AlfalfaGEDB | MS.gene28225

M. sativa cultivar XinJiangDaYe / MS.gene28225

KEGG: K12741
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28225.t1	XP_024635751.1	95.4	108	5	0	1	108	1	108	9.10E-49	204.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28225.t1	Q9FNR1	55.6	108	44	2	1	108	1	104	1.3e-27	125.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28225.t1	G7IZB0	95.4	108	5	0	1	108	1	108	6.5e-49	204.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050277	MS.gene28225	0.838281	3.16E-57	-1.69E-46
MS.gene055808	MS.gene28225	0.80825	3.40E-50	-1.69E-46
MS.gene056091	MS.gene28225	0.819547	1.10E-52	-1.69E-46
MS.gene056631	MS.gene28225	0.83133	1.77E-55	-1.69E-46
MS.gene057705	MS.gene28225	0.829487	5.01E-55	-1.69E-46
MS.gene06001	MS.gene28225	0.832119	1.13E-55	-1.69E-46
MS.gene060830	MS.gene28225	0.847618	1.03E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28225.t1	MTR_3g025880	73.566	401	78	5	1	379	1	395	8.17e-156	452
MS.gene28225.t1	MTR_3g025880	74.101	278	29	6	233	477	168	435	6.42e-90	283
MS.gene28225.t1	MTR_3g025880	53.670	218	49	8	298	504	175	351	4.12e-29	120
MS.gene28225.t1	MTR_4g109540	70.370	108	30	1	1	108	1	106	1.02e-48	169
MS.gene28225.t1	MTR_4g109540	66.379	116	29	2	1	108	1	114	3.36e-46	163
MS.gene28225.t1	MTR_7g013730	60.000	110	40	2	1	110	1	106	1.22e-37	139
MS.gene28225.t1	MTR_7g013740	59.259	108	40	2	1	108	1	104	1.90e-31	119
MS.gene28225.t1	MTR_3g014000	52.381	105	36	3	1	105	1	91	5.35e-24	98.2
MS.gene28225.t1	MTR_3g084040	45.614	114	49	4	1	112	1	103	1.64e-23	95.5
MS.gene28225.t1	MTR_3g084040	46.296	108	49	3	1	108	1	99	2.77e-22	93.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28225.t1	AT5G61030	55.556	108	44	2	1	108	1	104	1.35e-35	135
MS.gene28225.t1	AT5G61030	55.556	108	44	2	1	108	1	104	1.35e-35	135
MS.gene28225.t1	AT1G74230	52.778	108	40	3	1	108	1	97	1.24e-27	112
MS.gene28225.t1	AT4G13850	42.609	115	43	2	1	108	1	99	6.45e-21	89.0
MS.gene28225.t1	AT4G13850	42.609	115	43	2	1	108	1	99	7.56e-21	89.4
MS.gene28225.t1	AT4G13850	42.609	115	43	2	1	108	1	99	9.58e-21	89.4
MS.gene28225.t1	AT4G13850	42.609	115	43	2	1	108	1	99	1.09e-20	89.4
MS.gene28225.t1	AT5G06210	55.385	65	29	0	44	108	34	98	1.28e-18	83.2
MS.gene28225.t1	AT2G37510	48.780	82	36	2	36	112	27	107	2.76e-17	79.3
MS.gene28225.t1	AT1G18630	39.130	115	54	4	1	110	4	107	6.89e-17	78.6

