Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28508.t1 | AET01168.2 | 68.4 | 152 | 10 | 1 | 1 | 114 | 102 | 253 | 4.80E-41 | 177.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28508.t1 | G8A0U6 | 37.4 | 270 | 98 | 1 | 3 | 201 | 104 | 373 | 3.4e-41 | 177.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054174 | MS.gene28508 | 0.80954 | 1.80E-50 | -1.69E-46 |
| MS.gene054175 | MS.gene28508 | 0.802419 | 5.66E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene28508 | 0.809857 | 1.54E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene28508 | 0.80367 | 3.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28508.t1 | MTR_8g005940 | 68.421 | 152 | 10 | 1 | 1 | 114 | 102 | 253 | 4.42e-60 | 190 |
| MS.gene28508.t1 | MTR_3g068135 | 61.194 | 134 | 43 | 1 | 38 | 171 | 6 | 130 | 1.50e-51 | 165 |
| MS.gene28508.t1 | MTR_3g036220 | 63.971 | 136 | 9 | 1 | 19 | 114 | 75 | 210 | 2.27e-46 | 154 |
| MS.gene28508.t1 | MTR_4g060433 | 62.609 | 115 | 43 | 0 | 85 | 199 | 1 | 115 | 1.35e-45 | 150 |
| MS.gene28508.t1 | MTR_8g104590 | 65.347 | 101 | 32 | 1 | 102 | 202 | 7 | 104 | 3.00e-44 | 146 |
| MS.gene28508.t1 | MTR_1g105785 | 51.493 | 134 | 65 | 0 | 70 | 203 | 242 | 375 | 2.01e-43 | 153 |
| MS.gene28508.t1 | MTR_1g105785 | 44.444 | 72 | 40 | 0 | 1 | 72 | 102 | 173 | 6.64e-15 | 73.2 |
| MS.gene28508.t1 | MTR_8g446640 | 97.143 | 70 | 2 | 0 | 1 | 70 | 83 | 152 | 2.91e-41 | 142 |
| MS.gene28508.t1 | MTR_8g446640 | 78.571 | 56 | 12 | 0 | 59 | 114 | 212 | 267 | 9.47e-19 | 82.8 |
| MS.gene28508.t1 | MTR_7g024060 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.28e-41 | 142 |
| MS.gene28508.t1 | MTR_7g024060 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.58e-19 | 83.2 |
| MS.gene28508.t1 | MTR_6g087820 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.28e-41 | 142 |
| MS.gene28508.t1 | MTR_6g087820 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.58e-19 | 83.2 |
| MS.gene28508.t1 | MTR_5g081190 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.28e-41 | 142 |
| MS.gene28508.t1 | MTR_5g081190 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.58e-19 | 83.2 |
| MS.gene28508.t1 | MTR_5g091480 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.28e-41 | 142 |
| MS.gene28508.t1 | MTR_5g091480 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.58e-19 | 83.2 |
| MS.gene28508.t1 | MTR_5g056290 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.28e-41 | 142 |
| MS.gene28508.t1 | MTR_5g056290 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.58e-19 | 83.2 |
| MS.gene28508.t1 | MTR_3g031190 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.28e-41 | 142 |
| MS.gene28508.t1 | MTR_3g031190 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.58e-19 | 83.2 |
| MS.gene28508.t1 | MTR_2g005490 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.28e-41 | 142 |
