGATGAGAT+CGG | + | chr1.1:131097-131116 | MS.gene27111:CDS | 45.0% | |
| AAGTTGGAATTGCAGGGGTT+TGG | + | chr1.1:126298-126317 | MS.gene27111:intron | 45.0% | |
| AATCCGGGACTATAACCATC+CGG | - | chr1.1:127637-127656 | None:intergenic | 45.0% | |
| AATTCCCGGAACTGTTAAGC+CGG | - | chr1.1:127213-127232 | None:intergenic | 45.0% | |
| ACAAGTGTGACACCACCAAA+TGG | + | chr1.1:131278-131297 | MS.gene27111:CDS | 45.0% | |
| ACGGTGGATGTCACAGAATT+TGG | + | chr1.1:130268-130287 | MS.gene27111:intron | 45.0% | |
| ACTAAGGGTGGCTTCTTGAT+TGG | + | chr1.1:125519-125538 | MS.gene27111:CDS | 45.0% | |
| ACTCAAGGGTCGAGTTTATC+CGG | + | chr1.1:130338-130357 | MS.gene27111:intron | 45.0% | |
| ACTTACAGCCCCTTTCACTA+AGG | + | chr1.1:127561-127580 | MS.gene27111:intron | 45.0% | |
| ACTTTCGCTACGAAAATGCG+TGG | + | chr1.1:127014-127033 | MS.gene27111:intron | 45.0% | |
| AGAAGTGGCTTCTCTTGCTA+AGG | - | chr1.1:130389-130408 | None:intergenic | 45.0% | |
| AGCACGTTGCACAAAGCTAT+TGG | - | chr1.1:127811-127830 | None:intergenic | 45.0% | |
| AGCTGACTGCCAAACTTGAA+TGG | - | chr1.1:129594-129613 | None:intergenic | 45.0% | |
| AGGATAATGATCGGATGACG+GGG | - | chr1.1:126945-126964 | None:intergenic | 45.0% | |
| AGTTGGAATTGCAGGGGTTT+GGG | + | chr1.1:126299-126318 | MS.gene27111:intron | 45.0% | |
| ATAACTCGGATTATGCCCGA+TGG | - | chr1.1:128994-129013 | None:intergenic | 45.0% | |
| ATACTCCGCCACACATAACT+CGG | - | chr1.1:129008-129027 | None:intergenic | 45.0% | |
| ATATCCGGCTTAACAGTTCC+GGG | + | chr1.1:127206-127225 | MS.gene27111:intron | 45.0% | |
| ATCTGCTACAGCGAGAAAGA+AGG | + | chr1.1:127363-127382 | MS.gene27111:intron | 45.0% | |
| ATGCAAGCGAGAAAAGAGGT+AGG | + | chr1.1:126714-126733 | MS.gene27111:intron | 45.0% | |
| ATGCACCCGGATAAATGTTC+TGG | + | chr1.1:127610-127629 | MS.gene27111:intron | 45.0% | |
| ATGGATGCAAGCGAGAAAAG+AGG | + | chr1.1:126710-126729 | MS.gene27111:intron | 45.0% | |
| ATTAGCTGCAGCAGGATCAT+TGG | - | chr1.1:130852-130871 | None:intergenic | 45.0% | |
| ATTAGGAATGCTGAGGAGAG+TGG | + | chr1.1:128255-128274 | MS.gene27111:intron | 45.0% | |
| CACCTTCCTAATAGGCATCA+AGG | - | chr1.1:131305-131324 | None:intergenic | 45.0% | |
| CACTAAGGAAGAATTTCGCG+AGG | + | chr1.1:127576-127595 | MS.gene27111:intron | 45.0% | |
| CATATTCAAGTCTGGCGGAA+AGG | - | chr1.1:127731-127750 | None:intergenic | 45.0% | |
| CCCTGCAATTCCAACTTATC+AGG | - | chr1.1:126295-126314 | None:intergenic | 45.0% | |
| CCGGATATTCAGCAAAGGTT+TGG | + | chr1.1:129698-129717 | MS.gene27111:intron | 45.0% | |
| CCTAGTTCGACACTTCAATC+CGG | + | chr1.1:126352-126371 | MS.gene27111:intron | 45.0% | |
| CGTAGCGAAAGTTGCGTTTA+TGG | - | chr1.1:127006-127025 | None:intergenic | 45.0% | |
| CTAAGGGTGGCTTCTTGATT+GGG | + | chr1.1:125520-125539 | MS.gene27111:CDS | 45.0% | |
| CTCCTCAGCATTCCTAATCA+AGG | - | chr1.1:128253-128272 | None:intergenic | 45.0% | |
