Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28209.t1 | AES99755.2 | 66.2 | 71 | 7 | 1 | 1 | 71 | 1 | 54 | 1.70E-12 | 82.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28209.t1 | G7K7C5 | 66.2 | 71 | 7 | 1 | 1 | 71 | 1 | 54 | 1.3e-12 | 82.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene28209 | 0.815042 | 1.13E-51 | -1.69E-46 |
| MS.gene049977 | MS.gene28209 | 0.826503 | 2.62E-54 | -1.69E-46 |
| MS.gene051316 | MS.gene28209 | -0.800987 | 1.11E-48 | -1.69E-46 |
| MS.gene051613 | MS.gene28209 | 0.809761 | 1.61E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene28209 | 0.803878 | 2.83E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene28209 | 0.808603 | 2.86E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene28209 | 0.819451 | 1.15E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene28209 | 0.808966 | 2.39E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28209.t1 | MTR_5g084370 | 60.000 | 55 | 5 | 1 | 17 | 71 | 17 | 54 | 6.30e-13 | 63.2 |
| MS.gene28209.t1 | MTR_7g050405 | 95.000 | 40 | 2 | 0 | 73 | 112 | 112 | 151 | 7.02e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATCCACTCGAAGAAAA+AGG | 0.267544 | 3.3:-17332854 | None:intergenic |
| CAAAACCTTTGTTCCACTTC+CGG | 0.302523 | 3.3:-17330595 | None:intergenic |
| AAACAGGATACTGCATCTTT+TGG | 0.320733 | 3.3:+17330754 | MS.gene28209:intron |
| CATAGAACTGTTGGAATTAA+CGG | 0.364166 | 3.3:-17330661 | None:intergenic |
| AGCTTATGTTGTTATTCAGC+TGG | 0.387479 | 3.3:+17332778 | MS.gene28209:CDS |
| TGCTGTTGCGGTGCTGGTGG+TGG | 0.388686 | 3.3:+17332685 | MS.gene28209:CDS |
| CACAAACCGCACCACAGGAC+AGG | 0.390028 | 3.3:-17332708 | None:intergenic |
| CTGTCCTGTGGTGCGGTTTG+TGG | 0.404468 | 3.3:+17332709 | MS.gene28209:CDS |
| GGTGGTGACGGTGCCGGAAG+TGG | 0.432585 | 3.3:+17330582 | MS.gene28209:CDS |
| GACTGAACAATGGCAGGATT+CGG | 0.435178 | 3.3:+17330549 | None:intergenic |
| CTGCAGCAGTGGCAGTTAGC+AGG | 0.464105 | 3.3:+17332732 | MS.gene28209:CDS |
| GGGTTTGACAAGGTCGGTGG+TGG | 0.475442 | 3.3:+17330624 | MS.gene28209:CDS |
| CATGACCTTCATAGAACTGT+TGG | 0.484367 | 3.3:-17330670 | None:intergenic |
| CCATTCATAATCAATGTTGA+CGG | 0.488564 | 3.3:-17330824 | None:intergenic |
| AAGGGACAATAAAACCCGTC+TGG | 0.489785 | 3.3:-17332835 | None:intergenic |
| CGGTGCACATCGGCCATGAC+AGG | 0.497947 | 3.3:+17330799 | MS.gene28209:CDS |
| TAATTCCAACAGTTCTATGA+AGG | 0.500068 | 3.3:+17330665 | MS.gene28209:CDS |
| CCGTCAACATTGATTATGAA+TGG | 0.508279 | 3.3:+17330824 | MS.gene28209:CDS |
