AlfalfaGEDB | MS.gene27862

M. sativa cultivar XinJiangDaYe / MS.gene27862

KEGG: -
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00350.26 PF01031.23 PF02212.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27862.t1	XP_003629868.1	86.5	679	86	3	1	678	1	674	0.00E+00	1111.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27862.t1	Q9ZP55	57.0	672	280	5	3	671	2	667	1.8e-207	723.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27862.t1	G7L7C1	86.5	679	86	3	1	678	1	674	0.0e+00	1111.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene27862	0.84269	2.22E-58	-1.69E-46
MS.gene058823	MS.gene27862	0.998069	2.03E-255	-1.69E-46
MS.gene058909	MS.gene27862	0.811315	7.45E-51	-1.69E-46
MS.gene058912	MS.gene27862	0.811498	6.80E-51	-1.69E-46
MS.gene05894	MS.gene27862	0.810758	9.83E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene014901	MS.gene27862	PPI
MS.gene27862	MS.gene32695	PPI
MS.gene80193	MS.gene27862	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27862.t1	MTR_8g087770	86.451	679	86	3	1	678	1	674	0.0	1195
MS.gene27862.t1	MTR_8g087750	82.712	671	111	3	6	675	11	677	0.0	1131
MS.gene27862.t1	MTR_8g087763	88.889	225	25	0	374	598	4	228	1.21e-144	425
MS.gene27862.t1	MTR_4g093750	34.491	403	235	14	67	452	35	425	2.83e-42	164
MS.gene27862.t1	MTR_4g093750	40.210	286	149	9	67	337	35	313	2.20e-41	161
MS.gene27862.t1	MTR_2g009690	37.261	314	185	6	63	366	40	351	5.56e-41	160
MS.gene27862.t1	MTR_5g009150	30.128	468	291	15	69	518	35	484	2.06e-34	139
MS.gene27862.t1	MTR_1g032550	35.336	283	163	7	69	337	35	311	2.34e-33	136
MS.gene27862.t1	MTR_8g105580	35.461	282	163	6	69	337	35	310	7.45e-33	134
MS.gene27862.t1	MTR_8g105580	35.461	282	163	6	69	337	35	310	7.97e-33	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27862.t1	AT1G60500	56.994	672	280	5	3	671	2	667	0.0	774
MS.gene27862.t1	AT1G60530	71.379	290	75	1	18	307	19	300	7.04e-143	419
MS.gene27862.t1	AT2G14120	29.955	444	288	10	25	452	1	437	2.07e-39	155
MS.gene27862.t1	AT2G14120	29.955	444	288	10	25	452	1	437	2.45e-39	155
MS.gene27862.t1	AT2G14120	29.955	444	288	10	25	452	1	437	2.81e-39	155
MS.gene27862.t1	AT2G14120	33.828	337	205	6	25	346	1	334	3.40e-39	155
MS.gene27862.t1	AT4G33650	29.571	443	268	11	35	452	29	452	5.03e-39	154
MS.gene27862.t1	AT4G33650	29.571	443	268	11	35	452	29	452	6.12e-39	154
MS.gene27862.t1	AT1G14830	32.903	310	196	6	69	369	35	341	5.06e-34	138
MS.gene27862.t1	AT5G42080	30.258	466	293	13	69	518	34	483	5.05e-33	135

