AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28405


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28405.t1 MTR_8g092890 96.718 579 19 0 1 579 67 645 0.0 1154
MS.gene28405.t1 MTR_3g095780 61.698 530 162 8 78 579 112 628 0.0 580
MS.gene28405.t1 MTR_1g007740 39.595 543 231 12 104 576 191 706 2.35e-126 390
MS.gene28405.t1 MTR_3g491920 41.399 529 234 10 107 577 190 700 4.03e-126 387
MS.gene28405.t1 MTR_8g100005 39.511 491 239 7 134 579 237 714 1.55e-112 352
MS.gene28405.t1 MTR_2g079740 36.641 524 235 10 138 579 350 858 1.44e-92 303
MS.gene28405.t1 MTR_7g060420 39.481 385 182 3 130 463 383 767 3.26e-80 273
MS.gene28405.t1 MTR_8g100005 45.200 250 93 2 135 340 238 487 5.26e-67 226
MS.gene28405.t1 MTR_4g119620 27.273 286 179 9 156 433 19 283 1.47e-25 108
MS.gene28405.t1 MTR_1g072140 24.911 281 171 10 158 429 21 270 2.58e-18 86.7
MS.gene28405.t1 MTR_3g106080 26.554 177 107 6 161 334 458 614 1.82e-13 73.9
MS.gene28405.t1 MTR_8g037340 22.000 250 176 6 210 441 208 456 3.20e-11 66.2
MS.gene28405.t1 MTR_1g091053 49.333 75 25 2 58 119 3 77 9.93e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28405.t1 AT1G48870 44.111 467 205 9 128 576 162 590 1.37e-121 371
MS.gene28405.t1 AT1G48870 44.111 467 205 9 128 576 162 590 1.37e-121 371
MS.gene28405.t1 AT1G48870 44.111 467 205 9 128 576 162 590 1.37e-121 371
MS.gene28405.t1 AT5G24320 38.418 531 244 11 104 577 188 692 5.16e-113 352
MS.gene28405.t1 AT5G53500 39.962 523 233 13 107 577 159 652 3.56e-112 349
MS.gene28405.t1 AT5G53500 39.962 523 233 13 107 577 159 652 3.56e-112 349
MS.gene28405.t1 AT5G24320 38.131 535 244 12 104 577 188 696 1.85e-111 348
MS.gene28405.t1 AT5G42010 38.043 552 236 16 101 579 191 709 5.80e-104 329
MS.gene28405.t1 AT1G64610 37.761 527 238 13 104 579 160 647 4.10e-101 320
MS.gene28405.t1 AT1G64610 37.761 527 238 13 104 579 160 647 4.10e-101 320
MS.gene28405.t1 AT3G15470 38.067 507 239 10 138 579 387 883 1.01e-98 320
MS.gene28405.t1 AT5G54200 37.549 514 252 11 128 579 319 825 2.03e-94 307
MS.gene28405.t1 AT5G42010 40.845 355 161 4 104 409 194 548 2.35e-81 266
MS.gene28405.t1 AT5G02430 39.305 374 178 3 139 463 386 759 7.06e-77 261
MS.gene28405.t1 AT2G37670 39.071 366 178 4 139 462 379 741 1.56e-75 258
MS.gene28405.t1 AT2G37670 39.071 366 178 4 139 462 380 742 1.75e-75 258
MS.gene28405.t1 AT3G49660 25.086 291 185 9 151 433 11 276 2.70e-22 98.6
MS.gene28405.t1 AT4G02730 26.814 317 188 12 123 429 5 287 9.70e-20 91.3
MS.gene28405.t1 AT2G43770 24.731 279 173 9 160 428 49 300 4.27e-16 80.5
MS.gene28405.t1 AT5G25150 27.684 177 105 6 161 334 457 613 9.67e-13 71.6
MS.gene28405.t1 AT5G25150 27.684 177 105 6 161 334 457 613 1.01e-12 71.6
MS.gene28405.t1 AT2G16405 28.105 153 91 2 179 330 188 322 1.42e-12 70.5

Find 116 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGATCCAATATGCAGATTT+TGG 0.140444 4.4:-9005598 None:intergenic
ATCAAGACATTCCACAATTT+TGG 0.147050 4.4:+9006371 MS.gene28405:CDS
GTGAGGCAAAAGAAGAATTT+TGG 0.149020 4.4:+9004148 MS.gene28405:CDS
TCACCTTCTGGTAAAGTATC+TGG 0.167154 4.4:+9004006 MS.gene28405:CDS
AGGACTCGCGCGTGTATATT+TGG 0.192771 4.4:+9005931 MS.gene28405:CDS
CAGTCCCAATGGTCAGTATT+TGG 0.195556 4.4:+9004392 MS.gene28405:CDS
TTTGTAGTTGGTTCTCTTAC+AGG 0.204905 4.4:+9005217 MS.gene28405:CDS
TTGATGGTAAAGTTCGAATA+TGG 0.250806 4.4:+9004991 MS.gene28405:CDS
TGGCTTGCCTGTTAGGCTTT+AGG 0.253307 4.4:+9006391 MS.gene28405:CDS
CAACAAGATTACTGGCATTC+AGG 0.268264 4.4:+9005418 MS.gene28405:CDS
