Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27717.t1 | RHN46919.1 | 97.3 | 186 | 5 | 0 | 1 | 186 | 190 | 375 | 9.40E-104 | 386.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27717.t1 | A0A1D6GNR3 | 56.9 | 160 | 64 | 3 | 28 | 186 | 40 | 195 | 9.1e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27717.t1 | G7L3L3 | 97.3 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 6.8e-104 | 386.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene27717 | 0.82284 | 1.91E-53 | -1.69E-46 |
| MS.gene052447 | MS.gene27717 | 0.803003 | 4.29E-49 | -1.69E-46 |
| MS.gene054174 | MS.gene27717 | 0.820901 | 5.37E-53 | -1.69E-46 |
| MS.gene054175 | MS.gene27717 | 0.828107 | 1.08E-54 | -1.69E-46 |
| MS.gene054484 | MS.gene27717 | 0.830401 | 3.00E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27717.t1 | MTR_7g076970 | 97.312 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 9.15e-137 | 384 |
| MS.gene27717.t1 | MTR_7g077090 | 93.548 | 186 | 12 | 0 | 1 | 186 | 1 | 186 | 3.82e-133 | 375 |
| MS.gene27717.t1 | MTR_7g076770 | 87.097 | 186 | 24 | 0 | 1 | 186 | 1 | 186 | 9.62e-125 | 354 |
| MS.gene27717.t1 | MTR_7g077010 | 91.935 | 186 | 15 | 0 | 1 | 186 | 1 | 186 | 2.82e-121 | 345 |
| MS.gene27717.t1 | MTR_7g076920 | 88.172 | 186 | 21 | 1 | 1 | 186 | 1 | 185 | 2.94e-121 | 345 |
| MS.gene27717.t1 | MTR_7g012350 | 87.097 | 186 | 23 | 1 | 1 | 186 | 1 | 185 | 3.28e-121 | 345 |
| MS.gene27717.t1 | MTR_4g036410 | 98.742 | 159 | 2 | 0 | 28 | 186 | 9 | 167 | 2.48e-118 | 337 |
| MS.gene27717.t1 | MTR_7g012340 | 83.333 | 186 | 30 | 1 | 1 | 186 | 1 | 185 | 6.63e-116 | 332 |
| MS.gene27717.t1 | MTR_7g076990 | 84.946 | 186 | 27 | 1 | 1 | 186 | 1 | 185 | 2.05e-113 | 325 |
| MS.gene27717.t1 | MTR_4g036300 | 84.946 | 186 | 27 | 1 | 1 | 186 | 1 | 185 | 2.05e-113 | 325 |
| MS.gene27717.t1 | MTR_7g077110 | 81.183 | 186 | 34 | 1 | 1 | 186 | 1 | 185 | 4.00e-113 | 324 |
| MS.gene27717.t1 | MTR_4g036290 | 79.570 | 186 | 37 | 1 | 1 | 186 | 1 | 185 | 5.60e-110 | 317 |
| MS.gene27717.t1 | MTR_7g077050 | 79.032 | 186 | 36 | 1 | 1 | 186 | 1 | 183 | 1.34e-109 | 315 |
| MS.gene27717.t1 | MTR_7g076960 | 70.968 | 186 | 50 | 3 | 1 | 186 | 1 | 182 | 3.56e-91 | 269 |
| MS.gene27717.t1 | MTR_8g031170 | 63.068 | 176 | 65 | 0 | 11 | 186 | 14 | 189 | 2.39e-81 | 244 |
| MS.gene27717.t1 | MTR_7g077000 | 82.677 | 127 | 22 | 0 | 60 | 186 | 1 | 127 | 1.72e-76 | 229 |
