AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28072


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28072.t1 MTR_8g090215 100.000 157 0 0 1 157 51 207 4.91e-116 327
MS.gene28072.t1 MTR_3g087160 92.357 157 11 1 1 157 51 206 1.42e-104 298
MS.gene28072.t1 MTR_5g013900 80.892 157 30 0 1 157 51 207 2.70e-94 271
MS.gene28072.t1 MTR_4g098950 81.529 157 28 1 1 157 51 206 7.47e-94 270
MS.gene28072.t1 MTR_5g076590 43.802 121 68 0 1 121 52 172 3.55e-36 124
MS.gene28072.t1 MTR_8g031870 49.153 118 60 0 3 120 50 167 3.28e-35 121
MS.gene28072.t1 MTR_8g031680 47.458 118 62 0 3 120 50 167 5.57e-35 121
MS.gene28072.t1 MTR_1g094220 47.826 115 60 0 7 121 80 194 6.28e-35 120
MS.gene28072.t1 MTR_3g064390 42.975 121 69 0 1 121 52 172 6.59e-35 120
MS.gene28072.t1 MTR_8g103550 46.218 119 64 0 3 121 53 171 4.94e-34 118
MS.gene28072.t1 MTR_8g031660 46.610 118 63 0 3 120 50 167 1.46e-33 117
MS.gene28072.t1 MTR_1g094220 47.273 110 58 0 7 116 80 189 1.10e-32 115
MS.gene28072.t1 MTR_2g027660 42.373 118 68 0 3 120 50 167 1.18e-32 115
MS.gene28072.t1 MTR_6g021790 42.500 120 69 0 1 120 48 167 3.67e-32 114
MS.gene28072.t1 MTR_8g031830 50.476 105 52 0 8 112 55 159 5.85e-32 113
MS.gene28072.t1 MTR_1g094220 47.664 107 56 0 7 113 80 186 6.36e-32 113
MS.gene28072.t1 MTR_2g102060 41.463 123 68 1 3 121 54 176 1.49e-31 112
MS.gene28072.t1 MTR_1g094220 47.664 107 56 0 7 113 80 186 1.50e-31 113
MS.gene28072.t1 MTR_4g064897 35.758 165 93 3 1 156 54 214 3.35e-31 112
MS.gene28072.t1 MTR_7g081700 38.312 154 85 2 6 156 55 201 3.15e-30 108
MS.gene28072.t1 MTR_4g099470 37.086 151 91 1 6 156 31 177 6.69e-30 107
MS.gene28072.t1 MTR_2g005500 37.162 148 90 1 3 147 53 200 5.24e-29 105
MS.gene28072.t1 MTR_1g115325 36.538 156 95 3 3 155 59 213 1.11e-28 105
MS.gene28072.t1 MTR_8g006970 36.943 157 88 3 4 156 67 216 1.15e-28 105
MS.gene28072.t1 MTR_8g027220 43.243 111 63 0 6 116 73 183 1.56e-28 105
MS.gene28072.t1 MTR_2g005510 40.351 114 68 0 1 114 57 170 1.80e-28 105
MS.gene28072.t1 MTR_8g006970 42.609 115 66 0 6 120 55 169 1.93e-28 103
MS.gene28072.t1 MTR_8g036220 37.288 118 74 0 3 120 60 177 2.52e-28 104
MS.gene28072.t1 MTR_3g069510 33.742 163 96 2 3 156 56 215 2.89e-28 104
MS.gene28072.t1 MTR_1g068740 43.103 116 65 1 3 117 59 174 3.19e-28 104
MS.gene28072.t1 MTR_6g079550 39.655 116 70 0 5 120 58 173 3.51e-28 103
MS.gene28072.t1 MTR_3g086980 33.121 157 89 2 1 157 58 198 4.35e-28 103
MS.gene28072.t1 MTR_1g068730 43.103 116 65 1 3 117 59 174 4.95e-28 103
MS.gene28072.t1 MTR_7g100020 43.103 116 65 1 3 117 59 174 5.11e-28 103
MS.gene28072.t1 MTR_8g089985 37.931 116 72 0 1 116 59 174 8.95e-28 103
MS.gene28072.t1 MTR_7g405790 35.625 160 98 2 3 157 59 218 9.89e-28 103
MS.gene28072.t1 MTR_7g051940 35.849 159 97 2 3 157 57 214 3.02e-27 101
MS.gene28072.t1 MTR_1g062760 39.355 155 85 4 6 155 60 210 3.72e-27 101
MS.gene28072.t1 MTR_0262s0050 32.237 152 89 1 1 152 57 194 9.38e-27 100
MS.gene28072.t1 MTR_4g088090 37.069 116 73 0 1 116 55 170 1.33e-26 100
MS.gene28072.t1 MTR_1g052475 30.723 166 104 1 1 155 57 222 1.38e-26 100
MS.gene28072.t1 MTR_1g078200 38.793 116 71 0 1 116 56 171 2.21e-26 99.8
MS.gene28072.t1 MTR_1g090717 39.610 154 88 4 5 156 62 212 3.77e-26 98.6
MS.gene28072.t1 MTR_2g096550 41.026 117 67 2 3 117 59 175 7.24e-26 98.2
MS.gene28072.t1 MTR_4g079350 37.069 116 73 0 1 116 55 170 8.27e-26 98.2
MS.gene28072.t1 MTR_2g014990 37.719 114 71 0 3 116 57 170 9.10e-26 97.8
MS.gene28072.t1 MTR_7g103070 36.306 157 89 4 6 156 7 158 1.55e-25 95.9
MS.gene28072.t1 MTR_2g075950 35.965 114 73 0 3 116 57 170 1.73e-25 97.1
MS.gene28072.t1 MTR_4g063160 35.220 159 95 4 3 155 59 215 2.33e-25 96.7