| CTGTATGAATGGCAGCATTC+TGG | - | chr1.1:129634-129653 | None:intergenic | 45.0% | |
| CTTCAAAGCAGATGAGAGTC+AGG | + | chr1.1:128356-128375 | MS.gene27111:intron | 45.0% | |
| GAATGAGCCACTTATTCGAC+AGG | + | chr1.1:129211-129230 | MS.gene27111:intron | 45.0% | |
| GACGGCAGAATCTGTATGAA+TGG | - | chr1.1:129645-129664 | None:intergenic | 45.0% | |
| GAGTAGTAAGTGGCTATCGA+AGG | + | chr1.1:128629-128648 | MS.gene27111:intron | 45.0% | |
| GATGTAGTATACCAGCCTGA+AGG | + | chr1.1:130779-130798 | MS.gene27111:intron | 45.0% | |
| GCAAACAAAAGGTGGGAGAT+TGG | - | chr1.1:128318-128337 | None:intergenic | 45.0% | |
| GCACGTTGCACAAAGCTATT+GGG | - | chr1.1:127810-127829 | None:intergenic | 45.0% | |
| GCAGGTACACAATGCAAGTT+CGG | + | chr1.1:127078-127097 | MS.gene27111:intron | 45.0% | |
| GGAGGTTATGATAGGAGTGA+AGG | + | chr1.1:131349-131368 | MS.gene27111:CDS | 45.0% | |
| GGATGCCTTCAATGATTGGT+CGG | + | chr1.1:128547-128566 | MS.gene27111:intron | 45.0% | |
| GGCATAATCCGAGTTATGTG+TGG | + | chr1.1:128997-129016 | MS.gene27111:intron | 45.0% | |
| GGGACATTTATTGTTGCTGG+AGG | + | chr1.1:131331-131350 | MS.gene27111:CDS | 45.0% | |
| GTCACGAAATCCTTGAAACC+AGG | - | chr1.1:127049-127068 | None:intergenic | 45.0% | |
| GTCCTTGATGCCTATTAGGA+AGG | + | chr1.1:131300-131319 | MS.gene27111:CDS | 45.0% | |
| GTGCATCTCAGACAATCAGT+CGG | + | chr1.1:127885-127904 | MS.gene27111:intron | 45.0% | |
| GTGCGCCAAGTTCATGAAAA+AGG | + | chr1.1:130598-130617 | MS.gene27111:CDS | 45.0% | |
| GTGTGTCTAACACAGCACAA+GGG | + | chr1.1:125553-125572 | MS.gene27111:CDS | 45.0% | |
| TAAGGGTGGCTTCTTGATTG+GGG | + | chr1.1:125521-125540 | MS.gene27111:CDS | 45.0% | |
| TAGTGCTTACAGGCTATGTG+TGG | + | chr1.1:129343-129362 | MS.gene27111:intron | 45.0% | |
| TATACGCATGATCCTGTCCT+TGG | + | chr1.1:131502-131521 | MS.gene27111:CDS | 45.0% | |
| TCATGAACTTGGCGCACAAT+TGG | - | chr1.1:130595-130614 | None:intergenic | 45.0% | |
| TCATTTGTGCTTAATCGGCG+AGG | - | chr1.1:130887-130906 | None:intergenic | 45.0% | |
| TCCAAATGCCAGGCGTATTT+GGG | - | chr1.1:130546-130565 | None:intergenic | 45.0% | |
| TCCATCAAAACCTGCTTCCA+TGG | - | chr1.1:130954-130973 | None:intergenic | 45.0% | |
| TCCCTATTCTTGATGCTCCT+TGG | + | chr1.1:129090-129109 | MS.gene27111:intron | 45.0% | |
| TCCGGTCCAGAACATTTATC+CGG | - | chr1.1:127619-127638 | None:intergenic | 45.0% | |
| TCTGGTACTAGTATTTGCCG+CGG | + | chr1.1:128285-128304 | MS.gene27111:intron | 45.0% | |
| TCTGTTGATCGTAGTGGTAG+AGG | + | chr1.1:126458-126477 | MS.gene27111:intron | 45.0% | |
| TCTTGCAAGCGAACTCTAGT+CGG | - | chr1.1:129485-129504 | None:intergenic | 45.0% | |
| TGACTCCGGATATTCAGCAA+AGG | + | chr1.1:129693-129712 | MS.gene27111:intron | 45.0% | |
| TTCATGTGCGGCTGATATGA+TGG | + | chr1.1:127117-127136 | MS.gene27111:intron | 45.0% | |
