Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055333.t1 | RHN80241.1 | 95.2 | 289 | 14 | 0 | 2 | 290 | 24 | 312 | 6.70E-94 | 354 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055333.t1 | G7I2Q3 | 95.2 | 289 | 14 | 0 | 2 | 290 | 21 | 309 | 4.8e-94 | 354.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050333 | MS.gene055333 | -0.819668 | 1.03E-52 | -1.69E-46 |
| MS.gene050416 | MS.gene055333 | 0.803738 | 3.02E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene055333 | -0.801401 | 9.16E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene055634 | -0.830656 | 2.60E-55 | -1.69E-46 |
| MS.gene055333 | MS.gene055638 | -0.809701 | 1.66E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene058773 | -0.807163 | 5.78E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene059022 | -0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene063091 | -0.80112 | 1.05E-48 | -1.69E-46 |
| MS.gene055333 | MS.gene064665 | -0.820201 | 7.77E-53 | -1.69E-46 |
| MS.gene055333 | MS.gene067785 | 0.812606 | 3.90E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene07075 | 0.800452 | 1.43E-48 | -1.69E-46 |
| MS.gene055333 | MS.gene071901 | -0.802721 | 4.90E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene07212 | 0.81408 | 1.85E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene073565 | -0.813175 | 2.92E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene07361 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene055333 | MS.gene074194 | -0.813026 | 3.15E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene074566 | -0.802469 | 5.53E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene074568 | -0.806623 | 7.52E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene20350 | 0.806276 | 8.90E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene20919 | -0.804763 | 1.85E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene21128 | -0.821859 | 3.23E-53 | -1.69E-46 |
| MS.gene055333 | MS.gene24025 | -0.802284 | 6.03E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene24408 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene24674 | -0.814013 | 1.91E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene24726 | -0.806812 | 6.86E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene24767 | -0.811717 | 6.09E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene25675 | -0.80391 | 2.78E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene25677 | -0.804369 | 2.23E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene26698 | -0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene28072 | 0.857276 | 1.82E-62 | -1.69E-46 |
| MS.gene055333 | MS.gene29117 | 0.802021 | 6.84E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene32251 | -0.817113 | 3.90E-52 | -1.69E-46 |
| MS.gene055333 | MS.gene33913 | 0.801609 | 8.31E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene40252 | -0.820126 | 8.09E-53 | -1.69E-46 |
| MS.gene055333 | MS.gene40702 | -0.84621 | 2.51E-59 | -1.69E-46 |
| MS.gene055333 | MS.gene41080 | -0.802831 | 4.66E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene41234 | -0.846383 | 2.25E-59 | -1.69E-46 |
| MS.gene055333 | MS.gene41704 | 0.807973 | 3.89E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene42342 | -0.824267 | 8.86E-54 | -1.69E-46 |
| MS.gene055333 | MS.gene47475 | -0.828088 | 1.09E-54 | -1.69E-46 |
| MS.gene055333 | MS.gene51894 | 0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene51927 | -0.812109 | 5.00E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene51935 | 0.816881 | 4.40E-52 | -1.69E-46 |