MS.gene28072.t1 MTR_7g103070 36.306 157 89 4 6 156 63 214 1.24e-24 94.7
MS.gene28072.t1 MTR_2g090865 35.659 129 83 0 5 133 57 185 1.27e-24 94.7
MS.gene28072.t1 MTR_3g064390 43.529 85 48 0 1 85 52 136 6.45e-24 91.7
MS.gene28072.t1 MTR_2g083860 33.333 120 80 0 1 120 55 174 7.46e-24 92.8
MS.gene28072.t1 MTR_8g093740 39.655 116 68 2 3 116 23 138 1.20e-23 91.3
MS.gene28072.t1 MTR_8g093740 39.655 116 68 2 3 116 56 171 4.61e-23 90.5
MS.gene28072.t1 MTR_8g107070 34.228 149 92 2 3 150 58 201 8.08e-23 91.3
MS.gene28072.t1 MTR_3g096350 39.655 116 68 2 3 116 55 170 1.04e-22 89.7
MS.gene28072.t1 MTR_4g069850 36.810 163 87 6 3 157 52 206 1.96e-22 89.0
MS.gene28072.t1 MTR_4g012940 37.037 162 89 4 3 157 52 207 2.45e-22 88.6
MS.gene28072.t1 MTR_7g117910 36.082 97 62 0 3 99 64 160 4.64e-21 85.5
MS.gene28072.t1 MTR_2g101890 35.802 162 91 4 3 157 54 209 7.11e-21 85.1
MS.gene28072.t1 MTR_1g029450 37.069 116 71 2 3 116 60 175 1.36e-20 84.3
MS.gene28072.t1 MTR_1g097420 32.317 164 98 4 1 157 50 207 1.59e-19 81.3
MS.gene28072.t1 MTR_8g092020 30.488 164 99 5 1 157 54 209 2.29e-19 80.9
MS.gene28072.t1 MTR_1g097420 32.317 164 98 4 1 157 77 234 3.72e-19 80.9
MS.gene28072.t1 MTR_1g068730 39.286 84 51 0 3 86 59 142 1.19e-18 78.2
MS.gene28072.t1 MTR_1g068740 41.250 80 47 0 3 82 59 138 3.93e-18 77.4
MS.gene28072.t1 MTR_3g078260 37.398 123 64 4 3 113 51 172 5.34e-15 69.7
MS.gene28072.t1 MTR_6g039490 27.439 164 104 4 1 157 50 205 2.78e-14 67.8
MS.gene28072.t1 MTR_3g107717 33.333 120 77 3 8 127 62 178 7.44e-14 66.6
MS.gene28072.t1 MTR_3g107707 33.333 120 77 3 8 127 62 178 7.52e-14 66.6
MS.gene28072.t1 MTR_2g090875 34.959 123 67 4 3 113 49 170 7.59e-14 66.2
MS.gene28072.t1 MTR_3g107713 33.333 120 77 3 8 127 62 178 8.17e-14 66.6
MS.gene28072.t1 MTR_3g096350 40.964 83 47 2 3 83 55 137 8.68e-14 65.1
MS.gene28072.t1 MTR_3g096350 39.286 84 47 3 3 82 55 138 9.01e-14 65.1
MS.gene28072.t1 MTR_4g088055 34.146 123 68 4 3 113 49 170 3.03e-13 64.7
MS.gene28072.t1 MTR_4g113620 31.148 122 81 3 1 122 46 164 4.00e-13 64.7
MS.gene28072.t1 MTR_6g087980 36.441 118 62 4 8 113 54 170 7.81e-13 63.5
MS.gene28072.t1 MTR_1452s0010 46.552 58 31 0 3 60 25 82 3.96e-12 59.7
MS.gene28072.t1 MTR_4g073250 31.707 123 71 4 3 113 49 170 8.33e-12 60.8
MS.gene28072.t1 MTR_8g075240 31.933 119 68 4 7 113 53 170 2.61e-11 59.3
MS.gene28072.t1 MTR_5g022600 32.203 118 67 4 8 113 54 170 3.14e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28072.t1 AT2G22290 84.713 157 24 0 1 157 51 207 3.47e-99 284
MS.gene28072.t1 AT5G10260 84.713 157 24 0 1 157 51 207 3.70e-99 284
MS.gene28072.t1 AT2G44610 82.278 158 27 1 1 157 51 208 3.38e-95 274
MS.gene28072.t1 AT5G64990 75.484 155 37 1 4 157 52 206 1.65e-81 239
MS.gene28072.t1 AT4G39890 73.780 164 36 3 1 157 51 214 6.34e-80 236
MS.gene28072.t1 AT5G64990 72.222 162 37 2 4 157 52 213 1.18e-78 232
MS.gene28072.t1 AT4G19640 42.975 121 69 0 1 121 52 172 2.08e-35 122
MS.gene28072.t1 AT5G45130 42.975 121 69 0 1 121 52 172 3.24e-35 121
MS.gene28072.t1 AT5G45130 42.975 121 69 0 1 121 60 180 1.13e-34 120
MS.gene28072.t1 AT3G54840 47.826 115 60 0 7 121 48 162 2.33e-34 118
MS.gene28072.t1 AT3G54840 47.826 115 60 0 7 121 82 196 4.20e-34 119
MS.gene28072.t1 AT4G17170 36.250 160 95 2 3 155 50 209 5.91e-34 119
MS.gene28072.t1 AT4G35860 36.875 160 94 3 3 155 4 163 6.40e-33 114
MS.gene28072.t1 AT4G35860 36.875 160 94 3 3 155 50 209 3.10e-32 114
MS.gene28072.t1 AT3G54840 48.598 107 55 0 7 113 82 188 5.05e-32 113
MS.gene28072.t1 AT4G17160 40.678 118 70 0 3 120 50 167 3.58e-31 111
MS.gene28072.t1 AT5G03520 37.821 156 95 2 3 156 49 204 5.02e-31 111
MS.gene28072.t1 AT5G03520 37.821 156 95 2 3 156 59 214 5.24e-31 111
