AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27579.t1 MTR_7g075453 96.905 420 11 1 43 462 1 418 0.0 793
MS.gene27579.t1 MTR_3g460780 45.631 309 165 3 63 369 29 336 1.77e-81 258
MS.gene27579.t1 MTR_5g098420 39.623 424 232 9 48 460 11 421 3.19e-81 258
MS.gene27579.t1 MTR_1g009950 42.857 175 97 2 43 215 1 174 1.96e-40 146
MS.gene27579.t1 MTR_2g437700 32.749 342 212 11 47 373 10 348 1.11e-37 142
MS.gene27579.t1 MTR_1g009940 37.288 177 108 2 43 217 1 176 2.42e-33 127
MS.gene27579.t1 MTR_1g009910 37.288 177 108 2 43 217 1 176 1.68e-32 125
MS.gene27579.t1 MTR_1g009920 35.625 160 98 3 43 198 1 159 2.03e-24 101
MS.gene27579.t1 MTR_2g090765 31.401 207 132 3 203 399 12 218 4.92e-21 92.4
MS.gene27579.t1 MTR_3g108760 29.651 172 116 2 43 214 3 169 2.28e-20 90.9
MS.gene27579.t1 MTR_4g059840 32.222 180 117 2 219 393 66 245 3.59e-20 90.9
MS.gene27579.t1 MTR_5g098060 34.444 180 104 6 225 398 47 218 1.35e-19 88.6
MS.gene27579.t1 MTR_4g059790 31.111 180 119 2 219 393 66 245 1.62e-19 89.0
MS.gene27579.t1 MTR_7g101080 34.177 158 99 3 218 370 32 189 2.55e-19 87.8
MS.gene27579.t1 MTR_4g053380 32.022 178 106 3 219 386 70 242 1.24e-16 80.9
MS.gene27579.t1 MTR_2g017950 33.140 172 91 5 213 368 61 224 4.95e-14 72.8
MS.gene27579.t1 MTR_8g087470 32.571 175 99 5 207 368 74 242 8.48e-14 72.4
MS.gene27579.t1 MTR_4g059720 29.091 165 100 4 218 370 31 190 1.04e-13 71.2
MS.gene27579.t1 MTR_8g087460 32.571 175 99 5 207 368 74 242 1.05e-13 72.4
MS.gene27579.t1 MTR_2g093990 28.758 153 95 3 226 369 41 188 2.54e-12 67.0
MS.gene27579.t1 MTR_8g087450 31.447 159 94 3 217 365 68 221 3.67e-12 67.4
MS.gene27579.t1 MTR_4g059780 30.058 173 104 4 211 371 73 240 4.03e-12 67.4
MS.gene27579.t1 MTR_2g093980 29.825 171 103 4 213 371 54 219 6.02e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27579.t1 AT3G60900 68.159 402 123 3 52 449 14 414 1.06e-176 501
MS.gene27579.t1 AT2G45470 63.659 410 143 5 54 462 16 420 2.94e-167 478
MS.gene27579.t1 AT4G12730 43.855 358 193 6 47 398 10 365 5.02e-87 272
MS.gene27579.t1 AT5G55730 43.671 316 173 4 59 372 20 332 2.70e-81 258
MS.gene27579.t1 AT5G55730 43.671 316 173 4 59 372 20 332 2.70e-81 258
MS.gene27579.t1 AT3G12660 50.323 155 76 1 57 211 17 170 6.42e-41 147
MS.gene27579.t1 AT2G24450 44.379 169 92 2 47 215 8 174 4.26e-35 132
MS.gene27579.t1 AT3G46550 30.882 340 202 12 65 376 30 364 4.58e-31 124
MS.gene27579.t1 AT4G31370 38.462 169 100 3 61 227 22 188 1.84e-26 108
MS.gene27579.t1 AT5G03170 37.143 175 102 4 218 384 28 202 6.93e-26 106
MS.gene27579.t1 AT2G20520 35.326 184 95 7 217 385 26 200 1.21e-19 88.6
MS.gene27579.t1 AT5G60490 33.557 149 94 3 226 369 39 187 1.17e-18 85.9
MS.gene27579.t1 AT2G04780 33.117 154 94 4 224 371 44 194 1.86e-18 85.1
MS.gene27579.t1 AT2G04780 33.117 154 94 4 224 371 44 194 1.86e-18 85.1
MS.gene27579.t1 AT1G03870 32.836 201 119 8 225 416 38 231 2.97e-17 81.6
MS.gene27579.t1 AT5G44130 31.792 173 101 5 225 385 35 202 4.97e-17 80.9

Find 151 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCTCTCTCTCCAAAA+TGG 0.229565 7.2:+30277299 MS.gene27579:CDS
AGGGATTTGTTTAACGGATT+TGG 0.248067 7.2:-30277763 None:intergenic
GAGAGAGTGGTGACCCATTT+TGG 0.249463 7.2:-30277313 None:intergenic
TTTGAAAGCTTGGTTAAATC+TGG 0.258664 7.2:-30278017 None:intergenic
TGGAAGAGTGAGAGAGTTAA+AGG 0.259781 7.2:-30277250 None:intergenic
CAAGCTTTCAAATGCTGAAT+TGG 0.289600 7.2:+30278028 MS.gene27579:CDS
GTTGATTTCGTCGGCGAGTT+TGG 0.289968 7.2:-30277448 None:intergenic
