Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27545.t1 | XP_003623695.2 | 89.4 | 207 | 3 | 1 | 1 | 207 | 1 | 188 | 2.90E-99 | 371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27545.t1 | Q9ZVI9 | 79.1 | 158 | 14 | 1 | 50 | 207 | 50 | 188 | 5.0e-68 | 258.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27545.t1 | G7KZ98 | 89.4 | 207 | 3 | 1 | 1 | 207 | 1 | 188 | 2.1e-99 | 371.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene27545 | 0.800859 | 1.18E-48 | -1.69E-46 |
| MS.gene050361 | MS.gene27545 | 0.821142 | 4.72E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene27545 | 0.808166 | 3.54E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene27545 | 0.804655 | 1.95E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene27545 | 0.809792 | 1.59E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene27545 | 0.816489 | 5.39E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene27545 | 0.802139 | 6.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27545.t1 | MTR_7g074620 | 89.372 | 207 | 3 | 1 | 1 | 207 | 1 | 188 | 6.55e-132 | 375 |
| MS.gene27545.t1 | MTR_7g074620 | 34.058 | 138 | 69 | 4 | 22 | 157 | 224 | 341 | 1.15e-12 | 66.2 |
| MS.gene27545.t1 | MTR_7g074620 | 89.372 | 207 | 3 | 1 | 1 | 207 | 1 | 188 | 8.55e-132 | 377 |
| MS.gene27545.t1 | MTR_7g074620 | 34.228 | 149 | 72 | 5 | 22 | 168 | 224 | 348 | 4.53e-14 | 70.5 |
| MS.gene27545.t1 | MTR_8g101470 | 68.627 | 153 | 29 | 1 | 55 | 207 | 65 | 198 | 6.27e-72 | 223 |
| MS.gene27545.t1 | MTR_8g101470 | 37.391 | 115 | 51 | 3 | 45 | 157 | 244 | 339 | 1.02e-12 | 66.2 |
| MS.gene27545.t1 | MTR_8g101470 | 68.627 | 153 | 29 | 1 | 55 | 207 | 65 | 198 | 8.47e-72 | 224 |
| MS.gene27545.t1 | MTR_8g101470 | 33.333 | 162 | 82 | 5 | 46 | 204 | 245 | 383 | 8.52e-17 | 78.2 |
| MS.gene27545.t1 | MTR_7g074620 | 98.718 | 78 | 1 | 0 | 130 | 207 | 1 | 78 | 1.25e-50 | 166 |
| MS.gene27545.t1 | MTR_7g074620 | 34.228 | 149 | 72 | 5 | 22 | 168 | 114 | 238 | 2.30e-14 | 70.5 |
| MS.gene27545.t1 | MTR_2g035810 | 36.250 | 160 | 75 | 4 | 50 | 205 | 11 | 147 | 1.90e-25 | 100 |
| MS.gene27545.t1 | MTR_3g081530 | 35.669 | 157 | 74 | 4 | 53 | 205 | 16 | 149 | 2.73e-23 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27545.t1 | AT2G38670 | 79.114 | 158 | 14 | 1 | 50 | 207 | 50 | 188 | 3.11e-86 | 261 |
| MS.gene27545.t1 | AT2G38670 | 35.088 | 114 | 49 | 4 | 57 | 168 | 257 | 347 | 9.39e-13 | 66.6 |
| MS.gene27545.t1 | AT2G32260 | 35.443 | 158 | 74 | 4 | 53 | 205 | 33 | 167 | 3.37e-25 | 100 |
| MS.gene27545.t1 | AT2G32260 | 34.677 | 124 | 56 | 3 | 84 | 205 | 18 | 118 | 1.99e-15 | 73.2 |
Find 52 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACCGATTCGTGTTTATA+TGG | 0.236649 | 7.2:+30776056 | MS.gene27545:CDS |