| TTGTCCCTCGAAGATAACTC+AGG | + | chr1.1:127397-127416 | MS.gene27111:intron | 45.0% | |
| TTTCGTGACTGATGTTTGGC+AGG | + | chr1.1:127060-127079 | MS.gene27111:intron | 45.0% | |
| ! | AAGTTCGGTGATGCCAAAAC+TGG | + | chr1.1:127093-127112 | MS.gene27111:intron | 45.0% |
| ! | AGATGGGCTTCAGTCAAAAG+TGG | + | chr1.1:128076-128095 | MS.gene27111:intron | 45.0% |
| ! | AGATTTCAGCGTACCGGTAT+TGG | + | chr1.1:130055-130074 | MS.gene27111:intron | 45.0% |
| ! | ATAAAGAGGTACGGAGAGAG+AGG | - | chr1.1:128207-128226 | None:intergenic | 45.0% |
| ! | ATTCAAGTTTGGCAGTCAGC+TGG | + | chr1.1:129593-129612 | MS.gene27111:intron | 45.0% |
| ! | CAGGTTTGGTTAGTGCACAA+TGG | + | chr1.1:129978-129997 | MS.gene27111:intron | 45.0% |
| ! | CCGGATTTTACCAACAGTTC+TGG | + | chr1.1:127650-127669 | MS.gene27111:intron | 45.0% |
| ! | GATAAATGTTCTGGACCGGA+TGG | + | chr1.1:127619-127638 | MS.gene27111:intron | 45.0% |
| ! | GATGCCTTCAATGATTGGTC+GGG | + | chr1.1:128548-128567 | MS.gene27111:intron | 45.0% |
| ! | GCCTGATAAGTTGGAATTGC+AGG | + | chr1.1:126291-126310 | MS.gene27111:intron | 45.0% |
| ! | GGATATTGATTAGCTGCAGC+AGG | - | chr1.1:130860-130879 | None:intergenic | 45.0% |
| ! | GGCAATGTTTTCTATGCACC+CGG | + | chr1.1:127597-127616 | MS.gene27111:intron | 45.0% |
| ! | GGCTTATGGACGTCTCTTTT+TGG | + | chr1.1:131408-131427 | MS.gene27111:CDS | 45.0% |
| ! | GTTGCTATTGGCGAAGCTTT+AGG | + | chr1.1:130148-130167 | MS.gene27111:intron | 45.0% |
| !! | AAAAGGTACCCAAATACGCC+TGG | + | chr1.1:130535-130554 | MS.gene27111:intron | 45.0% |
| !! | AAGGGCATTCGAATAACAGG+TGG | - | chr1.1:129568-129587 | None:intergenic | 45.0% |
| !! | AGCCAAGGAGCATCAAGAAT+AGG | - | chr1.1:129095-129114 | None:intergenic | 45.0% |
| !! | AGTGGGACTAGCTAAAGAAG+TGG | - | chr1.1:130404-130423 | None:intergenic | 45.0% |
| !! | GCCAAGGAGCATCAAGAATA+GGG | - | chr1.1:129094-129113 | None:intergenic | 45.0% |
| !! | GCCGGAAGAGTATCCAAATA+TGG | + | chr1.1:130649-130668 | MS.gene27111:CDS | 45.0% |
| !! | GGAAATGGTGCTATAGCATG+TGG | + | chr1.1:131370-131389 | MS.gene27111:CDS | 45.0% |
| !! | TTCTTGATTGGGGAAGCATC+TGG | + | chr1.1:125531-125550 | MS.gene27111:CDS | 45.0% |
| !! | TTGCAAGTCCGAGCTGTTTT+GGG | + | chr1.1:128507-128526 | MS.gene27111:intron | 45.0% |
| !!! | GCTAGGTTTTAAGGACCTCT+CGG | + | chr1.1:128851-128870 | MS.gene27111:intron | 45.0% |
| !!! | TCATGGTGGGCTAGGTTTTA+AGG | + | chr1.1:128842-128861 | MS.gene27111:intron | 45.0% |
| AAGCTCTCACAATTGGGTGG+CGG | - | chr1.1:125935-125954 | None:intergenic | 50.0% | |
| AATACCTATGAGGTGGCGTC+TGG | + | chr1.1:128402-128421 | MS.gene27111:intron | 50.0% | |
| ACAGGACCATGGTGCATTCT+TGG | + | chr1.1:126671-126690 | MS.gene27111:intron | 50.0% | |
| ACCCAAATACGCCTGGCATT+TGG | + | chr1.1:130542-130561 | MS.gene27111:CDS | 50.0% | |
| ACCTCTCGGCATTCAACCTT+GGG | + | chr1.1:128865-128884 | MS.gene27111:intron | 50.0% | |