GAGAATTGCTGATACGGTTT+TGG 0.305104 7.2:+30278217 MS.gene27579:CDS
GTCAACATCACCGACTTAAA+AGG 0.308435 7.2:+30277684 MS.gene27579:CDS
TTTCAATCAACCGCTGATAA+AGG 0.319783 7.2:+30277945 MS.gene27579:CDS
AGAGAGGAAGGTGTTGTATT+GGG 0.333271 7.2:-30277421 None:intergenic
GGTGTGAACGTGAAAGCTTC+TGG 0.365284 7.2:+30278494 MS.gene27579:CDS
GATGTTGTTGACGGCGTTGC+CGG 0.368716 7.2:-30277655 None:intergenic
GAGAGAGGAAGGTGTTGTAT+TGG 0.376557 7.2:-30277422 None:intergenic
GTGTTGTATTGGGAGTAGTC+GGG 0.377757 7.2:-30277411 None:intergenic
ATTGTAAGGGATTTGTTTAA+CGG 0.389662 7.2:-30277769 None:intergenic
TATTAAAGCGGTTAGGTTAA+CGG 0.391887 7.2:-30277862 None:intergenic
CGATGGAGAGGATGAGGAGG+AGG 0.398050 7.2:-30277341 None:intergenic
GCCGGAGCCGGAGGCGAAGC+TGG 0.399756 7.2:-30278392 None:intergenic
CAATTCAGCATTTGAAAGCT+TGG 0.401045 7.2:-30278027 None:intergenic
TGGTGGAGCGGTGAGGATAC+CGG 0.401642 7.2:-30277829 None:intergenic
GGTGTTGTATTGGGAGTAGT+CGG 0.404765 7.2:-30277412 None:intergenic
CGCTTTAAAAGCTTCATCGT+TGG 0.409544 7.2:-30277985 None:intergenic
GATAGGGTGGGAGGAGGTGA+TGG 0.411423 7.2:-30277520 None:intergenic
CGCATCAGCCGGAGCACCAT+CGG 0.416372 7.2:-30278432 None:intergenic
GCCAGCTTCGCCTCCGGCTC+CGG 0.418334 7.2:+30278391 MS.gene27579:CDS
TTCGCCTCCGGCTCCGGCTC+CGG 0.418334 7.2:+30278397 MS.gene27579:CDS
TCGAGGACGGAGATATTGTA+AGG 0.421192 7.2:-30277783 None:intergenic
CGTTGCCGGTGGTTTGGAAG+AGG 0.425548 7.2:-30277641 None:intergenic
GGACTAAGACGGTGATGGTT+TGG 0.426408 7.2:-30277476 None:intergenic
GGGGTTGGAGGAGAGGATTT+CGG 0.428919 7.2:-30277391 None:intergenic
TCTTTCTCTCTCTCCAAAAT+GGG 0.429653 7.2:+30277300 MS.gene27579:CDS
ACTGCGGCGGAGAAGAGTTC+TGG 0.441570 7.2:+30278461 MS.gene27579:CDS
GCTTTAAAAGCTTCATCGTT+GGG 0.444657 7.2:-30277984 None:intergenic
TGACGGCGTTGCCGGTGGTT+TGG 0.446971 7.2:-30277647 None:intergenic
GCAGTCGACGGCGCATCAGC+CGG 0.450836 7.2:-30278443 None:intergenic
GCACCAGCAGGCTCCGGTGC+CGG 0.453273 7.2:-30278314 None:intergenic
GGTGGTTTGGAAGAGGGTGG+TGG 0.455188 7.2:-30277634 None:intergenic
AAGAGAGATGGTTTGAGTGT+GGG 0.455708 7.2:-30277281 None:intergenic
GGTGGAGCGGTGAGGATACC+GGG 0.459279 7.2:-30277828 None:intergenic
TTGGGAGTAGTCGGGGTTGG+AGG 0.460136 7.2:-30277403 None:intergenic
GTTGCCGGTGGTTTGGAAGA+GGG 0.460606 7.2:-30277640 None:intergenic
GACTTAAAAGGCGGTAAAGT+CGG 0.461657 7.2:+30277696 MS.gene27579:CDS
TACTTCACCTTCTCCGGCAC+CGG 0.462547 7.2:+30278301 MS.gene27579:CDS
CCTCCGGCTCCGGCTCCGGC+TGG 0.463306 7.2:+30278401 MS.gene27579:CDS
AGAGGATTTCGGTGATGTTG+TGG 0.464601 7.2:-30277380 None:intergenic
GTTTGCTACTTCACCTTCTC+CGG 0.464608 7.2:+30278295 MS.gene27579:CDS
AGTAGTCGAGGAGGACTAAG+AGG 0.470428 7.2:-30277566 None:intergenic
TCTCCGGCACCGGAGCCTGC+TGG 0.471174 7.2:+30278311 MS.gene27579:CDS
TGGAGAGGATGAGGAGGAGG+AGG 0.474596 7.2:-30277338 None:intergenic
AGTAGTCGGGGTTGGAGGAG+AGG 0.477034 7.2:-30277398 None:intergenic
GGCGGAGATTGTGGTGGCGA+TGG 0.477900 7.2:-30277358 None:intergenic
GAGGATTTCGGTGATGTTGT+GGG 0.478105 7.2:-30277379 None:intergenic
GTATTGGGAGTAGTCGGGGT+TGG 0.479082 7.2:-30277406 None:intergenic
AGCGGTTAGGTTAACGGAGG+AGG 0.480500 7.2:-30277856 None:intergenic
TGTAGTGTGTGCGTGTCTGT+GGG 0.480573 7.2:-30277209 None:intergenic
GGTGGAGAGAGTGGTGCCAT+TGG 0.480599 7.2:-30277616 None:intergenic
GAAGAGGGTGGTGGAGAGAG+TGG 0.485135 7.2:-30277625 None:intergenic
ACCTGCTTCTGCTCCTTCAC+CGG 0.486509 7.2:+30278349 MS.gene27579:CDS
AGTTTAGCTGCAAACGGTGC+CGG 0.490029 7.2:+30278128 MS.gene27579:CDS
TTTATCAGCGGTTGATTGAA+AGG 0.490198 7.2:-30277943 None:intergenic