| TGATGAAATTATTGCTAATA+AGG | 0.259012 | 7.2:+30776173 | MS.gene27545:CDS |
| TATTCATCTTCTGGGCCATT+TGG | 0.267914 | 7.2:+30776000 | MS.gene27545:CDS |
| ACTTCGATACACTCACTATC+AGG | 0.269451 | 7.2:-30776997 | None:intergenic |
| AGTTGAACTCATTTCTGATT+TGG | 0.276236 | 7.2:+30777017 | MS.gene27545:CDS |
| AATTGAACCTTTCATGTAAA+GGG | 0.279295 | 7.2:-30776209 | None:intergenic |
| TCATCGGTGAATGAACAAAA+TGG | 0.285598 | 7.2:+30775891 | None:intergenic |
| TGCTTATGCTCATGCCAAAA+AGG | 0.344791 | 7.2:+30777290 | MS.gene27545:CDS |
| CTTCTGGGCCATTTGGGTTG+TGG | 0.345993 | 7.2:+30776007 | MS.gene27545:CDS |
| GTAATGGCATATGGAGCTTC+AGG | 0.353572 | 7.2:-30777177 | None:intergenic |
| ATCGTTGGTGTATCAGTATT+AGG | 0.355171 | 7.2:+30775973 | MS.gene27545:CDS |
| ATTCATCTTCTGGGCCATTT+GGG | 0.367495 | 7.2:+30776001 | MS.gene27545:CDS |
| CTTTCATGTAAAGGGGTAAC+AGG | 0.373536 | 7.2:-30776201 | None:intergenic |
| AATATAGATTACATTATTCA+TGG | 0.380755 | 7.2:+30777234 | MS.gene27545:CDS |
| CTTGGTGATCAATTGATTGT+TGG | 0.388238 | 7.2:+30776138 | MS.gene27545:CDS |
| AAATTGAACCTTTCATGTAA+AGG | 0.427115 | 7.2:-30776210 | None:intergenic |
| TTGCGTCAAGCTCGTGCTCT+TGG | 0.428384 | 7.2:+30776120 | MS.gene27545:CDS |
| CATCGGTGAATGAACAAAAT+GGG | 0.428841 | 7.2:+30775892 | None:intergenic |
| CCGATTCGTGTTTATATGGA+TGG | 0.449331 | 7.2:+30776060 | MS.gene27545:CDS |
| AATTCCTCAGTAATGGCATA+TGG | 0.452121 | 7.2:-30777186 | None:intergenic |
| CTTCATGAATTCCTCAGTAA+TGG | 0.452344 | 7.2:-30777193 | None:intergenic |
| GATGAAATTATTGCTAATAA+GGG | 0.453969 | 7.2:+30776174 | MS.gene27545:CDS |
| TTATGGTGAATGCTGTGAAA+TGG | 0.466073 | 7.2:+30777139 | MS.gene27545:CDS |
| CTGTTACCCCTTTACATGAA+AGG | 0.486145 | 7.2:+30776202 | MS.gene27545:CDS |
| GTTTCCAGCACTGATATTGT+TGG | 0.491631 | 7.2:+30777348 | MS.gene27545:CDS |
| TATGGTGAATGCTGTGAAAT+GGG | 0.494368 | 7.2:+30777140 | MS.gene27545:CDS |
| TGCGCTTTATCTGTTTATAA+CGG | 0.494682 | 7.2:-30777317 | None:intergenic |
| ATATAGATTACATTATTCAT+GGG | 0.507921 | 7.2:+30777235 | MS.gene27545:CDS |
| CCATCCATATAAACACGAAT+CGG | 0.508010 | 7.2:-30776060 | None:intergenic |
| TGTGTGTGACAGGTTGATTA+TGG | 0.508667 | 7.2:+30777122 | MS.gene27545:intron |
| CTGACCAACAATATCAGTGC+TGG | 0.528820 | 7.2:-30777352 | None:intergenic |
| GCATAAGCATCAGTTCCATC+AGG | 0.530923 | 7.2:-30777276 | None:intergenic |
| AATCTAATGCGGCGGTGAAG+TGG | 0.557630 | 7.2:+30775935 | MS.gene27545:CDS |
| GTGGTCGGAGTTATCATCGT+TGG | 0.560954 | 7.2:+30775958 | MS.gene27545:CDS |
| GCGGCGGTGAAGTGGGTGGT+CGG | 0.566706 | 7.2:+30775943 | MS.gene27545:CDS |
| ATCTAATGCGGCGGTGAAGT+GGG | 0.571718 | 7.2:+30775936 | MS.gene27545:CDS |
| ATCGGTGAATGAACAAAATG+GGG | 0.578092 | 7.2:+30775893 | None:intergenic |
| TGCTGTGAAATGGGTTGATG+AGG | 0.579715 | 7.2:+30777149 | MS.gene27545:CDS |