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Find 126 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATAGATTTGTCTATCC+TGG	0.395168	4.1:-12967302	None:intergenic
AACGCTTGCTGTCGTGACAA+AGG	0.611997	4.1:+12967123	MS.gene27862:CDS
AAGAGTCTTACGAAGATGCA+AGG	0.624326	4.1:+12967239	MS.gene27862:CDS
AAGGCTGATAAATCTCCTGA+AGG	0.599516	4.1:+12967142	MS.gene27862:CDS
AAGGTCAGAAAAGCAGTTCT+TGG	0.424321	4.1:-12967727	None:intergenic
AATGAACTGTTATCAGCAAA+TGG	0.537861	4.1:+12968279	MS.gene27862:CDS
AATTCAGCATATCTACTAAT+CGG	0.340774	4.1:-12967591	None:intergenic
AATTTGTACAAGGGTACCTT+TGG	0.424069	4.1:+12966706	MS.gene27862:CDS
ACAATTGGTGCAACAGATAG+AGG	0.467988	4.1:-12966506	None:intergenic
ACACTTTCAACAAAATTAAT+TGG	0.173861	4.1:-12967784	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATAGATTTGTCTATCC+TGG	-	chr4.1:12967305-12967324	None:intergenic	30.0%
AATGAACTGTTATCAGCAAA+TGG	+	chr4.1:12968279-12968298	MS.gene27862:CDS	30.0%
AGGATAGACAAATCTATTGT+TGG	+	chr4.1:12967304-12967323	MS.gene27862:CDS	30.0%
ATTCAGCATATCTACTAATC+GGG	-	chr4.1:12967593-12967612	None:intergenic	30.0%
ATTCGGAAGACCAATAAATT+TGG	-	chr4.1:12967701-12967720	None:intergenic	30.0%
CTTACTTCAGAGAAAAGTTA+GGG	+	chr4.1:12967747-12967766	MS.gene27862:CDS	30.0%
TCTTTACTATCAAAGTCAGT+GGG	-	chr4.1:12966883-12966902	None:intergenic	30.0%
TTACTTCAGAGAAAAGTTAG+GGG	+	chr4.1:12967748-12967767	MS.gene27862:CDS	30.0%
TTCTAACTATTATCAGCTTC+AGG	+	chr4.1:12967855-12967874	MS.gene27862:CDS	30.0%
TTCTTTACTATCAAAGTCAG+TGG	-	chr4.1:12966884-12966903	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	12966410	12968446	12966410	ID=MS.gene27862
chr4.1	mRNA	12966410	12968446	12966410	ID=MS.gene27862.t1;Parent=MS.gene27862
chr4.1	exon	12966410	12968446	12966410	ID=MS.gene27862.t1.exon1;Parent=MS.gene27862.t1
chr4.1	CDS	12966410	12968446	12966410	ID=cds.MS.gene27862.t1;Parent=MS.gene27862.t1