TGGAGAGAGAGAAAGAGAGA+TGG 0.494100 7.2:-30277293 None:intergenic
ATTTCTAGTTTAGCTGCAAA+CGG 0.494895 7.2:+30278122 MS.gene27579:CDS
TCCATTGCCAGCTTCGCCTC+CGG 0.495146 7.2:+30278385 MS.gene27579:CDS
AAAGAGAGATGGTTTGAGTG+TGG 0.496573 7.2:-30277282 None:intergenic
GGCTTCGGCTCCGCTGCTCC+CGG 0.499991 7.2:+30277717 MS.gene27579:CDS
GGACTCTCACCAGCCGGAGC+CGG 0.501636 7.2:-30278410 None:intergenic
GGAGGAGGAGGATGAGAGAG+TGG 0.502355 7.2:-30277326 None:intergenic
TCACCAGCCGGAGCCGGAGC+CGG 0.504721 7.2:-30278404 None:intergenic
TGATAGTGTGCTTCTTCCAT+CGG 0.504863 7.2:+30278268 MS.gene27579:CDS
TTCTTCGAGAATTGCTGATA+CGG 0.508193 7.2:+30278211 MS.gene27579:CDS
GCCGGTGAAGGAGCAGAAGC+AGG 0.510054 7.2:-30278350 None:intergenic
GCATCAGCCGGAGCACCATC+GGG 0.511306 7.2:-30278431 None:intergenic
GTCGGTGAAGGAGCACCAGC+AGG 0.511641 7.2:-30278326 None:intergenic
GCAGGCTCCGGTGCCGGAGA+AGG 0.514781 7.2:-30278308 None:intergenic
GAAGGAGCACCAGCAGGCTC+CGG 0.515834 7.2:-30278320 None:intergenic
ATGTAGTGTGTGCGTGTCTG+TGG 0.516359 7.2:-30277210 None:intergenic
CTCTTCTCCGCCGCAGTCGA+CGG 0.518732 7.2:-30278455 None:intergenic
AGATGAGTCGAGTTTAGAGC+CGG 0.520592 7.2:-30277736 None:intergenic
AAAGGCGGTAAAGTCGGCTT+CGG 0.521698 7.2:+30277702 MS.gene27579:CDS
TTGGCGGGAGTTGATTTCGT+CGG 0.524457 7.2:-30277457 None:intergenic
TTAACGGAGGAGGAAGGTGG+TGG 0.527264 7.2:-30277846 None:intergenic
CGAGGAGGACTAAGAGGGAG+AGG 0.527333 7.2:-30277560 None:intergenic
AAGAGTTCTGGTAAATCTGC+TGG 0.530173 7.2:+30278473 MS.gene27579:CDS
TGGTGCCATTGGTGAGTTGG+TGG 0.531046 7.2:-30277605 None:intergenic
GAGTTTGGTTTGAGAGAGGA+AGG 0.534764 7.2:-30277433 None:intergenic
GCCGGAGGCGAAGCTGGCAA+TGG 0.534845 7.2:-30278386 None:intergenic
TGGTGGCGATGGAGAGGATG+AGG 0.537361 7.2:-30277347 None:intergenic
AGGAAGGTGGTGGAGCGGTG+AGG 0.538848 7.2:-30277836 None:intergenic
GACGGAGATAGGGTGGGAGG+AGG 0.541655 7.2:-30277526 None:intergenic
CCAGCCGGAGCCGGAGCCGG+AGG 0.542388 7.2:-30278401 None:intergenic
TGAGAGTCCCGATGGTGCTC+CGG 0.544734 7.2:+30278424 MS.gene27579:CDS
GAGTGGTGCCATTGGTGAGT+TGG 0.544988 7.2:-30277608 None:intergenic
TGATCGGAGCTGTGATTTCG+AGG 0.545737 7.2:-30277800 None:intergenic
GCAGAAGCAGGTGTCGGTGA+AGG 0.547162 7.2:-30278338 None:intergenic
CTAAGACGGTGATGGTTTGG+CGG 0.548620 7.2:-30277473 None:intergenic
GCTGCTAAATATCTTCCCAT+TGG 0.550430 7.2:+30278074 MS.gene27579:CDS
TGCTTCTGCTCCTTCACCGG+CGG 0.552323 7.2:+30278352 MS.gene27579:CDS
TAAGACGGTGATGGTTTGGC+GGG 0.555575 7.2:-30277472 None:intergenic
GATTACACTGTTACAACTGC+CGG 0.555613 7.2:+30278158 MS.gene27579:CDS
GACGGATCCGATGTTGTTGA+CGG 0.556586 7.2:-30277664 None:intergenic
GAGTTTAGAGCCGGGAGCAG+CGG 0.559118 7.2:-30277727 None:intergenic
AGGATACCGGGAGCGATGAT+CGG 0.559985 7.2:-30277816 None:intergenic
GATGTTGTGGGCGGAGATTG+TGG 0.561060 7.2:-30277367 None:intergenic
GCATCGCTTATCTCATCCAA+CGG 0.561376 7.2:+30277909 MS.gene27579:CDS
AAGAGAATGCGGCGTTGTTG+AGG 0.561650 7.2:-30277497 None:intergenic
CCATCGGGACTCTCACCAGC+CGG 0.564675 7.2:-30278416 None:intergenic
CCGGCTGGTGAGAGTCCCGA+TGG 0.565181 7.2:+30278416 MS.gene27579:CDS
TGATGCGCCGTCGACTGCGG+CGG 0.568393 7.2:+30278448 MS.gene27579:CDS
CGGCGAGTTTGGTTTGAGAG+AGG 0.568789 7.2:-30277437 None:intergenic
AGGTTAACGGAGGAGGAAGG+TGG 0.569691 7.2:-30277849 None:intergenic
GTAGGCGCATCCGCCGGTGA+AGG 0.570599 7.2:-30278362 None:intergenic
GGCGAAGCTGGCAATGGAGT+AGG 0.573463 7.2:-30278380 None:intergenic
GGCTGATGCGCCGTCGACTG+CGG 0.575330 7.2:+30278445 MS.gene27579:CDS
ATGAAGTGTAACAGAATCAC+CGG 0.576578 7.2:-30278177 None:intergenic