| GCAGCCACAAACCGCACCAC+AGG | 0.522063 | 3.3:-17332713 | None:intergenic |
| AATGTTGACGGTTCCTGTCA+TGG | 0.526743 | 3.3:-17330812 | None:intergenic |
| TACAGAGGTGGTGACGGTGC+CGG | 0.530891 | 3.3:+17330576 | MS.gene28209:CDS |
| GCGGTTTGTGGCTGCAGCAG+TGG | 0.550530 | 3.3:+17332721 | MS.gene28209:CDS |
| GGTTAAGACTGAACAATGGC+AGG | 0.551228 | 3.3:+17330543 | None:intergenic |
| GCTGGTGGTGGCCTGTCCTG+TGG | 0.559356 | 3.3:+17332697 | MS.gene28209:CDS |
| AATGGTGGGTTTGACAAGGT+CGG | 0.560867 | 3.3:+17330618 | MS.gene28209:CDS |
| GAAGTACATCTATTCCAGAC+GGG | 0.562427 | 3.3:+17332821 | MS.gene28209:CDS |
| GGGGTCGCCGCGGTGCACAT+CGG | 0.563740 | 3.3:+17330789 | MS.gene28209:CDS |
| GCAGTGGCAGTTAGCAGGTG+CGG | 0.571360 | 3.3:+17332737 | MS.gene28209:CDS |
| TGACAAGGTCGGTGGTGGAG+TGG | 0.576900 | 3.3:+17330629 | MS.gene28209:CDS |
| TTTGAATGGTGGGTTTGACA+AGG | 0.593014 | 3.3:+17330614 | MS.gene28209:CDS |
| GGTGGGTTTGACAAGGTCGG+TGG | 0.594855 | 3.3:+17330621 | MS.gene28209:CDS |
| TGAAGTACATCTATTCCAGA+CGG | 0.598535 | 3.3:+17332820 | MS.gene28209:CDS |
| TGGTGGCCTGTCCTGTGGTG+CGG | 0.603802 | 3.3:+17332702 | MS.gene28209:CDS |
| GGTGGTTACAGAGGTGGTGA+CGG | 0.620169 | 3.3:+17330570 | MS.gene28209:CDS |
| TGAACAATGGCAGGATTCGG+TGG | 0.629242 | 3.3:+17330552 | None:intergenic |
| CGGTGCCGGAAGTGGAACAA+AGG | 0.631452 | 3.3:+17330590 | MS.gene28209:CDS |
| GCAGGATTCGGTGGTTACAG+AGG | 0.637049 | 3.3:+17330561 | MS.gene28209:CDS |
| GGATTCGGTGGTTACAGAGG+TGG | 0.643969 | 3.3:+17330564 | MS.gene28209:CDS |
| GATTAGAGGAGGGGTCGCCG+CGG | 0.702663 | 3.3:+17330779 | MS.gene28209:CDS |
| GTCATGGCCGATGTGCACCG+CGG | 0.749893 | 3.3:-17330796 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGATTCTATAAATTAA+AGG | + | chr3.3:17331648-17331667 | MS.gene28209:intron | 10.0% |
| !! | TATTTATTTGTTTCATTCAT+TGG | - | chr3.3:17331736-17331755 | None:intergenic | 15.0% |
| !!! | AAATTTTTAACAAGTTAGAT+GGG | + | chr3.3:17332179-17332198 | MS.gene28209:intron | 15.0% |
| !!! | ATTTTTGTAGAAATTTCTAA+TGG | + | chr3.3:17332408-17332427 | MS.gene28209:intron | 15.0% |
| !!! | TAAATTTTTAACAAGTTAGA+TGG | + | chr3.3:17332178-17332197 | MS.gene28209:intron | 15.0% |
| !!! | TTTGTGAATTTATTTTAAAC+AGG | + | chr3.3:17330738-17330757 | MS.gene28209:intron | 15.0% |
| !! | AATAAATTCACAAAGAGAAA+TGG | - | chr3.3:17330732-17330751 | None:intergenic | 20.0% |
| !! | ATAAAACTATATTTCAGCTT+AGG | + | chr3.3:17331462-17331481 | MS.gene28209:intron | 20.0% |