TCTTGTTGGAAGATCTTAAA+AGG 0.284736 4.4:+9004073 MS.gene28405:CDS
TTCCAGTGATATCTTGGATT+TGG 0.289851 4.4:+9004548 MS.gene28405:CDS
TAATTCTCTGACAGTTGTTT+TGG 0.290037 4.4:-9005557 None:intergenic
GGTAATTGGTTCTTCATTGA+TGG 0.304868 4.4:+9006170 MS.gene28405:CDS
AATGCAAGCATTTCACCTTC+TGG 0.331414 4.4:+9003994 MS.gene28405:CDS
TCGATAATGGTAAAGCTAAT+AGG 0.334017 4.4:+9004175 MS.gene28405:CDS
TTATTGACTGGGCAGATATA+CGG 0.336332 4.4:+9005033 MS.gene28405:CDS
GATGACTGGTCGGTCACATT+GGG 0.337398 4.4:+9003934 MS.gene28405:CDS
GAGCTCATAAAGGACTAATA+TGG 0.338181 4.4:+9004358 MS.gene28405:CDS
TATTCGAACTTTACCATCAA+TGG 0.358267 4.4:-9004988 None:intergenic
ATTTAGCTTACACTTCTTCC+AGG 0.372892 4.4:+9003881 MS.gene28405:CDS
TTTATCAGTGGATCCATTGA+TGG 0.375545 4.4:+9004975 MS.gene28405:CDS
TTCTGAAGCTGAAGTCTTGT+TGG 0.380038 4.4:+9004059 MS.gene28405:CDS
AGATTCCAAAATCTGCATAT+TGG 0.388192 4.4:+9005593 MS.gene28405:CDS
TGGTCATTCCAGTGATATCT+TGG 0.395337 4.4:+9004542 MS.gene28405:CDS
GCATTAGGCAACAAGATTAC+TGG 0.396820 4.4:+9005410 MS.gene28405:CDS
GCATTGTCCTAAAGCCTAAC+AGG 0.399732 4.4:-9006398 None:intergenic
TCGCCACTTCAAGAATTGTT+TGG 0.405306 4.4:+9004522 MS.gene28405:CDS
TCTGGGAAGTTGGTTCTCTC+TGG 0.410316 4.4:+9004024 MS.gene28405:CDS
CATGGAAAGAAGAAAGCATT+AGG 0.419424 4.4:+9005395 MS.gene28405:CDS
CCCACTTGATGTAAATGAAC+CGG 0.420329 4.4:-9005886 None:intergenic
TGGATAAAACTGTTCGCGCT+TGG 0.427183 4.4:+9004709 MS.gene28405:CDS
CATGTGCAGGGATTTGTAGT+TGG 0.427358 4.4:+9005205 MS.gene28405:intron
CTAATGCTTTCTTCTTTCCA+TGG 0.431274 4.4:-9005394 None:intergenic
TGCAACAGTTACGCCCTTGA+AGG 0.436499 4.4:-9006021 None:intergenic
GATTCTTCTTTCGTCTTCGA+TGG 0.446992 4.4:+9004689 MS.gene28405:intron
CACCTTCTGGTAAAGTATCT+GGG 0.458891 4.4:+9004007 MS.gene28405:CDS
TCCGGTTCATTTACATCAAG+TGG 0.463250 4.4:+9005885 MS.gene28405:CDS
TGATGGTAAAGTTCGAATAT+GGG 0.463939 4.4:+9004992 MS.gene28405:CDS
CAAGAAATTAGAGCTCATAA+AGG 0.466629 4.4:+9004348 MS.gene28405:CDS
GTGATATCTTGGATTTGGCC+TGG 0.468041 4.4:+9004553 MS.gene28405:CDS
AAGATGGCGTTGTGCGCATA+TGG 0.468274 4.4:+9004427 MS.gene28405:CDS
TGATGACTGGTCGGTCACAT+TGG 0.471379 4.4:+9003933 MS.gene28405:CDS
CTCAGAAGTAACCTCTAGCT+TGG 0.473947 4.4:-9006120 None:intergenic
CATGTTGGAAGTTTCTCCTC+AGG 0.483782 4.4:-9006224 None:intergenic
CTATCAGGCCTTCCATGGTC+AGG 0.488291 4.4:+9005852 MS.gene28405:intron
GGGAAACATATCATTTCAGT+TGG 0.490890 4.4:+9005906 MS.gene28405:CDS
TATTTATCTGCGCCTCAAGC+TGG 0.494606 4.4:-9005370 None:intergenic
TTTCTGATATATTCCTTCCA+TGG 0.495796 4.4:-9006307 None:intergenic
TCGTTCTATCAGGCCTTCCA+TGG 0.502364 4.4:+9005847 MS.gene28405:intron
TTCATTGATGGTACATGTCG+AGG 0.508863 4.4:+9006182 MS.gene28405:CDS
CTAGCCAAATACTGACCATT+GGG 0.509035 4.4:-9004396 None:intergenic
AACTTCAATGACTTCAAAAG+TGG 0.509136 4.4:+9005954 MS.gene28405:CDS
TATTGACTGGGCAGATATAC+GGG 0.510784 4.4:+9005034 MS.gene28405:CDS
TTGGCTAGTGGAGGTGAAGA+TGG 0.511823 4.4:+9004411 MS.gene28405:CDS
GCTATAAGTTATCAACAAGA+TGG 0.514520 4.4:+9005068 MS.gene28405:CDS
GGAAGTTGGTTCTCTCTGGA+TGG 0.518254 4.4:+9004028 MS.gene28405:CDS
ATAGTAGCAGCTGGCAGTGA+TGG 0.524175 4.4:+9006344 MS.gene28405:CDS
TGGTAAAGTATCTGGGAAGT+TGG 0.533172 4.4:+9004014 MS.gene28405:CDS
ACTAGCCAAATACTGACCAT+TGG 0.537399 4.4:-9004397 None:intergenic
GTGAAGAACGAGTTATTGAC+TGG 0.539351 4.4:+9005021 MS.gene28405:CDS
ATCATTTGGAAGGGAAACAA+AGG 0.543245 4.4:-9004481 None:intergenic
TTTCTCTTGTGAACAAACCC+TGG 0.543560 4.4:-9003899 None:intergenic
AGGAAAATATTTCCAGCTTG+AGG 0.544685 4.4:+9005358 MS.gene28405:intron