GAAGTAGCAAACAGCTCCGA+TGG 0.576758 7.2:-30278284 None:intergenic
TGTTGTATTGGGAGTAGTCG+GGG 0.579767 7.2:-30277410 None:intergenic
CGGAGCTGTGATTTCGAGGA+CGG 0.584105 7.2:-30277796 None:intergenic
TTTGAGTGTGGGAAGTGAAG+TGG 0.588193 7.2:-30277270 None:intergenic
GTTGAGGACTAAGACGGTGA+TGG 0.588296 7.2:-30277481 None:intergenic
CGAGGACGGAGATATTGTAA+GGG 0.592002 7.2:-30277782 None:intergenic
AATGGAGTAGGCGCATCCGC+CGG 0.593139 7.2:-30278368 None:intergenic
GATGAGTCGAGTTTAGAGCC+GGG 0.594374 7.2:-30277735 None:intergenic
TCAACAGAGTAAATAGCAAG+AGG 0.595143 7.2:-30278248 None:intergenic
GATTCTGTTACACTTCATAC+CGG 0.596215 7.2:+30278182 MS.gene27579:CDS
TAGTGTTGTCGAAGTAGTCG+AGG 0.598199 7.2:-30277578 None:intergenic
ACCACCCTCTTCCAAACCAC+CGG 0.602359 7.2:+30277636 MS.gene27579:CDS
TGGCGATGGAGAGGATGAGG+AGG 0.603140 7.2:-30277344 None:intergenic
ACAGCTCCGATCATCGCTCC+CGG 0.603436 7.2:+30277810 MS.gene27579:CDS
GTTGTTGACGGCGTTGCCGG+TGG 0.605559 7.2:-30277652 None:intergenic
GGAGGAGGAAGGTGGTGGAG+CGG 0.606651 7.2:-30277841 None:intergenic
AATCGTTAAACCTTTATCAG+CGG 0.607866 7.2:-30277955 None:intergenic
GTTAGGTTAACGGAGGAGGA+AGG 0.609497 7.2:-30277852 None:intergenic
AAACTCCACCAACTCACCAA+TGG 0.611545 7.2:+30277600 MS.gene27579:CDS
TTTGACGACGGAGATAGGGT+GGG 0.613696 7.2:-30277532 None:intergenic
GGCAACGCCGTCAACAACAT+CGG 0.622693 7.2:+30277657 MS.gene27579:CDS
GTAGTCGAGGAGGACTAAGA+GGG 0.625311 7.2:-30277565 None:intergenic
GAAGGAGCAGAAGCAGGTGT+CGG 0.631537 7.2:-30278344 None:intergenic
GCCGGTGGTTTGGAAGAGGG+TGG 0.634462 7.2:-30277637 None:intergenic
GACGACGGAGATAGGGTGGG+AGG 0.635668 7.2:-30277529 None:intergenic
AGATTGTGGTGGCGATGGAG+AGG 0.636808 7.2:-30277353 None:intergenic
AAGAGTGAGAGAGTTAAAGG+TGG 0.639684 7.2:-30277247 None:intergenic
GGAGGTGATGGAAGAGAATG+CGG 0.642997 7.2:-30277508 None:intergenic
GATTTCGGTGATGTTGTGGG+CGG 0.675153 7.2:-30277376 None:intergenic
AATTCTCGAAGAATCAACTC+CGG 0.685415 7.2:-30278201 None:intergenic
AACATCACCGACTTAAAAGG+CGG 0.693932 7.2:+30277687 MS.gene27579:CDS
TGTTGTCGAAGTAGTCGAGG+AGG 0.701272 7.2:-30277575 None:intergenic
GTTGTGGGCGGAGATTGTGG+TGG 0.702975 7.2:-30277364 None:intergenic
GTAGTGTGTGCGTGTCTGTG+GGG 0.709486 7.2:-30277208 None:intergenic
GGCGTTGTTGAGGACTAAGA+CGG 0.713613 7.2:-30277487 None:intergenic
TAAAGCGGTTAGGTTAACGG+AGG 0.718371 7.2:-30277859 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAGTGTAATCAAATTTTC+CGG - chr7.2:30278150-30278169 None:intergenic 25.0%
!! ATTGTAAGGGATTTGTTTAA+CGG - chr7.2:30277772-30277791 None:intergenic 25.0%
AATCGTTAAACCTTTATCAG+CGG - chr7.2:30277958-30277977 None:intergenic 30.0%
TATTAAAGCGGTTAGGTTAA+CGG - chr7.2:30277865-30277884 None:intergenic 30.0%
TTTGAAAGCTTGGTTAAATC+TGG - chr7.2:30278020-30278039 None:intergenic 30.0%
! CTTTTTCTATTAAAGCGGTT+AGG - chr7.2:30277872-30277891 None:intergenic 30.0%
! GTAGTTTTCAAAGATCCAAT+GGG - chr7.2:30278092-30278111 None:intergenic 30.0%
!! ATTTCTAGTTTAGCTGCAAA+CGG + chr7.2:30278122-30278141 MS.gene27579:CDS 30.0%
!!! AAAGGTTTTGATTAAACCGT+TGG - chr7.2:30277928-30277947 None:intergenic 30.0%
AATTCTCGAAGAATCAACTC+CGG - chr7.2:30278204-30278223 None:intergenic 35.0%
ACCGCTTTAATAGAAAAAGC+CGG + chr7.2:30277873-30277892 MS.gene27579:CDS 35.0%
ATGAAGTGTAACAGAATCAC+CGG - chr7.2:30278180-30278199 None:intergenic 35.0%
CAAGCTTTCAAATGCTGAAT+TGG + chr7.2:30278028-30278047 MS.gene27579:CDS 35.0%
CAATTCAGCATTTGAAAGCT+TGG - chr7.2:30278030-30278049 None:intergenic 35.0%