| MS.gene28508.t1 | MTR_2g005490 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.58e-19 | 83.2 |
| MS.gene28508.t1 | MTR_2g010570 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.28e-41 | 142 |
| MS.gene28508.t1 | MTR_2g010570 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.58e-19 | 83.2 |
| MS.gene28508.t1 | MTR_5g030110 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.46e-41 | 142 |
| MS.gene28508.t1 | MTR_5g030110 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.76e-19 | 83.2 |
| MS.gene28508.t1 | MTR_2g007410 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.46e-41 | 142 |
| MS.gene28508.t1 | MTR_2g007410 | 78.571 | 56 | 12 | 0 | 59 | 114 | 231 | 286 | 8.76e-19 | 83.2 |
| MS.gene28508.t1 | MTR_1g023370 | 97.143 | 70 | 2 | 0 | 1 | 70 | 102 | 171 | 3.73e-41 | 142 |
| MS.gene28508.t1 | MTR_7g074180 | 95.714 | 70 | 3 | 0 | 1 | 70 | 102 | 171 | 1.19e-40 | 141 |
| MS.gene28508.t1 | MTR_7g074180 | 67.857 | 56 | 18 | 0 | 59 | 114 | 231 | 286 | 1.37e-14 | 71.6 |
| MS.gene28508.t1 | MTR_0105s0080 | 94.286 | 70 | 4 | 0 | 1 | 70 | 58 | 127 | 6.41e-40 | 137 |
| MS.gene28508.t1 | MTR_3g015660 | 94.286 | 70 | 4 | 0 | 1 | 70 | 102 | 171 | 8.33e-40 | 136 |
| MS.gene28508.t1 | MTR_5g045850 | 92.857 | 70 | 5 | 0 | 1 | 70 | 87 | 156 | 3.23e-39 | 136 |
| MS.gene28508.t1 | MTR_7g451880 | 92.857 | 70 | 5 | 0 | 1 | 70 | 103 | 172 | 1.36e-38 | 135 |
| MS.gene28508.t1 | MTR_7g451880 | 75.000 | 56 | 14 | 0 | 59 | 114 | 232 | 287 | 1.27e-17 | 80.1 |
| MS.gene28508.t1 | MTR_2g010270 | 84.810 | 79 | 3 | 1 | 1 | 70 | 83 | 161 | 4.34e-38 | 134 |
| MS.gene28508.t1 | MTR_2g010270 | 78.571 | 56 | 12 | 0 | 59 | 114 | 221 | 276 | 3.21e-19 | 84.3 |
| MS.gene28508.t1 | MTR_7g051400 | 46.269 | 134 | 72 | 0 | 70 | 203 | 220 | 353 | 7.18e-38 | 137 |
| MS.gene28508.t1 | MTR_3g046650 | 44.444 | 135 | 75 | 0 | 35 | 169 | 42 | 176 | 1.22e-37 | 131 |
| MS.gene28508.t1 | MTR_4g032565 | 51.327 | 113 | 55 | 0 | 93 | 205 | 9 | 121 | 1.67e-37 | 132 |
| MS.gene28508.t1 | MTR_4g058660 | 91.429 | 70 | 6 | 0 | 1 | 70 | 102 | 171 | 3.11e-37 | 132 |
| MS.gene28508.t1 | MTR_4g058660 | 75.000 | 56 | 14 | 0 | 59 | 114 | 231 | 286 | 1.01e-17 | 80.1 |
| MS.gene28508.t1 | MTR_4g032585 | 50.442 | 113 | 56 | 0 | 93 | 205 | 9 | 121 | 1.09e-36 | 129 |
| MS.gene28508.t1 | MTR_5g071020 | 62.609 | 115 | 24 | 3 | 19 | 114 | 75 | 189 | 6.77e-36 | 126 |
| MS.gene28508.t1 | MTR_7g110100 | 43.382 | 136 | 77 | 0 | 70 | 205 | 242 | 377 | 2.16e-35 | 130 |
| MS.gene28508.t1 | MTR_7g110100 | 50.746 | 67 | 33 | 0 | 4 | 70 | 105 | 171 | 1.85e-12 | 65.9 |
| MS.gene28508.t1 | MTR_1g011490 | 81.429 | 70 | 4 | 1 | 1 | 70 | 102 | 162 | 3.42e-31 | 116 |
| MS.gene28508.t1 | MTR_1g011490 | 78.571 | 56 | 12 | 0 | 59 | 114 | 222 | 277 | 2.08e-19 | 84.7 |
| MS.gene28508.t1 | MTR_1g082860 | 81.429 | 70 | 4 | 1 | 1 | 70 | 102 | 162 | 5.87e-31 | 114 |
| MS.gene28508.t1 | MTR_1g110330 | 57.018 | 114 | 26 | 4 | 1 | 114 | 80 | 170 | 1.57e-29 | 109 |