GAGAGGATCGTGGCAAGCAG+TGG 0.545339 4.4:+9003961 MS.gene28405:CDS
TTTAGCTTACACTTCTTCCA+GGG 0.546525 4.4:+9003882 MS.gene28405:CDS
TGGTCAGGAAGTCAGATGTC+CGG 0.560460 4.4:+9005867 MS.gene28405:CDS
AATGAAAATTACTTTATCAG+TGG 0.560882 4.4:+9004963 MS.gene28405:CDS
GGCCAAATCCAAGATATCAC+TGG 0.565834 4.4:-9004550 None:intergenic
CTGAGGAGAAACTTCCAACA+TGG 0.568255 4.4:+9006225 MS.gene28405:CDS
CAAGAGCACAGACAGAGAGA+AGG 0.571987 4.4:+9004126 MS.gene28405:CDS
AAGGAATATATCAGAAACAT+GGG 0.572905 4.4:+9006313 MS.gene28405:CDS
GAAGGGAAACAAAGGGAGGA+CGG 0.573342 4.4:-9004473 None:intergenic
CAAGCTAGAGGTTACTTCTG+AGG 0.574127 4.4:+9006121 MS.gene28405:CDS
TCTGACTTCCTGACCATGGA+AGG 0.577834 4.4:-9005860 None:intergenic
AATGGTCAGTATTTGGCTAG+TGG 0.581244 4.4:+9004399 MS.gene28405:CDS
GCACAGACAGAGAGAAGGTG+AGG 0.583206 4.4:+9004131 MS.gene28405:CDS
AACATCAGGAAAGGCGACAA+AGG 0.583659 4.4:+9004222 MS.gene28405:CDS
TCATTTGGAAGGGAAACAAA+GGG 0.585294 4.4:-9004480 None:intergenic
TACTTACCAAAGCCTTTGTG+AGG 0.587036 4.4:-9004765 None:intergenic
GAAGGAATATATCAGAAACA+TGG 0.587961 4.4:+9006312 MS.gene28405:CDS
ACATATCATTTCAGTTGGAG+AGG 0.592725 4.4:+9005911 MS.gene28405:CDS
TGACCAAACAATTCTTGAAG+TGG 0.593619 4.4:-9004525 None:intergenic
TTCCCAGATACTTTACCAGA+AGG 0.594322 4.4:-9004009 None:intergenic
ACAAGAGGTAAATCCCATGT+TGG 0.595289 4.4:-9006239 None:intergenic
TGTCACGAAGATAGTAGCCA+TGG 0.599083 4.4:+9006290 MS.gene28405:CDS
CGGTCACATTGGGGTCGGAG+AGG 0.600622 4.4:+9003944 MS.gene28405:CDS
ATGACTGGTCGGTCACATTG+GGG 0.606700 4.4:+9003935 MS.gene28405:CDS
CTGGTCGGTCACATTGGGGT+CGG 0.607068 4.4:+9003939 MS.gene28405:CDS
GCGTAACTGTTGCAATACCT+TGG 0.607882 4.4:+9006030 MS.gene28405:CDS
AAGGCGGCGTGAGTATGAAG+TGG 0.612912 4.4:+9004092 MS.gene28405:CDS
GAGTTCAGTGAGGTATACAT+TGG 0.614698 4.4:+9004324 MS.gene28405:CDS
TCACATTCATCTTCTACAAG+AGG 0.615378 4.4:-9006254 None:intergenic
GGTCTAACGATAGTAGCAGC+TGG 0.616322 4.4:+9006335 MS.gene28405:CDS
CCGGTTCATTTACATCAAGT+GGG 0.623114 4.4:+9005886 MS.gene28405:CDS
TACTTCTATGACATGGCCTG+AGG 0.623220 4.4:+9006208 MS.gene28405:CDS
TAACAGGCAAGCCAAAATTG+TGG 0.625636 4.4:-9006382 None:intergenic
ACTTACCAAAGCCTTTGTGA+GGG 0.626300 4.4:-9004764 None:intergenic
GACATCTGACTTCCTGACCA+TGG 0.626991 4.4:-9005864 None:intergenic
ACGAAGATAGTAGCCATGGA+AGG 0.628021 4.4:+9006294 MS.gene28405:CDS
GATGGTAAAGTTCGAATATG+GGG 0.630516 4.4:+9004993 MS.gene28405:CDS
ACTATGAAATTCAGTCCCAA+TGG 0.634522 4.4:+9004381 MS.gene28405:CDS
GAGGCGCAGATAAATATCCA+TGG 0.635034 4.4:+9005377 MS.gene28405:CDS
GAATAAAACTCGTAGAGTGA+AGG 0.636114 4.4:+9004275 MS.gene28405:CDS
GAGATTGTTCAGAAATACAA+AGG 0.642821 4.4:+9005624 MS.gene28405:CDS
ATTGGGGTCGGAGAGGATCG+TGG 0.644123 4.4:+9003951 MS.gene28405:CDS
TGAGGAGAAACTTCCAACAT+GGG 0.648751 4.4:+9006226 MS.gene28405:CDS
GAGGTGGATGGAGTTCAGTG+AGG 0.649416 4.4:+9004314 MS.gene28405:CDS
GGTCAGTATTTGGCTAGTGG+AGG 0.649574 4.4:+9004402 MS.gene28405:CDS
GAGGTTCTACTTCTATGACA+TGG 0.678336 4.4:+9006201 MS.gene28405:CDS
ACTCACATCTGAATTAGACC+AGG 0.684342 4.4:-9004571 None:intergenic
TGTTGGAAGATCTTAAAAGG+CGG 0.697921 4.4:+9004076 MS.gene28405:CDS
TGAAGAACGAGTTATTGACT+GGG 0.701967 4.4:+9005022 MS.gene28405:CDS
ACTGTTGCAATACCTTGGTG+TGG 0.716842 4.4:+9006035 MS.gene28405:CDS
AGGAATATATCAGAAACATG+GGG 0.726541 4.4:+9006314 MS.gene28405:CDS
TTTGGAAGGGAAACAAAGGG+AGG 0.738048 4.4:-9004477 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTGAAGTACAAAATA+AGG - chr4.4:9005509-9005528 None:intergenic 15.0%