GATTCTGTTACACTTCATAC+CGG + chr7.2:30278182-30278201 MS.gene27579:CDS 35.0%
TCAACAGAGTAAATAGCAAG+AGG - chr7.2:30278251-30278270 None:intergenic 35.0%
TCTTTCTCTCTCTCCAAAAT+GGG + chr7.2:30277300-30277319 MS.gene27579:CDS 35.0%
TTCTTCGAGAATTGCTGATA+CGG + chr7.2:30278211-30278230 MS.gene27579:CDS 35.0%
TTTATCAGCGGTTGATTGAA+AGG - chr7.2:30277946-30277965 None:intergenic 35.0%
TTTCAATCAACCGCTGATAA+AGG + chr7.2:30277945-30277964 MS.gene27579:CDS 35.0%
! CGTAGTTTTCAAAGATCCAA+TGG - chr7.2:30278093-30278112 None:intergenic 35.0%
!! ACCGGCTTTTTCTATTAAAG+CGG - chr7.2:30277877-30277896 None:intergenic 35.0%
!! AGGGATTTGTTTAACGGATT+TGG - chr7.2:30277766-30277785 None:intergenic 35.0%
!! GCTTTAAAAGCTTCATCGTT+GGG - chr7.2:30277987-30278006 None:intergenic 35.0%
!! TTTTAAGTCGGTGATGTTGA+CGG - chr7.2:30277685-30277704 None:intergenic 35.0%
!!! ATTTTTTTGACGACGGAGAT+AGG - chr7.2:30277540-30277559 None:intergenic 35.0%
!!! GATGAAGCTTTTAAAGCGAA+AGG + chr7.2:30277990-30278009 MS.gene27579:CDS 35.0%
!!! TTTTTTTGACGACGGAGATA+GGG - chr7.2:30277539-30277558 None:intergenic 35.0%
AAAGAGAGATGGTTTGAGTG+TGG - chr7.2:30277285-30277304 None:intergenic 40.0%
AAGAGAGATGGTTTGAGTGT+GGG - chr7.2:30277284-30277303 None:intergenic 40.0%
AAGAGTGAGAGAGTTAAAGG+TGG - chr7.2:30277250-30277269 None:intergenic 40.0%
CTCTTTCTCTCTCTCCAAAA+TGG + chr7.2:30277299-30277318 MS.gene27579:CDS 40.0%
GACTTAAAAGGCGGTAAAGT+CGG + chr7.2:30277696-30277715 MS.gene27579:CDS 40.0%
GATTACACTGTTACAACTGC+CGG + chr7.2:30278158-30278177 MS.gene27579:CDS 40.0%
GCTGCTAAATATCTTCCCAT+TGG + chr7.2:30278074-30278093 MS.gene27579:CDS 40.0%
TGGAAGAGTGAGAGAGTTAA+AGG - chr7.2:30277253-30277272 None:intergenic 40.0%
! AAGAGTTCTGGTAAATCTGC+TGG + chr7.2:30278473-30278492 MS.gene27579:CDS 40.0%
! CGATGCAAATGTTTTGCAAC+CGG - chr7.2:30277895-30277914 None:intergenic 40.0%
! GAGAATTGCTGATACGGTTT+TGG + chr7.2:30278217-30278236 MS.gene27579:CDS 40.0%
! TGATAGTGTGCTTCTTCCAT+CGG + chr7.2:30278268-30278287 MS.gene27579:CDS 40.0%
!! AACATCACCGACTTAAAAGG+CGG + chr7.2:30277687-30277706 MS.gene27579:CDS 40.0%
!! AGAGAGGAAGGTGTTGTATT+GGG - chr7.2:30277424-30277443 None:intergenic 40.0%
!! CGCTTTAAAAGCTTCATCGT+TGG - chr7.2:30277988-30278007 None:intergenic 40.0%
!! GACTTTACCGCCTTTTAAGT+CGG - chr7.2:30277697-30277716 None:intergenic 40.0%
!! GTCAACATCACCGACTTAAA+AGG + chr7.2:30277684-30277703 MS.gene27579:CDS 40.0%
!!! GGAGAGGATTTTTTTGACGA+CGG - chr7.2:30277547-30277566 None:intergenic 40.0%
AAACTCCACCAACTCACCAA+TGG + chr7.2:30277600-30277619 MS.gene27579:CDS 45.0%
AGAGGATTTCGGTGATGTTG+TGG - chr7.2:30277383-30277402 None:intergenic 45.0%
CGAGGACGGAGATATTGTAA+GGG - chr7.2:30277785-30277804 None:intergenic 45.0%
GAGGATTTCGGTGATGTTGT+GGG - chr7.2:30277382-30277401 None:intergenic 45.0%
GCATCGCTTATCTCATCCAA+CGG + chr7.2:30277909-30277928 MS.gene27579:CDS 45.0%
GTGTTGTATTGGGAGTAGTC+GGG - chr7.2:30277414-30277433 None:intergenic 45.0%
TAAAGCGGTTAGGTTAACGG+AGG - chr7.2:30277862-30277881 None:intergenic 45.0%
TAGTGTTGTCGAAGTAGTCG+AGG - chr7.2:30277581-30277600 None:intergenic 45.0%
TCGAGGACGGAGATATTGTA+AGG - chr7.2:30277786-30277805 None:intergenic 45.0%
TGGAGAGAGAGAAAGAGAGA+TGG - chr7.2:30277296-30277315 None:intergenic 45.0%
TGTTGTATTGGGAGTAGTCG+GGG - chr7.2:30277413-30277432 None:intergenic 45.0%
TTTGAGTGTGGGAAGTGAAG+TGG - chr7.2:30277273-30277292 None:intergenic 45.0%
! AGATGAGTCGAGTTTAGAGC+CGG - chr7.2:30277739-30277758 None:intergenic 45.0%
! GGTGTTGTATTGGGAGTAGT+CGG - chr7.2:30277415-30277434 None:intergenic 45.0%