| MS.gene27717.t1 | MTR_7g077040 | 67.333 | 150 | 23 | 1 | 23 | 172 | 1 | 124 | 1.95e-65 | 201 |
| MS.gene27717.t1 | MTR_8g031150 | 66.964 | 112 | 27 | 1 | 75 | 186 | 42 | 143 | 1.08e-44 | 149 |
| MS.gene27717.t1 | MTR_2g095130 | 57.364 | 129 | 53 | 2 | 59 | 186 | 90 | 217 | 2.07e-43 | 148 |
| MS.gene27717.t1 | MTR_8g031120 | 63.393 | 112 | 31 | 1 | 75 | 186 | 34 | 135 | 4.15e-42 | 142 |
| MS.gene27717.t1 | MTR_8g031160 | 55.039 | 129 | 41 | 3 | 60 | 186 | 7 | 120 | 1.69e-39 | 134 |
| MS.gene27717.t1 | MTR_2g095080 | 53.383 | 133 | 59 | 3 | 58 | 188 | 90 | 221 | 4.54e-33 | 121 |
| MS.gene27717.t1 | MTR_2g095060 | 49.045 | 157 | 71 | 5 | 38 | 188 | 65 | 218 | 1.09e-32 | 120 |
| MS.gene27717.t1 | MTR_3g088930 | 63.393 | 112 | 35 | 2 | 187 | 292 | 341 | 452 | 2.86e-25 | 105 |
| MS.gene27717.t1 | MTR_7g076950 | 52.326 | 86 | 32 | 3 | 1 | 78 | 1 | 85 | 1.53e-20 | 84.7 |
| MS.gene27717.t1 | MTR_3g061050 | 65.517 | 58 | 19 | 1 | 60 | 117 | 1 | 57 | 1.10e-18 | 80.1 |
| MS.gene27717.t1 | MTR_2g095170 | 57.143 | 63 | 27 | 0 | 58 | 120 | 86 | 148 | 5.30e-18 | 79.7 |
| MS.gene27717.t1 | MTR_7g076930 | 63.636 | 44 | 16 | 0 | 75 | 118 | 2 | 45 | 2.61e-14 | 66.6 |
| MS.gene27717.t1 | MTR_7g031470 | 33.858 | 127 | 72 | 6 | 178 | 292 | 331 | 457 | 2.98e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTATCATTGTGGATT+TGG | 0.204924 | 7.2:+28863761 | MS.gene27717:CDS |
| CAACAAAATAAAAGAAGTTT+TGG | 0.230362 | 7.2:-28862367 | None:intergenic |
| CTTGTTATCATTGTGGATTT+GGG | 0.312381 | 7.2:+28863762 | MS.gene27717:CDS |
| TGCTGAGTCTTGAACTGATC+TGG | 0.325937 | 7.2:-28863838 | None:intergenic |
| AGACCACCCCATTGCTCTTT+AGG | 0.343729 | 7.2:-28862873 | None:intergenic |
| GAAGCATCAACAATGTTGTT+TGG | 0.350738 | 7.2:-28862822 | None:intergenic |
| CCCGTTGTTGCACTTTCAAC+CGG | 0.351339 | 7.2:+28862663 | MS.gene27717:CDS |
| TTCTCTTGATTGCATTGTCC+TGG | 0.365128 | 7.2:-28862477 | None:intergenic |
| TTGTTCATCACATCCCTTTG+TGG | 0.385964 | 7.2:-28862778 | None:intergenic |
| AAATGTGCCTAAAGAGCAAT+GGG | 0.421227 | 7.2:+28862866 | MS.gene27717:CDS |
| ATTAAGAGTGAGATATGCTT+TGG | 0.423149 | 7.2:-28862571 | None:intergenic |
| CGTCCAAGCGGTAGAATTAG+AGG | 0.425326 | 7.2:+28862441 | MS.gene27717:CDS |
| GACTCATTTCTTAGTGAAGA+AGG | 0.430679 | 7.2:-28863597 | None:intergenic |
| AATAGAGTTGTTAAGACTGA+TGG | 0.466593 | 7.2:+28863624 | MS.gene27717:CDS |