| MS.gene055333 | MS.gene52062 | 0.801244 | 9.87E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene52287 | -0.811626 | 6.37E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene52289 | -0.808652 | 2.79E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene58183 | 0.80345 | 3.47E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene63951 | -0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene65990 | -0.800307 | 1.53E-48 | -1.69E-46 |
| MS.gene055333 | MS.gene66360 | 0.83692 | 7.05E-57 | -1.69E-46 |
| MS.gene055333 | MS.gene67131 | 0.813317 | 2.72E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene68138 | -0.807212 | 5.64E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene68738 | -0.814624 | 1.40E-51 | -1.69E-46 |
| MS.gene055333 | MS.gene70069 | -0.800647 | 1.31E-48 | -1.69E-46 |
| MS.gene055333 | MS.gene70692 | -0.809556 | 1.78E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene70809 | -0.806455 | 8.16E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene72019 | -0.845443 | 4.05E-59 | -1.69E-46 |
| MS.gene055333 | MS.gene72216 | -0.801945 | 7.08E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene74217 | -0.80151 | 8.70E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene75048 | 0.822253 | 2.62E-53 | -1.69E-46 |
| MS.gene055333 | MS.gene77615 | -0.819238 | 1.29E-52 | -1.69E-46 |
| MS.gene055333 | MS.gene81559 | -0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene82401 | -0.805355 | 1.39E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene82403 | -0.802124 | 6.51E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene84043 | -0.816815 | 4.55E-52 | -1.69E-46 |
| MS.gene055333 | MS.gene84413 | -0.835423 | 1.69E-56 | -1.69E-46 |
| MS.gene055333 | MS.gene86083 | -0.801664 | 8.09E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene88849 | 0.804394 | 2.21E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene88929 | -0.807391 | 5.17E-50 | -1.69E-46 |
| MS.gene055333 | MS.gene91775 | 0.836735 | 7.86E-57 | -1.69E-46 |
| MS.gene055333 | MS.gene92153 | -0.824054 | 9.94E-54 | -1.69E-46 |
| MS.gene055333 | MS.gene92774 | 0.830925 | 2.23E-55 | -1.69E-46 |
| MS.gene055333 | MS.gene93362 | -0.803744 | 3.01E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene96524 | -0.80544 | 1.33E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene97158 | 0.802171 | 6.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055333.t1 | MTR_1g073260 | 93.772 | 289 | 18 | 0 | 2 | 290 | 5 | 293 | 0.0 | 540 |
| MS.gene055333.t1 | MTR_1g073260 | 93.772 | 289 | 18 | 0 | 2 | 290 | 21 | 309 | 0.0 | 540 |
| MS.gene055333.t1 | MTR_1g073260 | 93.455 | 275 | 18 | 0 | 2 | 276 | 5 | 279 | 0.0 | 508 |
| MS.gene055333.t1 | MTR_1g073260 | 93.137 | 204 | 14 | 0 | 2 | 205 | 5 | 208 | 1.40e-131 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCAAGAGCATGTCTATT+TGG | 0.260332 | 1.3:+52797261 | None:intergenic |
| TACCTGTTATTGAAGACTTT+GGG | 0.278202 | 1.3:-52798545 | MS.gene055333:CDS |
| TTTGGTACTTTGACAATAGA+TGG | 0.307291 | 1.3:+52798726 | None:intergenic |
| TTCTGCAGAACCGGAGGAAT+TGG | 0.348481 | 1.3:+52798506 | None:intergenic |
| TACCTGTCACTGAAGACTTT+GGG | 0.350219 | 1.3:-52798419 | MS.gene055333:CDS |
| TGATCATGTAGGAAAGAAAA+AGG | 0.353754 | 1.3:-52797157 | MS.gene055333:CDS |
| AGACTTTGGGGACGGCGGTT+TGG | 0.358797 | 1.3:-52798406 | MS.gene055333:CDS |
| ACAGCACGAGGGCGTGGAAT+TGG | 0.374576 | 1.3:+52798285 | None:intergenic |
| ATGGCACAGAGACAACTTTA+TGG | 0.375380 | 1.3:+52798745 | None:intergenic |
| TCTTGCGTCCGGAGGAATAT+CGG | 0.385319 | 1.3:+52797212 | None:intergenic |
| CTTCTCTGGTTCTGCAGAAC+CGG | 0.386674 | 1.3:+52798497 | None:intergenic |
| ACAGAAAATGACTTAATGAT+TGG | 0.389455 | 1.3:-52797342 | MS.gene055333:intron |
| TCCCCAAAGTCTTCAATAAC+AGG | 0.399542 | 1.3:+52798543 | None:intergenic |