! GTTTGCTACTTCACCTTCTC+CGG + chr7.2:30278295-30278314 MS.gene27579:CDS 45.0%
!! GACTGCTTTGTCTGCTTTTG+TGG + chr7.2:30278535-30278554 MS.gene27579:CDS 45.0%
!! GAGAGAGGAAGGTGTTGTAT+TGG - chr7.2:30277425-30277444 None:intergenic 45.0%
!! GAGTTTGGTTTGAGAGAGGA+AGG - chr7.2:30277436-30277455 None:intergenic 45.0%
AAGAGAATGCGGCGTTGTTG+AGG - chr7.2:30277500-30277519 None:intergenic 50.0%
AGTAGTCGAGGAGGACTAAG+AGG - chr7.2:30277569-30277588 None:intergenic 50.0%
AGTTTAGCTGCAAACGGTGC+CGG + chr7.2:30278128-30278147 MS.gene27579:CDS 50.0%
ATGTAGTGTGTGCGTGTCTG+TGG - chr7.2:30277213-30277232 None:intergenic 50.0%
GAAGTAGCAAACAGCTCCGA+TGG - chr7.2:30278287-30278306 None:intergenic 50.0%
GACGGATCCGATGTTGTTGA+CGG - chr7.2:30277667-30277686 None:intergenic 50.0%
GATTTCGGTGATGTTGTGGG+CGG - chr7.2:30277379-30277398 None:intergenic 50.0%
GGCGTTGTTGAGGACTAAGA+CGG - chr7.2:30277490-30277509 None:intergenic 50.0%
GGTGTGAACGTGAAAGCTTC+TGG + chr7.2:30278494-30278513 MS.gene27579:CDS 50.0%
GTAGTCGAGGAGGACTAAGA+GGG - chr7.2:30277568-30277587 None:intergenic 50.0%
GTTAGGTTAACGGAGGAGGA+AGG - chr7.2:30277855-30277874 None:intergenic 50.0%
GTTGAGGACTAAGACGGTGA+TGG - chr7.2:30277484-30277503 None:intergenic 50.0%
TGATCGGAGCTGTGATTTCG+AGG - chr7.2:30277803-30277822 None:intergenic 50.0%
TGTAGTGTGTGCGTGTCTGT+GGG - chr7.2:30277212-30277231 None:intergenic 50.0%
TGTTGTCGAAGTAGTCGAGG+AGG - chr7.2:30277578-30277597 None:intergenic 50.0%
TTTGACGACGGAGATAGGGT+GGG - chr7.2:30277535-30277554 None:intergenic 50.0%
! AAAGGCGGTAAAGTCGGCTT+CGG + chr7.2:30277702-30277721 MS.gene27579:CDS 50.0%
! CTAAGACGGTGATGGTTTGG+CGG - chr7.2:30277476-30277495 None:intergenic 50.0%
! GAGAGAGTGGTGACCCATTT+TGG - chr7.2:30277316-30277335 None:intergenic 50.0%
! GATGAGTCGAGTTTAGAGCC+GGG - chr7.2:30277738-30277757 None:intergenic 50.0%
! GGACTAAGACGGTGATGGTT+TGG - chr7.2:30277479-30277498 None:intergenic 50.0%
! GTTGATTTCGTCGGCGAGTT+TGG - chr7.2:30277451-30277470 None:intergenic 50.0%
! TAAGACGGTGATGGTTTGGC+GGG - chr7.2:30277475-30277494 None:intergenic 50.0%
! TTGGCGGGAGTTGATTTCGT+CGG - chr7.2:30277460-30277479 None:intergenic 50.0%
! TTTTGACGACGGAGATAGGG+TGG - chr7.2:30277536-30277555 None:intergenic 50.0%
!! GGAGGTGATGGAAGAGAATG+CGG - chr7.2:30277511-30277530 None:intergenic 50.0%
ACCACCCTCTTCCAAACCAC+CGG + chr7.2:30277636-30277655 MS.gene27579:CDS 55.0%
ACCTGCTTCTGCTCCTTCAC+CGG + chr7.2:30278349-30278368 MS.gene27579:CDS 55.0%
AGCGGTTAGGTTAACGGAGG+AGG - chr7.2:30277859-30277878 None:intergenic 55.0%
AGGATACCGGGAGCGATGAT+CGG - chr7.2:30277819-30277838 None:intergenic 55.0%
AGGTTAACGGAGGAGGAAGG+TGG - chr7.2:30277852-30277871 None:intergenic 55.0%
CGGAGCTGTGATTTCGAGGA+CGG - chr7.2:30277799-30277818 None:intergenic 55.0%
GAAGGAGCAGAAGCAGGTGT+CGG - chr7.2:30278347-30278366 None:intergenic 55.0%
GATGTTGTGGGCGGAGATTG+TGG - chr7.2:30277370-30277389 None:intergenic 55.0%
GATGTTGTTGACGGCGTTGC+CGG - chr7.2:30277658-30277677 None:intergenic 55.0%
GGCAACGCCGTCAACAACAT+CGG + chr7.2:30277657-30277676 MS.gene27579:CDS 55.0%
GGGGTTGGAGGAGAGGATTT+CGG - chr7.2:30277394-30277413 None:intergenic 55.0%
GTAGTGTGTGCGTGTCTGTG+GGG - chr7.2:30277211-30277230 None:intergenic 55.0%
GTATTGGGAGTAGTCGGGGT+TGG - chr7.2:30277409-30277428 None:intergenic 55.0%
TACTTCACCTTCTCCGGCAC+CGG + chr7.2:30278301-30278320 MS.gene27579:CDS 55.0%
TTAACGGAGGAGGAAGGTGG+TGG - chr7.2:30277849-30277868 None:intergenic 55.0%
! AGATTGTGGTGGCGATGGAG+AGG - chr7.2:30277356-30277375 None:intergenic 55.0%