| GATTCTGATTGTTGTGTACA+AGG | 0.466772 | 7.2:+28862501 | MS.gene27717:CDS |
| TGGACGACAGTTCTGAGCTT+CGG | 0.471843 | 7.2:-28862424 | None:intergenic |
| GCTCTTGTGGTTGAACCATC+CGG | 0.471995 | 7.2:-28862682 | None:intergenic |
| CTGATGGAAACTGTGTATCT+TGG | 0.489372 | 7.2:+28863640 | MS.gene27717:CDS |
| AATATTACCATTAGTGCGAA+TGG | 0.490898 | 7.2:+28862717 | MS.gene27717:CDS |
| CCGGTTGAAAGTGCAACAAC+GGG | 0.491101 | 7.2:-28862663 | None:intergenic |
| CACTAATGGTAATATTATTG+AGG | 0.493114 | 7.2:-28862710 | None:intergenic |
| TGCAACAACGGGAGTGTCAT+CGG | 0.498769 | 7.2:-28862652 | None:intergenic |
| CAACATTGTTGATGCTTCCA+AGG | 0.505059 | 7.2:+28862827 | MS.gene27717:CDS |
| AGATCAGTTCAAGACTCAGC+AGG | 0.509683 | 7.2:+28863840 | MS.gene27717:CDS |
| TTTCCTCTAATTCTACCGCT+TGG | 0.512589 | 7.2:-28862444 | None:intergenic |
| TATTGAGGCACCTGCTCTTG+TGG | 0.519617 | 7.2:-28862695 | None:intergenic |
| TTTGAAAAGGGTGGAGATGG+AGG | 0.519780 | 7.2:+28862597 | MS.gene27717:CDS |
| GCTGAGTCTTGAACTGATCT+GGG | 0.520569 | 7.2:-28863837 | None:intergenic |
| TAAAGCTTTCCACACAGCCT+TGG | 0.523613 | 7.2:-28862844 | None:intergenic |
| CATTGTTGTTAATTACTCGA+GGG | 0.528032 | 7.2:+28863791 | MS.gene27717:CDS |
| TTGTTGCACTTTCAACCGGA+TGG | 0.535631 | 7.2:+28862667 | MS.gene27717:CDS |
| TAAATGTGCCTAAAGAGCAA+TGG | 0.541938 | 7.2:+28862865 | MS.gene27717:CDS |
| GCATTGTTGTTAATTACTCG+AGG | 0.542950 | 7.2:+28863790 | MS.gene27717:CDS |
| CACAGAGACTCGTGGGAAGA+CGG | 0.546826 | 7.2:+28863695 | MS.gene27717:CDS |
| TCTTGATTGCATTGTCCTGG+AGG | 0.551630 | 7.2:-28862474 | None:intergenic |
| GGGGTGGTCTTGACATTACA+TGG | 0.556263 | 7.2:+28862886 | MS.gene27717:CDS |
| TGTTGTTTGGACAAGGAGGT+TGG | 0.556808 | 7.2:-28862809 | None:intergenic |
| AGAGGAAAGAAAGCTCCTCC+AGG | 0.562702 | 7.2:+28862459 | MS.gene27717:CDS |
| TGGAATTCTTGTTATCATTG+TGG | 0.563006 | 7.2:+28863755 | MS.gene27717:CDS |
| TCCGGTTGAAAGTGCAACAA+CGG | 0.569355 | 7.2:-28862664 | None:intergenic |
| GATGGTTCAACCACAAGAGC+AGG | 0.569777 | 7.2:+28862685 | MS.gene27717:CDS |
| TCAACAATGTTGTTTGGACA+AGG | 0.577465 | 7.2:-28862816 | None:intergenic |
| ATTTCTTAGTGAAGAAGGCA+AGG | 0.578615 | 7.2:-28863592 | None:intergenic |
| GAAAAGGGTGGAGATGGAGG+TGG | 0.579088 | 7.2:+28862600 | MS.gene27717:CDS |
| GCAAATGCAATTCATTCATG+AGG | 0.593689 | 7.2:+28863888 | MS.gene27717:CDS |