| GTACCTGTTATTGAAGACTT+TGG | 0.416459 | 1.3:-52798546 | MS.gene055333:CDS |
| AGCAGAAACAAGACTGGAAA+TGG | 0.419403 | 1.3:-52797318 | MS.gene055333:CDS |
| TTCCACTCTCCTACTTCTCC+TGG | 0.421371 | 1.3:-52799597 | MS.gene055333:intron |
| GCATCCGATTTGTCAGGACC+TGG | 0.425980 | 1.3:-52798384 | MS.gene055333:CDS |
| TCTATATTGCCGTCCTTCTC+AGG | 0.427850 | 1.3:+52798339 | None:intergenic |
| TCAGTGTCTCCATCCTTCTC+TGG | 0.446136 | 1.3:+52798609 | None:intergenic |
| TCAGTATCTCCATCCTTCTC+TGG | 0.448833 | 1.3:+52798483 | None:intergenic |
| ATCAACTTTATCTTTAGACT+TGG | 0.466112 | 1.3:+52797176 | None:intergenic |
| AGTTTGACATCTGATTCCTC+TGG | 0.470171 | 1.3:-52798642 | MS.gene055333:CDS |
| GTACCTGTCACTGAAGACTT+TGG | 0.473223 | 1.3:-52798420 | MS.gene055333:CDS |
| CAGAAAATGACTTAATGATT+GGG | 0.477294 | 1.3:-52797341 | MS.gene055333:CDS |
| CTGATAATTTACATAGGCAC+TGG | 0.480813 | 1.3:-52797113 | MS.gene055333:CDS |
| TCCCCAAAGTCTTCAGTGAC+AGG | 0.504033 | 1.3:+52798417 | None:intergenic |
| ATCTTTAGACTTGGGCTCTG+TGG | 0.509252 | 1.3:+52797185 | None:intergenic |
| CATCCGATTTGTCAGGACCT+GGG | 0.510606 | 1.3:-52798383 | MS.gene055333:CDS |
| GGTTTGGCATCCGATTTGTC+AGG | 0.511838 | 1.3:-52798390 | MS.gene055333:CDS |
| GATATGACAGCACGAGGGCG+TGG | 0.515028 | 1.3:+52798279 | None:intergenic |
| GGTTTGACATCCAATTCCTC+CGG | 0.524831 | 1.3:-52798516 | MS.gene055333:CDS |
| AGGTACTCGTGGAATCAAAT+CGG | 0.525694 | 1.3:+52798563 | None:intergenic |
| TCAACTTTATCTTTAGACTT+GGG | 0.525773 | 1.3:+52797177 | None:intergenic |
| GAGTAATTACCAGGAGAAGT+AGG | 0.529062 | 1.3:+52799588 | None:intergenic |
| ATCCGATTTGTCAGGACCTG+GGG | 0.530457 | 1.3:-52798382 | MS.gene055333:CDS |
| ACTGCAGTCGACAAAATCTT+CGG | 0.536162 | 1.3:+52798662 | None:intergenic |
| CGTGCTGTCATATCTAGTCC+TGG | 0.542686 | 1.3:-52798270 | MS.gene055333:intron |
| TGGTTCTGCAGAACCAGAGA+AGG | 0.544655 | 1.3:-52798622 | MS.gene055333:CDS |
| AAAGATAAAGTTGATCATGT+AGG | 0.545329 | 1.3:-52797168 | MS.gene055333:CDS |
| ACTTGTGGCAAGTAACACTT+TGG | 0.547468 | 1.3:+52798708 | None:intergenic |
| GGTGGTGATGTAAGAGACCT+TGG | 0.548065 | 1.3:-52799645 | MS.gene055333:CDS |
| CGGTTCTGCAGAACCAGAGA+AGG | 0.550317 | 1.3:-52798496 | MS.gene055333:CDS |
| CTCTGGTTCTGCAGAACCAG+AGG | 0.560999 | 1.3:+52798626 | None:intergenic |
| ACATGAGAAAGATGAATACA+AGG | 0.564963 | 1.3:-52799667 | MS.gene055333:CDS |
| ACCTGTTATTGAAGACTTTG+GGG | 0.566193 | 1.3:-52798544 | MS.gene055333:CDS |
| CTCTGGTTCTGCAGAACCGG+AGG | 0.570758 | 1.3:+52798500 | None:intergenic |
| ATTGGGAGCAGAAACAAGAC+TGG | 0.572746 | 1.3:-52797324 | MS.gene055333:CDS |
| GTTATTGAAGACTTTGGGGA+AGG | 0.576122 | 1.3:-52798540 | MS.gene055333:CDS |
| ACCTGTCACTGAAGACTTTG+GGG | 0.594909 | 1.3:-52798418 | MS.gene055333:CDS |
| TAAAATCTGATAATTTACAT+AGG | 0.595012 | 1.3:-52797119 | MS.gene055333:CDS |
| GAAGGATCATGGACCTGAGA+AGG | 0.596092 | 1.3:-52798352 | MS.gene055333:CDS |
| TACCAGGAGAAGTAGGAGAG+TGG | 0.597652 | 1.3:+52799595 | None:intergenic |
| TCTTCAATAACAGGTACTCG+TGG | 0.602537 | 1.3:+52798552 | None:intergenic |
| TGACACTACCGATATTCCTC+CGG | 0.603823 | 1.3:-52797220 | MS.gene055333:CDS |
| AGAGAAAAGCTTTCAAACCA+AGG | 0.604343 | 1.3:+52799628 | None:intergenic |
| ATTGAAGACTTTGGGGAAGG+CGG | 0.604745 | 1.3:-52798537 | MS.gene055333:CDS |
| TCTGCAGAACCAGAGAAGGA+TGG | 0.614650 | 1.3:-52798492 | MS.gene055333:CDS |
| TCTGCAGAACCAGAGAAGGA+TGG | 0.614650 | 1.3:-52798618 | MS.gene055333:CDS |
| TCTTCGGTTACAGATACTCG+TGG | 0.630012 | 1.3:+52798678 | None:intergenic |
| ACTGAAGACTTTGGGGACGG+CGG | 0.636584 | 1.3:-52798411 | MS.gene055333:CDS |
| TCTTCAGTGACAGGTACTCG+TGG | 0.639277 | 1.3:+52798426 | None:intergenic |
| GATCATGGACCTGAGAAGGA+CGG | 0.642589 | 1.3:-52798348 | MS.gene055333:CDS |