| MS.gene28508.t1 | MTR_2g435900 | 92.308 | 52 | 4 | 0 | 19 | 70 | 22 | 73 | 1.03e-26 | 99.0 |
| MS.gene28508.t1 | MTR_3g449160 | 90.385 | 52 | 5 | 0 | 19 | 70 | 22 | 73 | 3.03e-26 | 97.8 |
| MS.gene28508.t1 | MTR_0048s0080 | 40.909 | 132 | 66 | 2 | 70 | 201 | 108 | 227 | 9.37e-26 | 102 |
| MS.gene28508.t1 | MTR_5g012180 | 90.385 | 52 | 5 | 0 | 19 | 70 | 75 | 126 | 1.17e-25 | 100 |
| MS.gene28508.t1 | MTR_1g492690 | 45.000 | 120 | 56 | 1 | 82 | 201 | 57 | 166 | 1.20e-24 | 99.8 |
| MS.gene28508.t1 | MTR_7g045450 | 60.000 | 70 | 28 | 0 | 1 | 70 | 102 | 171 | 4.12e-19 | 83.2 |
| MS.gene28508.t1 | MTR_6g073570 | 60.000 | 70 | 28 | 0 | 1 | 70 | 102 | 171 | 4.12e-19 | 83.2 |
| MS.gene28508.t1 | MTR_5g019960 | 56.338 | 71 | 30 | 1 | 1 | 70 | 108 | 178 | 4.03e-17 | 77.4 |
| MS.gene28508.t1 | MTR_3g452170 | 35.714 | 98 | 63 | 0 | 70 | 167 | 242 | 339 | 2.18e-16 | 77.0 |
| MS.gene28508.t1 | MTR_3g452170 | 50.746 | 67 | 33 | 0 | 4 | 70 | 105 | 171 | 7.71e-13 | 67.0 |
| MS.gene28508.t1 | MTR_3g007260 | 65.385 | 52 | 18 | 0 | 19 | 70 | 80 | 131 | 8.58e-16 | 72.4 |
| MS.gene28508.t1 | MTR_8g465040 | 52.308 | 65 | 31 | 0 | 6 | 70 | 107 | 171 | 2.70e-14 | 68.2 |
| MS.gene28508.t1 | MTR_1g062890 | 24.873 | 197 | 135 | 5 | 11 | 199 | 130 | 321 | 6.25e-14 | 70.1 |
| MS.gene28508.t1 | MTR_6g465570 | 54.386 | 57 | 26 | 0 | 14 | 70 | 111 | 167 | 8.22e-14 | 67.0 |
| MS.gene28508.t1 | MTR_5g057125 | 37.984 | 129 | 66 | 2 | 70 | 198 | 39 | 153 | 3.69e-13 | 67.0 |
| MS.gene28508.t1 | MTR_2g048560 | 32.231 | 121 | 80 | 2 | 82 | 200 | 253 | 373 | 6.57e-13 | 67.0 |
| MS.gene28508.t1 | MTR_4g011200 | 79.412 | 34 | 7 | 0 | 113 | 146 | 49 | 82 | 2.30e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACATTACGCCCAATAAAC+TGG | 0.284869 | 8.4:+28118953 | None:intergenic |
| CGCCAGGTGACCCAGTTTAT+TGG | 0.287098 | 8.4:-28118964 | MS.gene28508:CDS |
| TAATTGAAAGAGGTGATATA+AGG | 0.328150 | 8.4:-28120310 | MS.gene28508:CDS |
| TACGTAATTTCAGATGTTAT+TGG | 0.335367 | 8.4:-28120338 | MS.gene28508:intron |
| ACTATATGTGAGATCGAAAC+TGG | 0.342217 | 8.4:-28119234 | MS.gene28508:CDS |
| GGTTATTGATCTCACTTTAG+AGG | 0.347534 | 8.4:-28120258 | MS.gene28508:CDS |
| TGAAATCTGGCTAACACTTC+GGG | 0.348721 | 8.4:+28119461 | None:intergenic |
| GCCAGGTGACCCAGTTTATT+GGG | 0.358263 | 8.4:-28118963 | MS.gene28508:CDS |
| ATGCACCCAGTGTGCTTCAT+TGG | 0.403027 | 8.4:-28119190 | MS.gene28508:CDS |
| CGGAGCTGTTCGTTGAAATC+TGG | 0.418086 | 8.4:+28119448 | None:intergenic |
| GAAGAGAGAATTTCATTGAA+TGG | 0.432380 | 8.4:+28120491 | None:intergenic |
| TCATGCTTTCAATTGTCATT+CGG | 0.442768 | 8.4:+28119394 | None:intergenic |
| TTGAAATCTGGCTAACACTT+CGG | 0.453680 | 8.4:+28119460 | None:intergenic |
| AACTGTCGAGGAAGTGTCTA+CGG | 0.454569 | 8.4:-28120468 | MS.gene28508:CDS |
| TTTACAGATCTGTCAAGGTT+CGG | 0.485784 | 8.4:-28119265 | MS.gene28508:intron |
| AATTGAAAGAGGTGATATAA+GGG | 0.489125 | 8.4:-28120309 | MS.gene28508:CDS |
