AlfalfaGEDB | MS.gene28550

M. sativa cultivar XinJiangDaYe / MS.gene28550

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF05659.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28550.t1	XP_013446475.1	95.4	813	37	0	1	813	1	813	0.00E+00	1358.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28550.t1	Q9FKZ1	38.3	679	390	13	9	675	12	673	5.5e-110	400.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28550.t1	A0A072TSV7	95.4	813	37	0	1	813	1	813	0.0e+00	1358.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053963	MS.gene28550	0.805395	1.36E-49	-1.69E-46
MS.gene054892	MS.gene28550	0.807833	4.17E-50	-1.69E-46
MS.gene05636	MS.gene28550	0.800016	1.76E-48	-1.69E-46
MS.gene056677	MS.gene28550	0.806809	6.87E-50	-1.69E-46
MS.gene058635	MS.gene28550	0.80411	2.53E-49	-1.69E-46
MS.gene060012	MS.gene28550	0.801694	7.98E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene28550.t1	MTR_8g479430	95.203	813	39	0	1	813	1	813	1531
MS.gene28550.t1	MTR_8g479450	79.050	821	160	5	4	813	1	820	1307
MS.gene28550.t1	MTR_5g018060	47.150	842	393	19	6	813	3	826	706
MS.gene28550.t1	MTR_5g018120	46.966	824	389	20	7	812	8	801	664
MS.gene28550.t1	MTR_5g018210	44.024	845	416	19	7	813	8	833	632
MS.gene28550.t1	MTR_8g079450	43.932	824	401	15	15	811	17	806	594
MS.gene28550.t1	MTR_0391s0020	43.269	832	410	17	14	812	15	817	579
MS.gene28550.t1	MTR_8g079400	49.629	673	305	11	164	811	117	780	574
MS.gene28550.t1	MTR_8g079400	49.629	673	305	11	164	811	127	790	573
MS.gene28550.t1	MTR_8g079360	43.917	822	401	16	15	811	18	804	573

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28550.t1	AT5G66900	39.903	827	443	16	9	812	12	807	1.68e-165	500
MS.gene28550.t1	AT5G66900	39.903	827	443	16	9	812	60	855	1.42e-164	499
MS.gene28550.t1	AT5G66910	38.067	838	460	21	1	811	7	812	3.21e-148	455
MS.gene28550.t1	AT4G33300	32.335	835	515	14	4	811	3	814	6.08e-122	387
MS.gene28550.t1	AT4G33300	32.335	835	515	14	4	811	3	814	6.08e-122	387
MS.gene28550.t1	AT5G04720	30.622	836	525	17	6	813	3	811	1.81e-111	359
MS.gene28550.t1	AT5G47280	33.648	636	395	13	182	810	5	620	4.05e-104	334
MS.gene28550.t1	AT1G33560	29.567	832	522	18	1	813	1	787	1.10e-101	332
MS.gene28550.t1	AT5G66900	34.414	555	319	10	9	544	60	588	7.02e-83	277
MS.gene28550.t1	AT5G66890	41.446	415	230	9	403	812	7	413	6.06e-78	258