MS.gene28072.t1 AT3G11730 38.462 156 86 3 4 155 53 202 1.53e-30 110
MS.gene28072.t1 AT1G09630 41.525 118 69 0 1 118 54 171 2.32e-30 109
MS.gene28072.t1 AT1G05810 37.267 161 97 2 1 157 54 214 7.27e-30 108
MS.gene28072.t1 AT2G31680 37.654 162 96 2 1 157 54 215 1.08e-29 108
MS.gene28072.t1 AT1G07410 40.000 120 72 0 1 120 54 173 1.97e-29 107
MS.gene28072.t1 AT1G05810 37.267 161 97 2 1 157 100 260 2.00e-29 108
MS.gene28072.t1 AT1G02130 42.609 115 66 0 6 120 55 169 2.50e-29 106
MS.gene28072.t1 AT3G46830 39.474 114 69 0 3 116 56 169 1.46e-28 105
MS.gene28072.t1 AT3G46830 39.474 114 69 0 3 116 56 169 1.46e-28 105
MS.gene28072.t1 AT3G53610 37.419 155 88 3 3 156 59 205 1.63e-28 105
MS.gene28072.t1 AT3G53610 37.419 155 88 3 3 156 59 205 1.63e-28 105
MS.gene28072.t1 AT3G53610 37.419 155 88 3 3 156 59 205 1.63e-28 105
MS.gene28072.t1 AT5G59150 39.474 114 69 0 3 116 5 118 1.64e-28 103
MS.gene28072.t1 AT4G17530 36.129 155 91 2 4 156 53 201 2.19e-28 104
MS.gene28072.t1 AT5G59840 38.312 154 85 4 3 154 59 204 2.61e-28 104
MS.gene28072.t1 AT3G46060 38.312 154 85 4 3 154 59 204 3.49e-28 104
MS.gene28072.t1 AT3G46060 38.312 154 85 4 3 154 59 204 3.49e-28 104
MS.gene28072.t1 AT3G46060 38.312 154 85 4 3 154 59 204 3.49e-28 104
MS.gene28072.t1 AT5G47200 41.026 117 69 0 4 120 53 169 3.63e-28 103
MS.gene28072.t1 AT3G09900 37.888 161 90 3 3 156 59 216 3.73e-28 103
MS.gene28072.t1 AT5G47520 35.152 165 98 4 1 156 56 220 3.79e-28 104
MS.gene28072.t1 AT5G65270 36.207 116 74 0 1 116 59 174 5.62e-28 103
MS.gene28072.t1 AT5G59150 38.793 116 71 0 1 116 54 169 5.91e-28 103
MS.gene28072.t1 AT1G18200 43.119 109 62 0 5 113 59 167 9.12e-28 103
MS.gene28072.t1 AT5G47960 33.540 161 99 2 3 155 59 219 3.49e-27 101
MS.gene28072.t1 AT2G43130 35.220 159 98 2 1 155 54 211 3.87e-27 101
MS.gene28072.t1 AT1G73640 39.823 113 68 0 1 113 55 167 5.16e-27 101
MS.gene28072.t1 AT5G60860 32.895 152 84 1 1 134 55 206 8.23e-27 100
MS.gene28072.t1 AT3G12160 35.802 162 97 3 1 155 57 218 9.12e-27 100
MS.gene28072.t1 AT4G39990 34.167 120 79 0 1 120 59 178 1.54e-26 100
MS.gene28072.t1 AT3G15060 36.667 120 76 0 1 120 55 174 2.11e-26 99.8
MS.gene28072.t1 AT4G18430 32.258 155 87 1 1 137 55 209 4.19e-26 99.0
MS.gene28072.t1 AT1G28550 38.938 113 69 0 4 116 58 170 4.81e-26 98.6
MS.gene28072.t1 AT3G07410 42.342 111 64 0 3 113 56 166 2.01e-25 97.1
MS.gene28072.t1 AT3G09910 38.608 158 88 5 1 156 54 204 5.73e-25 95.5
MS.gene28072.t1 AT3G09910 38.608 158 88 5 1 156 54 204 5.73e-25 95.5
MS.gene28072.t1 AT3G09910 38.608 158 88 5 1 156 54 204 5.73e-25 95.5
MS.gene28072.t1 AT1G16920 33.333 120 80 0 1 120 55 174 1.08e-24 95.1
MS.gene28072.t1 AT2G33870 36.441 118 75 0 3 120 57 174 1.35e-24 95.1
MS.gene28072.t1 AT4G19640 43.023 86 49 0 1 86 52 137 2.08e-24 92.4
MS.gene28072.t1 AT5G45750 31.325 166 95 5 3 156 57 215 2.15e-24 94.4
MS.gene28072.t1 AT5G03530 38.217 157 86 6 6 156 59 210 2.77e-24 94.0
MS.gene28072.t1 AT5G03530 38.217 157 86 6 6 156 59 210 2.77e-24 94.0
MS.gene28072.t1 AT3G09910 41.176 119 68 2 1 117 54 172 3.88e-24 93.2
MS.gene28072.t1 AT3G09910 41.176 119 68 2 1 117 54 172 3.88e-24 93.2
MS.gene28072.t1 AT1G01200 35.329 167 95 5 3 157 72 237 6.79e-24 93.6
MS.gene28072.t1 AT4G19640 41.237 97 53 1 1 97 52 144 7.83e-24 92.4
MS.gene28072.t1 AT1G43890 40.157 127 72 3 5 129 58 182 3.40e-23 91.3
MS.gene28072.t1 AT1G43890 40.157 127 72 3 5 129 58 182 3.40e-23 91.3
MS.gene28072.t1 AT1G43890 40.157 127 72 3 5 129 58 182 3.40e-23 91.3
MS.gene28072.t1 AT1G06400 35.088 114 74 0 3 116 57 170 4.11e-23 90.9
MS.gene28072.t1 AT3G18820 37.423 163 86 6 3 157 52 206 5.14e-23 90.5
MS.gene28072.t1 AT4G18800 34.167 120 75 2 3 120 57 174 1.57e-22 89.4