| CATATTGCACAGAGACTCGT+GGG | 0.607913 | 7.2:+28863688 | MS.gene27717:CDS |
| GCTCAGAACTGTCGTCCAAG+CGG | 0.618644 | 7.2:+28862429 | MS.gene27717:CDS |
| TCATATTGCACAGAGACTCG+TGG | 0.621958 | 7.2:+28863687 | MS.gene27717:CDS |
| TACTGCTTGTCACATTCTGA+AGG | 0.623840 | 7.2:-28862624 | None:intergenic |
| GATGAGTGTGACTCCACAAA+GGG | 0.624564 | 7.2:+28862765 | MS.gene27717:CDS |
| TTGTTGTTAATTACTCGAGG+GGG | 0.654827 | 7.2:+28863793 | MS.gene27717:CDS |
| ATTGTTGTTAATTACTCGAG+GGG | 0.659915 | 7.2:+28863792 | MS.gene27717:CDS |
| ACAATGTTGTTTGGACAAGG+AGG | 0.667279 | 7.2:-28862813 | None:intergenic |
| GATCAGTTCAAGACTCAGCA+GGG | 0.670914 | 7.2:+28863841 | MS.gene27717:CDS |
| GTGCCTAAAGAGCAATGGGG+TGG | 0.674878 | 7.2:+28862870 | MS.gene27717:CDS |
| TTGGTGTGAGTAGACACTGA+TGG | 0.681144 | 7.2:-28862552 | None:intergenic |
| TTGATGCTTCCAAGGCTGTG+TGG | 0.692840 | 7.2:+28862835 | MS.gene27717:CDS |
| TGATGAGTGTGACTCCACAA+AGG | 0.703489 | 7.2:+28862764 | MS.gene27717:CDS |
| GTCACACTCATCAACCACCA+TGG | 0.705411 | 7.2:-28862754 | None:intergenic |
| AATGTGCCTAAAGAGCAATG+GGG | 0.842697 | 7.2:+28862867 | MS.gene27717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAGTAGTTATAG+GGG | - | chr7.2:28863384-28863403 | None:intergenic | 15.0% |
| !! | AAGTACAAAATATCATTAAA+GGG | - | chr7.2:28863123-28863142 | None:intergenic | 15.0% |
| !! | CAAATAAATTAGTAGTTATA+GGG | - | chr7.2:28863385-28863404 | None:intergenic | 15.0% |
| !! | TAAGTACAAAATATCATTAA+AGG | - | chr7.2:28863124-28863143 | None:intergenic | 15.0% |
| !! | TCAAATAAATTAGTAGTTAT+AGG | - | chr7.2:28863386-28863405 | None:intergenic | 15.0% |
| !! | TTTCTTAATTTATAACAGAA+TGG | - | chr7.2:28863024-28863043 | None:intergenic | 15.0% |
| !!! | AACAAAATAAAAGAAGTTTT+GGG | - | chr7.2:28862369-28862388 | None:intergenic | 15.0% |
| !! | AATAAATTAGTAGTTATAGG+GGG | - | chr7.2:28863383-28863402 | None:intergenic | 20.0% |
| !! | AGTTTCTAATCAAATTTGAT+GGG | + | chr7.2:28863454-28863473 | MS.gene27717:intron | 20.0% |
| !!! | AAGCTAAACAAAATTTTAAG+TGG | + | chr7.2:28863286-28863305 | MS.gene27717:intron | 20.0% |
| !!! | AATTTGGAGTATTGATATAA+AGG | - | chr7.2:28863098-28863117 | None:intergenic | 20.0% |
| !!! | AATTTTTTATGCATTACTGA+TGG | + | chr7.2:28863254-28863273 | MS.gene27717:intron | 20.0% |
| !!! | ACAAAATAAAAGAAGTTTTG+GGG | - | chr7.2:28862368-28862387 | None:intergenic | 20.0% |