| ACTAACCGGCCAAGACACAA+GGG | - | chr1.1:126009-126028 | None:intergenic | 50.0% | |
| AGATGCTTTCCATTCCCGCA+CGG | + | chr1.1:130249-130268 | MS.gene27111:intron | 50.0% | |
| AGCAGTTCTTGAGTCCGGTT+TGG | + | chr1.1:126775-126794 | MS.gene27111:intron | 50.0% | |
| AGGCAAGCAGTTCTTGAGTC+CGG | + | chr1.1:126770-126789 | MS.gene27111:intron | 50.0% | |
| AGGCATCAAGGACCATTTGG+TGG | - | chr1.1:131293-131312 | None:intergenic | 50.0% | |
| AGTAAGTGGCTATCGAAGGC+AGG | + | chr1.1:128633-128652 | MS.gene27111:intron | 50.0% | |
| AGTCCTCGCCCTGGAATAAT+TGG | - | chr1.1:128171-128190 | None:intergenic | 50.0% | |
| ATACGCCTGGCATTTGGACA+AGG | + | chr1.1:130548-130567 | MS.gene27111:CDS | 50.0% | |
| ATACTACGGGTACCCTGAAG+GGG | + | chr1.1:126598-126617 | MS.gene27111:intron | 50.0% | |
| ATCTTGTATGGGGTGAGCAG+GGG | - | chr1.1:125277-125296 | None:intergenic | 50.0% | |
| ATTCTGTGACATCCACCGTG+CGG | - | chr1.1:130267-130286 | None:intergenic | 50.0% | |
| CACCGGAACATCAACCAAAC+CGG | - | chr1.1:126792-126811 | None:intergenic | 50.0% | |
| CATCTTGTATGGGGTGAGCA+GGG | - | chr1.1:125278-125297 | None:intergenic | 50.0% | |
| CCAGTTAATACCCCTGTGAG+TGG | - | chr1.1:128790-128809 | None:intergenic | 50.0% | |
| CCGGTCCAGAACATTTATCC+GGG | - | chr1.1:127618-127637 | None:intergenic | 50.0% | |
| CTCCAGTCACTCAAGCGATT+CGG | + | chr1.1:127509-127528 | MS.gene27111:intron | 50.0% | |
| CTGCTCACCCCATACAAGAT+GGG | + | chr1.1:125277-125296 | MS.gene27111:CDS | 50.0% | |
| CTGGTACTAGTATTTGCCGC+GGG | + | chr1.1:128286-128305 | MS.gene27111:intron | 50.0% | |
| CTGTCCCGACCAATCATTGA+AGG | - | chr1.1:128555-128574 | None:intergenic | 50.0% | |
| CTTGGGATGCTGGGTAAACA+GGG | + | chr1.1:128882-128901 | MS.gene27111:intron | 50.0% | |
| GACAGAGATGACGAGTATGG+AGG | + | chr1.1:131034-131053 | MS.gene27111:CDS | 50.0% | |
| GAGCTCTTGCAAACAGTGCT+TGG | + | chr1.1:126879-126898 | MS.gene27111:intron | 50.0% | |
| GATACTACGGGTACCCTGAA+GGG | + | chr1.1:126597-126616 | MS.gene27111:intron | 50.0% | |
| GCAAGAAATGCCATGGAAGC+AGG | + | chr1.1:130941-130960 | MS.gene27111:CDS | 50.0% | |
| GCATTCAACCTTGGGATGCT+GGG | + | chr1.1:128873-128892 | MS.gene27111:intron | 50.0% | |
| GCTGCTGATCTAGTGGCTTA+TGG | + | chr1.1:131394-131413 | MS.gene27111:CDS | 50.0% | |
| GGCAGCGAGCAAAAGTTCAT+TGG | + | chr1.1:127302-127321 | MS.gene27111:intron | 50.0% | |
| GGGTATTAACTGGCTGAGCT+GGG | + | chr1.1:128797-128816 | MS.gene27111:intron | 50.0% | |
| GGTGTGTCTAACACAGCACA+AGG | + | chr1.1:125552-125571 | MS.gene27111:CDS | 50.0% | |
| GTATACGGAGCCTGGTTTCA+AGG | + | chr1.1:127036-127055 | MS.gene27111:intron | 50.0% | |
| GTCCAAATGCCAGGCGTATT+TGG | - | chr1.1:130547-130566 | None:intergenic | 50.0% | |
| GTGCGGCTGATATGATGGTA+TGG | + | chr1.1:127122-127141 | MS.gene27111:intron | 50.0% | |