MS.gene28072.t1 AT1G52280 36.420 162 89 4 3 157 52 206 5.36e-22 87.8
MS.gene28072.t1 AT3G16100 36.420 162 89 4 3 157 52 206 4.30e-20 82.8
MS.gene28072.t1 AT4G09720 34.146 164 94 6 1 157 16 172 5.04e-20 82.0
MS.gene28072.t1 AT4G09720 34.146 164 94 6 1 157 16 172 5.04e-20 82.0
MS.gene28072.t1 AT4G09720 34.146 164 94 6 1 157 16 172 5.04e-20 82.0
MS.gene28072.t1 AT4G09720 34.146 164 94 6 1 157 50 206 1.38e-19 81.6
MS.gene28072.t1 AT1G22740 32.927 164 93 6 1 157 50 203 1.41e-19 81.6
MS.gene28072.t1 AT5G39620 34.356 163 92 5 3 157 49 204 1.71e-19 81.3
MS.gene28072.t1 AT2G21880 33.918 171 90 6 1 157 26 187 2.73e-19 80.5
MS.gene28072.t1 AT2G21880 33.918 171 90 6 1 157 26 187 2.73e-19 80.5
MS.gene28072.t1 AT1G49300 34.969 163 90 6 3 157 52 206 3.14e-19 80.5
MS.gene28072.t1 AT1G49300 34.969 163 90 6 3 157 52 206 3.14e-19 80.5
MS.gene28072.t1 AT2G21880 33.918 171 90 6 1 157 51 212 4.64e-19 80.5
MS.gene28072.t1 AT4G09720 32.544 169 95 6 1 157 50 211 1.04e-17 76.6
MS.gene28072.t1 AT4G09720 31.429 175 95 6 1 157 50 217 4.24e-17 75.1
MS.gene28072.t1 AT2G44690 37.398 123 64 4 3 113 61 182 3.70e-16 72.8
MS.gene28072.t1 AT5G55080 32.500 120 78 3 8 127 62 178 1.02e-15 71.6
MS.gene28072.t1 AT5G20010 31.250 144 92 4 8 151 62 198 6.38e-15 69.7
MS.gene28072.t1 AT5G46025 36.782 87 54 1 35 120 20 106 7.64e-15 67.0
MS.gene28072.t1 AT5G20020 31.250 144 92 4 8 151 62 198 9.96e-15 68.9
MS.gene28072.t1 AT3G48040 37.398 123 64 4 3 113 51 172 1.80e-14 68.2
MS.gene28072.t1 AT5G55190 33.333 120 77 3 8 127 62 178 1.17e-13 66.2
MS.gene28072.t1 AT4G35020 34.146 123 68 4 3 113 49 170 1.55e-13 65.5
MS.gene28072.t1 AT4G35020 34.146 123 68 4 3 113 49 170 1.55e-13 65.5
MS.gene28072.t1 AT4G35020 34.146 123 68 4 3 113 49 170 1.55e-13 65.5
MS.gene28072.t1 AT5G62880 35.772 123 66 4 3 113 51 172 3.51e-13 64.7
MS.gene28072.t1 AT3G48040 37.719 114 58 4 3 104 51 163 8.20e-13 63.2
MS.gene28072.t1 AT1G20090 33.333 123 69 4 3 113 48 169 9.09e-13 63.5
MS.gene28072.t1 AT3G51300 34.454 119 65 4 7 113 53 170 1.11e-12 63.2
MS.gene28072.t1 AT1G75840 33.333 123 69 4 3 113 49 170 1.15e-12 63.2
MS.gene28072.t1 AT3G51290 34.454 119 65 4 7 113 654 771 2.40e-12 63.9
MS.gene28072.t1 AT4G35950 34.454 119 65 4 7 113 53 170 3.98e-12 61.6
MS.gene28072.t1 AT2G17800 34.454 119 65 4 7 113 53 170 5.21e-12 61.2
MS.gene28072.t1 AT2G17800 34.454 119 65 4 7 113 53 170 5.21e-12 61.2
MS.gene28072.t1 AT5G45970 30.894 123 72 4 3 113 49 170 1.42e-11 60.1
MS.gene28072.t1 AT5G62880 35.965 114 60 4 3 104 51 163 1.73e-11 59.7
MS.gene28072.t1 AT4G28950 32.231 121 71 4 3 113 49 168 2.33e-11 59.7

Find 36 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCTTTCTTCTACAAATA+AGG 0.224029 4.4:+10734246 MS.gene28072:CDS
TGAGACTTCTAAATCTTTCT+TGG 0.265565 4.4:-10732226 None:intergenic
GAACTGTTCGTTTGCAGCTT+TGG 0.333518 4.4:+10732033 MS.gene28072:CDS
TCCTCCCTGCTGCTCTGTAT+TGG 0.354070 4.4:-10734311 None:intergenic
CTTCCTTATTTGTAGAAGAA+AGG 0.383495 4.4:-10734249 None:intergenic
GAGGAGGTTGCTCATGTTAG+AGG 0.391358 4.4:+10734329 MS.gene28072:CDS
AAGATTGCTTCCGCCTTGCC+AGG 0.393556 4.4:+10734217 MS.gene28072:CDS
GATGCCAAGTCAAAAGAGTT+TGG 0.394493 4.4:+10732946 MS.gene28072:CDS
AACGAACAGTTCTATCTTCA+AGG 0.399142 4.4:-10732022 None:intergenic
GAAGAAAGGGTTTCCATCCC+TGG 0.417515 4.4:-10734235 None:intergenic
TTCCTTATTTGTAGAAGAAA+GGG 0.422408 4.4:-10734248 None:intergenic
GAAGAATCTCTTATGTAGCT+TGG 0.431932 4.4:-10732251 None:intergenic
TGCTTCCGCCTTGCCAGGGA+TGG 0.448090 4.4:+10734222 MS.gene28072:CDS
TTCATCCAATACAGAGCAGC+AGG 0.451660 4.4:+10734306 MS.gene28072:CDS
AAACTGATCTTGTCGAGAAA+AGG 0.473751 4.4:+10732579 MS.gene28072:CDS
AGGCAAGTTTCTATAGAAGA+AGG 0.486341 4.4:+10732922 MS.gene28072:intron