Gene Sequence

>MS.gene27862

ATGACAATTGGAAACAAGAGTTCCACAAAGGCAAACAAACTTGATGAATCATCATCACTTGCATTAGTCCATGTTGATGTTGATGATCAACCTCAACCTCTATCTGTTGCACCAATTGTATCTTCTTATAATGAGAAGATACGTCCAGTGCTTGATGCTCTTGAAAATCTAAGGCGTCTCAACATTGCTAAAGAGGGAATTCAGCTTCCAACCATTGTTGTTGTTGGAGATCAATCATCTGGAAAGTCTAGTGTCCTTGAATCATTAGCTGGTATCAGCTTGCCACGTGGACAAGGAATTTGTACAAGGGTACCTTTGGTTATGAGGCTGCAAAACCATTTACTTCCACAGCCAGAGCTTGTTTTGGAGTATAATGGCAAACAACTTTCAACTGATGAGGAAAATGTATCTGATGCTATAAATACAGCCACTGAGGAGCTTGCTGGCACTGCCAAAGGGATTTCCAACACCCCACTGACTTTGATAGTAAAGAAGAATGGAGTTCCTGATCTTACTATGGTTGATCTTCCAGGTATAACTCGTGTTCCTGTTCATGGTCAACCTGATAACATTTATGATCAGATTAAGGATATTATCATGGAGTATATAACTCCTGAAGAGAGTATTATTTTGAATGTGCTCTCTGCTTCTGTTGATTTTACTACTTGTGAGTCGATAAGGATGTCACAAACTGTTGATAAAACTGGTTTGAGAACGCTTGCTGTCGTGACAAAGGCTGATAAATCTCCTGAAGGTTTGCTGGAGAAGGTTACAGCTGACGATGTTAACATTGGTCTTGGTTATGTTTGTGTAAGGAATCGAATTGGTGAAGAGTCTTACGAAGATGCAAGGAATGAAGAAGAGAAGCTGTTCGAGTGTCACACACTTCTGTCCAGGATAGACAAATCTATTGTTGGAATTCCTGTTTTGGCTCAAAAGCTTGTTCACGTTCAAGCGATGATTATATCTAAAACTTTGCCAGAGATCATTAAGAAGATTAATGAGAAACTGGCTACTAGTTTGCATGAGCTGGAAACTTTGCCTGCTAATTTATCCTCACTGGCTGATGCCATGTCAGCTTTTCTGCAAATCATTTCTTTGTCAAGAGACTCTCTGAAAAAAATTCTTCTTATAGGAGAGTTTGAAGAGTATTCTGATGAAAAGAAAATGCATTGCACAGCCCGATTAGTAGATATGCTGAATTCATATGCAAGTGAGCTTCAAAACTGTGTTGAAAGTAATGCCACTAAGGATTTCCTAATGGAGGAAATCAAAGTTCTTGAGGAAGCCAAATTTATTGGTCTTCCGAATTTCATGCCAAGAACTGCTTTTCTGACCTTACTTCAGAGAAAAGTTAGGGGCATTTCTTATATGCCAATTAATTTTGTTGAAAGTGTATGGAATTATCTGGAAACTGTTGTTGTTTCAGTTTTGAATCGTCATTCTTCTAACTATTATCAGCTTCAGGTTTCAATTCGTAGAGCTGCTGAGCACCTTATTGCTAAGAAGAAAAAGAATTCCATTCAGCATGTGCTTCAAGCTGTTGAGATGGAGAAGCTTACAGACTACACATGTAACCCTGAGTACTTGGAGGAGTATAACAAGCTGATGGCTCATCAAGAAGTGTTTTTGAAAGAAGTTTTGAATGTTAAACGAGCTTCAAGTACTGTGAAGCTGAAAGGTGTTGGTGACGTTGATGTTGTCCAGCTTATGAAATATCCACACATGTTGAATCAGGCTTATGATTTGAAGGCCAGATTGACAGCTTATTGGAAAATTGTGCTCCGGAGGTTAATTGATGTGATTGCTTTGCATTTGATGTTAAGCATCAATGAACTTGTGAATGTTGATCTGCAAAAGGAGATCTGTAATGAACTGTTATCAGCAAATGGTGGTGGTGTTGAGAGGCTGCTTGAGGAGTCTCCTTCAATATCAGGGAAGAGACAGAAGTTGAGCAGGAGTGTGACAGTTTTGAAAGAAAGCAAAGAGACCGTGGCCAACATTATGGACAGGATTGGAAATTATGGGGATAACTAG

Protein sequence

>MS.gene27862.t1

MTIGNKSSTKANKLDESSSLALVHVDVDDQPQPLSVAPIVSSYNEKIRPVLDALENLRRLNIAKEGIQLPTIVVVGDQSSGKSSVLESLAGISLPRGQGICTRVPLVMRLQNHLLPQPELVLEYNGKQLSTDEENVSDAINTATEELAGTAKGISNTPLTLIVKKNGVPDLTMVDLPGITRVPVHGQPDNIYDQIKDIIMEYITPEESIILNVLSASVDFTTCESIRMSQTVDKTGLRTLAVVTKADKSPEGLLEKVTADDVNIGLGYVCVRNRIGEESYEDARNEEEKLFECHTLLSRIDKSIVGIPVLAQKLVHVQAMIISKTLPEIIKKINEKLATSLHELETLPANLSSLADAMSAFLQIISLSRDSLKKILLIGEFEEYSDEKKMHCTARLVDMLNSYASELQNCVESNATKDFLMEEIKVLEEAKFIGLPNFMPRTAFLTLLQRKVRGISYMPINFVESVWNYLETVVVSVLNRHSSNYYQLQVSIRRAAEHLIAKKKKNSIQHVLQAVEMEKLTDYTCNPEYLEEYNKLMAHQEVFLKEVLNVKRASSTVKLKGVGDVDVVQLMKYPHMLNQAYDLKARLTAYWKIVLRRLIDVIALHLMLSINELVNVDLQKEICNELLSANGGGVERLLEESPSISGKRQKLSRSVTVLKESKETVANIMDRIGNYGDN