| ACTCGTGGAATTGATACTTG+TGG | 0.645193 | 1.3:+52798693 | None:intergenic |
| GTCACTGAAGACTTTGGGGA+CGG | 0.652392 | 1.3:-52798414 | MS.gene055333:CDS |
| CATGAGAAAGATGAATACAA+GGG | 0.653599 | 1.3:-52799666 | MS.gene055333:CDS |
| TCCGATTTGTCAGGACCTGG+GGG | 0.661422 | 1.3:-52798381 | MS.gene055333:CDS |
| GGACTAGATATGACAGCACG+AGG | 0.661674 | 1.3:+52798273 | None:intergenic |
| GAGAAAGATGAATACAAGGG+TGG | 0.696625 | 1.3:-52799663 | MS.gene055333:CDS |
| GACTAGATATGACAGCACGA+GGG | 0.734110 | 1.3:+52798274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTATTAAAAAAAAAA+GGG | + | chr1.3:52797652-52797671 | None:intergenic | 0.0% |
| !! | GATGAAAATAAAAATAAAAA+AGG | + | chr1.3:52798392-52798411 | None:intergenic | 10.0% |
| !! | TTAAGTAATATTATATTGTT+AGG | - | chr1.3:52799442-52799461 | MS.gene055333:intron | 10.0% |
| !! | AATTATTTGAACCAAAAATT+AGG | - | chr1.3:52798333-52798352 | MS.gene055333:CDS | 15.0% |
| !! | TAAAATCTGATAATTTACAT+AGG | - | chr1.3:52800088-52800107 | MS.gene055333:intron | 15.0% |
| !! | TTATAGAAATAAGTTACTTA+TGG | - | chr1.3:52797882-52797901 | MS.gene055333:intron | 15.0% |
| !!! | AAATAATAAAATGATGATGA+TGG | + | chr1.3:52797307-52797326 | None:intergenic | 15.0% |
| !!! | GTACTGAAAATAATATTTTA+GGG | - | chr1.3:52799377-52799396 | MS.gene055333:intron | 15.0% |
| !! | AAAAATTTGAGCTTCAAATA+AGG | + | chr1.3:52798188-52798207 | None:intergenic | 20.0% |
| !! | AATATTTGTGTATGTTCTAA+AGG | + | chr1.3:52799178-52799197 | None:intergenic | 20.0% |
| !!! | GGTACTGAAAATAATATTTT+AGG | - | chr1.3:52799376-52799395 | MS.gene055333:intron | 20.0% |
| !!! | TATCATAGATAACAATGTTT+TGG | - | chr1.3:52799101-52799120 | MS.gene055333:intron | 20.0% |
| !!! | TCAATTTTTTTGTTTTGACT+TGG | - | chr1.3:52797671-52797690 | MS.gene055333:intron | 20.0% |
| ! | AAATCATGTTTCATCAAAAG+TGG | + | chr1.3:52797463-52797482 | None:intergenic | 25.0% |
| ! | AAGGTAAACAAAACTCATAA+TGG | - | chr1.3:52799292-52799311 | MS.gene055333:intron | 25.0% |
| ! | AATGAAGTGCATTATAATTC+AGG | + | chr1.3:52799518-52799537 | None:intergenic | 25.0% |
| ! | ACAGAAAATGACTTAATGAT+TGG | - | chr1.3:52799865-52799884 | MS.gene055333:intron | 25.0% |
| ! | ATAAAGCATAACTGTTCTTA+TGG | + | chr1.3:52799082-52799101 | None:intergenic | 25.0% |
| ! | ATCAACTTTATCTTTAGACT+TGG | + | chr1.3:52800034-52800053 | None:intergenic | 25.0% |
| ! | ATGCATTAAGTGATAATACA+GGG | - | chr1.3:52799557-52799576 | MS.gene055333:intron | 25.0% |
| ! | CAGAAAATGACTTAATGATT+GGG | - | chr1.3:52799866-52799885 | MS.gene055333:intron | 25.0% |
| ! | TATGCATTAAGTGATAATAC+AGG | - | chr1.3:52799556-52799575 | MS.gene055333:intron | 25.0% |
| ! | TCAACTTTATCTTTAGACTT+GGG | + | chr1.3:52800033-52800052 | None:intergenic | 25.0% |
| ! | TTTGTTTCAAAGACATGATA+AGG | - | chr1.3:52797694-52797713 | MS.gene055333:intron | 25.0% |
| !! | AAAGATAAAGTTGATCATGT+AGG | - | chr1.3:52800039-52800058 | MS.gene055333:intron | 25.0% |
| !! | AGGTTTATTATGTAGCTTTT+CGG | - | chr1.3:52799818-52799837 | MS.gene055333:intron | 25.0% |
| !! | ATTGTCTAATTTTGCAGTAA+AGG | - | chr1.3:52798438-52798457 | MS.gene055333:CDS | 25.0% |
| !! | TTAATTTTCAGTGTATCCAA+AGG | - | chr1.3:52797501-52797520 | MS.gene055333:intron | 25.0% |
| !!! | CATGATTTGATTGTTTTGTT+TGG | - | chr1.3:52797475-52797494 | MS.gene055333:intron | 25.0% |
| !!! | TCAACTAAGCTATTTTAAAC+AGG | - | chr1.3:52797973-52797992 | MS.gene055333:intron | 25.0% |
| AAGGCATGAACATAACATAA+TGG | - | chr1.3:52797217-52797236 | MS.gene055333:CDS | 30.0% | |
| ACATGAGAAAGATGAATACA+AGG | - | chr1.3:52797540-52797559 | MS.gene055333:intron | 30.0% | |
| ACTAGAATCAGCATAATTGA+TGG | + | chr1.3:52799764-52799783 | None:intergenic | 30.0% | |