GATGTTATAATTGTCTTGGT+TGG 0.487954 4.4:+10732551 MS.gene28072:CDS
TAGTGATGTTATAATTGTCT+TGG 0.496039 4.4:+10732547 MS.gene28072:CDS
ATCGAAACCAGTGCAAAAGC+AGG 0.513342 4.4:+10732979 MS.gene28072:CDS
AATACAGAGCAGCAGGGAGG+AGG 0.528419 4.4:+10734313 MS.gene28072:CDS
GTATTGGATGAATGCACTGT+GGG 0.529684 4.4:-10734295 None:intergenic
TTAACTTTCAGGGATACTGC+AGG 0.536162 4.4:+10732203 MS.gene28072:intron
AAAAGCAGGCTTCAATATCA+AGG 0.552081 4.4:+10732993 MS.gene28072:CDS
CACTAACAAGTGGGTTGAGG+AGG 0.553351 4.4:+10732508 MS.gene28072:CDS
GAACACTAACAAGTGGGTTG+AGG 0.553502 4.4:+10732505 MS.gene28072:CDS
TTCTACAAATAAGGAAGACA+TGG 0.563578 4.4:+10734255 MS.gene28072:CDS
AGATTGCTTCCGCCTTGCCA+GGG 0.573903 4.4:+10734218 MS.gene28072:CDS
AAGGGTTTCCATCCCTGGCA+AGG 0.588850 4.4:-10734230 None:intergenic
CATTTCTGAACACTAACAAG+TGG 0.594464 4.4:+10732498 MS.gene28072:CDS
ATTTCTGAACACTAACAAGT+GGG 0.616106 4.4:+10732499 MS.gene28072:CDS
GAAGCAATCTTACGAAACAA+AGG 0.623923 4.4:-10734205 None:intergenic
GAGGAGGTGCGTCAAGAACG+TGG 0.657614 4.4:+10732524 MS.gene28072:CDS
TGTATTGGATGAATGCACTG+TGG 0.660739 4.4:-10734296 None:intergenic
TCCAATACAGAGCAGCAGGG+AGG 0.703010 4.4:+10734310 MS.gene28072:CDS
GGTTTCCATCCCTGGCAAGG+CGG 0.703532 4.4:-10734227 None:intergenic
TCATCCAATACAGAGCAGCA+GGG 0.714266 4.4:+10734307 MS.gene28072:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAAATTGGATT+TGG + chr4.4:10733939-10733958 MS.gene28072:intron 10.0%
!! AAATAAAAAAAATTGGATTT+GGG + chr4.4:10733940-10733959 MS.gene28072:intron 10.0%
!!! TAATAATAATAACTAGTTTA+AGG + chr4.4:10733811-10733830 MS.gene28072:intron 10.0%
!! GTTAATGAAATTAATTGAAT+TGG - chr4.4:10732832-10732851 None:intergenic 15.0%
!! TATCGTTATTTAACTAAAAA+AGG - chr4.4:10732418-10732437 None:intergenic 15.0%
!! TCAATTAATTTCATTAACAA+AGG + chr4.4:10732834-10732853 MS.gene28072:intron 15.0%
!!! GTTTTTGTTTAATATCATAT+TGG + chr4.4:10732671-10732690 MS.gene28072:intron 15.0%
!!! TCTAATTATTTTTTATATGG+CGG + chr4.4:10732889-10732908 MS.gene28072:intron 15.0%
!!! TGGTCTAATTATTTTTTATA+TGG + chr4.4:10732886-10732905 MS.gene28072:intron 15.0%
!! AAAAAAAATATCAATTGACG+AGG - chr4.4:10732070-10732089 None:intergenic 20.0%
!! AATTAATTGAATTGGCTATA+AGG - chr4.4:10732824-10732843 None:intergenic 20.0%
!! AGCTTATTTATATTGTAGTT+TGG - chr4.4:10733629-10733648 None:intergenic 20.0%
!! AGGTTAATAACTATAAATTG+AGG - chr4.4:10732448-10732467 None:intergenic 20.0%
!! ATCATTACTAAATTGTTCTA+AGG + chr4.4:10733255-10733274 MS.gene28072:intron 20.0%
!! ATGAATATATAGATCAAACT+CGG - chr4.4:10732619-10732638 None:intergenic 20.0%
!! CACTTATTTATATTGTAGTT+TGG - chr4.4:10733685-10733704 None:intergenic 20.0%
!! TATTCGATGTAAAACAAAAT+AGG - chr4.4:10734092-10734111 None:intergenic 20.0%
!! TCAGAAATAGTAAAAAGAAA+AGG - chr4.4:10732171-10732190 None:intergenic 20.0%
!! TTATTATTCAAACAAGTACT+AGG - chr4.4:10733785-10733804 None:intergenic 20.0%
!!! GAGTATTTTCTTTGTAATTA+TGG - chr4.4:10733200-10733219 None:intergenic 20.0%
!!! TAAGGTTTTTTAATACTCAA+TGG + chr4.4:10733829-10733848 MS.gene28072:intron 20.0%
!!! TTAGTGTATTTTAACTTTCA+GGG + chr4.4:10732193-10732212 MS.gene28072:intron 20.0%
!!! TTTTTTTGTTTGGTCAAAAT+TGG - chr4.4:10733922-10733941 None:intergenic 20.0%
! ACGATAAAAACTCAATACTT+CGG + chr4.4:10733442-10733461 MS.gene28072:intron 25.0%
! AGATGATGCATTATGATTTA+TGG + chr4.4:10732113-10732132 MS.gene28072:intron 25.0%
! TAGCAAAATTACAAAGAACA+TGG - chr4.4:10732772-10732791 None:intergenic 25.0%
! TAGTGATGTTATAATTGTCT+TGG + chr4.4:10732547-10732566 MS.gene28072:CDS 25.0%
! TCTATATATTCATTCACAAC+CGG + chr4.4:10732626-10732645 MS.gene28072:intron 25.0%