| AAAAGGATGGAAGGAAAGGC+AGG | 0.495962 | 8.4:-28120280 | MS.gene28508:CDS |
| GCTTTCAATTGTCATTCGGT+TGG | 0.496345 | 8.4:+28119398 | None:intergenic |
| GCCCAATAAACTGGGTCACC+TGG | 0.499906 | 8.4:+28118962 | None:intergenic |
| CACATTACGCCCAATAAACT+GGG | 0.508234 | 8.4:+28118954 | None:intergenic |
| AGATCGAAACTGGGGTTGAT+TGG | 0.522728 | 8.4:-28119224 | MS.gene28508:CDS |
| TGATATAAGGGAAACTGAAA+AGG | 0.524272 | 8.4:-28120297 | MS.gene28508:CDS |
| TAAGCTGCATTTCATCGTGA+TGG | 0.527767 | 8.4:-28119022 | MS.gene28508:CDS |
| GATAGCAGGCAAGTGTACTT+TGG | 0.527816 | 8.4:+28120538 | None:intergenic |
| AGTTTCGATCTCACATATAG+TGG | 0.527956 | 8.4:+28119236 | None:intergenic |
| ATAAGGGAAACTGAAAAGGA+TGG | 0.532230 | 8.4:-28120293 | MS.gene28508:CDS |
| ATTGGTCATGTAATTGAAAG+AGG | 0.535259 | 8.4:-28120320 | MS.gene28508:CDS |
| AAAACGTTCATAGGGATAGC+AGG | 0.542724 | 8.4:+28120524 | None:intergenic |
| ATTTGTGAGCAGGGAGCAGT+AGG | 0.545415 | 8.4:-28118819 | None:intergenic |
| CGCAAGTGTAAAACTTGCAA+GGG | 0.557114 | 8.4:-28119138 | MS.gene28508:CDS |
| TCATTGGCCACCGTTGACAA+TGG | 0.563947 | 8.4:-28119174 | MS.gene28508:CDS |
| TCGCAAGTGTAAAACTTGCA+AGG | 0.564821 | 8.4:-28119139 | MS.gene28508:CDS |
| CTATATGTGAGATCGAAACT+GGG | 0.565040 | 8.4:-28119233 | MS.gene28508:CDS |
| ACTGTCGAGGAAGTGTCTAC+GGG | 0.577481 | 8.4:-28120467 | MS.gene28508:intron |
| GGGAAACTGAAAAGGATGGA+AGG | 0.581802 | 8.4:-28120289 | MS.gene28508:CDS |
| CGGTGGCCAATGAAGCACAC+TGG | 0.591152 | 8.4:+28119184 | None:intergenic |
| ACTGAAAAGGATGGAAGGAA+AGG | 0.591307 | 8.4:-28120284 | MS.gene28508:CDS |
| GGTGGCCAATGAAGCACACT+GGG | 0.596461 | 8.4:+28119185 | None:intergenic |
| AATTCTCTCTTCAACTGTCG+AGG | 0.602150 | 8.4:-28120480 | MS.gene28508:CDS |
| CTTGCAAGGGTGCAGTCCCA+AGG | 0.605354 | 8.4:-28119125 | MS.gene28508:intron |
| TTCATCGTGATGGACGACAC+AGG | 0.609546 | 8.4:-28119012 | MS.gene28508:CDS |
| AAATATTTACAGATCTGTCA+AGG | 0.616151 | 8.4:-28119270 | MS.gene28508:intron |
| CTTGATCAATGAACGTGATG+AGG | 0.616661 | 8.4:-28118926 | MS.gene28508:CDS |
| TCATCGTGATGGACGACACA+GGG | 0.635192 | 8.4:-28119011 | MS.gene28508:CDS |
| ACGGAGCACTCCATTGTCAA+CGG | 0.655947 | 8.4:+28119164 | None:intergenic |
| AAAGGATGGAAGGAAAGGCA+GGG | 0.674055 | 8.4:-28120279 | MS.gene28508:CDS |
| CAAGTCATCTGATAAAGACG+CGG | 0.674931 | 8.4:+28119428 | None:intergenic |
| GAGCACTCCATTGTCAACGG+TGG | 0.720804 | 8.4:+28119167 | None:intergenic |
| TATATGTGAGATCGAAACTG+GGG | 0.729438 | 8.4:-28119232 | MS.gene28508:CDS |
| AAGCATGATTGAGTCAACTG+AGG | 0.787148 | 8.4:-28119379 | MS.gene28508:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATATAAAAATGTAAA+TGG | + | chr8.4:28119554-28119573 | None:intergenic | 10.0% |
| !!! | TTTTATATGTTATAGAATAA+AGG | - | chr8.4:28119561-28119580 | MS.gene28508:intron | 10.0% |
| !! | ATTGTCCAATTATTATTAAT+AGG | - | chr8.4:28119784-28119803 | MS.gene28508:intron | 15.0% |