| !!! | ACTCTTAATAGTTTTGAAAA+GGG | + | chr7.2:28862585-28862604 | MS.gene27717:CDS | 20.0% |
| !!! | CAAAACTTCTTTTATTTTGT+TGG | + | chr7.2:28862368-28862387 | MS.gene27717:CDS | 20.0% |
| !!! | CAACAAAATAAAAGAAGTTT+TGG | - | chr7.2:28862370-28862389 | None:intergenic | 20.0% |
| !!! | TAAAGGCAAATATTCTATTT+TGG | - | chr7.2:28863081-28863100 | None:intergenic | 20.0% |
| ! | ATATCATTAAAGGGAGAATT+TGG | - | chr7.2:28863114-28863133 | None:intergenic | 25.0% |
| ! | CACTAATGGTAATATTATTG+AGG | - | chr7.2:28862713-28862732 | None:intergenic | 25.0% |
| ! | GAGTTTCTAATCAAATTTGA+TGG | + | chr7.2:28863453-28863472 | MS.gene27717:intron | 25.0% |
| ! | TATCACCAAAACTAAGATTA+TGG | - | chr7.2:28863548-28863567 | None:intergenic | 25.0% |
| !! | TTGGTGATATATCAAACAAT+AGG | + | chr7.2:28863559-28863578 | MS.gene27717:intron | 25.0% |
| !!! | CAAAATAAAAGAAGTTTTGG+GGG | - | chr7.2:28862367-28862386 | None:intergenic | 25.0% |
| !!! | CACTCTTAATAGTTTTGAAA+AGG | + | chr7.2:28862584-28862603 | MS.gene27717:CDS | 25.0% |
| !!! | CTAAACAAAATTTTAAGTGG+AGG | + | chr7.2:28863289-28863308 | MS.gene27717:intron | 25.0% |
| AAACCATAGAAACACAAACA+AGG | - | chr7.2:28862937-28862956 | None:intergenic | 30.0% | |
| AATAGAGTTGTTAAGACTGA+TGG | + | chr7.2:28863624-28863643 | MS.gene27717:CDS | 30.0% | |
| AATATTACCATTAGTGCGAA+TGG | + | chr7.2:28862717-28862736 | MS.gene27717:CDS | 30.0% | |
| AGTCCAGTTAAGATTGAAAT+CGG | - | chr7.2:28863501-28863520 | None:intergenic | 30.0% | |
| ATCCAAAATCACCTTAAATG+TGG | + | chr7.2:28863522-28863541 | MS.gene27717:intron | 30.0% | |
| ATTAAGAGTGAGATATGCTT+TGG | - | chr7.2:28862574-28862593 | None:intergenic | 30.0% | |
| ATTGACAAGTAGCATATTCA+TGG | + | chr7.2:28863153-28863172 | MS.gene27717:intron | 30.0% | |
| TAAGATTATGGCCACATTTA+AGG | - | chr7.2:28863536-28863555 | None:intergenic | 30.0% | |
| ! | AATCCTTGTTTGTGTTTCTA+TGG | + | chr7.2:28862931-28862950 | MS.gene27717:intron | 30.0% |
| ! | ATTGTTGTTAATTACTCGAG+GGG | + | chr7.2:28863792-28863811 | MS.gene27717:CDS | 30.0% |
| ! | CATTGTTGTTAATTACTCGA+GGG | + | chr7.2:28863791-28863810 | MS.gene27717:CDS | 30.0% |
| ! | CTTGTTATCATTGTGGATTT+GGG | + | chr7.2:28863762-28863781 | MS.gene27717:CDS | 30.0% |
| ! | TACCAAGTGCAAAATTTTGT+TGG | + | chr7.2:28863723-28863742 | MS.gene27717:CDS | 30.0% |
| ! | TCTTGTTATCATTGTGGATT+TGG | + | chr7.2:28863761-28863780 | MS.gene27717:CDS | 30.0% |