! TTAGATGTGAAAGTTAGTAA+AGG - chr4.4:10734060-10734079 None:intergenic 25.0%
! TTTCAAATATTGCGATGTTA+TGG + chr4.4:10732866-10732885 MS.gene28072:intron 25.0%
!! AAAAAAATTGGATTTGGGTT+TGG + chr4.4:10733945-10733964 MS.gene28072:intron 25.0%
!! AATGAATTTTCATAGTTGCT+TGG + chr4.4:10733024-10733043 MS.gene28072:intron 25.0%
!! ATGAATTTTCATAGTTGCTT+GGG + chr4.4:10733025-10733044 MS.gene28072:intron 25.0%
!! TTCCTTATTTGTAGAAGAAA+GGG - chr4.4:10734251-10734270 None:intergenic 25.0%
!! TTTTTAATACTCAATGGTAC+TGG + chr4.4:10733835-10733854 MS.gene28072:intron 25.0%
!!! ATATTTTTTGTGCTACTTGT+TGG - chr4.4:10733487-10733506 None:intergenic 25.0%
!!! CTTAGTGTATTTTAACTTTC+AGG + chr4.4:10732192-10732211 MS.gene28072:intron 25.0%
!!! CTTTGTAATTTTGCTATGAT+AGG + chr4.4:10732776-10732795 MS.gene28072:intron 25.0%
AACCCTTTCTTCTACAAATA+AGG + chr4.4:10734246-10734265 MS.gene28072:CDS 30.0%
ATAGATACTAAATCCCACAT+CGG + chr4.4:10733582-10733601 MS.gene28072:intron 30.0%
ATTTCTGAACACTAACAAGT+GGG + chr4.4:10732499-10732518 MS.gene28072:CDS 30.0%
GATGTTATAATTGTCTTGGT+TGG + chr4.4:10732551-10732570 MS.gene28072:CDS 30.0%
TACATTAGAACAGCTTACTT+AGG - chr4.4:10732468-10732487 None:intergenic 30.0%
TGAAACAAAAAACACCTACA+CGG - chr4.4:10732148-10732167 None:intergenic 30.0%
TGAGACTTCTAAATCTTTCT+TGG - chr4.4:10732229-10732248 None:intergenic 30.0%
TTCTACAAATAAGGAAGACA+TGG + chr4.4:10734255-10734274 MS.gene28072:CDS 30.0%
! AGCTTTGTCAAGCTATTATT+AGG - chr4.4:10733421-10733440 None:intergenic 30.0%
! CTTCCTTATTTGTAGAAGAA+AGG - chr4.4:10734252-10734271 None:intergenic 30.0%
!! GTTGTTATTTCTTTGCTTCA+TGG - chr4.4:10733719-10733738 None:intergenic 30.0%
AAAAGCAGGCTTCAATATCA+AGG + chr4.4:10732993-10733012 MS.gene28072:CDS 35.0%
AAACTGATCTTGTCGAGAAA+AGG + chr4.4:10732579-10732598 MS.gene28072:CDS 35.0%
AACGAACAGTTCTATCTTCA+AGG - chr4.4:10732025-10732044 None:intergenic 35.0%
AGGCAAGTTTCTATAGAAGA+AGG + chr4.4:10732922-10732941 MS.gene28072:intron 35.0%
CATTTCTGAACACTAACAAG+TGG + chr4.4:10732498-10732517 MS.gene28072:CDS 35.0%
GAAGAATCTCTTATGTAGCT+TGG - chr4.4:10732254-10732273 None:intergenic 35.0%
GAAGCAATCTTACGAAACAA+AGG - chr4.4:10734208-10734227 None:intergenic 35.0%
GTAACAAGATGTGTGATCAA+TGG - chr4.4:10733319-10733338 None:intergenic 35.0%
GTTTATCTTCTTTCCCATGT+TGG + chr4.4:10734141-10734160 MS.gene28072:intron 35.0%
TAAGCTGTTCTAATGTAGAC+AGG + chr4.4:10732471-10732490 MS.gene28072:intron 35.0%
TATAGATCACATGCATCCAT+GGG - chr4.4:10734007-10734026 None:intergenic 35.0%
TGTAAGCTTGCAATGTAGTT+TGG - chr4.4:10733659-10733678 None:intergenic 35.0%
TTATAGATCACATGCATCCA+TGG - chr4.4:10734008-10734027 None:intergenic 35.0%
! TGCATTGACAGATAACAATG+AGG - chr4.4:10734176-10734195 None:intergenic 35.0%
!! GATTCCAAACTCTTTTGACT+TGG - chr4.4:10732953-10732972 None:intergenic 35.0%
CTCTCTTTCTGCTACATTGA+AGG + chr4.4:10733738-10733757 MS.gene28072:intron 40.0%
GATGCCAAGTCAAAAGAGTT+TGG + chr4.4:10732946-10732965 MS.gene28072:CDS 40.0%
GTATTGGATGAATGCACTGT+GGG - chr4.4:10734298-10734317 None:intergenic 40.0%
TGTATTGGATGAATGCACTG+TGG - chr4.4:10734299-10734318 None:intergenic 40.0%
TTAACTTTCAGGGATACTGC+AGG + chr4.4:10732203-10732222 MS.gene28072:intron 40.0%
!! AATTGGATTTGGGTTTGGTG+TGG + chr4.4:10733950-10733969 MS.gene28072:intron 40.0%
!! TATATGGCGGCTTTGTTTAC+AGG + chr4.4:10732902-10732921 MS.gene28072:intron 40.0%
!! TTGTGCTACTTGTTGGAAAG+TGG - chr4.4:10733480-10733499 None:intergenic 40.0%
AAACACCTACACGGCTACAA+CGG - chr4.4:10732139-10732158 None:intergenic 45.0%
ACCATACCCAGTCAGAAAAC+CGG - chr4.4:10732648-10732667 None:intergenic 45.0%
ATAGGTCAAGTGTCTTGCAG+TGG + chr4.4:10732794-10732813 MS.gene28072:intron 45.0%
ATCGAAACCAGTGCAAAAGC+AGG + chr4.4:10732979-10732998 MS.gene28072:CDS 45.0%