!! TCAATTTGAAAAATATCATT+TGG - chr4.4:9004498-9004517 None:intergenic 15.0%
!! TTTAGAAACTAATTTATCTT+CGG - chr4.4:9005319-9005338 None:intergenic 15.0%
!!! AAATGATATTTTTCAAATTG+AGG + chr4.4:9004497-9004516 MS.gene28405:CDS 15.0%
!! AATGAAAATTACTTTATCAG+TGG + chr4.4:9004963-9004982 MS.gene28405:CDS 20.0%
!! TTCTTCGAAAAAAATGAAAT+CGG + chr4.4:9005977-9005996 MS.gene28405:CDS 20.0%
!! TTGAAAAATATCATTTGGAA+GGG - chr4.4:9004493-9004512 None:intergenic 20.0%
!! TTTGAAAAATATCATTTGGA+AGG - chr4.4:9004494-9004513 None:intergenic 20.0%
!!! AAGCATTTTAATTTGTATTC+CGG + chr4.4:9005468-9005487 MS.gene28405:intron 20.0%
!!! ATAAAGTAATTTTCATTGAC+AGG - chr4.4:9004960-9004979 None:intergenic 20.0%
!!! ATCAGATTTCTAATGATTTT+AGG + chr4.4:9005338-9005357 MS.gene28405:intron 20.0%
!!! TAAAGTAATTTTCATTGACA+GGG - chr4.4:9004959-9004978 None:intergenic 20.0%
! AAGGAATATATCAGAAACAT+GGG + chr4.4:9006313-9006332 MS.gene28405:CDS 25.0%
! AATGTTATGAACAAAGCATA+TGG - chr4.4:9004857-9004876 None:intergenic 25.0%
! CAAAAAATCGTGAAAATCAT+TGG - chr4.4:9005119-9005138 None:intergenic 25.0%
! CTAAACAAGGTTTAAATTTG+TGG - chr4.4:9005680-9005699 None:intergenic 25.0%
! TAACTAACTAAACATAGTTG+TGG - chr4.4:9004823-9004842 None:intergenic 25.0%
! TAATAGATTCATCAATCTCA+TGG - chr4.4:9005178-9005197 None:intergenic 25.0%
! TATAAAACAGATTGCAACAT+TGG - chr4.4:9004610-9004629 None:intergenic 25.0%
!! TATTACATTTTACATGTGCA+GGG + chr4.4:9005193-9005212 MS.gene28405:intron 25.0%
!!! AAGGTTTTTTTCTTTCTTTC+CGG - chr4.4:9005490-9005509 None:intergenic 25.0%
!!! ATGTTTCTATTGATAGTGTT+TGG + chr4.4:9005791-9005810 MS.gene28405:intron 25.0%
AACATAGTTGTGGAAAATAC+AGG - chr4.4:9004813-9004832 None:intergenic 30.0%
AACTTCAATGACTTCAAAAG+TGG + chr4.4:9005954-9005973 MS.gene28405:CDS 30.0%
ACTGTATCCAATTATAGAAG+AGG - chr4.4:9004918-9004937 None:intergenic 30.0%
ACTTTGACAAAGAAATCTTG+CGG + chr4.4:9005152-9005171 MS.gene28405:intron 30.0%
AGATTCCAAAATCTGCATAT+TGG + chr4.4:9005593-9005612 MS.gene28405:CDS 30.0%
AGGAATATATCAGAAACATG+GGG + chr4.4:9006314-9006333 MS.gene28405:CDS 30.0%
AGGTAAAGCAGAATAAAAAG+AGG + chr4.4:9004295-9004314 MS.gene28405:CDS 30.0%
CAAGAAATTAGAGCTCATAA+AGG + chr4.4:9004348-9004367 MS.gene28405:CDS 30.0%
CTGTATCCAATTATAGAAGA+GGG - chr4.4:9004917-9004936 None:intergenic 30.0%
GAAGGAATATATCAGAAACA+TGG + chr4.4:9006312-9006331 MS.gene28405:CDS 30.0%
GAGATTGTTCAGAAATACAA+AGG + chr4.4:9005624-9005643 MS.gene28405:CDS 30.0%
GCTATAAGTTATCAACAAGA+TGG + chr4.4:9005068-9005087 MS.gene28405:CDS 30.0%
GTAAAGCTAATAGGAAAAAC+TGG + chr4.4:9004184-9004203 MS.gene28405:CDS 30.0%
TAAAGCAGAATAAAAAGAGG+TGG + chr4.4:9004298-9004317 MS.gene28405:CDS 30.0%
TACCTGAAGCAACATAAAAA+CGG - chr4.4:9005249-9005268 None:intergenic 30.0%
TATTCGAACTTTACCATCAA+TGG - chr4.4:9004991-9005010 None:intergenic 30.0%
TCTTGTTGGAAGATCTTAAA+AGG + chr4.4:9004073-9004092 MS.gene28405:CDS 30.0%
TGATGGTAAAGTTCGAATAT+GGG + chr4.4:9004992-9005011 MS.gene28405:CDS 30.0%
TTTCTGATATATTCCTTCCA+TGG - chr4.4:9006310-9006329 None:intergenic 30.0%
! ATCAAGACATTCCACAATTT+TGG + chr4.4:9006371-9006390 MS.gene28405:CDS 30.0%
! CCTTGTTTAGAACTTTGTTT+AGG + chr4.4:9005690-9005709 MS.gene28405:intron 30.0%
! CTATTACATTTTACATGTGC+AGG + chr4.4:9005192-9005211 MS.gene28405:intron 30.0%
! TAACTTTTCTCACTATTCTC+TGG + chr4.4:9006088-9006107 MS.gene28405:CDS 30.0%
! TAATTCTCTGACAGTTGTTT+TGG - chr4.4:9005560-9005579 None:intergenic 30.0%
! TACAAAGGTACAACACTTAA+TGG + chr4.4:9005639-9005658 MS.gene28405:intron 30.0%