| !! | ATAAATTCACAAAGAGAAAT+GGG | - | chr3.3:17330731-17330750 | None:intergenic | 20.0% |
| !! | ATAAGCAAAAAAGTTTATCT+TGG | - | chr3.3:17332469-17332488 | None:intergenic | 20.0% |
| !!! | AAACATCATTTTATTTTCCT+AGG | + | chr3.3:17331539-17331558 | MS.gene28209:intron | 20.0% |
| !!! | AAATAAGATTAGTTCAATGT+TGG | + | chr3.3:17331169-17331188 | MS.gene28209:intron | 20.0% |
| !!! | ATTGTTTTTTTCATTCTATC+CGG | + | chr3.3:17332330-17332349 | MS.gene28209:intron | 20.0% |
| ! | ATAACCTATGAAAAACCATA+AGG | - | chr3.3:17332260-17332279 | None:intergenic | 25.0% |
| ! | CAATTAAAGAAGGAAATTTG+AGG | - | chr3.3:17331884-17331903 | None:intergenic | 25.0% |
| ! | TGATTGAACTAATGTTTGAA+TGG | + | chr3.3:17331485-17331504 | MS.gene28209:intron | 25.0% |
| !! | TCAAAATAACCTCTTTTATG+AGG | + | chr3.3:17331707-17331726 | MS.gene28209:intron | 25.0% |
| !!! | AACTTGAAAGTTGATAATGT+TGG | + | chr3.3:17331683-17331702 | MS.gene28209:intron | 25.0% |
| !!! | CAACTTTCAAGTTAATTTCA+AGG | - | chr3.3:17331676-17331695 | None:intergenic | 25.0% |
| !!! | GCTGAAATATAGTTTTATCA+AGG | - | chr3.3:17331460-17331479 | None:intergenic | 25.0% |
| AAAGTCAAACACATAGGTAA+AGG | - | chr3.3:17331307-17331326 | None:intergenic | 30.0% | |
| AAATCACATAAATAAGGGTC+TGG | + | chr3.3:17330990-17331009 | MS.gene28209:intron | 30.0% | |
| AACGATCATGCAATTAAAGA+AGG | - | chr3.3:17331894-17331913 | None:intergenic | 30.0% | |
| AAGAATAATAGATAGGCAGA+TGG | - | chr3.3:17331225-17331244 | None:intergenic | 30.0% | |
| AATGCTACATATTATGCAAG+AGG | + | chr3.3:17331039-17331058 | MS.gene28209:intron | 30.0% | |
| AGAAGATAACTCCAAATAAG+AGG | - | chr3.3:17330859-17330878 | None:intergenic | 30.0% | |
| ATATGTAGCATTTGCAATTG+AGG | - | chr3.3:17331031-17331050 | None:intergenic | 30.0% | |
| ATGCAATAAACTGACAACAA+TGG | - | chr3.3:17330964-17330983 | None:intergenic | 30.0% | |
| ATTGCAAAAGTCAAACACAT+AGG | - | chr3.3:17331313-17331332 | None:intergenic | 30.0% | |
| CATAGAACTGTTGGAATTAA+CGG | - | chr3.3:17330664-17330683 | None:intergenic | 30.0% | |
| CCATTCATAATCAATGTTGA+CGG | - | chr3.3:17330827-17330846 | None:intergenic | 30.0% | |
| CCTATCTATTATTCTTGAAG+AGG | + | chr3.3:17331229-17331248 | MS.gene28209:intron | 30.0% | |
| CCTCTTCAAGAATAATAGAT+AGG | - | chr3.3:17331232-17331251 | None:intergenic | 30.0% | |
| CTCCCAAATCACATAAATAA+GGG | + | chr3.3:17330985-17331004 | MS.gene28209:intron | 30.0% | |
| TAATTCCAACAGTTCTATGA+AGG | + | chr3.3:17330665-17330684 | MS.gene28209:CDS | 30.0% | |