| !! | TATATAATTGTATAAATGTG+TGG | - | chr8.4:28120485-28120504 | MS.gene28508:CDS | 15.0% |
| !! | TGTAACCTATTAATAATAAT+TGG | + | chr8.4:28119792-28119811 | None:intergenic | 15.0% |
| !!! | CATTTTTCATTCTAATAAAA+GGG | + | chr8.4:28119881-28119900 | None:intergenic | 15.0% |
| !!! | GAAATTTTTAGATGTATTTT+TGG | - | chr8.4:28120037-28120056 | MS.gene28508:intron | 15.0% |
| !!! | TGTTGAATTTTTGAAAAATT+AGG | - | chr8.4:28119440-28119459 | MS.gene28508:CDS | 15.0% |
| !! | AAAATGTATGAAATTCGTAA+AGG | + | chr8.4:28118997-28119016 | None:intergenic | 20.0% |
| !! | GATATAGTTGATTATTTGAT+AGG | - | chr8.4:28120330-28120349 | MS.gene28508:intron | 20.0% |
| !! | TATTACCAAAATATCAATTC+AGG | + | chr8.4:28119214-28119233 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTTTATCATGTG+TGG | - | chr8.4:28120298-28120317 | MS.gene28508:CDS | 20.0% |
| !!! | GCATTTTTCATTCTAATAAA+AGG | + | chr8.4:28119882-28119901 | None:intergenic | 20.0% |
| !!! | GTTCAATATTTTTATGCAAA+AGG | - | chr8.4:28120079-28120098 | MS.gene28508:intron | 20.0% |
| ! | AAATATTTACAGATCTGTCA+AGG | - | chr8.4:28120107-28120126 | MS.gene28508:intron | 25.0% |
| ! | AACTGCAATATCAATATAGT+AGG | + | chr8.4:28119328-28119347 | None:intergenic | 25.0% |
| ! | AATATCAATTCAGGAACATA+AGG | + | chr8.4:28119205-28119224 | None:intergenic | 25.0% |
| ! | AATTGAAAGAGGTGATATAA+GGG | - | chr8.4:28119068-28119087 | MS.gene28508:intron | 25.0% |
| ! | ATCAAAAAGAACAAAAGTAG+TGG | + | chr8.4:28120393-28120412 | None:intergenic | 25.0% |
| ! | TAATTGAAAGAGGTGATATA+AGG | - | chr8.4:28119067-28119086 | MS.gene28508:intron | 25.0% |
| ! | TACGTAATTTCAGATGTTAT+TGG | - | chr8.4:28119039-28119058 | MS.gene28508:intron | 25.0% |
| !! | ACATTTTATTATTTGTGAGC+AGG | - | chr8.4:28120548-28120567 | MS.gene28508:CDS | 25.0% |
| !! | ATGTTAGTACAAATTTTCGT+CGG | + | chr8.4:28120532-28120551 | None:intergenic | 25.0% |
| !! | ATGTTCCTGAATTGATATTT+TGG | - | chr8.4:28119206-28119225 | MS.gene28508:CDS | 25.0% |
| !! | ATTGTTAGTGGATATCATTA+GGG | + | chr8.4:28119660-28119679 | None:intergenic | 25.0% |
| !! | CATTTTATTATTTGTGAGCA+GGG | - | chr8.4:28120549-28120568 | MS.gene28508:CDS | 25.0% |
| !! | TATTGTTAGTGGATATCATT+AGG | + | chr8.4:28119661-28119680 | None:intergenic | 25.0% |
| !! | TTTGAAAAATTAGGTGCTAT+GGG | - | chr8.4:28119449-28119468 | MS.gene28508:CDS | 25.0% |
| !!! | AGAATAAAGGCAAGTTTTTT+TGG | - | chr8.4:28119574-28119593 | MS.gene28508:intron | 25.0% |
| !!! | TTTTGAAAAATTAGGTGCTA+TGG | - | chr8.4:28119448-28119467 | MS.gene28508:CDS | 25.0% |
| AAATGTGTGGTCTATATATG+AGG | - | chr8.4:28120498-28120517 | MS.gene28508:CDS | 30.0% | |
| ATATCAATATAGTAGGTGTG+TGG | + | chr8.4:28119321-28119340 | None:intergenic | 30.0% | |
| ATTCGTAAAGGAATGCTTAT+AGG | + | chr8.4:28118985-28119004 | None:intergenic | 30.0% | |
| ATTGGTCATGTAATTGAAAG+AGG | - | chr8.4:28119057-28119076 | MS.gene28508:intron | 30.0% | |