! GTTGCCGGTGGTTTGGAAGA+GGG - chr7.2:30277643-30277662 None:intergenic 55.0%
!! CGGCGAGTTTGGTTTGAGAG+AGG - chr7.2:30277440-30277459 None:intergenic 55.0%
!! GAGTGGTGCCATTGGTGAGT+TGG - chr7.2:30277611-30277630 None:intergenic 55.0%
!! TGGTGCCATTGGTGAGTTGG+TGG - chr7.2:30277608-30277627 None:intergenic 55.0%
AATGGAGTAGGCGCATCCGC+CGG - chr7.2:30278371-30278390 None:intergenic 60.0%
ACAGCTCCGATCATCGCTCC+CGG + chr7.2:30277810-30277829 MS.gene27579:CDS 60.0%
ACTGCGGCGGAGAAGAGTTC+TGG + chr7.2:30278461-30278480 MS.gene27579:CDS 60.0%
AGTAGTCGGGGTTGGAGGAG+AGG - chr7.2:30277401-30277420 None:intergenic 60.0%
CGAGGAGGACTAAGAGGGAG+AGG - chr7.2:30277563-30277582 None:intergenic 60.0%
CGATGGAGAGGATGAGGAGG+AGG - chr7.2:30277344-30277363 None:intergenic 60.0%
GATAGGGTGGGAGGAGGTGA+TGG - chr7.2:30277523-30277542 None:intergenic 60.0%
GGAGGAGGAGGATGAGAGAG+TGG - chr7.2:30277329-30277348 None:intergenic 60.0%
GGCGAAGCTGGCAATGGAGT+AGG - chr7.2:30278383-30278402 None:intergenic 60.0%
GTTGTGGGCGGAGATTGTGG+TGG - chr7.2:30277367-30277386 None:intergenic 60.0%
TCCATTGCCAGCTTCGCCTC+CGG + chr7.2:30278385-30278404 MS.gene27579:CDS 60.0%
TGAGAGTCCCGATGGTGCTC+CGG + chr7.2:30278424-30278443 MS.gene27579:CDS 60.0%
TGCTTCTGCTCCTTCACCGG+CGG + chr7.2:30278352-30278371 MS.gene27579:CDS 60.0%
TGGAGAGGATGAGGAGGAGG+AGG - chr7.2:30277341-30277360 None:intergenic 60.0%
TGGCGATGGAGAGGATGAGG+AGG - chr7.2:30277347-30277366 None:intergenic 60.0%
TGGTGGAGCGGTGAGGATAC+CGG - chr7.2:30277832-30277851 None:intergenic 60.0%
TTGGGAGTAGTCGGGGTTGG+AGG - chr7.2:30277406-30277425 None:intergenic 60.0%
! CGTTGCCGGTGGTTTGGAAG+AGG - chr7.2:30277644-30277663 None:intergenic 60.0%
! GAGTTTAGAGCCGGGAGCAG+CGG - chr7.2:30277730-30277749 None:intergenic 60.0%
! GGTGGTTTGGAAGAGGGTGG+TGG - chr7.2:30277637-30277656 None:intergenic 60.0%
! TGGTGGCGATGGAGAGGATG+AGG - chr7.2:30277350-30277369 None:intergenic 60.0%
!! GAAGAGGGTGGTGGAGAGAG+TGG - chr7.2:30277628-30277647 None:intergenic 60.0%
!! GCAGAAGCAGGTGTCGGTGA+AGG - chr7.2:30278341-30278360 None:intergenic 60.0%
!! GGTGGAGAGAGTGGTGCCAT+TGG - chr7.2:30277619-30277638 None:intergenic 60.0%
CCATCGGGACTCTCACCAGC+CGG - chr7.2:30278419-30278438 None:intergenic 65.0%
CTCTTCTCCGCCGCAGTCGA+CGG - chr7.2:30278458-30278477 None:intergenic 65.0%
GACGACGGAGATAGGGTGGG+AGG - chr7.2:30277532-30277551 None:intergenic 65.0%
GACGGAGATAGGGTGGGAGG+AGG - chr7.2:30277529-30277548 None:intergenic 65.0%
GCCGGTGAAGGAGCAGAAGC+AGG - chr7.2:30278353-30278372 None:intergenic 65.0%
GGTGGAGCGGTGAGGATACC+GGG - chr7.2:30277831-30277850 None:intergenic 65.0%
GTTGTTGACGGCGTTGCCGG+TGG - chr7.2:30277655-30277674 None:intergenic 65.0%
TGACGGCGTTGCCGGTGGTT+TGG - chr7.2:30277650-30277669 None:intergenic 65.0%
! CGCATCAGCCGGAGCACCAT+CGG - chr7.2:30278435-30278454 None:intergenic 65.0%
! GCATCAGCCGGAGCACCATC+GGG - chr7.2:30278434-30278453 None:intergenic 65.0%
! GCCGGTGGTTTGGAAGAGGG+TGG - chr7.2:30277640-30277659 None:intergenic 65.0%
! GGCGGAGATTGTGGTGGCGA+TGG - chr7.2:30277361-30277380 None:intergenic 65.0%
!! AGGAAGGTGGTGGAGCGGTG+AGG - chr7.2:30277839-30277858 None:intergenic 65.0%
!! GAAGGAGCACCAGCAGGCTC+CGG - chr7.2:30278323-30278342 None:intergenic 65.0%
!! GGAGGAGGAAGGTGGTGGAG+CGG - chr7.2:30277844-30277863 None:intergenic 65.0%
!! GTCGGTGAAGGAGCACCAGC+AGG - chr7.2:30278329-30278348 None:intergenic 65.0%
CCGGCTGGTGAGAGTCCCGA+TGG + chr7.2:30278416-30278435 MS.gene27579:CDS 70.0%