| TTGAATGGAGATTAATAGCA+TGG | + | chr3.3:17331500-17331519 | MS.gene28209:intron | 30.0% | |
| ! | AGACCCTTATTTATGTGATT+TGG | - | chr3.3:17330991-17331010 | None:intergenic | 30.0% |
| ! | GAATCCTTATGGTTTTTCAT+AGG | + | chr3.3:17332253-17332272 | MS.gene28209:intron | 30.0% |
| ! | GACCCTTATTTATGTGATTT+GGG | - | chr3.3:17330990-17331009 | None:intergenic | 30.0% |
| !! | TATGTGTTTGACTTTTGCAA+TGG | + | chr3.3:17331312-17331331 | MS.gene28209:intron | 30.0% |
| !!! | TTTTTTGCGTTGAATCCTTA+TGG | + | chr3.3:17332242-17332261 | MS.gene28209:intron | 30.0% |
| AATAATAGATAGGCAGATGG+AGG | - | chr3.3:17331222-17331241 | None:intergenic | 35.0% | |
| ACTATAAGTGATGTCTCAAG+AGG | - | chr3.3:17332101-17332120 | None:intergenic | 35.0% | |
| AGGTCATGATGTGATTAAAC+AGG | + | chr3.3:17330685-17330704 | MS.gene28209:intron | 35.0% | |
| ATCAGAAAAAGTGACTCCAA+GGG | - | chr3.3:17331811-17331830 | None:intergenic | 35.0% | |
| CAATTATTTCGTCGATCTCA+AGG | + | chr3.3:17331925-17331944 | MS.gene28209:intron | 35.0% | |
| CACGCATTAAAAATGTGCTT+TGG | - | chr3.3:17332537-17332556 | None:intergenic | 35.0% | |
| CATTCAATTTGTGCAGTATG+AGG | + | chr3.3:17331070-17331089 | MS.gene28209:intron | 35.0% | |
| CTATCAAACCATTGCAAGAA+GGG | - | chr3.3:17331606-17331625 | None:intergenic | 35.0% | |
| CTTGAGATCGACGAAATAAT+TGG | - | chr3.3:17331927-17331946 | None:intergenic | 35.0% | |
| GATAACTCCAAATAAGAGGA+AGG | - | chr3.3:17330855-17330874 | None:intergenic | 35.0% | |
| GCTCCCAAATCACATAAATA+AGG | + | chr3.3:17330984-17331003 | MS.gene28209:intron | 35.0% | |
| GGATTCAACGCAAAAAAAGA+AGG | - | chr3.3:17332239-17332258 | None:intergenic | 35.0% | |
| TATCAAACCATTGCAAGAAG+GGG | - | chr3.3:17331605-17331624 | None:intergenic | 35.0% | |
| TGAAGTACATCTATTCCAGA+CGG | + | chr3.3:17332820-17332839 | MS.gene28209:CDS | 35.0% | |
| TGAGACATCACTTATAGTGT+TGG | + | chr3.3:17332103-17332122 | MS.gene28209:intron | 35.0% | |
| ! | AAACAGGATACTGCATCTTT+TGG | + | chr3.3:17330754-17330773 | MS.gene28209:intron | 35.0% |
| ! | AAATTTGAGGCAAGTGTGAT+GGG | - | chr3.3:17331871-17331890 | None:intergenic | 35.0% |
| ! | AGCTTATGTTGTTATTCAGC+TGG | + | chr3.3:17332778-17332797 | MS.gene28209:CDS | 35.0% |
| ! | ATCATGAGTCACTTTGTCTA+TGG | + | chr3.3:17332065-17332084 | MS.gene28209:intron | 35.0% |
| ! | CAAAGCACATTTTTAATGCG+TGG | + | chr3.3:17332535-17332554 | MS.gene28209:intron | 35.0% |
| ! | CCGTCAACATTGATTATGAA+TGG | + | chr3.3:17330824-17330843 | MS.gene28209:CDS | 35.0% |