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Find 140 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCATTTCCATCAAATT+TGG	0.255060	8.4:+27544184	None:intergenic
AACATCATCCGGAACATCTG+AGG	0.613474	8.4:+27546229	None:intergenic
AACCCAACAATAAAACCAGG+TGG	0.733498	8.4:+27547361	None:intergenic
AACTTTCCTTGGTGATTTAA+AGG	0.226077	8.4:-27543765	MS.gene28550:CDS
AAGCTTAGTGCACTTCATGA+AGG	0.583140	8.4:-27544079	MS.gene28550:CDS
AAGGTCCCTAAAACACTCCA+TGG	0.591960	8.4:+27545879	None:intergenic
AATATGTTGCAGATAGTAAG+AGG	0.429120	8.4:-27546075	MS.gene28550:intron
AATCCGATTAGAGAAAGTTT+TGG	0.363968	8.4:-27544323	MS.gene28550:CDS
ACAATAAAACCAGGTGGTTG+AGG	0.479638	8.4:+27547367	None:intergenic
ACAATGTTAGAAATCACATT+TGG	0.445883	8.4:+27544136	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTTGAGTTAAGCAATAT+AGG	-	chr8.4:27546248-27546267	MS.gene28550:CDS	30.0%
AAGTTAACTAACTTCACTCA+AGG	-	chr8.4:27546642-27546661	MS.gene28550:intron	30.0%
AATATGTTGCAGATAGTAAG+AGG	-	chr8.4:27545490-27545509	MS.gene28550:intron	30.0%
ACATTCATCACTTTACAAGT+TGG	+	chr8.4:27545950-27545969	None:intergenic	30.0%
AGAAATGCTACCAAATTTGA+TGG	-	chr8.4:27547371-27547390	MS.gene28550:CDS	30.0%
AGAAGACATGTTTAACCAAT+TGG	-	chr8.4:27545079-27545098	MS.gene28550:intron	30.0%
AGATGAACTCAAGAAGAAAT+TGG	-	chr8.4:27543870-27543889	MS.gene28550:CDS	30.0%
AGATTTGCAATTGGAAGATT+TGG	-	chr8.4:27545233-27545252	MS.gene28550:intron	30.0%
AGTGAAAGAGTTGAATTAAG+AGG	-	chr8.4:27544162-27544181	MS.gene28550:CDS	30.0%
AGTGACATGTACAAAACTAA+AGG	+	chr8.4:27544638-27544657	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	27543718	27547869	27543718	ID=MS.gene28550
chr8.4	mRNA	27543718	27547869	27543718	ID=MS.gene28550.t1;Parent=MS.gene28550
chr8.4	exon	27547224	27547869	27547224	ID=MS.gene28550.t1.exon1;Parent=MS.gene28550.t1
chr8.4	CDS	27547224	27547869	27547224	ID=cds.MS.gene28550.t1;Parent=MS.gene28550.t1
chr8.4	exon	27546220	27546623	27546220	ID=MS.gene28550.t1.exon2;Parent=MS.gene28550.t1
chr8.4	CDS	27546220	27546623	27546220	ID=cds.MS.gene28550.t1;Parent=MS.gene28550.t1
chr8.4	exon	27545736	27546085	27545736	ID=MS.gene28550.t1.exon3;Parent=MS.gene28550.t1
chr8.4	CDS	27545736	27546085	27545736	ID=cds.MS.gene28550.t1;Parent=MS.gene28550.t1
chr8.4	exon	27544657	27544865	27544657	ID=MS.gene28550.t1.exon4;Parent=MS.gene28550.t1
chr8.4	CDS	27544657	27544865	27544657	ID=cds.MS.gene28550.t1;Parent=MS.gene28550.t1
chr8.4	exon	27543718	27544550	27543718	ID=MS.gene28550.t1.exon5;Parent=MS.gene28550.t1
chr8.4	CDS	27543718	27544550	27543718	ID=cds.MS.gene28550.t1;Parent=MS.gene28550.t1