| CATCAGAAAACTATTGTTAG+TGG | + | chr8.4:28119672-28119691 | None:intergenic | 30.0% | |
| CTATATTGATATTGCAGTTC+TGG | - | chr8.4:28119329-28119348 | MS.gene28508:intron | 30.0% | |
| GAAGAGAGAATTTCATTGAA+TGG | + | chr8.4:28118889-28118908 | None:intergenic | 30.0% | |
| TATCAACTTAGTCCCATTAA+AGG | + | chr8.4:28119486-28119505 | None:intergenic | 30.0% | |
| TCATGCTTTCAATTGTCATT+CGG | + | chr8.4:28119986-28120005 | None:intergenic | 30.0% | |
| TGAACTCAAAAACGTTCATA+GGG | + | chr8.4:28118864-28118883 | None:intergenic | 30.0% | |
| TGATATAAGGGAAACTGAAA+AGG | - | chr8.4:28119080-28119099 | MS.gene28508:intron | 30.0% | |
| TTGAACTCAAAAACGTTCAT+AGG | + | chr8.4:28118865-28118884 | None:intergenic | 30.0% | |
| ! | CACTAACAATAGTTTTCTGA+TGG | - | chr8.4:28119670-28119689 | MS.gene28508:intron | 30.0% |
| ! | GGATAAACTTTGTTTACCTT+GGG | + | chr8.4:28120271-28120290 | None:intergenic | 30.0% |
| !!! | CTGACAAAATTGTCCTTTTT+TGG | - | chr8.4:28119283-28119302 | MS.gene28508:intron | 30.0% |
| AATAAGCTACCCATAAACGA+TGG | + | chr8.4:28119627-28119646 | None:intergenic | 35.0% | |
| ACTATATGTGAGATCGAAAC+TGG | - | chr8.4:28120143-28120162 | MS.gene28508:intron | 35.0% | |
| AGTTTCGATCTCACATATAG+TGG | + | chr8.4:28120144-28120163 | None:intergenic | 35.0% | |
| ATAAGCTACCCATAAACGAT+GGG | + | chr8.4:28119626-28119645 | None:intergenic | 35.0% | |
| ATAAGGGAAACTGAAAAGGA+TGG | - | chr8.4:28119084-28119103 | MS.gene28508:intron | 35.0% | |
| CTATATGTGAGATCGAAACT+GGG | - | chr8.4:28120144-28120163 | MS.gene28508:intron | 35.0% | |
| GAGTTGCTAATGCCTTTAAT+GGG | - | chr8.4:28119471-28119490 | MS.gene28508:CDS | 35.0% | |
| GGTTATTGATCTCACTTTAG+AGG | - | chr8.4:28119119-28119138 | MS.gene28508:intron | 35.0% | |
| TATATGTGAGATCGAAACTG+GGG | - | chr8.4:28120145-28120164 | MS.gene28508:intron | 35.0% | |
| TCGTTTATGGGTAGCTTATT+TGG | - | chr8.4:28119627-28119646 | MS.gene28508:intron | 35.0% | |
| TTGAAATCTGGCTAACACTT+CGG | + | chr8.4:28119920-28119939 | None:intergenic | 35.0% | |
| TTTACAGATCTGTCAAGGTT+CGG | - | chr8.4:28120112-28120131 | MS.gene28508:intron | 35.0% | |
| ! | AAGTTTTACACTTGCGACAA+CGG | + | chr8.4:28120235-28120254 | None:intergenic | 35.0% |
| ! | CGGATAAACTTTGTTTACCT+TGG | + | chr8.4:28120272-28120291 | None:intergenic | 35.0% |
| ! | GTCGTAATTAAGTTGTCTAG+AGG | - | chr8.4:28119596-28119615 | MS.gene28508:intron | 35.0% |
| ! | TTTGTCTGTTTCTTTGTAGC+TGG | - | chr8.4:28119155-28119174 | MS.gene28508:CDS | 35.0% |
| ! | TTTTGTTCTTTTTGATCGCC+AGG | - | chr8.4:28120397-28120416 | MS.gene28508:intron | 35.0% |
| AAAACGTTCATAGGGATAGC+AGG | + | chr8.4:28118856-28118875 | None:intergenic | 40.0% | |
| AAGCATGATTGAGTCAACTG+AGG | - | chr8.4:28119998-28120017 | MS.gene28508:intron | 40.0% | |
| AATTCTCTCTTCAACTGTCG+AGG | - | chr8.4:28118897-28118916 | MS.gene28508:intron | 40.0% | |
| ACCATTTGCATTGCTCTCTT+TGG | - | chr8.4:28119250-28119269 | MS.gene28508:CDS | 40.0% | |