| AGAATTCAATTCGTTGTTTG+TGG | - | chr1.3:52799684-52799703 | MS.gene055333:CDS | 30.0% | |
| AGTGACTCTATATCAGTAAA+TGG | + | chr1.3:52798418-52798437 | None:intergenic | 30.0% | |
| ATAGCTAAACAGAAAACTGA+TGG | + | chr1.3:52798976-52798995 | None:intergenic | 30.0% | |
| ATCTCTATAGCAAATAAGCA+AGG | - | chr1.3:52799589-52799608 | MS.gene055333:intron | 30.0% | |
| ATGAAGTCGATAATATGCAT+AGG | - | chr1.3:52798212-52798231 | MS.gene055333:intron | 30.0% | |
| ATGTTAGTTACTTGAAAAGC+AGG | - | chr1.3:52798308-52798327 | MS.gene055333:CDS | 30.0% | |
| ATTAAAACGAAGTAAACGTG+GGG | - | chr1.3:52797134-52797153 | MS.gene055333:CDS | 30.0% | |
| ATTGACATTGAATCTTGAGA+GGG | - | chr1.3:52798144-52798163 | MS.gene055333:intron | 30.0% | |
| ATTGTCTGAGCTATAACTAA+AGG | - | chr1.3:52799038-52799057 | MS.gene055333:intron | 30.0% | |
| CATGAGAAAGATGAATACAA+GGG | - | chr1.3:52797541-52797560 | MS.gene055333:intron | 30.0% | |
| CTGAGAAAGAAGGAAAAAAA+GGG | + | chr1.3:52797362-52797381 | None:intergenic | 30.0% | |
| CTGTTATTCATAAGCTATCA+TGG | - | chr1.3:52797854-52797873 | MS.gene055333:intron | 30.0% | |
| GATTAAAACGAAGTAAACGT+GGG | - | chr1.3:52797133-52797152 | MS.gene055333:CDS | 30.0% | |
| GGAAAATTAGAGTAATTACC+AGG | + | chr1.3:52797631-52797650 | None:intergenic | 30.0% | |
| TACCTGTTATTGAAGACTTT+GGG | - | chr1.3:52798662-52798681 | MS.gene055333:CDS | 30.0% | |
| TATCACTTAATGCATACCAT+AGG | + | chr1.3:52799552-52799571 | None:intergenic | 30.0% | |
| TCTGAGAAAGAAGGAAAAAA+AGG | + | chr1.3:52797363-52797382 | None:intergenic | 30.0% | |
| TCTTGTCTTAATTTCACCTT+TGG | + | chr1.3:52797520-52797539 | None:intergenic | 30.0% | |
| TGATCATGTAGGAAAGAAAA+AGG | - | chr1.3:52800050-52800069 | MS.gene055333:intron | 30.0% | |
| TGATTAAAACGAAGTAAACG+TGG | - | chr1.3:52797132-52797151 | MS.gene055333:CDS | 30.0% | |
| TTACCAACATCTATATCTCT+TGG | + | chr1.3:52799151-52799170 | None:intergenic | 30.0% | |
| TTTGGTACTTTGACAATAGA+TGG | + | chr1.3:52798484-52798503 | None:intergenic | 30.0% | |
| ! | AAAGTACTTCAAATTTGCTC+TGG | + | chr1.3:52799271-52799290 | None:intergenic | 30.0% |
| ! | ATATTATTTTCAGTACCCCA+AGG | + | chr1.3:52799373-52799392 | None:intergenic | 30.0% |
| ! | ATGACTGGTTCATGATATTA+CGG | + | chr1.3:52798360-52798379 | None:intergenic | 30.0% |
| ! | GATATTACGGTCCTAATTTT+TGG | + | chr1.3:52798347-52798366 | None:intergenic | 30.0% |
| ! | GCAAATTTGAAGTACTTTGA+AGG | - | chr1.3:52799273-52799292 | MS.gene055333:intron | 30.0% |
| ! | TCTACTTTCTGTGTTATTCA+AGG | - | chr1.3:52799798-52799817 | MS.gene055333:intron | 30.0% |
| !! | ATAGGCTTTCTACTTTTATG+TGG | - | chr1.3:52798230-52798249 | MS.gene055333:intron | 30.0% |
| !! | TAATTTTCACTTCTAGCTGA+TGG | - | chr1.3:52799656-52799675 | MS.gene055333:CDS | 30.0% |
| !!! | TCAATCGTTTTTTACACTGA+CGG | + | chr1.3:52797736-52797755 | None:intergenic | 30.0% |
| AAAAGGAAATTCTGCATGAC+TGG | + | chr1.3:52798375-52798394 | None:intergenic | 35.0% | |
| AAGCCAAGAGATATAGATGT+TGG | - | chr1.3:52799145-52799164 | MS.gene055333:intron | 35.0% | |
| ACCTGTTATTGAAGACTTTG+GGG | - | chr1.3:52798663-52798682 | MS.gene055333:CDS | 35.0% | |
| AGAGAAAAGCTTTCAAACCA+AGG | + | chr1.3:52797582-52797601 | None:intergenic | 35.0% | |
| AGTGACATGAAAAGAAACCT+TGG | - | chr1.3:52799353-52799372 | MS.gene055333:intron | 35.0% | |
| CTATATCTCTTGGCTTCAAT+GGG | + | chr1.3:52799141-52799160 | None:intergenic | 35.0% | |
| CTGATAATTTACATAGGCAC+TGG | - | chr1.3:52800094-52800113 | MS.gene055333:intron | 35.0% | |
| GATTGACATTGAATCTTGAG+AGG | - | chr1.3:52798143-52798162 | MS.gene055333:intron | 35.0% | |
| GGAAAGAAAAAGGTTCACAA+AGG | - | chr1.3:52800060-52800079 | MS.gene055333:intron | 35.0% | |
| GTACCTGTTATTGAAGACTT+TGG | - | chr1.3:52798661-52798680 | MS.gene055333:CDS | 35.0% | |