| ! | GATTAATAGCATGGACTAAG+AGG | + | chr3.3:17331509-17331528 | MS.gene28209:intron | 35.0% |
| ! | TTATTTTCCTAGGTCAGCTT+AGG | + | chr3.3:17331549-17331568 | MS.gene28209:intron | 35.0% |
| !! | ATGTTGGTTTGCTTTCAAAG+AGG | + | chr3.3:17331185-17331204 | MS.gene28209:intron | 35.0% |
| !! | CATTGGTTTCCTCATAAAAG+AGG | - | chr3.3:17331719-17331738 | None:intergenic | 35.0% |
| !!! | AGTGGAACAAAGGTTTTGAA+TGG | + | chr3.3:17330600-17330619 | MS.gene28209:CDS | 35.0% |
| !!! | GAACAAAGGTTTTGAATGGT+GGG | + | chr3.3:17330604-17330623 | MS.gene28209:CDS | 35.0% |
| !!! | TTTTTTTCATTCTATCCGGC+AGG | + | chr3.3:17332334-17332353 | MS.gene28209:intron | 35.0% |
| ATCAAACCATTGCAAGAAGG+GGG | - | chr3.3:17331604-17331623 | None:intergenic | 40.0% | |
| ATTCGATGTCGTAGTCGAAT+TGG | + | chr3.3:17331964-17331983 | MS.gene28209:intron | 40.0% | |
| CAAAACCTTTGTTCCACTTC+CGG | - | chr3.3:17330598-17330617 | None:intergenic | 40.0% | |
| CAAGAAGACAACAATGTTGC+AGG | - | chr3.3:17332025-17332044 | None:intergenic | 40.0% | |
| CACATAAATAAGGGTCTGGA+AGG | + | chr3.3:17330994-17331013 | MS.gene28209:intron | 40.0% | |
| CATCAGAAAAAGTGACTCCA+AGG | - | chr3.3:17331812-17331831 | None:intergenic | 40.0% | |
| CATGACCTTCATAGAACTGT+TGG | - | chr3.3:17330673-17330692 | None:intergenic | 40.0% | |
| GAAGTACATCTATTCCAGAC+GGG | + | chr3.3:17332821-17332840 | MS.gene28209:CDS | 40.0% | |
| GCAATGAAGCCAATTCAACT+CGG | - | chr3.3:17331996-17332015 | None:intergenic | 40.0% | |
| GCTATCAAACCATTGCAAGA+AGG | - | chr3.3:17331607-17331626 | None:intergenic | 40.0% | |
| TCATCAAGATATCCAACCCT+TGG | + | chr3.3:17331792-17331811 | MS.gene28209:intron | 40.0% | |
| ! | ATGTGCTTTGGATCGATTAG+TGG | - | chr3.3:17332525-17332544 | None:intergenic | 40.0% |
| ! | ATTGTCCCTTTTTCTTCGAG+TGG | + | chr3.3:17332848-17332867 | MS.gene28209:CDS | 40.0% |
| ! | CGTAATACTCTGATTTGCAC+TGG | + | chr3.3:17332206-17332225 | MS.gene28209:intron | 40.0% |
| ! | GAAATTTGAGGCAAGTGTGA+TGG | - | chr3.3:17331872-17331891 | None:intergenic | 40.0% |
| !! | TTTGAATGGTGGGTTTGACA+AGG | + | chr3.3:17330614-17330633 | MS.gene28209:CDS | 40.0% |
| !!! | ATCTTTTGGTGGATTAGAGG+AGG | + | chr3.3:17330768-17330787 | MS.gene28209:CDS | 40.0% |
| !!! | GGAACAAAGGTTTTGAATGG+TGG | + | chr3.3:17330603-17330622 | MS.gene28209:CDS | 40.0% |
| !!! | GGAGTCACTTTTTCTGATGT+TGG | + | chr3.3:17331813-17331832 | MS.gene28209:intron | 40.0% |
| !!! | TCTTTTGGTGGATTAGAGGA+GGG | + | chr3.3:17330769-17330788 | MS.gene28209:CDS | 40.0% |