! TCGATAATGGTAAAGCTAAT+AGG + chr4.4:9004175-9004194 MS.gene28405:CDS 30.0%
! TGAGGCAAAAGAAGAATTTT+GGG + chr4.4:9004149-9004168 MS.gene28405:CDS 30.0%
! TTGATGGTAAAGTTCGAATA+TGG + chr4.4:9004991-9005010 MS.gene28405:CDS 30.0%
!! AACGATTTTCTCTTGGTAAT+TGG + chr4.4:9006156-9006175 MS.gene28405:CDS 30.0%
!! CCTAAACAAAGTTCTAAACA+AGG - chr4.4:9005693-9005712 None:intergenic 30.0%
!!! GAATTTTGGGATTTCGATAA+TGG + chr4.4:9004162-9004181 MS.gene28405:CDS 30.0%
ACATATCATTTCAGTTGGAG+AGG + chr4.4:9005911-9005930 MS.gene28405:CDS 35.0%
ACTATGAAATTCAGTCCCAA+TGG + chr4.4:9004381-9004400 MS.gene28405:CDS 35.0%
ACTTAATGGTTGTCACAATC+TGG + chr4.4:9005653-9005672 MS.gene28405:intron 35.0%
AGGAAAATATTTCCAGCTTG+AGG + chr4.4:9005358-9005377 MS.gene28405:intron 35.0%
ATCATTTGGAAGGGAAACAA+AGG - chr4.4:9004484-9004503 None:intergenic 35.0%
ATGTTCAATGTCTAAGAGCA+TGG - chr4.4:9004881-9004900 None:intergenic 35.0%
CTAATGCTTTCTTCTTTCCA+TGG - chr4.4:9005397-9005416 None:intergenic 35.0%
GAATAAAACTCGTAGAGTGA+AGG + chr4.4:9004275-9004294 MS.gene28405:CDS 35.0%
GAGCTCATAAAGGACTAATA+TGG + chr4.4:9004358-9004377 MS.gene28405:CDS 35.0%
GATGGTAAAGTTCGAATATG+GGG + chr4.4:9004993-9005012 MS.gene28405:CDS 35.0%
GGGAAACATATCATTTCAGT+TGG + chr4.4:9005906-9005925 MS.gene28405:CDS 35.0%
TCACATTCATCTTCTACAAG+AGG - chr4.4:9006257-9006276 None:intergenic 35.0%
TCATTTGGAAGGGAAACAAA+GGG - chr4.4:9004483-9004502 None:intergenic 35.0%
TGACCAAACAATTCTTGAAG+TGG - chr4.4:9004528-9004547 None:intergenic 35.0%
TGTTGGAAGATCTTAAAAGG+CGG + chr4.4:9004076-9004095 MS.gene28405:CDS 35.0%
TTCCAGTGATATCTTGGATT+TGG + chr4.4:9004548-9004567 MS.gene28405:CDS 35.0%
TTTATCAGTGGATCCATTGA+TGG + chr4.4:9004975-9004994 MS.gene28405:CDS 35.0%
! ATTTAGCTTACACTTCTTCC+AGG + chr4.4:9003881-9003900 MS.gene28405:CDS 35.0%
! GATACAGAACGATTTTCTCT+TGG + chr4.4:9006149-9006168 MS.gene28405:CDS 35.0%
! GGTAATTGGTTCTTCATTGA+TGG + chr4.4:9006170-9006189 MS.gene28405:CDS 35.0%
! GTGAGGCAAAAGAAGAATTT+TGG + chr4.4:9004148-9004167 MS.gene28405:CDS 35.0%
! TCGATCCAATATGCAGATTT+TGG - chr4.4:9005601-9005620 None:intergenic 35.0%
! TGAAGAACGAGTTATTGACT+GGG + chr4.4:9005022-9005041 MS.gene28405:CDS 35.0%
! TGTGAGTACTTTTCCTTCAA+GGG + chr4.4:9006008-9006027 MS.gene28405:CDS 35.0%
! TTATTGACTGGGCAGATATA+CGG + chr4.4:9005033-9005052 MS.gene28405:CDS 35.0%
! TTGTGAGTACTTTTCCTTCA+AGG + chr4.4:9006007-9006026 MS.gene28405:CDS 35.0%
! TTTAGCTTACACTTCTTCCA+GGG + chr4.4:9003882-9003901 MS.gene28405:CDS 35.0%
! TTTGTAGTTGGTTCTCTTAC+AGG + chr4.4:9005217-9005236 MS.gene28405:CDS 35.0%
!! AAACAACGAGTTTTGATGAC+TGG + chr4.4:9003920-9003939 MS.gene28405:CDS 35.0%
!! CATGGAAAGAAGAAAGCATT+AGG + chr4.4:9005395-9005414 MS.gene28405:CDS 35.0%
AATGCAAGCATTTCACCTTC+TGG + chr4.4:9003994-9004013 MS.gene28405:CDS 40.0%
AATGGTCAGTATTTGGCTAG+TGG + chr4.4:9004399-9004418 MS.gene28405:CDS 40.0%
ACAAGAGGTAAATCCCATGT+TGG - chr4.4:9006242-9006261 None:intergenic 40.0%
ACTAGCCAAATACTGACCAT+TGG - chr4.4:9004400-9004419 None:intergenic 40.0%
ACTCACATCTGAATTAGACC+AGG - chr4.4:9004574-9004593 None:intergenic 40.0%
ACTTACCAAAGCCTTTGTGA+GGG - chr4.4:9004767-9004786 None:intergenic 40.0%
ATTGCGCCCTCTTCTATAAT+TGG + chr4.4:9004908-9004927 MS.gene28405:intron 40.0%
CAACAAGATTACTGGCATTC+AGG + chr4.4:9005418-9005437 MS.gene28405:CDS 40.0%
CCCACTTGATGTAAATGAAC+CGG - chr4.4:9005889-9005908 None:intergenic 40.0%
CCGGTTCATTTACATCAAGT+GGG + chr4.4:9005886-9005905 MS.gene28405:CDS 40.0%