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Find 177 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGCAAATTATGGTG+CGG	0.743182	3.3:-17731309	MS.gene28225:CDS
AACAGTGCCAATTACAGTGG+TGG	0.607861	3.3:-17730873	MS.gene28225:CDS
AATACCAAGCTGTTTGTAGG+AGG	0.614431	3.3:-17733877	MS.gene28225:intron
AATACCCTGGAAGTGCAACA+GGG	0.711945	3.3:-17730713	MS.gene28225:CDS
AATGATGGAACTACCAGTGG+TGG	0.655253	3.3:-17731602	MS.gene28225:CDS
AATGCTGCTGGAGGTTATGG+CGG	0.635356	3.3:-17731647	MS.gene28225:CDS
AATTATGGTGCGGCTGTAGG+CGG	0.623218	3.3:-17731299	MS.gene28225:CDS
AATTATGGTGCGGCTGTAGG+TGG	0.596398	3.3:-17731050	MS.gene28225:CDS
AATTATGGTGCTGCTGTAGG+CGG	0.652021	3.3:-17731473	MS.gene28225:CDS
AATTATGGTGCTGCTGTAGG+CGG	0.652021	3.3:-17731560	MS.gene28225:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATGCAAATTATGGTG+CGG	-	chr3.3:17733092-17733111	MS.gene28225:intron	30.0%
AACAACGGACAATATTACTT+TGG	-	chr3.3:17732514-17732533	MS.gene28225:CDS	30.0%
ACAACGGACAATATTACTTT+GGG	-	chr3.3:17732515-17732534	MS.gene28225:CDS	30.0%
AGCATTTGTATATGTGTACA+TGG	+	chr3.3:17731928-17731947	None:intergenic	30.0%
AGTGATAACCATTATAGTAC+CGG	-	chr3.3:17733798-17733817	MS.gene28225:intron	30.0%
ATTCAAATTGAAGACGTGTT+TGG	+	chr3.3:17730963-17730982	None:intergenic	30.0%
ATTCTATATCACACATGGTA+TGG	+	chr3.3:17732248-17732267	None:intergenic	30.0%
ATTCTTATCTTATGCCCTAA+GGG	-	chr3.3:17732678-17732697	MS.gene28225:intron	30.0%
ATTTCTTGTAAAACCACGAT+AGG	-	chr3.3:17731010-17731029	MS.gene28225:CDS	30.0%
CAATGTTCATTGGAATCAAT+TGG	+	chr3.3:17731685-17731704	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	17730572	17734025	17730572	ID=MS.gene28225
chr3.3	mRNA	17730572	17734025	17730572	ID=MS.gene28225.t1;Parent=MS.gene28225
chr3.3	exon	17733878	17734025	17733878	ID=MS.gene28225.t1.exon1;Parent=MS.gene28225.t1
chr3.3	CDS	17733878	17734025	17733878	ID=cds.MS.gene28225.t1;Parent=MS.gene28225.t1
chr3.3	exon	17733369	17733437	17733369	ID=MS.gene28225.t1.exon2;Parent=MS.gene28225.t1
chr3.3	CDS	17733369	17733437	17733369	ID=cds.MS.gene28225.t1;Parent=MS.gene28225.t1
chr3.3	exon	17733132	17733238	17733132	ID=MS.gene28225.t1.exon3;Parent=MS.gene28225.t1
chr3.3	CDS	17733132	17733238	17733132	ID=cds.MS.gene28225.t1;Parent=MS.gene28225.t1
chr3.3	exon	17732483	17732576	17732483	ID=MS.gene28225.t1.exon4;Parent=MS.gene28225.t1
chr3.3	CDS	17732483	17732576	17732483	ID=cds.MS.gene28225.t1;Parent=MS.gene28225.t1
chr3.3	exon	17730572	17731728	17730572	ID=MS.gene28225.t1.exon5;Parent=MS.gene28225.t1
chr3.3	CDS	17730572	17731728	17730572	ID=cds.MS.gene28225.t1;Parent=MS.gene28225.t1