| !!! | TGCATCTTTTGGTGGATTAG+AGG | + | chr3.3:17330765-17330784 | MS.gene28209:CDS | 40.0% |
| !!! | TGGTTTTTTTGGTCCTGTCA+TGG | + | chr3.3:17332653-17332672 | MS.gene28209:intron | 40.0% |
| !!! | TTTTTTCCCCCTTCTTGCAA+TGG | + | chr3.3:17331595-17331614 | MS.gene28209:intron | 40.0% |
| AAGGGACAATAAAACCCGTC+TGG | - | chr3.3:17332838-17332857 | None:intergenic | 45.0% | |
| AATGTTGACGGTTCCTGTCA+TGG | - | chr3.3:17330815-17330834 | None:intergenic | 45.0% | |
| GAAAAAGTGACTCCAAGGGT+TGG | - | chr3.3:17331807-17331826 | None:intergenic | 45.0% | |
| GCTGGTGTCTTTATGCTGAA+GGG | + | chr3.3:17332628-17332647 | MS.gene28209:intron | 45.0% | |
| GGTAGTGCCTTCCTCTTATT+TGG | + | chr3.3:17330845-17330864 | MS.gene28209:intron | 45.0% | |
| GTCGATCTCAAGGTTGTTGT+TGG | + | chr3.3:17331935-17331954 | MS.gene28209:intron | 45.0% | |
| TAAGCAAATCCTCAACCTGC+CGG | - | chr3.3:17332352-17332371 | None:intergenic | 45.0% | |
| TCAACGTTTGCGATTCTTCG+TGG | + | chr3.3:17332383-17332402 | MS.gene28209:intron | 45.0% | |
| TGCTGGTGTCTTTATGCTGA+AGG | + | chr3.3:17332627-17332646 | MS.gene28209:intron | 45.0% | |
| TGTCTTTATGCTGAAGGGAC+TGG | + | chr3.3:17332633-17332652 | MS.gene28209:intron | 45.0% | |
| TTCAGCATAAAGACACCAGC+AGG | - | chr3.3:17332628-17332647 | None:intergenic | 45.0% | |
| ! | AGCATGGACTAAGAGGCTTT+GGG | + | chr3.3:17331516-17331535 | MS.gene28209:intron | 45.0% |
| ! | AGGTTGAGGATTTGCTTAGG+AGG | + | chr3.3:17332354-17332373 | MS.gene28209:intron | 45.0% |
| ! | CAGGATACTGCATCTTTTGG+TGG | + | chr3.3:17330757-17330776 | MS.gene28209:intron | 45.0% |
| ! | GATCTCAAGGTTGTTGTTGG+TGG | + | chr3.3:17331938-17331957 | MS.gene28209:intron | 45.0% |
| ! | GTCACTTTGTCTATGGCAAG+AGG | + | chr3.3:17332072-17332091 | MS.gene28209:intron | 45.0% |
| ! | TAGCATGGACTAAGAGGCTT+TGG | + | chr3.3:17331515-17331534 | MS.gene28209:intron | 45.0% |
| ! | TGGTTGTGTCCGAGTTGAAT+TGG | + | chr3.3:17331984-17332003 | MS.gene28209:intron | 45.0% |
| !! | AATGGTGGGTTTGACAAGGT+CGG | + | chr3.3:17330618-17330637 | MS.gene28209:CDS | 45.0% |
| !!! | AATGCGTGGAGTGCTGTTTT+TGG | + | chr3.3:17332549-17332568 | MS.gene28209:intron | 45.0% |
| !!! | CTTTTGGTGGATTAGAGGAG+GGG | + | chr3.3:17330770-17330789 | MS.gene28209:CDS | 45.0% |
| !!! | GCTGAAGGGACTGGTTTTTT+TGG | + | chr3.3:17332642-17332661 | MS.gene28209:intron | 45.0% |
| !! | AAATTTATATAACATAAATT+CGG | - | chr3.3:17332165-17332184 | None:intergenic | 5.0% |