| ! | TGGAATTCTTGTTATCATTG+TGG | + | chr7.2:28863755-28863774 | MS.gene27717:CDS | 30.0% |
| !!! | CTTAATAGTTTTGAAAAGGG+TGG | + | chr7.2:28862588-28862607 | MS.gene27717:CDS | 30.0% |
| AAATGTGCCTAAAGAGCAAT+GGG | + | chr7.2:28862866-28862885 | MS.gene27717:CDS | 35.0% | |
| ATTTCTTAGTGAAGAAGGCA+AGG | - | chr7.2:28863595-28863614 | None:intergenic | 35.0% | |
| GACTCATTTCTTAGTGAAGA+AGG | - | chr7.2:28863600-28863619 | None:intergenic | 35.0% | |
| GATTCTGATTGTTGTGTACA+AGG | + | chr7.2:28862501-28862520 | MS.gene27717:CDS | 35.0% | |
| TAAATGTGCCTAAAGAGCAA+TGG | + | chr7.2:28862865-28862884 | MS.gene27717:CDS | 35.0% | |
| TCTCCGATTTCAATCTTAAC+TGG | + | chr7.2:28863495-28863514 | MS.gene27717:intron | 35.0% | |
| TGATGGGATGCTTAGTATTA+AGG | + | chr7.2:28863470-28863489 | MS.gene27717:intron | 35.0% | |
| ! | CACCAACAAAATTTTGCACT+TGG | - | chr7.2:28863728-28863747 | None:intergenic | 35.0% |
| ! | GAAGCATCAACAATGTTGTT+TGG | - | chr7.2:28862825-28862844 | None:intergenic | 35.0% |
| ! | GCATTGTTGTTAATTACTCG+AGG | + | chr7.2:28863790-28863809 | MS.gene27717:CDS | 35.0% |
| ! | TCAACAATGTTGTTTGGACA+AGG | - | chr7.2:28862819-28862838 | None:intergenic | 35.0% |
| ! | TGTGGCCATAATCTTAGTTT+TGG | + | chr7.2:28863540-28863559 | MS.gene27717:intron | 35.0% |
| ! | TTGTTGTTAATTACTCGAGG+GGG | + | chr7.2:28863793-28863812 | MS.gene27717:CDS | 35.0% |
| !! | ACTTTTTCCATTCGCACTAA+TGG | - | chr7.2:28862727-28862746 | None:intergenic | 35.0% |
| !! | TATTCATGGCCTTGTATCAT+AGG | + | chr7.2:28863167-28863186 | MS.gene27717:intron | 35.0% |
| !! | TGTCAGTTCGTTTTAATGCT+AGG | + | chr7.2:28863315-28863334 | MS.gene27717:intron | 35.0% |
| AATGTGCCTAAAGAGCAATG+GGG | + | chr7.2:28862867-28862886 | MS.gene27717:CDS | 40.0% | |
| CAACATTGTTGATGCTTCCA+AGG | + | chr7.2:28862827-28862846 | MS.gene27717:CDS | 40.0% | |
| CTGATGGAAACTGTGTATCT+TGG | + | chr7.2:28863640-28863659 | MS.gene27717:CDS | 40.0% | |
| TACTGCTTGTCACATTCTGA+AGG | - | chr7.2:28862627-28862646 | None:intergenic | 40.0% | |
| TAGTGCGAATGGAAAAAGTG+TGG | + | chr7.2:28862728-28862747 | MS.gene27717:CDS | 40.0% | |
| TCTGACCTACCTATGATACA+AGG | - | chr7.2:28863179-28863198 | None:intergenic | 40.0% | |
| TTCTCTTGATTGCATTGTCC+TGG | - | chr7.2:28862480-28862499 | None:intergenic | 40.0% | |
| TTGTTCATCACATCCCTTTG+TGG | - | chr7.2:28862781-28862800 | None:intergenic | 40.0% | |