Gene Sequence

>MS.gene28225

ATGGCTTTCTTTGGTAGAGTTGGGAGTTTATTAAGGAATGCAGCAAATACGAAGATCATTTCTGAGTTGAAGTTACGTTCTTCCCCATCTGTTTTCCAAGCCATACGGTGCTTCTCGGGTACTCCCAATACCAAGCTGTTTGTAGGAGGTGAGTTTTAATTACAATCTACTCTAATTTGCAAACACATGATGTCTATTTTTCATATATATTGAAAAGGACCTTTGTTGAGGGTTCTCACAGTTCATGTTATGAAGCTATGAAGCACCGACGCAACACATTCACCAGACATTGGCACTAACCCGTAGACACTGATAAATAATTTTAGACAATAGAAGTGATTGAACGTAACTATATGTGTTGGTATTGAACACTTACACGTGCCAAACACCAAACACGTCTTCAATTTGAATTGCCGGTGCTACATAGCTGTGTAGTCAATTTCTTGTAAAACCACGATAGGTCTGCTATGATAAATCCATATTGGGTTTGCCCCTGTTTTAAACCCTGTCATGCCAAGATAGGATCTTTATGGTTGAAAATGCTAATAATTATTAAAAATGAATTCATGCAAATTCATGTGTTTGCAGGTATTTCGTATGATACTGATGAACAAAGTTTGAGCGATGCTTTTTCAAGATATGGCCAAGTTCTTGACGGTGAGTTGTCAGATTATCTGTTTTCTTTTTCCCTTCTAGGGGGGATTCAGTTGAGAGGCTGTTTAAACTAAAGTCACTTGTGTTAATTGAATTCAATATTAATTGCTGTTTAATCTCATTGTTTTTATAGCAAGGATAATTATGGATCGCGAAACTGGTAGGTCCAAAGGATTTGGCTTTGTTACTTACAATACTGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGCCAGGTAACTCAGATTATTATTTTTAGTATTATTAGTAATGAACTTCCGAATGATTGCATACACGTACATGATTATCAGTATATTACTATACATACGAGTTGTATCTCGGTTCGATACAAAATTGAACTCAATCAATATGAATCTCTAGTGTGTATTTATTTTGGACATGTCATTGAATCATGATTCATTATGTTGAATCCCGATTAACTATAATGAATCCCAATTGATTCCAATGAACATTGTGTAAGCTTAGCGTAGTCAGCCACTTCTTTTTTTGTCAACTTTGTATAGTTAGTCACTTTTCTTTTGTTATTTGATTTCAACTAGAATTTAGCTATATCACATGTTTTTACTTAAAAATATCATTTTTATTAGTAATATATCTTACGATTCATAATAAGATTCGATTCACAATTTGGAAAATAGTTTTTCCGATTCACGATATGTTTCTCAATTCGATAACCATGTACACATATACAAATGCTGAAACTACATAGGTAAGCCATTGAATGAAGTTTGTGAGCTGTACTTAAGTGCAAATTTCGTGTGCTTTTACAGTTAGTGCTTGTGTCTGAATTTGTTGAGTGTTATTGCTTTTTTGTCCCTTGTCCTTATAATTGTCGAGCTTTTACTTTTGTGTCTAATCATCCAGGTTACTGCTACTGTCAATATTAGTTTGGGTTTGATTATGATAATTTTCATGAATTAGTGTTGTCTAATTATTATTTTTTTGGTAGTGGCCGGAATTCGAACCCCGGACCTTTGCATATATTATGCATTGTCCATACCATGTGTGATATAGAATTTCCCAGTACTGCCTATATAATTAATCCATAATTGATAAAGAGAATATCATGTCATCATCCTTGTCGTTGCATGCTGTTATTGTTCCTTCATTTGATAGGCTCATCTGTGAGAAGATATCCATGTGGTCTCCAGTTAAAATTGTTCCTTCATGTGATGATATAAACTAGTTTACAACTTCACAAGTGATACCTGTCATCTTACAAACTTTTTTTTTATACTTCATGTTAATTTAATTGGCATTTGTAACAACGGACAATATTACTTTGGGTCTTGTTAACTTGTGCCCTAAGGGCACAAGATAAGAAACTAAATATAGAAATTTAGTTTTGGAAATTGTGCATTCATAACCTTAAAAGCTTAAAAACTTATCTTTCCAATGCAATATTTATTGTTTAATTCTATTTTAAGATTCTTATCTTATGCCCTAAGGGCACAAGTTAGCATTTCCCTATTACTTTTACCTTTCTTATTTATTTATGAATGTAATTTTTGTTTTCAGGATCTGCATGGTCGCCGAGTTGGTGTAAATTTTGCCAATGAAAGACCCCGTGGTGGTTTTGATGGACCTTATGGTGGTGGAGGTGGTGGTGGATATTCAGGTGGTTATGGTAACTCTTCATACGGTGGTGGGTATGGTAATGCTGCGGGCTATAGTGGTAATGCTGCTGGAGGTTATGGCGGAGGTGGTTATGGAAACACTTACAATGATGGAACTACCAGTGGTGGTTATGGTGGAAACGATGCAAATTATGGTGCTGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTCCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCTGCTGTAGGCGGTGGTGAAAGCATTGCTGTTAACTATGGTAGTGCTCCTAGTGTTGGTGGTTATGGAAACGATGCAAATTATGGTGCTGTTGTAGGCGGTGGTGAAAGCAATGCTGGTAACTATGGTAGTCCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCAGCTGTAGGCAGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGTAACAATGTGAATTATGGTGCTGCTGATACTGCTAACTATGGCAGTGCTCCTGGTGTTGGTGGTTATGGTGGTGGTAACAGTGCAAATTATGGTGCGGCTGTAGGTGGTGGAGAAAGCAATTCTGTTAACTACGGTAGTGCTCCTGTTGCTGGTGTTTACGGTGGTGCTAACAATGTAAATTATGGTACTGCTGTAGGTGCTAGAGAAAGCAATTCTGTTAACTATGGTAGTGCACCTGGTGTTGGTGGTTATGGTGGTGGTAACAGTGCCAATTACAGTGGTGGAGAAAGCAATTCTGTTAACTATGGTATTGCTCCTGGTGTTGGTGGTTATGGTGCTGCTGCTGGATTTGGCAAGAGTGATAACCATTATAGTACCGGTGGTGTTGGTGGGGGTCCCAGCAATGGTTTCTCCCGTAATCAATACCCTGGAAGTGCAACAGGGTATAGCAGTGGCAGTTCAGCTCCCGGGAGCAGCTTTGCTGGTGGATATGATAGAACTGGAGGACTTGGATACGGTGAAAGTGGTCAAGAAGATTTCAAGAACGATGATCATGAAGTTGATGCTTTTGCTAAACGGGCTTGA

Protein sequence

>MS.gene28225.t1

MAFFGRVGSLLRNAANTKIISELKLRSSPSVFQAIRCFSGTPNTKLFVGGISYDTDEQSLSDAFSRYGQVLDARIIMDRETGRSKGFGFVTYNTVEEASSAIQALDGQLVLVSEFVECYCFFVPCPYNCRAFTFVSNHPGGYGNSSYGGGYGNAAGYSGNAAGGYGGGGYGNTYNDGTTSGGYGGNDANYGAAVGGGESNAVNYGSPPGVGGYGNNANYGAAVGGGESIAVNYGSAPSVGGYGNDANYGAVVGGGESNAGNYGSPPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGSGESNAVNYGSAPGVGGYGNNVNYGAADTANYGSAPGVGGYGGGNSANYGAAVGGGESNSVNYGSAPVAGVYGGANNVNYGTAVGARESNSVNYGSAPGVGGYGGGNSANYSGGESNSVNYGIAPGVGGYGAAAGFGKSDNHYSTGGVGGGPSNGFSRNQYPGSATGYSSGSSAPGSSFAGGYDRTGGLGYGESGQEDFKNDDHEVDAFAKRA