| GATCCTTGTGTTCTACCTGA+TGG | 0.587679 | 7.2:+30777261 | MS.gene27545:CDS |
| CTTCGATACACTCACTATCA+GGG | 0.588154 | 7.2:-30776996 | None:intergenic |
| ATTGAACCTTTCATGTAAAG+GGG | 0.588992 | 7.2:-30776208 | None:intergenic |
| AAACAGATAAAGCGCACGGA+AGG | 0.598970 | 7.2:+30777324 | MS.gene27545:CDS |
| TATAGATTACATTATTCATG+GGG | 0.619764 | 7.2:+30777236 | MS.gene27545:CDS |
| GTTCCATCAGGTAGAACACA+AGG | 0.643125 | 7.2:-30777264 | None:intergenic |
| CAGTGTTGAATCTAATGCGG+CGG | 0.663209 | 7.2:+30775927 | MS.gene27545:CDS |
| TAATGCGGCGGTGAAGTGGG+TGG | 0.671113 | 7.2:+30775939 | MS.gene27545:CDS |
| TTATAAACAGATAAAGCGCA+CGG | 0.674873 | 7.2:+30777320 | MS.gene27545:CDS |
| CGGTGAATGAACAAAATGGG+GGG | 0.680827 | 7.2:+30775895 | None:intergenic |
| TCATGTAAAGGGGTAACAGG+AGG | 0.682525 | 7.2:-30776198 | None:intergenic |
| TCGGTGAATGAACAAAATGG+GGG | 0.684672 | 7.2:+30775894 | None:intergenic |
| TAGCAGTGTTGAATCTAATG+CGG | 0.691391 | 7.2:+30775924 | MS.gene27545:CDS |
| AGCTCCATATGCCATTACTG+AGG | 0.698360 | 7.2:+30777182 | MS.gene27545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAGATTACATTATTCA+TGG | + | chr7.2:30777234-30777253 | MS.gene27545:CDS | 15.0% |
| !! | ATATAGATTACATTATTCAT+GGG | + | chr7.2:30777235-30777254 | MS.gene27545:CDS | 15.0% |
| !! | TTGTTTAAATGAATTTATGA+TGG | + | chr7.2:30776385-30776404 | MS.gene27545:intron | 15.0% |
| !!! | TATTTTTAATTTACCATTTC+TGG | + | chr7.2:30776260-30776279 | MS.gene27545:intron | 15.0% |
| !! | CTAGAATAAAATAAGTTTAG+CGG | + | chr7.2:30776571-30776590 | MS.gene27545:intron | 20.0% |
| !! | GATGAAATTATTGCTAATAA+GGG | + | chr7.2:30776174-30776193 | MS.gene27545:CDS | 20.0% |
| !! | TATAGATTACATTATTCATG+GGG | + | chr7.2:30777236-30777255 | MS.gene27545:CDS | 20.0% |
| !! | TGATGAAATTATTGCTAATA+AGG | + | chr7.2:30776173-30776192 | MS.gene27545:CDS | 20.0% |
| !! | TTAAATTGATTGTACTTACA+TGG | + | chr7.2:30776350-30776369 | MS.gene27545:intron | 20.0% |
| !! | TTCTTTCATAAACCATATTT+AGG | - | chr7.2:30776851-30776870 | None:intergenic | 20.0% |
| !!! | AACTTATTTTATTCTAGTGT+TGG | - | chr7.2:30776568-30776587 | None:intergenic | 20.0% |
| !!! | GTTATTTTGATTTGTTTGTT+TGG | + | chr7.2:30777071-30777090 | MS.gene27545:intron | 20.0% |
| !!! | TCTTTCTTAATAGTTTTTCT+AGG | - | chr7.2:30776807-30776826 | None:intergenic | 20.0% |
| !!! | TTTATTTTGTGATTTTGATG+TGG | + | chr7.2:30777049-30777068 | MS.gene27545:intron | 20.0% |
| !!! | TTTTTCTGAGATTTTGATTA+TGG | + | chr7.2:30777096-30777115 | MS.gene27545:intron | 20.0% |
| ! | AAATTGAACCTTTCATGTAA+AGG | - | chr7.2:30776213-30776232 | None:intergenic | 25.0% |
| ! | AACACCTATAGTAGAATATA+TGG | + | chr7.2:30776674-30776693 | MS.gene27545:intron | 25.0% |