| GTGACATGAAAAGAAACCTT+GGG | - | chr1.3:52799354-52799373 | MS.gene055333:intron | 35.0% | |
| GTGTTGTCTAAACTCAAGTT+GGG | - | chr1.3:52797181-52797200 | MS.gene055333:CDS | 35.0% | |
| TAAACGTGGGGAAGTAAAAA+AGG | - | chr1.3:52797146-52797165 | MS.gene055333:CDS | 35.0% | |
| TCTAGATCACTACAGCTTTA+TGG | + | chr1.3:52797999-52798018 | None:intergenic | 35.0% | |
| TCTATATCTCTTGGCTTCAA+TGG | + | chr1.3:52799142-52799161 | None:intergenic | 35.0% | |
| TGACATGAAAAGAAACCTTG+GGG | - | chr1.3:52799355-52799374 | MS.gene055333:intron | 35.0% | |
| TGTCGATAAACTCGTATGAA+TGG | - | chr1.3:52797920-52797939 | MS.gene055333:intron | 35.0% | |
| TGTGTTGTCTAAACTCAAGT+TGG | - | chr1.3:52797180-52797199 | MS.gene055333:CDS | 35.0% | |
| ! | AAACTTGAATTTTGAGCCTG+TGG | - | chr1.3:52799401-52799420 | MS.gene055333:intron | 35.0% |
| ! | ACTAAAGGTTGACTTAGAGA+TGG | - | chr1.3:52799053-52799072 | MS.gene055333:intron | 35.0% |
| ! | ACTCAGCTTGTTCTTCAATT+TGG | - | chr1.3:52798279-52798298 | MS.gene055333:CDS | 35.0% |
| ! | TATTGTTAGGAGACTGCTTT+TGG | - | chr1.3:52799455-52799474 | MS.gene055333:intron | 35.0% |
| !! | CATAATGGAAGCACTTCATA+TGG | - | chr1.3:52799307-52799326 | MS.gene055333:intron | 35.0% |
| AACTGTCAAGTATGTGTGTG+GGG | + | chr1.3:52798063-52798082 | None:intergenic | 40.0% | |
| ACATTGAATCTTGAGAGGGT+GGG | - | chr1.3:52798148-52798167 | MS.gene055333:intron | 40.0% | |
| ACTCGTGGAATTGATACTTG+TGG | + | chr1.3:52798517-52798536 | None:intergenic | 40.0% | |
| ACTGCAGTCGACAAAATCTT+CGG | + | chr1.3:52798548-52798567 | None:intergenic | 40.0% | |
| ACTTGTGGCAAGTAACACTT+TGG | + | chr1.3:52798502-52798521 | None:intergenic | 40.0% | |
| AGAACTGTCAAGTATGTGTG+TGG | + | chr1.3:52798065-52798084 | None:intergenic | 40.0% | |
| AGAGTTGCATTGCATCATTC+TGG | + | chr1.3:52799224-52799243 | None:intergenic | 40.0% | |
| AGCAGAAACAAGACTGGAAA+TGG | - | chr1.3:52799889-52799908 | MS.gene055333:intron | 40.0% | |
| AGGTACTCGTGGAATCAAAT+CGG | + | chr1.3:52798647-52798666 | None:intergenic | 40.0% | |
| AGTTTGACATCTGATTCCTC+TGG | - | chr1.3:52798565-52798584 | MS.gene055333:CDS | 40.0% | |
| ATGGCACAGAGACAACTTTA+TGG | + | chr1.3:52798465-52798484 | None:intergenic | 40.0% | |
| CAGAAAGTAGATGCAAAGTG+AGG | + | chr1.3:52799789-52799808 | None:intergenic | 40.0% | |
| CATAACATAATGGCGTGTGA+AGG | - | chr1.3:52797227-52797246 | MS.gene055333:CDS | 40.0% | |
| GAACTGTCAAGTATGTGTGT+GGG | + | chr1.3:52798064-52798083 | None:intergenic | 40.0% | |
| GAGAAAGATGAATACAAGGG+TGG | - | chr1.3:52797544-52797563 | MS.gene055333:intron | 40.0% | |
| GAGTAATTACCAGGAGAAGT+AGG | + | chr1.3:52797622-52797641 | None:intergenic | 40.0% | |
| GATGGAGTATGAGATTTACC+AGG | + | chr1.3:52798958-52798977 | None:intergenic | 40.0% | |
| GTTTGTGGTTGTGAAGAGAA+TGG | - | chr1.3:52799699-52799718 | MS.gene055333:intron | 40.0% | |
| TACCTGTCACTGAAGACTTT+GGG | - | chr1.3:52798788-52798807 | MS.gene055333:intron | 40.0% | |
| TCCCCAAAGTCTTCAATAAC+AGG | + | chr1.3:52798667-52798686 | None:intergenic | 40.0% | |
| TCTTCAATAACAGGTACTCG+TGG | + | chr1.3:52798658-52798677 | None:intergenic | 40.0% | |
| TTAATGCATACCATAGGCTC+TGG | + | chr1.3:52799546-52799565 | None:intergenic | 40.0% | |
| ! | CTTCTGACTTCTGAGAAAGA+AGG | + | chr1.3:52797372-52797391 | None:intergenic | 40.0% |
| ! | GTAGTGATCTAGAGTGCTTT+GGG | - | chr1.3:52798006-52798025 | MS.gene055333:intron | 40.0% |
| ! | GTTATTGAAGACTTTGGGGA+AGG | - | chr1.3:52798667-52798686 | MS.gene055333:CDS | 40.0% |
| ! | TAGTGATCTAGAGTGCTTTG+GGG | - | chr1.3:52798007-52798026 | MS.gene055333:intron | 40.0% |
| ! | TGAGCAAGAGCATGTCTATT+TGG | + | chr1.3:52799949-52799968 | None:intergenic | 40.0% |