| GTTGATCGTAGTGGTAGAGG+AGG | + | chr1.1:126461-126480 | MS.gene27111:intron | 50.0% | |
| TACGCCTGGCATTTGGACAA+GGG | + | chr1.1:130549-130568 | MS.gene27111:CDS | 50.0% | |
| TATCCGGAGACAAGCGAATG+CGG | + | chr1.1:130354-130373 | MS.gene27111:intron | 50.0% | |
| TATCTGAGCATGGCAAGGTG+TGG | + | chr1.1:129189-129208 | MS.gene27111:intron | 50.0% | |
| TATTCCCCTTGTGTCTTGGC+CGG | + | chr1.1:126001-126020 | MS.gene27111:intron | 50.0% | |
| TCACGGTAGATCCACTCACA+GGG | + | chr1.1:128776-128795 | MS.gene27111:intron | 50.0% | |
| TGATGAGATCGGAGCTGACA+AGG | + | chr1.1:131108-131127 | MS.gene27111:CDS | 50.0% | |
| TGCCCTTAGCAGAACAGGTT+TGG | + | chr1.1:129964-129983 | MS.gene27111:intron | 50.0% | |
| TGCTGCTGTTCTATGACAGC+AGG | - | chr1.1:129917-129936 | None:intergenic | 50.0% | |
| TGGAGACTCACCGGATACTA+CGG | + | chr1.1:126584-126603 | MS.gene27111:intron | 50.0% | |
| TGGCATTTGGACAAGGGAAC+AGG | + | chr1.1:130555-130574 | MS.gene27111:CDS | 50.0% | |
| TGGTACTAGTATTTGCCGCG+GGG | + | chr1.1:128287-128306 | MS.gene27111:intron | 50.0% | |
| TGTTCCCTTGTCCAAATGCC+AGG | - | chr1.1:130556-130575 | None:intergenic | 50.0% | |
| TGTTTCTCACCTTCATCGCC+CGG | + | chr1.1:129379-129398 | MS.gene27111:intron | 50.0% | |
| TTCTCGCTGTAGCAGATGCA+TGG | - | chr1.1:127360-127379 | None:intergenic | 50.0% | |
| TTCTGTCAACTTTGGCACGC+CGG | + | chr1.1:130631-130650 | MS.gene27111:CDS | 50.0% | |
| TTGCATCCTGCCACTCTTGA+AGG | - | chr1.1:129820-129839 | None:intergenic | 50.0% | |
| TTGGACAAGGGAACAGGTAG+AGG | + | chr1.1:130561-130580 | MS.gene27111:CDS | 50.0% | |
| TTGGAGGTTTACCTTCAGGC+TGG | - | chr1.1:130793-130812 | None:intergenic | 50.0% | |
| TTTGGCAGTCAGCTGGTATC+TGG | + | chr1.1:129600-129619 | MS.gene27111:intron | 50.0% | |
| TTTGTGCTTAATCGGCGAGG+AGG | - | chr1.1:130884-130903 | None:intergenic | 50.0% | |
| ! | CCCGGATAAATGTTCTGGAC+CGG | + | chr1.1:127615-127634 | MS.gene27111:intron | 50.0% |
| ! | CTTCAATGATTGGTCGGGAC+AGG | + | chr1.1:128553-128572 | MS.gene27111:intron | 50.0% |
| ! | CTTGCAAGTCCGAGCTGTTT+TGG | + | chr1.1:128506-128525 | MS.gene27111:intron | 50.0% |
| ! | GAAGCACCATTAGAGAGCCA+AGG | - | chr1.1:129110-129129 | None:intergenic | 50.0% |
| ! | GATGCTCCTTGGCTCTCTAA+TGG | + | chr1.1:129101-129120 | MS.gene27111:intron | 50.0% |
| ! | GCCAAAACTGGCTTCATGTG+CGG | + | chr1.1:127105-127124 | MS.gene27111:intron | 50.0% |
| ! | TTCAGGGTACCCGTAGTATC+CGG | - | chr1.1:126597-126616 | None:intergenic | 50.0% |
| ! | TTGGTTGATGTTCCGGTGGA+GGG | + | chr1.1:126794-126813 | MS.gene27111:intron | 50.0% |
| ! | TTTGGTTGATGTTCCGGTGG+AGG | + | chr1.1:126793-126812 | MS.gene27111:intron | 50.0% |
| !! | ATGTGGTGCTGCTGATCTAG+TGG | + | chr1.1:131387-131406 | MS.gene27111:CDS | 50.0% |
| !! | CCACTCACAGGGGTATTAAC+TGG | + | chr1.1:128787-128806 | MS.gene27111:intron | 50.0% |