| ! | AATTGAACCTTTCATGTAAA+GGG | - | chr7.2:30776212-30776231 | None:intergenic | 25.0% |
| !! | TAGAATATATGGTGGAAAAT+AGG | + | chr7.2:30776685-30776704 | MS.gene27545:intron | 25.0% |
| !! | TAGGTTTTTATTCATCTTCT+GGG | + | chr7.2:30775992-30776011 | MS.gene27545:CDS | 25.0% |
| !! | TTAGGTTTTTATTCATCTTC+TGG | + | chr7.2:30775991-30776010 | MS.gene27545:CDS | 25.0% |
| !!! | TGTTTTGATATGATGCATTA+TGG | + | chr7.2:30776084-30776103 | MS.gene27545:CDS | 25.0% |
| ACCTATAGTAGAATATATGG+TGG | + | chr7.2:30776677-30776696 | MS.gene27545:intron | 30.0% | |
| AGATGTGATAGGATTAGAAA+TGG | + | chr7.2:30776629-30776648 | MS.gene27545:intron | 30.0% | |
| AGTTGAACTCATTTCTGATT+TGG | + | chr7.2:30777017-30777036 | MS.gene27545:CDS | 30.0% | |
| ATAAGATTGACGATGTTGTA+TGG | + | chr7.2:30776518-30776537 | MS.gene27545:intron | 30.0% | |
| ATCGTCAATCTTATAGTTGT+AGG | - | chr7.2:30776512-30776531 | None:intergenic | 30.0% | |
| ATTGAACCTTTCATGTAAAG+GGG | - | chr7.2:30776211-30776230 | None:intergenic | 30.0% | |
| GATTTGTAGATTCTGTACTA+AGG | + | chr7.2:30776733-30776752 | MS.gene27545:intron | 30.0% | |
| TAATGAGCTGAACCTAAATA+TGG | + | chr7.2:30776836-30776855 | MS.gene27545:intron | 30.0% | |
| TCCACCATATATTCTACTAT+AGG | - | chr7.2:30776681-30776700 | None:intergenic | 30.0% | |
| TGCGCTTTATCTGTTTATAA+CGG | - | chr7.2:30777320-30777339 | None:intergenic | 30.0% | |
| TGGCTACATGAATCAAATTA+CGG | - | chr7.2:30776881-30776900 | None:intergenic | 30.0% | |
| TTATAAACAGATAAAGCGCA+CGG | + | chr7.2:30777320-30777339 | MS.gene27545:CDS | 30.0% | |
| TTGTACTTACATGGTATGTA+TGG | + | chr7.2:30776359-30776378 | MS.gene27545:intron | 30.0% | |
| ! | AACAGCTTTTTATCCAGAAA+TGG | - | chr7.2:30776276-30776295 | None:intergenic | 30.0% |
| !! | AAAACCGATTCGTGTTTATA+TGG | + | chr7.2:30776056-30776075 | MS.gene27545:CDS | 30.0% |
| AATTCCTCAGTAATGGCATA+TGG | - | chr7.2:30777189-30777208 | None:intergenic | 35.0% | |
| ATCATTGAATTCAAGCTCAG+TGG | + | chr7.2:30776432-30776451 | MS.gene27545:intron | 35.0% | |
| ATCGTTGGTGTATCAGTATT+AGG | + | chr7.2:30775973-30775992 | MS.gene27545:CDS | 35.0% | |
| CCATCCATATAAACACGAAT+CGG | - | chr7.2:30776063-30776082 | None:intergenic | 35.0% | |
| CTTCATGAATTCCTCAGTAA+TGG | - | chr7.2:30777196-30777215 | None:intergenic | 35.0% | |
| GGAAAAAGAATGGTAGAAGA+AGG | + | chr7.2:30776028-30776047 | MS.gene27545:CDS | 35.0% | |
| TATGGTGAATGCTGTGAAAT+GGG | + | chr7.2:30777140-30777159 | MS.gene27545:CDS | 35.0% | |
| TTATGGTGAATGCTGTGAAA+TGG | + | chr7.2:30777139-30777158 | MS.gene27545:CDS | 35.0% | |
| ! | CTTGGTGATCAATTGATTGT+TGG | + | chr7.2:30776138-30776157 | MS.gene27545:CDS | 35.0% |
| ! | TAGCAGTGTTGAATCTAATG+CGG | + | chr7.2:30775924-30775943 | MS.gene27545:CDS | 35.0% |
| ! | TTCTTTTTCCACAACCCAAA+TGG | - | chr7.2:30776018-30776037 | None:intergenic | 35.0% |