| ! | TGTAGTGATCTAGAGTGCTT+TGG | - | chr1.3:52798005-52798024 | MS.gene055333:intron | 40.0% |
| !! | GATGATGATGGTGTTGTGTT+GGG | + | chr1.3:52797295-52797314 | None:intergenic | 40.0% |
| !! | TGATGATGATGGTGTTGTGT+TGG | + | chr1.3:52797296-52797315 | None:intergenic | 40.0% |
| !! | TTGTCTAAACTCAAGTTGGG+TGG | - | chr1.3:52797184-52797203 | MS.gene055333:CDS | 40.0% |
| ACCTGTCACTGAAGACTTTG+GGG | - | chr1.3:52798789-52798808 | MS.gene055333:intron | 45.0% | |
| ACTGTCAAGTATGTGTGTGG+GGG | + | chr1.3:52798062-52798081 | None:intergenic | 45.0% | |
| AGAGAGAACGACGATGATGT+AGG | + | chr1.3:52798111-52798130 | None:intergenic | 45.0% | |
| ATCTTTAGACTTGGGCTCTG+TGG | + | chr1.3:52800025-52800044 | None:intergenic | 45.0% | |
| ATTGGGAGCAGAAACAAGAC+TGG | - | chr1.3:52799883-52799902 | MS.gene055333:intron | 45.0% | |
| GACATTGAATCTTGAGAGGG+TGG | - | chr1.3:52798147-52798166 | MS.gene055333:intron | 45.0% | |
| GACTAGATATGACAGCACGA+GGG | + | chr1.3:52798936-52798955 | None:intergenic | 45.0% | |
| GATGTAAATGCCACAACCAC+AGG | + | chr1.3:52799420-52799439 | None:intergenic | 45.0% | |
| GGTTTGACATCCAATTCCTC+CGG | - | chr1.3:52798691-52798710 | MS.gene055333:CDS | 45.0% | |
| GTACCTGTCACTGAAGACTT+TGG | - | chr1.3:52798787-52798806 | MS.gene055333:intron | 45.0% | |
| TCAGTATCTCCATCCTTCTC+TGG | + | chr1.3:52798727-52798746 | None:intergenic | 45.0% | |
| TCTATATTGCCGTCCTTCTC+AGG | + | chr1.3:52798871-52798890 | None:intergenic | 45.0% | |
| TCTTCGGTTACAGATACTCG+TGG | + | chr1.3:52798532-52798551 | None:intergenic | 45.0% | |
| TGACACTACCGATATTCCTC+CGG | - | chr1.3:52799987-52800006 | MS.gene055333:intron | 45.0% | |
| ! | AGTGATCTAGAGTGCTTTGG+GGG | - | chr1.3:52798008-52798027 | MS.gene055333:intron | 45.0% |
| ! | ATTGAAGACTTTGGGGAAGG+CGG | - | chr1.3:52798670-52798689 | MS.gene055333:CDS | 45.0% |
| ! | GAATTTTGAGCCTGTGGTTG+TGG | - | chr1.3:52799407-52799426 | MS.gene055333:intron | 45.0% |
| ! | TCATTTTGCTCCAGAGCCTA+TGG | - | chr1.3:52799533-52799552 | MS.gene055333:intron | 45.0% |
| ! | TCTGTGGATTTTCTTGCGTC+CGG | + | chr1.3:52800009-52800028 | None:intergenic | 45.0% |
| !!! | GAATTTTTATTAAAAAAAAA+AGG | + | chr1.3:52797653-52797672 | None:intergenic | 5.0% |
| CAAGTATGTGTGTGGGGGAT+GGG | + | chr1.3:52798057-52798076 | None:intergenic | 50.0% | |
| CGTGCTGTCATATCTAGTCC+TGG | - | chr1.3:52798937-52798956 | MS.gene055333:intron | 50.0% | |
| GAAGGATCATGGACCTGAGA+AGG | - | chr1.3:52798855-52798874 | MS.gene055333:intron | 50.0% | |
| GATCATGGACCTGAGAAGGA+CGG | - | chr1.3:52798859-52798878 | MS.gene055333:intron | 50.0% | |
| GGACTAGATATGACAGCACG+AGG | + | chr1.3:52798937-52798956 | None:intergenic | 50.0% | |
| TACCAGGAGAAGTAGGAGAG+TGG | + | chr1.3:52797615-52797634 | None:intergenic | 50.0% | |
| TCAAGTATGTGTGTGGGGGA+TGG | + | chr1.3:52798058-52798077 | None:intergenic | 50.0% | |
| TCAGTGTCTCCATCCTTCTC+TGG | + | chr1.3:52798601-52798620 | None:intergenic | 50.0% | |
| TCCCCAAAGTCTTCAGTGAC+AGG | + | chr1.3:52798793-52798812 | None:intergenic | 50.0% | |
| TCTGCAGAACCAGAGAAGGA+TGG | - | chr1.3:52798589-52798608 | MS.gene055333:CDS | 50.0% | |
| TCTTCAGTGACAGGTACTCG+TGG | + | chr1.3:52798784-52798803 | None:intergenic | 50.0% | |
| TCTTGCGTCCGGAGGAATAT+CGG | + | chr1.3:52799998-52800017 | None:intergenic | 50.0% | |
| TTCCACTCTCCTACTTCTCC+TGG | - | chr1.3:52797610-52797629 | MS.gene055333:intron | 50.0% | |
| TTCTGCAGAACCGGAGGAAT+TGG | + | chr1.3:52798704-52798723 | None:intergenic | 50.0% | |
| TTGAATCTTGAGAGGGTGGG+TGG | - | chr1.3:52798151-52798170 | MS.gene055333:intron | 50.0% | |
| ! | ATCCGATTTGTCAGGACCTG+GGG | - | chr1.3:52798825-52798844 | MS.gene055333:intron | 50.0% |
| ! | CATCCGATTTGTCAGGACCT+GGG | - | chr1.3:52798824-52798843 | MS.gene055333:intron | 50.0% |