| !! | AATATAATAAAAGTTTAAAT+TGG | + | chr3.3:17331752-17331771 | MS.gene28209:intron | 5.0% |
| AGCAAAACTGCAGCCATGAC+AGG | - | chr3.3:17332669-17332688 | None:intergenic | 50.0% | |
| CCAATCACCTAAGCTGACCT+AGG | - | chr3.3:17331559-17331578 | None:intergenic | 50.0% | |
| CCTAGGTCAGCTTAGGTGAT+TGG | + | chr3.3:17331556-17331575 | MS.gene28209:intron | 50.0% | |
| CTTCCTGCTGTGTGCAAATG+TGG | + | chr3.3:17332602-17332621 | MS.gene28209:intron | 50.0% | |
| TCATTCTATCCGGCAGGTTG+AGG | + | chr3.3:17332340-17332359 | MS.gene28209:intron | 50.0% | |
| ! | GGCAGGTTGAGGATTTGCTT+AGG | + | chr3.3:17332351-17332370 | MS.gene28209:intron | 50.0% |
| !!! | GTGCTGTTTTTGGAGTGCAG+CGG | + | chr3.3:17332559-17332578 | MS.gene28209:intron | 50.0% |
| !!! | TGGCTGCAGTTTTGCTGTTG+CGG | + | chr3.3:17332673-17332692 | MS.gene28209:intron | 50.0% |
| !!! | TGTTTTTGGAGTGCAGCGGT+GGG | + | chr3.3:17332563-17332582 | MS.gene28209:intron | 50.0% |
| AGGCCACATTTGCACACAGC+AGG | - | chr3.3:17332608-17332627 | None:intergenic | 55.0% | |
| GGTGGTTACAGAGGTGGTGA+CGG | + | chr3.3:17330570-17330589 | MS.gene28209:CDS | 55.0% | |
| TGTGTGCAAATGTGGCCTGC+TGG | + | chr3.3:17332610-17332629 | MS.gene28209:intron | 55.0% | |
| !! | GCAGGATTCGGTGGTTACAG+AGG | + | chr3.3:17330561-17330580 | MS.gene28209:CDS | 55.0% |
| !! | GGATTCGGTGGTTACAGAGG+TGG | + | chr3.3:17330564-17330583 | MS.gene28209:CDS | 55.0% |
| !!! | CAGTTTTGCTGTTGCGGTGC+TGG | + | chr3.3:17332679-17332698 | MS.gene28209:intron | 55.0% |
| !!! | CTGTTTTTGGAGTGCAGCGG+TGG | + | chr3.3:17332562-17332581 | MS.gene28209:intron | 55.0% |
| !!! | GTTTTTGGAGTGCAGCGGTG+GGG | + | chr3.3:17332564-17332583 | MS.gene28209:intron | 55.0% |
| !!! | TTTTGCTGTTGCGGTGCTGG+TGG | + | chr3.3:17332682-17332701 | MS.gene28209:CDS | 55.0% |
| !!! | TTTTTGGAGTGCAGCGGTGG+GGG | + | chr3.3:17332565-17332584 | MS.gene28209:intron | 55.0% |
| CACAAACCGCACCACAGGAC+AGG | - | chr3.3:17332711-17332730 | None:intergenic | 60.0% | |
| CTGCAGCAGTGGCAGTTAGC+AGG | + | chr3.3:17332732-17332751 | MS.gene28209:CDS | 60.0% | |
| CTGTCCTGTGGTGCGGTTTG+TGG | + | chr3.3:17332709-17332728 | MS.gene28209:CDS | 60.0% | |
| GCAGTGGCAGTTAGCAGGTG+CGG | + | chr3.3:17332737-17332756 | MS.gene28209:CDS | 60.0% | |
| GGGTTTGACAAGGTCGGTGG+TGG | + | chr3.3:17330624-17330643 | MS.gene28209:CDS | 60.0% | |
| ! | CGGTGCCGGAAGTGGAACAA+AGG | + | chr3.3:17330590-17330609 | MS.gene28209:CDS | 60.0% |
| ! | GGTGGGTTTGACAAGGTCGG+TGG | + | chr3.3:17330621-17330640 | MS.gene28209:CDS | 60.0% |