GCAGTCGACGGCGCATCAGC+CGG - chr7.2:30278446-30278465 None:intergenic 70.0%
GCCGGAGGCGAAGCTGGCAA+TGG - chr7.2:30278389-30278408 None:intergenic 70.0%
GGACTCTCACCAGCCGGAGC+CGG - chr7.2:30278413-30278432 None:intergenic 70.0%
GTAGGCGCATCCGCCGGTGA+AGG - chr7.2:30278365-30278384 None:intergenic 70.0%
! GGCTGATGCGCCGTCGACTG+CGG + chr7.2:30278445-30278464 MS.gene27579:CDS 70.0%
! TGATGCGCCGTCGACTGCGG+CGG + chr7.2:30278448-30278467 MS.gene27579:CDS 70.0%
GCACCAGCAGGCTCCGGTGC+CGG - chr7.2:30278317-30278336 None:intergenic 75.0%
GCCAGCTTCGCCTCCGGCTC+CGG + chr7.2:30278391-30278410 MS.gene27579:CDS 75.0%
GGCTTCGGCTCCGCTGCTCC+CGG + chr7.2:30277717-30277736 MS.gene27579:CDS 75.0%
TCACCAGCCGGAGCCGGAGC+CGG - chr7.2:30278407-30278426 None:intergenic 75.0%
TTCGCCTCCGGCTCCGGCTC+CGG + chr7.2:30278397-30278416 MS.gene27579:CDS 75.0%
! GCAGGCTCCGGTGCCGGAGA+AGG - chr7.2:30278311-30278330 None:intergenic 75.0%
! TCTCCGGCACCGGAGCCTGC+TGG + chr7.2:30278311-30278330 MS.gene27579:CDS 75.0%
! GCCGGAGCCGGAGGCGAAGC+TGG - chr7.2:30278395-30278414 None:intergenic 80.0%
! CCAGCCGGAGCCGGAGCCGG+AGG - chr7.2:30278404-30278423 None:intergenic 85.0%
! CCTCCGGCTCCGGCTCCGGC+TGG + chr7.2:30278401-30278420 MS.gene27579:CDS 85.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 30277192 30278580 30277192 ID=MS.gene27579
chr7.2 mRNA 30277192 30278580 30277192 ID=MS.gene27579.t1;Parent=MS.gene27579
chr7.2 exon 30277192 30278580 30277192 ID=MS.gene27579.t1.exon1;Parent=MS.gene27579.t1
chr7.2 CDS 30277192 30278580 30277192 ID=cds.MS.gene27579.t1;Parent=MS.gene27579.t1
Gene Sequence

>MS.gene27579

ATGGTTAAAAAACAAACCCCACAGACACGCACACACTACATACAAACAGACACTGCCACCTTTAACTCTCTCACTCTTCCACTTCACTTCCCACACTCAAACCATCTCTCTTTCTCTCTCTCCAAAATGGGTCACCACTCTCTCATCCTCCTCCTCCTCATCCTCTCCATCGCCACCACAATCTCCGCCCACAACATCACCGAAATCCTCTCCTCCAACCCCGACTACTCCCAATACAACACCTTCCTCTCTCAAACCAAACTCGCCGACGAAATCAACTCCCGCCAAACCATCACCGTCTTAGTCCTCAACAACGCCGCATTCTCTTCCATCACCTCCTCCCACCCTATCTCCGTCGTCAAAAAAATCCTCTCCCTCTTAGTCCTCCTCGACTACTTCGACAACACTAAACTCCACCAACTCACCAATGGCACCACTCTCTCCACCACCCTCTTCCAAACCACCGGCAACGCCGTCAACAACATCGGATCCGTCAACATCACCGACTTAAAAGGCGGTAAAGTCGGCTTCGGCTCCGCTGCTCCCGGCTCTAAACTCGACTCATCTTACTCCAAATCCGTTAAACAAATCCCTTACAATATCTCCGTCCTCGAAATCACAGCTCCGATCATCGCTCCCGGTATCCTCACCGCTCCACCACCTTCCTCCTCCGTTAACCTAACCGCTTTAATAGAAAAAGCCGGTTGCAAAACATTTGCATCGCTTATCTCATCCAACGGTTTAATCAAAACCTTTCAATCAACCGCTGATAAAGGTTTAACGATTTTTGCACCCAACGATGAAGCTTTTAAAGCGAAAGGTGTTCCAGATTTAACCAAGCTTTCAAATGCTGAATTGGTTTCACTTTTACAGTATCATGCTGCTGCTAAATATCTTCCCATTGGATCTTTGAAAACTACGAAAGACGCTATTTCTAGTTTAGCTGCAAACGGTGCCGGAAAATTTGATTACACTGTTACAACTGCCGGTGATTCTGTTACACTTCATACCGGAGTTGATTCTTCGAGAATTGCTGATACGGTTTTGGATTCTACTCCTCTTGCTATTTACTCTGTTGATAGTGTGCTTCTTCCATCGGAGCTGTTTGCTACTTCACCTTCTCCGGCACCGGAGCCTGCTGGTGCTCCTTCACCGACACCTGCTTCTGCTCCTTCACCGGCGGATGCGCCTACTCCATTGCCAGCTTCGCCTCCGGCTCCGGCTCCGGCTGGTGAGAGTCCCGATGGTGCTCCGGCTGATGCGCCGTCGACTGCGGCGGAGAAGAGTTCTGGTAAATCTGCTGGTGTGAACGTGAAAGCTTCTGGTGTTTTTACTGTTGCAGTGACTGCTTTGTCTGCTTTTGTGGTTTCGTTTGTTTTTATGTCTTGA
Protein sequence

>MS.gene27579.t1

MVKKQTPQTRTHYIQTDTATFNSLTLPLHFPHSNHLSFSLSKMGHHSLILLLLILSIATTISAHNITEILSSNPDYSQYNTFLSQTKLADEINSRQTITVLVLNNAAFSSITSSHPISVVKKILSLLVLLDYFDNTKLHQLTNGTTLSTTLFQTTGNAVNNIGSVNITDLKGGKVGFGSAAPGSKLDSSYSKSVKQIPYNISVLEITAPIIAPGILTAPPPSSSVNLTALIEKAGCKTFASLISSNGLIKTFQSTADKGLTIFAPNDEAFKAKGVPDLTKLSNAELVSLLQYHAAAKYLPIGSLKTTKDAISSLAANGAGKFDYTVTTAGDSVTLHTGVDSSRIADTVLDSTPLAIYSVDSVLLPSELFATSPSPAPEPAGAPSPTPASAPSPADAPTPLPASPPAPAPAGESPDGAPADAPSTAAEKSSGKSAGVNVKASGVFTVAVTALSAFVVSFVFMS