| !! | CCGGATTGAAGTGTCGAACT+AGG | - | chr1.1:126355-126374 | None:intergenic | 50.0% |
| !! | GCCATGGAAGCAGGTTTTGA+TGG | + | chr1.1:130950-130969 | MS.gene27111:CDS | 50.0% |
| !! | GGAAGGTGGAGTATTGGTTC+TGG | + | chr1.1:129059-129078 | MS.gene27111:intron | 50.0% |
| !! | GTCCGGTTTGGTTGATGTTC+CGG | + | chr1.1:126787-126806 | MS.gene27111:intron | 50.0% |
| AATGCGTGGTATACGGAGCC+TGG | + | chr1.1:127028-127047 | MS.gene27111:intron | 55.0% | |
| ACAGCTCCTTCAAGAGTGGC+AGG | + | chr1.1:129811-129830 | MS.gene27111:intron | 55.0% | |
| ACCTTCATCGCCCGGGTAAT+TGG | + | chr1.1:129387-129406 | MS.gene27111:intron | 55.0% | |
| ACGCTCTTCAACTGCACGAG+GGG | - | chr1.1:126852-126871 | None:intergenic | 55.0% | |
| ACTCGGATTATGCCCGATGG+TGG | - | chr1.1:128991-129010 | None:intergenic | 55.0% | |
| ACTGCCTTCACCACTCGAAG+TGG | - | chr1.1:131085-131104 | None:intergenic | 55.0% | |
| AGACGCTCTTCAACTGCACG+AGG | - | chr1.1:126854-126873 | None:intergenic | 55.0% | |
| AGGGCGAGGACTTAGACAAG+GGG | + | chr1.1:128179-128198 | MS.gene27111:intron | 55.0% | |
| CAAGGGAACAGGTAGAGGCA+TGG | + | chr1.1:130566-130585 | MS.gene27111:CDS | 55.0% | |
| CACGGTAGATCCACTCACAG+GGG | + | chr1.1:128777-128796 | MS.gene27111:intron | 55.0% | |
| CAGCATGCCCTTAGCAGAAC+AGG | + | chr1.1:129959-129978 | MS.gene27111:intron | 55.0% | |
| CAGGGCGAGGACTTAGACAA+GGG | + | chr1.1:128178-128197 | MS.gene27111:intron | 55.0% | |
| CATGGCTCATGGAGACTCAC+CGG | + | chr1.1:126575-126594 | MS.gene27111:intron | 55.0% | |
| CCATCTTGTATGGGGTGAGC+AGG | - | chr1.1:125279-125298 | None:intergenic | 55.0% | |
| CCTGCTCACCCCATACAAGA+TGG | + | chr1.1:125276-125295 | MS.gene27111:CDS | 55.0% | |
| CCTGTTTACCCAGCATCCCA+AGG | - | chr1.1:128884-128903 | None:intergenic | 55.0% | |
| CCTTGGGATGCTGGGTAAAC+AGG | + | chr1.1:128881-128900 | MS.gene27111:intron | 55.0% | |
| CGTGCTCGCTTCATTGTTCG+CGG | + | chr1.1:129032-129051 | MS.gene27111:intron | 55.0% | |
| CTAACCGGCCAAGACACAAG+GGG | - | chr1.1:126008-126027 | None:intergenic | 55.0% | |
| CTCGACAGCTCCTTCAAGAG+TGG | + | chr1.1:129807-129826 | MS.gene27111:intron | 55.0% | |
| CTCGCTTCATTGTTCGCGGT+GGG | + | chr1.1:129036-129055 | MS.gene27111:intron | 55.0% | |
| CTGCCTTCACCACTCGAAGT+GGG | - | chr1.1:131084-131103 | None:intergenic | 55.0% | |
| CTTCCCACTTCGAGTGGTGA+AGG | + | chr1.1:131078-131097 | MS.gene27111:CDS | 55.0% | |
| GACCTCTCGGCATTCAACCT+TGG | + | chr1.1:128864-128883 | MS.gene27111:intron | 55.0% | |
| GACGCTCTTCAACTGCACGA+GGG | - | chr1.1:126853-126872 | None:intergenic | 55.0% | |
| GACTAACCGGCCAAGACACA+AGG | - | chr1.1:126010-126029 | None:intergenic | 55.0% | |
| GAGATCGGAGCTGACAAGGT+TGG | + | chr1.1:131112-131131 | MS.gene27111:CDS | 55.0% | |
| GAGGAGAGTGGAGTCATCTC+TGG | + | chr1.1:128267-128286 | MS.gene27111:intron | 55.0% | |
| GATCGTAGTGGTAGAGGAGG+TGG | + | chr1.1:126464-126483 | MS.gene27111:intron | 55.0% | |