| TTTCCTCTAATTCTACCGCT+TGG | - | chr7.2:28862447-28862466 | None:intergenic | 40.0% | |
| ! | ACAATGTTGTTTGGACAAGG+AGG | - | chr7.2:28862816-28862835 | None:intergenic | 40.0% |
| !! | CAGTTCGTTTTAATGCTAGG+TGG | + | chr7.2:28863318-28863337 | MS.gene27717:intron | 40.0% |
| !! | GGCCACATTTAAGGTGATTT+TGG | - | chr7.2:28863527-28863546 | None:intergenic | 40.0% |
| !!! | AATTTTGTTGGTGTCGTTGC+TGG | + | chr7.2:28863735-28863754 | MS.gene27717:CDS | 40.0% |
| !!! | AGTTTTGAAAAGGGTGGAGA+TGG | + | chr7.2:28862594-28862613 | MS.gene27717:CDS | 40.0% |
| AGATCAGTTCAAGACTCAGC+AGG | + | chr7.2:28863840-28863859 | MS.gene27717:CDS | 45.0% | |
| ATCATGCTTCTGCATGCTGT+TGG | + | chr7.2:28863431-28863450 | MS.gene27717:intron | 45.0% | |
| CATATTGCACAGAGACTCGT+GGG | + | chr7.2:28863688-28863707 | MS.gene27717:CDS | 45.0% | |
| GATCAGTTCAAGACTCAGCA+GGG | + | chr7.2:28863841-28863860 | MS.gene27717:CDS | 45.0% | |
| GATGAGTGTGACTCCACAAA+GGG | + | chr7.2:28862765-28862784 | MS.gene27717:CDS | 45.0% | |
| GCTGAGTCTTGAACTGATCT+GGG | - | chr7.2:28863840-28863859 | None:intergenic | 45.0% | |
| TAAAGCTTTCCACACAGCCT+TGG | - | chr7.2:28862847-28862866 | None:intergenic | 45.0% | |
| TCATATTGCACAGAGACTCG+TGG | + | chr7.2:28863687-28863706 | MS.gene27717:CDS | 45.0% | |
| TCTTGATTGCATTGTCCTGG+AGG | - | chr7.2:28862477-28862496 | None:intergenic | 45.0% | |
| TGATGAGTGTGACTCCACAA+AGG | + | chr7.2:28862764-28862783 | MS.gene27717:CDS | 45.0% | |
| TGCTGAGTCTTGAACTGATC+TGG | - | chr7.2:28863841-28863860 | None:intergenic | 45.0% | |
| TTGGTGTGAGTAGACACTGA+TGG | - | chr7.2:28862555-28862574 | None:intergenic | 45.0% | |
| TTGTTGCACTTTCAACCGGA+TGG | + | chr7.2:28862667-28862686 | MS.gene27717:CDS | 45.0% | |
| TTTGAAAAGGGTGGAGATGG+AGG | + | chr7.2:28862597-28862616 | MS.gene27717:CDS | 45.0% | |
| ! | AACAGCATGCAGAAGCATGA+TGG | - | chr7.2:28863432-28863451 | None:intergenic | 45.0% |
| ! | TCCGGTTGAAAGTGCAACAA+CGG | - | chr7.2:28862667-28862686 | None:intergenic | 45.0% |
| ! | TGCGAATGGAAAAAGTGTGG+TGG | + | chr7.2:28862731-28862750 | MS.gene27717:CDS | 45.0% |
| ! | TGTTGTTTGGACAAGGAGGT+TGG | - | chr7.2:28862812-28862831 | None:intergenic | 45.0% |
| !! | CATGGCCTTGTATCATAGGT+AGG | + | chr7.2:28863171-28863190 | MS.gene27717:intron | 45.0% |
| !!! | AAAATTTAAACATTATATTT+TGG | - | chr7.2:28863240-28863259 | None:intergenic | 5.0% |