| ACTGAAAAGGATGGAAGGAA+AGG | - | chr8.4:28119093-28119112 | MS.gene28508:intron | 40.0% | |
| AGAAGATGTGCACACAGAAA+AGG | - | chr8.4:28119726-28119745 | MS.gene28508:intron | 40.0% | |
| AGACTCAAGTAGCAAGGTAA+GGG | + | chr8.4:28119833-28119852 | None:intergenic | 40.0% | |
| CAAGTCATCTGATAAAGACG+CGG | + | chr8.4:28119952-28119971 | None:intergenic | 40.0% | |
| CACATTACGCCCAATAAACT+GGG | + | chr8.4:28120426-28120445 | None:intergenic | 40.0% | |
| CATTTGCATTGCTCTCTTTG+GGG | - | chr8.4:28119252-28119271 | MS.gene28508:CDS | 40.0% | |
| CCATTTGCATTGCTCTCTTT+GGG | - | chr8.4:28119251-28119270 | MS.gene28508:CDS | 40.0% | |
| CGCAAGTGTAAAACTTGCAA+GGG | - | chr8.4:28120239-28120258 | MS.gene28508:intron | 40.0% | |
| CGCTACTCTTCTATTGACAT+TGG | - | chr8.4:28119853-28119872 | MS.gene28508:intron | 40.0% | |
| CTTGATCAATGAACGTGATG+AGG | - | chr8.4:28120451-28120470 | MS.gene28508:intron | 40.0% | |
| GAAGATGTGCACACAGAAAA+GGG | - | chr8.4:28119727-28119746 | MS.gene28508:intron | 40.0% | |
| GCTTTCAATTGTCATTCGGT+TGG | + | chr8.4:28119982-28120001 | None:intergenic | 40.0% | |
| GGAGTTGCTAATGCCTTTAA+TGG | - | chr8.4:28119470-28119489 | MS.gene28508:CDS | 40.0% | |
| GTTGTCATGGTTGCCAAAAA+AGG | + | chr8.4:28119299-28119318 | None:intergenic | 40.0% | |
| TAAGCTGCATTTCATCGTGA+TGG | - | chr8.4:28120355-28120374 | MS.gene28508:intron | 40.0% | |
| TCGCAAGTGTAAAACTTGCA+AGG | - | chr8.4:28120238-28120257 | MS.gene28508:intron | 40.0% | |
| TGAAATCTGGCTAACACTTC+GGG | + | chr8.4:28119919-28119938 | None:intergenic | 40.0% | |
| TGGAAGACACGCATGTATTT+AGG | - | chr8.4:28119349-28119368 | MS.gene28508:intron | 40.0% | |
| AAAAGGATGGAAGGAAAGGC+AGG | - | chr8.4:28119097-28119116 | MS.gene28508:intron | 45.0% | |
| AAAGGATGGAAGGAAAGGCA+GGG | - | chr8.4:28119098-28119117 | MS.gene28508:intron | 45.0% | |
| CATGATTGAGTCAACTGAGG+TGG | - | chr8.4:28120001-28120020 | MS.gene28508:intron | 45.0% | |
| CCCAAAGAGAGCAATGCAAA+TGG | + | chr8.4:28119254-28119273 | None:intergenic | 45.0% | |
| GAGACTCAAGTAGCAAGGTA+AGG | + | chr8.4:28119834-28119853 | None:intergenic | 45.0% | |
| GATAGCAGGCAAGTGTACTT+TGG | + | chr8.4:28118842-28118861 | None:intergenic | 45.0% | |
| GCACATTACGCCCAATAAAC+TGG | + | chr8.4:28120427-28120446 | None:intergenic | 45.0% | |
| GGGAAACTGAAAAGGATGGA+AGG | - | chr8.4:28119088-28119107 | MS.gene28508:intron | 45.0% | |
| TAGTAGGTGTGTGGTTGTCA+TGG | + | chr8.4:28119312-28119331 | None:intergenic | 45.0% | |
| ! | AGATCGAAACTGGGGTTGAT+TGG | - | chr8.4:28120153-28120172 | MS.gene28508:intron | 45.0% |
| !! | AACTGTCGAGGAAGTGTCTA+CGG | - | chr8.4:28118909-28118928 | MS.gene28508:intron | 45.0% |
| !! | ATAAAAACAAAAATTATATT+CGG | + | chr8.4:28120292-28120311 | None:intergenic | 5.0% |
| AGAGGTCCTCCCATCGTTTA+TGG | - | chr8.4:28119614-28119633 | MS.gene28508:intron | 50.0% | |
| AGCTACCCATAAACGATGGG+AGG | + | chr8.4:28119623-28119642 | None:intergenic | 50.0% | |