| GGACCAATTATTCCAGGGCG+AGG | + | chr1.1:128165-128184 | MS.gene27111:intron | 55.0% | |
| GGACCGGATGGTTATAGTCC+CGG | + | chr1.1:127631-127650 | MS.gene27111:intron | 55.0% | |
| GGAGACTCACCGGATACTAC+GGG | + | chr1.1:126585-126604 | MS.gene27111:intron | 55.0% | |
| GGATACTACGGGTACCCTGA+AGG | + | chr1.1:126596-126615 | MS.gene27111:intron | 55.0% | |
| GGATGCTGGGTAAACAGGGA+TGG | + | chr1.1:128886-128905 | MS.gene27111:intron | 55.0% | |
| GGCATTCAACCTTGGGATGC+TGG | + | chr1.1:128872-128891 | MS.gene27111:intron | 55.0% | |
| GTCACGGTAGATCCACTCAC+AGG | + | chr1.1:128775-128794 | MS.gene27111:intron | 55.0% | |
| GTCATAGAACAGCAGCAGCG+CGG | + | chr1.1:129920-129939 | MS.gene27111:intron | 55.0% | |
| GTTTCTCACCTTCATCGCCC+GGG | + | chr1.1:129380-129399 | MS.gene27111:intron | 55.0% | |
| TACTACGGGTACCCTGAAGG+GGG | + | chr1.1:126599-126618 | MS.gene27111:intron | 55.0% | |
| TCCAATTACCCGGGCGATGA+AGG | - | chr1.1:129391-129410 | None:intergenic | 55.0% | |
| TCCCAAGGTTGAATGCCGAG+AGG | - | chr1.1:128869-128888 | None:intergenic | 55.0% | |
| TCGCTTCATTGTTCGCGGTG+GGG | + | chr1.1:129037-129056 | MS.gene27111:intron | 55.0% | |
| TGCCGAATCGCTTGAGTGAC+TGG | - | chr1.1:127514-127533 | None:intergenic | 55.0% | |
| TGGAGGGATACCCTTTCACG+TGG | + | chr1.1:126810-126829 | MS.gene27111:intron | 55.0% | |
| TTCTGTGACATCCACCGTGC+GGG | - | chr1.1:130266-130285 | None:intergenic | 55.0% | |
| ! | GCCGCACATGAAGCCAGTTT+TGG | - | chr1.1:127109-127128 | None:intergenic | 55.0% |
| ! | GGGGTATTAACTGGCTGAGC+TGG | + | chr1.1:128796-128815 | MS.gene27111:intron | 55.0% |
| ! | TTGTCGCTTCCCACTTCGAG+TGG | + | chr1.1:131072-131091 | MS.gene27111:CDS | 55.0% |
| !! | ACTCGGTGCGTAGTGCTTAC+AGG | + | chr1.1:129333-129352 | MS.gene27111:intron | 55.0% |
| !! | CGGTTTGGTTGATGTTCCGG+TGG | + | chr1.1:126790-126809 | MS.gene27111:intron | 55.0% |
| !! | GAGCTGACAAGGTTGGTGTG+AGG | + | chr1.1:131119-131138 | MS.gene27111:CDS | 55.0% |
| !! | GTGAAAGGGTATCCCTCCAC+CGG | - | chr1.1:126809-126828 | None:intergenic | 55.0% |
| AATCTGCCACGCGCTACAGC+AGG | + | chr1.1:129839-129858 | MS.gene27111:intron | 60.0% | |
| ACAGCAGGCTGCTGCTGCAA+GGG | - | chr1.1:129902-129921 | None:intergenic | 60.0% | |
| ACTACGGGTACCCTGAAGGG+GGG | + | chr1.1:126600-126619 | MS.gene27111:intron | 60.0% | |
| CAATGGTCGCCGCCTAGTAG+TGG | + | chr1.1:129995-130014 | MS.gene27111:intron | 60.0% | |
| CCAGGGCGAGGACTTAGACA+AGG | + | chr1.1:128177-128196 | MS.gene27111:intron | 60.0% | |
| CCTTGTCTAAGTCCTCGCCC+TGG | - | chr1.1:128180-128199 | None:intergenic | 60.0% | |
| CGCTTCATTGTTCGCGGTGG+GGG | + | chr1.1:129038-129057 | MS.gene27111:intron | 60.0% | |
| CTATGAGGTGGCGTCTGGTC+AGG | + | chr1.1:128407-128426 | MS.gene27111:intron | 60.0% | |
| CTGACCAGACGCCACCTCAT+AGG | - | chr1.1:128409-128428 | None:intergenic | 60.0% | |