| ! | TTGATATAGTGTTGGATGTG+TGG | + | chr7.2:30776599-30776618 | MS.gene27545:intron | 35.0% |
| !! | ATTGATTGTGATTTGCTGAC+AGG | + | chr7.2:30776960-30776979 | MS.gene27545:intron | 35.0% |
| !! | TTTGGGTTGTGGAAAAAGAA+TGG | + | chr7.2:30776018-30776037 | MS.gene27545:CDS | 35.0% |
| AAGCTCAGTGGTTGAAACAT+AGG | + | chr7.2:30776444-30776463 | MS.gene27545:intron | 40.0% | |
| ACTAAGGAGAGTAGATCAGA+TGG | + | chr7.2:30776749-30776768 | MS.gene27545:intron | 40.0% | |
| ACTTCGATACACTCACTATC+AGG | - | chr7.2:30777000-30777019 | None:intergenic | 40.0% | |
| ATTCATCTTCTGGGCCATTT+GGG | + | chr7.2:30776001-30776020 | MS.gene27545:CDS | 40.0% | |
| CGGAGATCTTGATATAGTGT+TGG | + | chr7.2:30776591-30776610 | MS.gene27545:intron | 40.0% | |
| CTGTTACCCCTTTACATGAA+AGG | + | chr7.2:30776202-30776221 | MS.gene27545:CDS | 40.0% | |
| CTTCGATACACTCACTATCA+GGG | - | chr7.2:30776999-30777018 | None:intergenic | 40.0% | |
| CTTTCATGTAAAGGGGTAAC+AGG | - | chr7.2:30776204-30776223 | None:intergenic | 40.0% | |
| GGCAATATTAGAGAGAGTTG+AGG | + | chr7.2:30776650-30776669 | MS.gene27545:intron | 40.0% | |
| GTGGTAAGACTAGATGTGAT+AGG | + | chr7.2:30776618-30776637 | MS.gene27545:intron | 40.0% | |
| TAGATCAGATGGAGTTTAGC+CGG | + | chr7.2:30776760-30776779 | MS.gene27545:intron | 40.0% | |
| TATTCATCTTCTGGGCCATT+TGG | + | chr7.2:30776000-30776019 | MS.gene27545:CDS | 40.0% | |
| TGCTTATGCTCATGCCAAAA+AGG | + | chr7.2:30777290-30777309 | MS.gene27545:CDS | 40.0% | |
| TTCCTCTATCTCTAGTGATC+CGG | - | chr7.2:30776782-30776801 | None:intergenic | 40.0% | |
| ! | ATATGGTGGAAAATAGGCTC+AGG | + | chr7.2:30776691-30776710 | MS.gene27545:intron | 40.0% |
| ! | ATTATGGTGATGTGTGTGAC+AGG | + | chr7.2:30777112-30777131 | MS.gene27545:intron | 40.0% |
| ! | CCGATTCGTGTTTATATGGA+TGG | + | chr7.2:30776060-30776079 | MS.gene27545:CDS | 40.0% |
| ! | TTTATAACGGCCAGCCTTTT+TGG | - | chr7.2:30777307-30777326 | None:intergenic | 40.0% |
| !! | GAACAAAGTGTTGAACGATG+AGG | + | chr7.2:30776540-30776559 | MS.gene27545:intron | 40.0% |
| !! | GTTTCCAGCACTGATATTGT+TGG | + | chr7.2:30777348-30777367 | MS.gene27545:CDS | 40.0% |
| !! | TGTGTGTGACAGGTTGATTA+TGG | + | chr7.2:30777122-30777141 | MS.gene27545:intron | 40.0% |
| AAACAGATAAAGCGCACGGA+AGG | + | chr7.2:30777324-30777343 | MS.gene27545:CDS | 45.0% | |
| AGCTCCATATGCCATTACTG+AGG | + | chr7.2:30777182-30777201 | MS.gene27545:CDS | 45.0% | |
| ATGTAGCCATTCCCACTTAG+CGG | + | chr7.2:30776892-30776911 | MS.gene27545:intron | 45.0% | |
| CGTATCGCATAAAACACACG+AGG | - | chr7.2:30776474-30776493 | None:intergenic | 45.0% | |
| CTGACCAACAATATCAGTGC+TGG | - | chr7.2:30777355-30777374 | None:intergenic | 45.0% | |
| GATCCTTGTGTTCTACCTGA+TGG | + | chr7.2:30777261-30777280 | MS.gene27545:CDS | 45.0% | |