ATCTGGACTTACAACGTTGG+TGG + chr4.4:10733099-10733118 MS.gene28072:intron 45.0%
CAGGCTTCAATATCAAGGTC+AGG + chr4.4:10732998-10733017 MS.gene28072:intron 45.0%
CCTCAACTATGATGCATGCA+GGG + chr4.4:10733072-10733091 MS.gene28072:intron 45.0%
CTCAACTATGATGCATGCAG+GGG + chr4.4:10733073-10733092 MS.gene28072:intron 45.0%
GAACTGTTCGTTTGCAGCTT+TGG + chr4.4:10732033-10732052 MS.gene28072:CDS 45.0%
GAGGACACAAGAACCAACAT+GGG - chr4.4:10734157-10734176 None:intergenic 45.0%
TAGGAATAGCCCACAACTTG+CGG - chr4.4:10733766-10733785 None:intergenic 45.0%
TCATCCAATACAGAGCAGCA+GGG + chr4.4:10734307-10734326 MS.gene28072:CDS 45.0%
TCCTCAACTATGATGCATGC+AGG + chr4.4:10733071-10733090 MS.gene28072:intron 45.0%
TCTGGACTTACAACGTTGGT+GGG + chr4.4:10733100-10733119 MS.gene28072:intron 45.0%
TGAGGACACAAGAACCAACA+TGG - chr4.4:10734158-10734177 None:intergenic 45.0%
TTCATCCAATACAGAGCAGC+AGG + chr4.4:10734306-10734325 MS.gene28072:CDS 45.0%
!! ATTGAAGCCTGCTTTTGCAC+TGG - chr4.4:10732989-10733008 None:intergenic 45.0%
!! GAACACTAACAAGTGGGTTG+AGG + chr4.4:10732505-10732524 MS.gene28072:CDS 45.0%
!! TCACAACCGGTTTTCTGACT+GGG + chr4.4:10732639-10732658 MS.gene28072:intron 45.0%
!! TTCACAACCGGTTTTCTGAC+TGG + chr4.4:10732638-10732657 MS.gene28072:intron 45.0%
!! ACAAAAAAAATAAAAAAAAT+TGG + chr4.4:10733933-10733952 MS.gene28072:intron 5.0%
!!! TTTTTTTTATTTTTTTTGTT+TGG - chr4.4:10733932-10733951 None:intergenic 5.0%
AACTATGATGCATGCAGGGG+CGG + chr4.4:10733076-10733095 MS.gene28072:intron 50.0%
AGATCACATGCATCCATGGG+CGG - chr4.4:10734004-10734023 None:intergenic 50.0%
AGCTTGCAATGTAGCCGATG+TGG - chr4.4:10733599-10733618 None:intergenic 50.0%
CCCTGCATGCATCATAGTTG+AGG - chr4.4:10733075-10733094 None:intergenic 50.0%
CGGATCTGGACTTACAACGT+TGG + chr4.4:10733096-10733115 MS.gene28072:intron 50.0%
CTGGACTTACAACGTTGGTG+GGG + chr4.4:10733101-10733120 MS.gene28072:intron 50.0%
GAAGAAAGGGTTTCCATCCC+TGG - chr4.4:10734238-10734257 None:intergenic 50.0%
GCTTGCAATGTAGCCGATGT+GGG - chr4.4:10733598-10733617 None:intergenic 50.0%
!! ACCGGTTTTCTGACTGGGTA+TGG + chr4.4:10732644-10732663 MS.gene28072:intron 50.0%
!! ATTGAAGGCACCGCAAGTTG+TGG + chr4.4:10733753-10733772 MS.gene28072:intron 50.0%
!! CACTAACAAGTGGGTTGAGG+AGG + chr4.4:10732508-10732527 MS.gene28072:CDS 50.0%
!! TTGAAGGCACCGCAAGTTGT+GGG + chr4.4:10733754-10733773 MS.gene28072:intron 50.0%
AAGATTGCTTCCGCCTTGCC+AGG + chr4.4:10734217-10734236 MS.gene28072:CDS 55.0%
AAGGGTTTCCATCCCTGGCA+AGG - chr4.4:10734233-10734252 None:intergenic 55.0%
AATACAGAGCAGCAGGGAGG+AGG + chr4.4:10734313-10734332 MS.gene28072:CDS 55.0%
AGATTGCTTCCGCCTTGCCA+GGG + chr4.4:10734218-10734237 MS.gene28072:CDS 55.0%
ATCCATGGGCGGACCTGAAT+AGG - chr4.4:10733993-10734012 None:intergenic 55.0%
GACCTGAATAGGTCCTGGTG+TGG - chr4.4:10733982-10734001 None:intergenic 55.0%
TATGGCCGTTGTAGCCGTGT+AGG + chr4.4:10732131-10732150 MS.gene28072:intron 55.0%
TCCAATACAGAGCAGCAGGG+AGG + chr4.4:10734310-10734329 MS.gene28072:CDS 55.0%
TCCTCCCTGCTGCTCTGTAT+TGG - chr4.4:10734314-10734333 None:intergenic 55.0%
TGCCACACCAGGACCTATTC+AGG + chr4.4:10733977-10733996 MS.gene28072:intron 55.0%
GACCTATTCAGGTCCGCCCA+TGG + chr4.4:10733988-10734007 MS.gene28072:intron 60.0%
GGTTTCCATCCCTGGCAAGG+CGG - chr4.4:10734230-10734249 None:intergenic 60.0%
! GAGGAGGTGCGTCAAGAACG+TGG + chr4.4:10732524-10732543 MS.gene28072:CDS 60.0%
GATGCATGCAGGGGCGGATC+TGG + chr4.4:10733082-10733101 MS.gene28072:intron 65.0%
GGGCGGACCTGAATAGGTCC+TGG - chr4.4:10733987-10734006 None:intergenic 65.0%
GGTGTGGCACTTGCCACACC+AGG + chr4.4:10733966-10733985 MS.gene28072:intron 65.0%