| ! | GGTGGTGATGTAAGAGACCT+TGG | - | chr1.3:52797562-52797581 | MS.gene055333:intron | 50.0% |
| ! | GGTTTGGCATCCGATTTGTC+AGG | - | chr1.3:52798817-52798836 | MS.gene055333:intron | 50.0% |
| ! | GTCACTGAAGACTTTGGGGA+CGG | - | chr1.3:52798793-52798812 | MS.gene055333:intron | 50.0% |
| ! | TGGTTCTGCAGAACCAGAGA+AGG | - | chr1.3:52798585-52798604 | MS.gene055333:CDS | 50.0% |
| !! | AAACTCAAGTTGGGTGGCGT+TGG | - | chr1.3:52797190-52797209 | MS.gene055333:CDS | 50.0% |
| !! | CTAGAGTGCTTTGGGGGTAT+TGG | - | chr1.3:52798014-52798033 | MS.gene055333:intron | 50.0% |
| !! | CTTCTCTGGTTCTGCAGAAC+CGG | + | chr1.3:52798587-52798606 | None:intergenic | 50.0% |
| !!! | GGGGTATTGGTGGAACCTTT+TGG | - | chr1.3:52798027-52798046 | MS.gene055333:intron | 50.0% |
| AGAGGGTGGGTGGTAACTGT+TGG | - | chr1.3:52798161-52798180 | MS.gene055333:intron | 55.0% | |
| CGGTTCTGCAGAACCAGAGA+AGG | - | chr1.3:52798711-52798730 | MS.gene055333:CDS | 55.0% | |
| GGGGGACTAGAGAAGGATCA+TGG | - | chr1.3:52798844-52798863 | MS.gene055333:intron | 55.0% | |
| TCCCCCAGGTCCTGACAAAT+CGG | + | chr1.3:52798830-52798849 | None:intergenic | 55.0% | |
| TGATCCTTCTCTAGTCCCCC+AGG | + | chr1.3:52798844-52798863 | None:intergenic | 55.0% | |
| TGGGGGATGGGAGAACCAAA+AGG | + | chr1.3:52798045-52798064 | None:intergenic | 55.0% | |
| ! | ACTGAAGACTTTGGGGACGG+CGG | - | chr1.3:52798796-52798815 | MS.gene055333:intron | 55.0% |
| ! | ATAATGGCGTGTGAAGGCGC+AGG | - | chr1.3:52797233-52797252 | MS.gene055333:CDS | 55.0% |
| ! | GCATCCGATTTGTCAGGACC+TGG | - | chr1.3:52798823-52798842 | MS.gene055333:intron | 55.0% |
| ! | GTGGATTTTCTTGCGTCCGG+AGG | + | chr1.3:52800006-52800025 | None:intergenic | 55.0% |
| ! | TCCGATTTGTCAGGACCTGG+GGG | - | chr1.3:52798826-52798845 | MS.gene055333:intron | 55.0% |
| !! | CTCTGGTTCTGCAGAACCAG+AGG | + | chr1.3:52798601-52798582 | None:intergenic | 55.0% |
| !! | GAGTGCTTTGGGGGTATTGG+TGG | - | chr1.3:52798017-52798036 | MS.gene055333:intron | 55.0% |
| !! | GTTGGGTGGCGTTGGTCAAA+AGG | - | chr1.3:52797198-52797217 | MS.gene055333:CDS | 55.0% |
| AGGACCTGGGGGACTAGAGA+AGG | - | chr1.3:52798837-52798856 | MS.gene055333:intron | 60.0% | |
| GATATGACAGCACGAGGGCG+TGG | + | chr1.3:52798931-52798950 | None:intergenic | 60.0% | |
| ! | ACAGCACGAGGGCGTGGAAT+TGG | + | chr1.3:52798925-52798944 | None:intergenic | 60.0% |
| ! | AGACTTTGGGGACGGCGGTT+TGG | - | chr1.3:52798801-52798820 | MS.gene055333:intron | 60.0% |
| !! | CTCTGGTTCTGCAGAACCGG+AGG | + | chr1.3:52798710-52798729 | None:intergenic | 60.0% |
| ! | GGCGTGTGAAGGCGCAGGAA+AGG | - | chr1.3:52797238-52797257 | MS.gene055333:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52797104 | 52800125 | 52797104 | ID=MS.gene055333 |
| chr1.3 | mRNA | 52797104 | 52800125 | 52797104 | ID=MS.gene055333.t1;Parent=MS.gene055333 |
| chr1.3 | exon | 52800123 | 52800125 | 52800123 | ID=MS.gene055333.t1.exon1;Parent=MS.gene055333.t1 |
| chr1.3 | CDS | 52800123 | 52800125 | 52800123 | ID=cds.MS.gene055333.t1;Parent=MS.gene055333.t1 |
| chr1.3 | exon | 52799598 | 52799706 | 52799598 | ID=MS.gene055333.t1.exon2;Parent=MS.gene055333.t1 |
| chr1.3 | CDS | 52799598 | 52799706 | 52799598 | ID=cds.MS.gene055333.t1;Parent=MS.gene055333.t1 |
| chr1.3 | exon | 52798271 | 52798774 | 52798271 | ID=MS.gene055333.t1.exon3;Parent=MS.gene055333.t1 |
| chr1.3 | CDS | 52798271 | 52798774 | 52798271 | ID=cds.MS.gene055333.t1;Parent=MS.gene055333.t1 |
| chr1.3 | exon | 52797104 | 52797360 | 52797104 | ID=MS.gene055333.t1.exon4;Parent=MS.gene055333.t1 |
| chr1.3 | CDS | 52797104 | 52797360 | 52797104 | ID=cds.MS.gene055333.t1;Parent=MS.gene055333.t1 |
| Gene Sequence |
| Protein sequence |