| GCATAAGCATCAGTTCCATC+AGG | - | chr7.2:30777279-30777298 | None:intergenic | 45.0% | |
| GTAATGGCATATGGAGCTTC+AGG | - | chr7.2:30777180-30777199 | None:intergenic | 45.0% | |
| GTTCCATCAGGTAGAACACA+AGG | - | chr7.2:30777267-30777286 | None:intergenic | 45.0% | |
| TATGCTCATGCCAAAAAGGC+TGG | + | chr7.2:30777294-30777313 | MS.gene27545:CDS | 45.0% | |
| TCATGTAAAGGGGTAACAGG+AGG | - | chr7.2:30776201-30776220 | None:intergenic | 45.0% | |
| ! | CAGTGTTGAATCTAATGCGG+CGG | + | chr7.2:30775927-30775946 | MS.gene27545:CDS | 45.0% |
| !! | TGCTGTGAAATGGGTTGATG+AGG | + | chr7.2:30777149-30777168 | MS.gene27545:CDS | 45.0% |
| AATCTAATGCGGCGGTGAAG+TGG | + | chr7.2:30775935-30775954 | MS.gene27545:CDS | 50.0% | |
| ACTAAGCCTTTCCCGCTAAG+TGG | - | chr7.2:30776907-30776926 | None:intergenic | 50.0% | |
| AGCCGGATCACTAGAGATAG+AGG | + | chr7.2:30776777-30776796 | MS.gene27545:intron | 50.0% | |
| ATCTAATGCGGCGGTGAAGT+GGG | + | chr7.2:30775936-30775955 | MS.gene27545:CDS | 50.0% | |
| CTAAGCCTTTCCCGCTAAGT+GGG | - | chr7.2:30776906-30776925 | None:intergenic | 50.0% | |
| GTGGTCGGAGTTATCATCGT+TGG | + | chr7.2:30775958-30775977 | MS.gene27545:CDS | 50.0% | |
| TGGTGGAAAATAGGCTCAGG+TGG | + | chr7.2:30776694-30776713 | MS.gene27545:intron | 50.0% | |
| TGTAGCCATTCCCACTTAGC+GGG | + | chr7.2:30776893-30776912 | MS.gene27545:intron | 50.0% | |
| CCATTCCCACTTAGCGGGAA+AGG | + | chr7.2:30776898-30776917 | MS.gene27545:intron | 55.0% | |
| CCTTTCCCGCTAAGTGGGAA+TGG | - | chr7.2:30776901-30776920 | None:intergenic | 55.0% | |
| TTGCGTCAAGCTCGTGCTCT+TGG | + | chr7.2:30776120-30776139 | MS.gene27545:CDS | 55.0% | |
| !! | CTTCTGGGCCATTTGGGTTG+TGG | + | chr7.2:30776007-30776026 | MS.gene27545:CDS | 55.0% |
| TAATGCGGCGGTGAAGTGGG+TGG | + | chr7.2:30775939-30775958 | MS.gene27545:CDS | 60.0% | |
| GCGGCGGTGAAGTGGGTGGT+CGG | + | chr7.2:30775943-30775962 | MS.gene27545:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 30775901 | 30777377 | 30775901 | ID=MS.gene27545 |
| chr7.2 | mRNA | 30775901 | 30777377 | 30775901 | ID=MS.gene27545.t1;Parent=MS.gene27545 |
| chr7.2 | exon | 30775901 | 30776223 | 30775901 | ID=MS.gene27545.t1.exon1;Parent=MS.gene27545.t1 |
| chr7.2 | CDS | 30775901 | 30776223 | 30775901 | ID=cds.MS.gene27545.t1;Parent=MS.gene27545.t1 |
| chr7.2 | exon | 30776982 | 30777038 | 30776982 | ID=MS.gene27545.t1.exon2;Parent=MS.gene27545.t1 |
| chr7.2 | CDS | 30776982 | 30777038 | 30776982 | ID=cds.MS.gene27545.t1;Parent=MS.gene27545.t1 |
| chr7.2 | exon | 30777134 | 30777377 | 30777134 | ID=MS.gene27545.t1.exon3;Parent=MS.gene27545.t1 |
| chr7.2 | CDS | 30777134 | 30777377 | 30777134 | ID=cds.MS.gene27545.t1;Parent=MS.gene27545.t1 |
| Gene Sequence |
| Protein sequence |