| ATGCACCCAGTGTGCTTCAT+TGG | - | chr8.4:28120187-28120206 | MS.gene28508:intron | 50.0% | |
| CGGAGCTGTTCGTTGAAATC+TGG | + | chr8.4:28119932-28119951 | None:intergenic | 50.0% | |
| GAGGTCCTCCCATCGTTTAT+GGG | - | chr8.4:28119615-28119634 | MS.gene28508:intron | 50.0% | |
| GCCAGGTGACCCAGTTTATT+GGG | - | chr8.4:28120414-28120433 | MS.gene28508:intron | 50.0% | |
| GTAGCGAGACTCAAGTAGCA+AGG | + | chr8.4:28119839-28119858 | None:intergenic | 50.0% | |
| TCATTGGCCACCGTTGACAA+TGG | - | chr8.4:28120203-28120222 | MS.gene28508:intron | 50.0% | |
| ! | ACGGAGCACTCCATTGTCAA+CGG | + | chr8.4:28120216-28120235 | None:intergenic | 50.0% |
| !! | ACTGTCGAGGAAGTGTCTAC+GGG | - | chr8.4:28118910-28118929 | MS.gene28508:intron | 50.0% |
| !! | TCATCGTGATGGACGACACA+GGG | - | chr8.4:28120366-28120385 | MS.gene28508:intron | 50.0% |
| !! | TTCATCGTGATGGACGACAC+AGG | - | chr8.4:28120365-28120384 | MS.gene28508:intron | 50.0% |
| CGCCAGGTGACCCAGTTTAT+TGG | - | chr8.4:28120413-28120432 | MS.gene28508:intron | 55.0% | |
| GAGCACTCCATTGTCAACGG+TGG | + | chr8.4:28120213-28120232 | None:intergenic | 55.0% | |
| GCCCAATAAACTGGGTCACC+TGG | + | chr8.4:28120418-28120437 | None:intergenic | 55.0% | |
| GGTGGCCAATGAAGCACACT+GGG | + | chr8.4:28120195-28120214 | None:intergenic | 55.0% | |
| CGGTGGCCAATGAAGCACAC+TGG | + | chr8.4:28120196-28120215 | None:intergenic | 60.0% | |
| ! | CTTGCAAGGGTGCAGTCCCA+AGG | - | chr8.4:28120252-28120271 | MS.gene28508:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 28118820 | 28120579 | 28118820 | ID=MS.gene28508 |
| chr8.4 | mRNA | 28118820 | 28120579 | 28118820 | ID=MS.gene28508.t1;Parent=MS.gene28508 |
| chr8.4 | exon | 28120468 | 28120579 | 28120468 | ID=MS.gene28508.t1.exon1;Parent=MS.gene28508.t1 |
| chr8.4 | CDS | 28120468 | 28120579 | 28120468 | ID=cds.MS.gene28508.t1;Parent=MS.gene28508.t1 |
| chr8.4 | exon | 28120251 | 28120347 | 28120251 | ID=MS.gene28508.t1.exon2;Parent=MS.gene28508.t1 |
| chr8.4 | CDS | 28120251 | 28120347 | 28120251 | ID=cds.MS.gene28508.t1;Parent=MS.gene28508.t1 |
| chr8.4 | exon | 28119380 | 28119509 | 28119380 | ID=MS.gene28508.t1.exon3;Parent=MS.gene28508.t1 |
| chr8.4 | CDS | 28119380 | 28119509 | 28119380 | ID=cds.MS.gene28508.t1;Parent=MS.gene28508.t1 |
| chr8.4 | exon | 28119126 | 28119280 | 28119126 | ID=MS.gene28508.t1.exon4;Parent=MS.gene28508.t1 |
| chr8.4 | CDS | 28119126 | 28119280 | 28119126 | ID=cds.MS.gene28508.t1;Parent=MS.gene28508.t1 |
| chr8.4 | exon | 28118919 | 28119047 | 28118919 | ID=MS.gene28508.t1.exon5;Parent=MS.gene28508.t1 |
| chr8.4 | CDS | 28118919 | 28119047 | 28118919 | ID=cds.MS.gene28508.t1;Parent=MS.gene28508.t1 |
| chr8.4 | exon | 28118820 | 28118829 | 28118820 | ID=MS.gene28508.t1.exon6;Parent=MS.gene28508.t1 |
| chr8.4 | CDS | 28118820 | 28118829 | 28118820 | ID=cds.MS.gene28508.t1;Parent=MS.gene28508.t1 |
| Gene Sequence |
| Protein sequence |