| AGACCACCCCATTGCTCTTT+AGG | - | chr7.2:28862876-28862895 | None:intergenic | 50.0% | |
| AGAGGAAAGAAAGCTCCTCC+AGG | + | chr7.2:28862459-28862478 | MS.gene27717:CDS | 50.0% | |
| CCCGTTGTTGCACTTTCAAC+CGG | + | chr7.2:28862663-28862682 | MS.gene27717:CDS | 50.0% | |
| CGTCCAAGCGGTAGAATTAG+AGG | + | chr7.2:28862441-28862460 | MS.gene27717:CDS | 50.0% | |
| GATGGTTCAACCACAAGAGC+AGG | + | chr7.2:28862685-28862704 | MS.gene27717:CDS | 50.0% | |
| GCTCTTGTGGTTGAACCATC+CGG | - | chr7.2:28862685-28862704 | None:intergenic | 50.0% | |
| GTCACACTCATCAACCACCA+TGG | - | chr7.2:28862757-28862776 | None:intergenic | 50.0% | |
| TTGATGCTTCCAAGGCTGTG+TGG | + | chr7.2:28862835-28862854 | MS.gene27717:CDS | 50.0% | |
| ! | AAAAAGTGTGGTGGCCATGG+TGG | + | chr7.2:28862740-28862759 | MS.gene27717:CDS | 50.0% |
| ! | CCGGTTGAAAGTGCAACAAC+GGG | - | chr7.2:28862666-28862685 | None:intergenic | 50.0% |
| ! | GGGGTGGTCTTGACATTACA+TGG | + | chr7.2:28862886-28862905 | MS.gene27717:CDS | 50.0% |
| ! | TATTGAGGCACCTGCTCTTG+TGG | - | chr7.2:28862698-28862717 | None:intergenic | 50.0% |
| ! | TGGAAAAAGTGTGGTGGCCA+TGG | + | chr7.2:28862737-28862756 | MS.gene27717:CDS | 50.0% |
| !! | TGCAACAACGGGAGTGTCAT+CGG | - | chr7.2:28862655-28862674 | None:intergenic | 50.0% |
| !! | TGGACGACAGTTCTGAGCTT+CGG | - | chr7.2:28862427-28862446 | None:intergenic | 50.0% |
| CACAGAGACTCGTGGGAAGA+CGG | + | chr7.2:28863695-28863714 | MS.gene27717:CDS | 55.0% | |
| GAAAAGGGTGGAGATGGAGG+TGG | + | chr7.2:28862600-28862619 | MS.gene27717:CDS | 55.0% | |
| GCTCAGAACTGTCGTCCAAG+CGG | + | chr7.2:28862429-28862448 | MS.gene27717:CDS | 55.0% | |
| GTGCCTAAAGAGCAATGGGG+TGG | + | chr7.2:28862870-28862889 | MS.gene27717:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 28862351 | 28863908 | 28862351 | ID=MS.gene27717 |
| chr7.2 | mRNA | 28862351 | 28863908 | 28862351 | ID=MS.gene27717.t1;Parent=MS.gene27717 |
| chr7.2 | exon | 28862351 | 28862907 | 28862351 | ID=MS.gene27717.t1.exon1;Parent=MS.gene27717.t1 |
| chr7.2 | CDS | 28862351 | 28862907 | 28862351 | ID=cds.MS.gene27717.t1;Parent=MS.gene27717.t1 |
| chr7.2 | exon | 28863581 | 28863908 | 28863581 | ID=MS.gene27717.t1.exon2;Parent=MS.gene27717.t1 |
| chr7.2 | CDS | 28863581 | 28863908 | 28863581 | ID=cds.MS.gene27717.t1;Parent=MS.gene27717.t1 |
| Gene Sequence |
| Protein sequence |