CTAGCCAAATACTGACCATT+GGG - chr4.4:9004399-9004418 None:intergenic 40.0%
CTCATGAATGTAGCAGCAAT+TGG - chr4.4:9005287-9005306 None:intergenic 40.0%
GAGGTTCTACTTCTATGACA+TGG + chr4.4:9006201-9006220 MS.gene28405:CDS 40.0%
GAGTTCAGTGAGGTATACAT+TGG + chr4.4:9004324-9004343 MS.gene28405:CDS 40.0%
GATTCTTCTTTCGTCTTCGA+TGG + chr4.4:9004689-9004708 MS.gene28405:intron 40.0%
GCAGAATAAAAAGAGGTGGA+TGG + chr4.4:9004302-9004321 MS.gene28405:CDS 40.0%
GCATTAGGCAACAAGATTAC+TGG + chr4.4:9005410-9005429 MS.gene28405:CDS 40.0%
GTGAAGAACGAGTTATTGAC+TGG + chr4.4:9005021-9005040 MS.gene28405:CDS 40.0%
TAACAGGCAAGCCAAAATTG+TGG - chr4.4:9006385-9006404 None:intergenic 40.0%
TACTTACCAAAGCCTTTGTG+AGG - chr4.4:9004768-9004787 None:intergenic 40.0%
TCCGGTTCATTTACATCAAG+TGG + chr4.4:9005885-9005904 MS.gene28405:CDS 40.0%
TCGCCACTTCAAGAATTGTT+TGG + chr4.4:9004522-9004541 MS.gene28405:CDS 40.0%
TGAGGAGAAACTTCCAACAT+GGG + chr4.4:9006226-9006245 MS.gene28405:CDS 40.0%
TGGAAGAACTGCAAACAACA+TGG - chr4.4:9005540-9005559 None:intergenic 40.0%
TGGTCATTCCAGTGATATCT+TGG + chr4.4:9004542-9004561 MS.gene28405:CDS 40.0%
TTCCCAGATACTTTACCAGA+AGG - chr4.4:9004012-9004031 None:intergenic 40.0%
TTGCTTCAGGTATGTACATG+TGG + chr4.4:9005257-9005276 MS.gene28405:intron 40.0%
TTTCTCTTGTGAACAAACCC+TGG - chr4.4:9003902-9003921 None:intergenic 40.0%
! CACCTTCTGGTAAAGTATCT+GGG + chr4.4:9004007-9004026 MS.gene28405:CDS 40.0%
! CGTTTTGTGAACATCAGGAA+AGG + chr4.4:9004213-9004232 MS.gene28405:CDS 40.0%
! CTAAGTGTTTTCCCTCACAA+AGG + chr4.4:9004753-9004772 MS.gene28405:CDS 40.0%
! GTCAGTTTTCTCGTTCTATC+AGG + chr4.4:9005837-9005856 MS.gene28405:intron 40.0%
! TATTGACTGGGCAGATATAC+GGG + chr4.4:9005034-9005053 MS.gene28405:CDS 40.0%
! TCACCTTCTGGTAAAGTATC+TGG + chr4.4:9004006-9004025 MS.gene28405:CDS 40.0%
! TGGTAAAGTATCTGGGAAGT+TGG + chr4.4:9004014-9004033 MS.gene28405:CDS 40.0%
! TTCATTGATGGTACATGTCG+AGG + chr4.4:9006182-9006201 MS.gene28405:CDS 40.0%
!! AACGAGTTTTGATGACTGGT+CGG + chr4.4:9003924-9003943 MS.gene28405:CDS 40.0%
!! TGAAGCGTTTTGTGAACATC+AGG + chr4.4:9004208-9004227 MS.gene28405:CDS 40.0%
!! TTCTGAAGCTGAAGTCTTGT+TGG + chr4.4:9004059-9004078 MS.gene28405:CDS 40.0%
!!! ACAATTTTGGCTTGCCTGTT+AGG + chr4.4:9006384-9006403 MS.gene28405:CDS 40.0%
!!! TGCCGTTTTTATGTTGCTTC+AGG + chr4.4:9005244-9005263 MS.gene28405:CDS 40.0%
AACATCAGGAAAGGCGACAA+AGG + chr4.4:9004222-9004241 MS.gene28405:CDS 45.0%
ACGAAGATAGTAGCCATGGA+AGG + chr4.4:9006294-9006313 MS.gene28405:CDS 45.0%
ACTGTTGCAATACCTTGGTG+TGG + chr4.4:9006035-9006054 MS.gene28405:CDS 45.0%
CAAGCTAGAGGTTACTTCTG+AGG + chr4.4:9006121-9006140 MS.gene28405:CDS 45.0%
CAGTCCCAATGGTCAGTATT+TGG + chr4.4:9004392-9004411 MS.gene28405:CDS 45.0%
CATGTGCAGGGATTTGTAGT+TGG + chr4.4:9005205-9005224 MS.gene28405:intron 45.0%
CATGTTGGAAGTTTCTCCTC+AGG - chr4.4:9006227-9006246 None:intergenic 45.0%
CTCAGAAGTAACCTCTAGCT+TGG - chr4.4:9006123-9006142 None:intergenic 45.0%
CTGAGGAGAAACTTCCAACA+TGG + chr4.4:9006225-9006244 MS.gene28405:CDS 45.0%
GAGGCGCAGATAAATATCCA+TGG + chr4.4:9005377-9005396 MS.gene28405:CDS 45.0%
GCGTAACTGTTGCAATACCT+TGG + chr4.4:9006030-9006049 MS.gene28405:CDS 45.0%
GGAAGCAAAAACCAAGCTAG+AGG + chr4.4:9006109-9006128 MS.gene28405:CDS 45.0%
GGCCAAATCCAAGATATCAC+TGG - chr4.4:9004553-9004572 None:intergenic 45.0%
GTGATATCTTGGATTTGGCC+TGG + chr4.4:9004553-9004572 MS.gene28405:CDS 45.0%
TACTTCTATGACATGGCCTG+AGG + chr4.4:9006208-9006227 MS.gene28405:CDS 45.0%
TATTTATCTGCGCCTCAAGC+TGG - chr4.4:9005373-9005392 None:intergenic 45.0%