TGCTTCCGCCTTGCCAGGGA+TGG + chr4.4:10734222-10734241 MS.gene28072:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 10732017 10734348 10732017 ID=MS.gene28072
chr4.4 mRNA 10732017 10734348 10732017 ID=MS.gene28072.t1;Parent=MS.gene28072
chr4.4 exon 10732017 10732054 10732017 ID=MS.gene28072.t1.exon1;Parent=MS.gene28072.t1
chr4.4 CDS 10732017 10732054 10732017 ID=cds.MS.gene28072.t1;Parent=MS.gene28072.t1
chr4.4 exon 10732214 10732302 10732214 ID=MS.gene28072.t1.exon2;Parent=MS.gene28072.t1
chr4.4 CDS 10732214 10732302 10732214 ID=cds.MS.gene28072.t1;Parent=MS.gene28072.t1
chr4.4 exon 10732489 10732600 10732489 ID=MS.gene28072.t1.exon3;Parent=MS.gene28072.t1
chr4.4 CDS 10732489 10732600 10732489 ID=cds.MS.gene28072.t1;Parent=MS.gene28072.t1
chr4.4 exon 10732924 10733014 10732924 ID=MS.gene28072.t1.exon4;Parent=MS.gene28072.t1
chr4.4 CDS 10732924 10733014 10732924 ID=cds.MS.gene28072.t1;Parent=MS.gene28072.t1
chr4.4 exon 10734205 10734348 10734205 ID=MS.gene28072.t1.exon5;Parent=MS.gene28072.t1
chr4.4 CDS 10734205 10734348 10734205 ID=cds.MS.gene28072.t1;Parent=MS.gene28072.t1
Gene Sequence

>MS.gene28072

ATGTACCTTGAAGATAGAACTGTTCGTTTGCAGCTTTGGTATGATAAATTCCTCGTCAATTGATATTTTTTTTGTTTCTTTATCAGAAGTTGTTTAAGATGATGCATTATGATTTATGGCCGTTGTAGCCGTGTAGGTGTTTTTTGTTTCACCTTTTCTTTTTACTATTTCTGATCTTAGTGTATTTTAACTTTCAGGGATACTGCAGGCCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGAGATTCTTCTGTTGCAGTTATTGTATATGATGTAGCTAGTAAGTTTATGTTTTTTTAATATCAATTTCATTATCTAATTAATTTTATGTTAATTTTCATCTGATATGTGTTTGCATTTGAATCTGAAAGTTCTTTAGTCAGTTTAATGTTCCTTTTTTAGTTAAATAACGATATATTTAACCTCAATTTATAGTTATTAACCTAAGTAAGCTGTTCTAATGTAGACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGTGCGTCAAGAACGTGGTAGTGATGTTATAATTGTCTTGGTTGGAAACAAAACTGATCTTGTCGAGAAAAGGTGAGTACTGAGTTACCGAGTTTGATCTATATATTCATTCACAACCGGTTTTCTGACTGGGTATGGTTTAGTTTTTGTTTAATATCATATTGGAGTTTTCATATTATGTTTCAATATGCATCTTGTTTAGTTGCTCAAATTTTTTGCATAAAAATAGTTAATAATTTACCATGTTCTTTGTAATTTTGCTATGATAGGTCAAGTGTCTTGCAGTGGCATACCTTATAGCCAATTCAATTAATTTCATTAACAAAGGTCTTTCAAGTTTCAAATATTGCGATGTTATGGTCTAATTATTTTTTATATGGCGGCTTTGTTTACAGGCAAGTTTCTATAGAAGAAGGAGATGCCAAGTCAAAAGAGTTTGGAATCATGTTTATCGAAACCAGTGCAAAAGCAGGCTTCAATATCAAGGTCAGGATTAATGAATTTTCATAGTTGCTTGGGTATTTATTTTCACTAGAGCATGCTCCTCAACTATGATGCATGCAGGGGCGGATCTGGACTTACAACGTTGGTGGGGCACAAATTTTTTTGTCAAAAAATTAAATAATACTAAATTTAATAAGAAGTTATATGATAAGTAGTTGTAGCAACCATAATTACAAAGAAAATACTCTATTTTTCATTTGTTTGAAAATGAGATAAAATTACATCATTACTAAATTGTTCTAAGGACATCTCTTTCTATATATGCTACAAGACGATCATTTAACCATTGATCACACATCTTGTTACTTAGTTGACTCTTCGCATATTTTTCATTCTGATACAATTTCAATTTAAAATGATATAATATCAATTTTAGTAGTCAAAACCTAATAATAGCTTGACAAAGCTAACGATAAAAACTCAATACTTCGGTCTTTTGTAAAACCACTTTCCAACAAGTAGCACAAAAAATATAGCTTGATAATCACAAAAAAACATATATTACTTATTATTATTTTTATATGCATGTGCTTTGTAAAACATAGATAGATAGATACTAAATCCCACATCGGCTACATTGCAAGCTTACAAAGCCAAACTACAATATAAATAAGCTTACAAAGCCAAACTACATTGCAAGCTTACAAAGCCAAACTACAATATAAATAAGTGCACAACATGAGCCATGAAGCAAAGAAATAACAACTCTCTTTCTGCTACATTGAAGGCACCGCAAGTTGTGGGCTATTCCTAGTACTTGTTTGAATAATAATAATAATAATAATAATAACTAGTTTAAGGTTTTTTAATACTCAATGGTACTGGTACGTGAGTTGTGAGTTCTCTGTTTTCTATGTATTGTGCAAGAATTCAAGAATCAAGAGTACCAATTTTGACCAAACAAAAAAAATAAAAAAAATTGGATTTGGGTTTGGTGTGGCACTTGCCACACCAGGACCTATTCAGGTCCGCCCATGGATGCATGTGATCTATAATATCAATATGCAAAATTCTGATATGATTACCTTTACTAACTTTCACATCTAACATAATACACCTATTTTGTTTTACATCGAATATCAATATACATGTGAGCTTAGTTTTTCAAGTTTATCTTCTTTCCCATGTTGGTTCTTGTGTCCTCATTGTTATCTGTCAATGCAAAATCGCAGCCTTTGTTTCGTAAGATTGCTTCCGCCTTGCCAGGGATGGAAACCCTTTCTTCTACAAATAAGGAAGACATGGTTGACGTAAATTTAAAACCCACAGTGCATTCATCCAATACAGAGCAGCAGGGAGGAGGTTGCTCATGTTAG

Protein sequence

>MS.gene28072.t1

MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRQERGSDVIIVLVGNKTDLVEKRQVSIEEGDAKSKEFGIMFIETSAKAGFNIKPLFRKIASALPGMETLSSTNKEDMVDVNLKPTVHSSNTEQQGGGCSC