| GACAAACCTGCTGTAGCGCG+TGG | - | chr1.1:129848-129867 | None:intergenic | 60.0% | |
| GCTATCGAAGGCAGGACGTG+AGG | + | chr1.1:128641-128660 | MS.gene27111:intron | 60.0% | |
| GCTCGCTTCATTGTTCGCGG+TGG | + | chr1.1:129035-129054 | MS.gene27111:intron | 60.0% | |
| GGTGGGGGAAGGTGGAGTAT+TGG | + | chr1.1:129053-129072 | MS.gene27111:intron | 60.0% | |
| GTGCTTAATCGGCGAGGAGG+TGG | - | chr1.1:130881-130900 | None:intergenic | 60.0% | |
| TCATTGTTCGCGGTGGGGGA+AGG | + | chr1.1:129042-129061 | MS.gene27111:intron | 60.0% | |
| TGACATCCACCGTGCGGGAA+TGG | - | chr1.1:130261-130280 | None:intergenic | 60.0% | |
| TGCTTTCCATTCCCGCACGG+TGG | + | chr1.1:130252-130271 | MS.gene27111:intron | 60.0% | |
| TGGCGCCGTTAACGCGATCA+AGG | + | chr1.1:125442-125461 | MS.gene27111:CDS | 60.0% | |
| CCGCCGCATTCGCTTGTCTC+CGG | - | chr1.1:130360-130379 | None:intergenic | 65.0% | |
| CCGGAGACAAGCGAATGCGG+CGG | + | chr1.1:130357-130376 | MS.gene27111:intron | 65.0% | |
| GACAGCAGGCTGCTGCTGCA+AGG | - | chr1.1:129903-129922 | None:intergenic | 65.0% | |
| GGGGCGTAGGCGTCTTGCAT+GGG | + | chr1.1:126619-126638 | MS.gene27111:intron | 65.0% | |
| TTGTTCGCGGTGGGGGAAGG+TGG | + | chr1.1:129045-129064 | MS.gene27111:intron | 65.0% | |
| ! | GGTGGCGGCATCGAAACCCT+AGG | - | chr1.1:125920-125939 | None:intergenic | 65.0% |
| AGACGCCTACGCCCCCCTTC+AGG | - | chr1.1:126614-126633 | None:intergenic | 70.0% | |
| GACGCCTACGCCCCCCTTCA+GGG | - | chr1.1:126613-126632 | None:intergenic | 70.0% | |
| ! | GGGGGCGTAGGCGTCTTGCA+TGG | + | chr1.1:126618-126637 | MS.gene27111:intron | 70.0% |
| ! | GGTACCCTGAAGGGGGGCGT+AGG | + | chr1.1:126606-126625 | MS.gene27111:intron | 70.0% |
| !! | GGGAGATTGGTGGTGCCCCG+CGG | - | chr1.1:128305-128324 | None:intergenic | 70.0% |
| CAGCGCGGACAGCAGCAGCG+CGG | + | chr1.1:129935-129954 | MS.gene27111:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 125232 | 131558 | 125232 | ID=MS.gene27111 |
| chr1.1 | mRNA | 125232 | 131558 | 125232 | ID=MS.gene27111.t1;Parent=MS.gene27111 |
| chr1.1 | exon | 125232 | 125320 | 125232 | ID=MS.gene27111.t1.exon1;Parent=MS.gene27111.t1 |
| chr1.1 | CDS | 125232 | 125320 | 125232 | ID=cds.MS.gene27111.t1;Parent=MS.gene27111.t1 |
| chr1.1 | exon | 125434 | 125574 | 125434 | ID=MS.gene27111.t1.exon2;Parent=MS.gene27111.t1 |
| chr1.1 | CDS | 125434 | 125574 | 125434 | ID=cds.MS.gene27111.t1;Parent=MS.gene27111.t1 |
| chr1.1 | exon | 130540 | 130670 | 130540 | ID=MS.gene27111.t1.exon3;Parent=MS.gene27111.t1 |
| chr1.1 | CDS | 130540 | 130670 | 130540 | ID=cds.MS.gene27111.t1;Parent=MS.gene27111.t1 |
| chr1.1 | exon | 130786 | 131558 | 130786 | ID=MS.gene27111.t1.exon4;Parent=MS.gene27111.t1 |
| chr1.1 | CDS | 130786 | 131558 | 130786 | ID=cds.MS.gene27111.t1;Parent=MS.gene27111.t1 |
| Gene Sequence |
| Protein sequence |