| !! | TACAGAGGTGGTGACGGTGC+CGG | + | chr3.3:17330576-17330595 | MS.gene28209:CDS | 60.0% |
| !! | TGACAAGGTCGGTGGTGGAG+TGG | + | chr3.3:17330629-17330648 | MS.gene28209:CDS | 60.0% |
| CGGTGCACATCGGCCATGAC+AGG | + | chr3.3:17330799-17330818 | MS.gene28209:CDS | 65.0% | |
| GATTAGAGGAGGGGTCGCCG+CGG | + | chr3.3:17330779-17330798 | MS.gene28209:CDS | 65.0% | |
| GCAGCCACAAACCGCACCAC+AGG | - | chr3.3:17332716-17332735 | None:intergenic | 65.0% | |
| GCGGTTTGTGGCTGCAGCAG+TGG | + | chr3.3:17332721-17332740 | MS.gene28209:CDS | 65.0% | |
| GTCATGGCCGATGTGCACCG+CGG | - | chr3.3:17330799-17330818 | None:intergenic | 65.0% | |
| TGGTGGCCTGTCCTGTGGTG+CGG | + | chr3.3:17332702-17332721 | MS.gene28209:CDS | 65.0% | |
| ! | CGGTGGGGGTTGGGGGTTTT+GGG | + | chr3.3:17332579-17332598 | MS.gene28209:intron | 65.0% |
| !! | TGCTGTTGCGGTGCTGGTGG+TGG | + | chr3.3:17332685-17332704 | MS.gene28209:CDS | 65.0% |
| AGTGCAGCGGTGGGGGTTGG+GGG | + | chr3.3:17332572-17332591 | MS.gene28209:intron | 70.0% | |
| GAGTGCAGCGGTGGGGGTTG+GGG | + | chr3.3:17332571-17332590 | MS.gene28209:intron | 70.0% | |
| GGAGTGCAGCGGTGGGGGTT+GGG | + | chr3.3:17332570-17332589 | MS.gene28209:intron | 70.0% | |
| TGGAGTGCAGCGGTGGGGGT+TGG | + | chr3.3:17332569-17332588 | MS.gene28209:intron | 70.0% | |
| ! | GCGGTGGGGGTTGGGGGTTT+TGG | + | chr3.3:17332578-17332597 | MS.gene28209:intron | 70.0% |
| !! | GCTGGTGGTGGCCTGTCCTG+TGG | + | chr3.3:17332697-17332716 | MS.gene28209:CDS | 70.0% |
| !! | GGTGGTGACGGTGCCGGAAG+TGG | + | chr3.3:17330582-17330601 | MS.gene28209:CDS | 70.0% |
| GGGGTCGCCGCGGTGCACAT+CGG | + | chr3.3:17330789-17330808 | MS.gene28209:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 17330558 | 17332874 | 17330558 | ID=MS.gene28209 |
| chr3.3 | mRNA | 17330558 | 17332874 | 17330558 | ID=MS.gene28209.t1;Parent=MS.gene28209 |
| chr3.3 | exon | 17330558 | 17330686 | 17330558 | ID=MS.gene28209.t1.exon1;Parent=MS.gene28209.t1 |
| chr3.3 | CDS | 17330558 | 17330686 | 17330558 | ID=cds.MS.gene28209.t1;Parent=MS.gene28209.t1 |
| chr3.3 | exon | 17330760 | 17330845 | 17330760 | ID=MS.gene28209.t1.exon2;Parent=MS.gene28209.t1 |
| chr3.3 | CDS | 17330760 | 17330845 | 17330760 | ID=cds.MS.gene28209.t1;Parent=MS.gene28209.t1 |
| chr3.3 | exon | 17332682 | 17332874 | 17332682 | ID=MS.gene28209.t1.exon3;Parent=MS.gene28209.t1 |
| chr3.3 | CDS | 17332682 | 17332874 | 17332682 | ID=cds.MS.gene28209.t1;Parent=MS.gene28209.t1 |
| Gene Sequence |
| Protein sequence |