TGGATAAAACTGTTCGCGCT+TGG + chr4.4:9004709-9004728 MS.gene28405:CDS 45.0%
TGTCACGAAGATAGTAGCCA+TGG + chr4.4:9006290-9006309 MS.gene28405:CDS 45.0%
TTTGGAAGGGAAACAAAGGG+AGG - chr4.4:9004480-9004499 None:intergenic 45.0%
! GTTTTCCCTCACAAAGGCTT+TGG + chr4.4:9004759-9004778 MS.gene28405:CDS 45.0%
! TCTGTTTTCATGCCACACCA+AGG - chr4.4:9006050-9006069 None:intergenic 45.0%
AAGATGGCGTTGTGCGCATA+TGG + chr4.4:9004427-9004446 MS.gene28405:CDS 50.0%
AGGACTCGCGCGTGTATATT+TGG + chr4.4:9005931-9005950 MS.gene28405:CDS 50.0%
ATAGTAGCAGCTGGCAGTGA+TGG + chr4.4:9006344-9006363 MS.gene28405:CDS 50.0%
GAAGGGAAACAAAGGGAGGA+CGG - chr4.4:9004476-9004495 None:intergenic 50.0%
GACATCTGACTTCCTGACCA+TGG - chr4.4:9005867-9005886 None:intergenic 50.0%
GGTCAGTATTTGGCTAGTGG+AGG + chr4.4:9004402-9004421 MS.gene28405:CDS 50.0%
GGTCTAACGATAGTAGCAGC+TGG + chr4.4:9006335-9006354 MS.gene28405:CDS 50.0%
TCGTTCTATCAGGCCTTCCA+TGG + chr4.4:9005847-9005866 MS.gene28405:intron 50.0%
TCTGACTTCCTGACCATGGA+AGG - chr4.4:9005863-9005882 None:intergenic 50.0%
TGCAACAGTTACGCCCTTGA+AGG - chr4.4:9006024-9006043 None:intergenic 50.0%
TGGTCAGGAAGTCAGATGTC+CGG + chr4.4:9005867-9005886 MS.gene28405:CDS 50.0%
TTGGCTAGTGGAGGTGAAGA+TGG + chr4.4:9004411-9004430 MS.gene28405:CDS 50.0%
! ATGACTGGTCGGTCACATTG+GGG + chr4.4:9003935-9003954 MS.gene28405:CDS 50.0%
! CAAGAGCACAGACAGAGAGA+AGG + chr4.4:9004126-9004145 MS.gene28405:CDS 50.0%
! GATGACTGGTCGGTCACATT+GGG + chr4.4:9003934-9003953 MS.gene28405:CDS 50.0%
! GGAAGTTGGTTCTCTCTGGA+TGG + chr4.4:9004028-9004047 MS.gene28405:CDS 50.0%
! TCTGGGAAGTTGGTTCTCTC+TGG + chr4.4:9004024-9004043 MS.gene28405:CDS 50.0%
! TGATGACTGGTCGGTCACAT+TGG + chr4.4:9003933-9003952 MS.gene28405:CDS 50.0%
AAGGCGGCGTGAGTATGAAG+TGG + chr4.4:9004092-9004111 MS.gene28405:CDS 55.0%
CTATCAGGCCTTCCATGGTC+AGG + chr4.4:9005852-9005871 MS.gene28405:intron 55.0%
GAGGTGGATGGAGTTCAGTG+AGG + chr4.4:9004314-9004333 MS.gene28405:CDS 55.0%
GCACAGACAGAGAGAAGGTG+AGG + chr4.4:9004131-9004150 MS.gene28405:CDS 55.0%
ATTGGGGTCGGAGAGGATCG+TGG + chr4.4:9003951-9003970 MS.gene28405:CDS 60.0%
CTGGTCGGTCACATTGGGGT+CGG + chr4.4:9003939-9003958 MS.gene28405:CDS 60.0%
GAGAGGATCGTGGCAAGCAG+TGG + chr4.4:9003961-9003980 MS.gene28405:CDS 60.0%
CGGTCACATTGGGGTCGGAG+AGG + chr4.4:9003944-9003963 MS.gene28405:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 9003877 9006412 9003877 ID=MS.gene28405
chr4.4 mRNA 9003877 9006412 9003877 ID=MS.gene28405.t1;Parent=MS.gene28405
chr4.4 exon 9003877 9004587 9003877 ID=MS.gene28405.t1.exon1;Parent=MS.gene28405.t1
chr4.4 CDS 9003877 9004587 9003877 ID=cds.MS.gene28405.t1;Parent=MS.gene28405.t1
chr4.4 exon 9004690 9004780 9004690 ID=MS.gene28405.t1.exon2;Parent=MS.gene28405.t1
chr4.4 CDS 9004690 9004780 9004690 ID=cds.MS.gene28405.t1;Parent=MS.gene28405.t1
chr4.4 exon 9004937 9005094 9004937 ID=MS.gene28405.t1.exon3;Parent=MS.gene28405.t1
chr4.4 CDS 9004937 9005094 9004937 ID=cds.MS.gene28405.t1;Parent=MS.gene28405.t1
chr4.4 exon 9005214 9005265 9005214 ID=MS.gene28405.t1.exon4;Parent=MS.gene28405.t1
chr4.4 CDS 9005214 9005265 9005214 ID=cds.MS.gene28405.t1;Parent=MS.gene28405.t1
chr4.4 exon 9005360 9005439 9005360 ID=MS.gene28405.t1.exon5;Parent=MS.gene28405.t1
chr4.4 CDS 9005360 9005439 9005360 ID=cds.MS.gene28405.t1;Parent=MS.gene28405.t1
chr4.4 exon 9005552 9005645 9005552 ID=MS.gene28405.t1.exon6;Parent=MS.gene28405.t1
chr4.4 CDS 9005552 9005645 9005552 ID=cds.MS.gene28405.t1;Parent=MS.gene28405.t1
chr4.4 exon 9005859 9006412 9005859 ID=MS.gene28405.t1.exon7;Parent=MS.gene28405.t1
chr4.4 CDS 9005859 9006412 9005859 ID=cds.MS.gene28405.t1;Parent=MS.gene28405.t1
Gene Sequence

>MS.gene28405

ATGGATTTAGCTTACACTTCTTCCAGGGTTTGTTCACAAGAGAAAACAACGAGTTTTGATGACTGGTCGGTCACATTGGGGTCGGAGAGGATCGTGGCAAGCAGTGGAGCAGTCTCAAATGCAAGCATTTCACCTTCTGGTAAAGTATCTGGGAAGTTGGTTCTCTCTGGATGGAATGCAGCTTCTGAAGCTGAAGTCTTGTTGGAAGATCTTAAAAGGCGGCGTGAGTATGAAGTGGACGCTAGTTTTCAAGAGCACAGACAGAGAGAAGGTGAGGCAAAAGAAGAATTTTGGGATTTCGATAATGGTAAAGCTAATAGGAAAAACTGGTTGAAGCGTTTTGTGAACATCAGGAAAGGCGACAAAGGAAATTTTAGATCAAAACTGAATGCAGCAACGAATAAAACTCGTAGAGTGAAGGTAAAGCAGAATAAAAAGAGGTGGATGGAGTTCAGTGAGGTATACATTGGACAAGAAATTAGAGCTCATAAAGGACTAATATGGACTATGAAATTCAGTCCCAATGGTCAGTATTTGGCTAGTGGAGGTGAAGATGGCGTTGTGCGCATATGGCGCGTTTTGTCACGTGACAAAAGCCGTCCTCCCTTTGTTTCCCTTCCAAATGATATTTTTCAAATTGAGGAATCGCCACTTCAAGAATTGTTTGGTCATTCCAGTGATATCTTGGATTTGGCCTGGTCTAATTCAGATGTGAGTTTAACTTGCAGAACCAATGTTGCAATCTGTTTTATATGTTTATTCTGCTTGCTAATCTGATATATTTTAAAGCTGATAAAAAAATACATGTTGCAGATTCTTCTTTCGTCTTCGATGGATAAAACTGTTCGCGCTTGGAAAATCAGTTGTGATCAATGTCTAAGTGTTTTCCCTCACAAAGGCTTTGGTAAGTATGAGAGAATCACGCTTTTTATACCTGTATTTTCCACAACTATGTTTAGTTAGTTAATAAATTTAGACCATATGCTTTGTTCATAACATTGCCATGCTCTTAGACATTGAACATGATCATAATTGCGCCCTCTTCTATAATTGGATACAGTGACATGCATTCAATTCAACCCTGTCAATGAAAATTACTTTATCAGTGGATCCATTGATGGTAAAGTTCGAATATGGGGAATACGTGAAGAACGAGTTATTGACTGGGCAGATATACGGGATGTCATAAGTGCTATAAGTTATCAACAAGATGGAAAAGTATGCTATCAATACTCATGACCAATGATTTTCACGATTTTTTGCGTCTTTATGCATACTTTGACAAAGAAATCTTGCGGCCATGAGATTGATGAATCTATTACATTTTACATGTGCAGGGATTTGTAGTTGGTTCTCTTACAGGCACATGCCGTTTTTATGTTGCTTCAGGTATGTACATGTGGATCACCAATTGCTGCTACATTCATGAGTTTTCTTTACCGAAGATAAATTAGTTTCTAAATCAGATTTCTAATGATTTTAGGAAAATATTTCCAGCTTGAGGCGCAGATAAATATCCATGGAAAGAAGAAAGCATTAGGCAACAAGATTACTGGCATTCAGGTTAGAATCTAGAAATTCTTTACTATCAAAGCATTTTAATTTGTATTCCGGAAAGAAAGAAAAAAACCTTATTTTGTACTTCAATTATTTATCACATCCATGTTGTTTGCAGTTCTTCCAAAACAACTGTCAGAGAATTATGATCACATCTGAAGATTCCAAAATCTGCATATTGGATCGAACTGAGATTGTTCAGAAATACAAAGGTACAACACTTAATGGTTGTCACAATCTGGACCACAAATTTAAACCTTGTTTAGAACTTTGTTTAGGTATTTTATATGCATTGTATGATAAATTATCAAATCTTAAACATAATGTGTATTCACTGACACATTGATAAATTTTAGAATGTTTCTATTGATAGTGTTTGGTTTGCAAGAAAAACTCTAAGTCTGTCAGTTTTCTCGTTCTATCAGGCCTTCCATGGTCAGGAAGTCAGATGTCCGGTTCATTTACATCAAGTGGGAAACATATCATTTCAGTTGGAGAGGACTCGCGCGTGTATATTTGGAACTTCAATGACTTCAAAAGTGGTTCTTCGAAAAAAATGAAATCGGACTATTCTTGTGAGTACTTTTCCTTCAAGGGCGTAACTGTTGCAATACCTTGGTGTGGCATGAAAACAGATAGACGTGACTGTAGAATTAACTTTTCTCACTATTCTCTGGAAGCAAAAACCAAGCTAGAGGTTACTTCTGAGGTTAGAGATACAGAACGATTTTCTCTTGGTAATTGGTTCTTCATTGATGGTACATGTCGAGGTTCTACTTCTATGACATGGCCTGAGGAGAAACTTCCAACATGGGATTTACCTCTTGTAGAAGATGAATGTGATCATCAAAATTCATGTCACGAAGATAGTAGCCATGGAAGGAATATATCAGAAACATGGGGTCTAACGATAGTAGCAGCTGGCAGTGATGGAACTATCAAGACATTCCACAATTTTGGCTTGCCTGTTAGGCTTTAG

Protein sequence

>MS.gene28405.t1

MDLAYTSSRVCSQEKTTSFDDWSVTLGSERIVASSGAVSNASISPSGKVSGKLVLSGWNAASEAEVLLEDLKRRREYEVDASFQEHRQREGEAKEEFWDFDNGKANRKNWLKRFVNIRKGDKGNFRSKLNAATNKTRRVKVKQNKKRWMEFSEVYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWRVLSRDKSRPPFVSLPNDIFQIEESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVRAWKISCDQCLSVFPHKGFVTCIQFNPVNENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSLTGTCRFYVASGKYFQLEAQINIHGKKKALGNKITGIQFFQNNCQRIMITSEDSKICILDRTEIVQKYKGLPWSGSQMSGSFTSSGKHIISVGEDSRVYIWNFNDFKSGSSKKMKSDYSCEYFSFKGVTVAIPWCGMKTDRRDCRINFSHYSLEAKTKLEVTSEVRDTERFSLGNWFFIDGTCRGSTSMTWPEEKLPTWDLPLVEDECDHQNSCHEDSSHGRNISETWGLTIVAAGSDGTIKTFHNFGLPVRL