Gene Sequence

>MS.gene28550

ATGGCTATGGTTCTAGATGCTGTTGTTGGGAAATTAGTTGAAGAACTAATGAGTTCAGTTGTTGATATGAAGAACAAAGCTTTGAAGTTCAAACCAACTCTAGATAGATTAGAAGCTACTCTCCAATCATTAGGACCATTGATCAATCAAATAGATGAACTCAAGAAGAAATTGGATCATTCACCTAATGAAACAAAGACACTGATCAAACAAATGAAAGATGGAAAAGAACTTGTTCTAAAATGTTCTAATGATGACAAAATCCAGTGGTGGAATTGTTGTTACAAAAAAGCACAGTATCAAGAAGAACTTGAAGCATTGGATGAAGAGATTAAGAGATTCTTTGGTCTTGATATGATAGCTCAAGGTGCAGTGACTGGATTGGAAACACTTTTGGAGATTAGAGAGTTTCATGCTGAATTTAGAAATGCTAATGTTGTGAGAAGTGAAAGAGTTGAATTAAGAGGTGTTTGTTTGCCACCTCAACCACCTGGTTTTATTGTTGGGTTGGATGGTCCTTTGAATGAGCTGAAGATGAGATTGTTGAAAGATGAGGTTAGTGTTTCTGTTGTTACTGTTACCGGTTCTGGTGGTTCGGGGAAATCTACGTTGGCAAAAAGGTTTTGTTGGGATGAAGAAGTAAAAGGTATGATTTTGTTAATGAATTTTTGCATCTCTTTCTCCTTCTTGTATTTCATTGGTTTAGATTTTGTGTGGAATATTGTTCTTTTGTGATGATGTTTTATGTGAAACTAGTTTAGTACATGTCATCTGACTAAAATGTCACGGGTCGGGTTGTAGTCCTGAAAACAACATTTTGTGTAAAAAAACAGAGTAAGACTGCATACTATACACCAAAAATAGTGGGACTCCTTCTCAAACTCTGCGTATGCGGGAGCTTTAGTGCATCGGATTGACCTTTAGTTTTGTACATGTCACTTTAATGTTAGTTATTATGAGCTAAAAGGGGCTTACATTTTGAATTTGTTTCACACATTCAATAAGAACTTACCATTTGCCACTTTATACCACATTATCAATACTTGTTTAACATTTCAACTGATACAGCTAAGCTACACTTTCGAAAATAACATTTAGTTATATTTGTGCATGTTTTATATCTAAAATAAGATATCCACTGCCAAATGTGATGAGTGCCCTAATTTGTGCATGTTTCAAATGATACTAGAATATGATGCACTTGAGTTTGCATACTTCTAAATGTGTCTGATTTTGTTCTGGTTAGGTAAATTCATGGAAAATATTTTCTTCATTACCTTTGCAAAAACACCAAAGCTGAATACTATAGTGCAGAATCTGTATCAACACACTGGTTACCAAGTTCCGGATTTTCAAAGCGAAGAAGACATGTTTAACCAATTGGAACATTTGATGAAACAAGTTGTGAAGAAAGGACCAATATTGTTAGTCCTAGACGATGTTTGGCTCGGATCAGAATCACTTGTTGATAATTTTGTGTTCGAGATTCCAAACTACAAGATTTTGGTGACATCAAGATTTGCAATTGGAAGATTTGGTCATCCATTCGTCTTGAAACCTCTTTCTGAAGCACATGCTATAAATCTGTTTAAACATTCAGCATCCTTAACTAAGAGCACCTCAGATGTTCCGGATGATGTTATCAAAGAGGTGATTTCTAAAGTCCTTTCCATAATATAAGTCATTGGTTTAGCGGCGCGGTTTATTACTTATTTGCCTTCCGTTCCTCTATAATTCATTGTAAATATATTTTGATGTATATTAATGTACAAAATATGTTGCAGATAGTAAGAGGGTGTAGCGGTTCTCCCTTGGCACTTCGAGTGAGTGGCAGATCGTTAATTAACGAACAACTGATAGTTTGGCTTAACAGAGCAAGGGAATTATCAGCTGGTAGGTCAATTCTTGATTCTAACAAGGACGTGCTTTCTTGTCTCCAAAAGAGCTTAGATGTTTTGGATCCTAAGTCCATGGAGTGTTTTAGGGACCTTGGCTTATTTCCAGAAGATCAGAGGATCCCTGCTGCTGCACTTATTGATATGTGGGCAGAACTAAGGAACGATGATGATGCAAGTGCAATGGAGAAGATTTATAAACTAGTCAACCTCAACTTAGCAGATATTATTGTTACAAGGTATTATATATTGATTGGTGTTTCTTAAACAGTTTGATATGGTATATAGTTTACGATAAGAGTGTTGAAATTTGGTCTAGCTCATCCATACAAAACCAACTTGTAAAGTGATGAATGTCTCTCTTTATAAATTCTTATCAAGAATTCTATATTTCCAATGCGAGACTTGAGTTTTTCTCAATGAAAAGAATCATGTGGGTTTGTAAGGTTGAGTTAAGTCAAACTCAAATTCTTGGATCGTATCAGAGCTTGTTCAAGGTCTGTTGGATCACTTACTATCAGGTTTCCACTATTGGGCTATTTAGATCATGCTCCAAATATCTCACATTGAATGTGATATGACCTGATAATGTGTTTATAAGTGGATACAATCCGCACCATACAAACTGATTTTATAAGGTTGAGTTAAGCAATATAGGACGAAGGGAGTACTTAGGTTATTATGTTTATTTTTTAAACTATAAAAGTTAGTTTTGTTAAATTTTATGTTAGGACTTAGGAGTAAGGATCAAACTCTTGACAATCTTGTTACTCCACTCCTTGACACCCTCATTATATCCTCAATGTTGGAACAAAGGGATTGATTTTGTGAATTTTGAGAGAAAATATAGAGGAGAAAAGAGAAGAGATTAGAGACAATGGGAGAAATTAAACTTGTATATTATATTGCAAAATTCTCTAATGGAAACACATATGAGAGCTAAACTATTTATAGTCTATATTACTTAAGTAACAAGTAAACTCCTCTAACAACTTGACAACACACTTTTCTAACTTAATTCACAACAAGAAGTTAACTAACTTCACTCAAGGTCATTACTACGAATTTCGTTTTGAAAGCACGGTCTTTGATTTGTTTTCATTGATCAGGAAAGTTGCAAGTGGCACCATTGACTACAACTACCATTATGTTACACTACATGGTCTTCTTCGGGATCTAGCCATTCGCGACAATAGCCAAGAGACAGAGGATAAGAGGAATCGACTCATAATTGACACAAGTGCAAATAATCTTCCTCCATGGTGGACTTCTGAGAATGAGTATCACATTGAAGCCCGCATATTATCCATATCAACTGGTTTGTTCATCTTTCTCTCTTAACTCACAAACTGATAGAGTTTTTCTCTGCTCGAACATACAAACTGATAGAGTACTTAAACATTGATTGTTGAATCTTTTTGCAGATGAAACATTCACTTCAAAATGGTGTAACTTACAACCAGCAGAAGTTGAGGTTTTAGTGTTAAACCTTAGAGAAAAGAAGTTTGCACTACCAATGTTCATGAAAAAAATGAACAAGCTAAAAGTTTTGTTAATCACAAATTACGACTTCTTTCCGGCTGAATTAGAGAATTTTGATATGCTCGATCATTTATCGAATCTCAAAAGAATCCGATTAGAGAAAGTTTTGGTTCCTTTCCTTGGAAAAACTGTATTACAATTGAAGAATCTTCAGAAGTGTTCTTTTTTTATGTGCAATGTGAATAAAGCATATGAAAATTACACAATGGAAGATTCAGAAATGCTACCAAATTTGATGGAAATGAATTTTGACTATTGTGATATGGTGGAATTACCAAATGTGATTTCTAACATTGTATCCCTAAAGAAGCTTAGTATTACAAATTGTCATAAGCTTAGTGCACTTCATGAAGGAATTGGAAAATTGGTCAATTTAGAATCACTAAGGCTAAGTTCATGCAGTGGTTTATTAGAATTACCAAACTCAATCACAAATCTTCATAAGCTAAAGTTTCTAAACATTTCTGGATGCATAAGCCTTAGTCAATTACCTGAGAACATTGGTGAGTTGAAGAAATTAGAAAAGATCAATATGAGAGGTTGTTCAAATATAAGTGAATTACCATCCTCAGTTATGGAACTTGAAGGATTAAAGCATGTGATATGTGGTGATGAAGAGACTGCTGAAAAATGGGAACCTTACAAAACTTTCCTTGGTGATTTAAAGGTAGAGGTTGTTCAAGAAGATTTCAATTTAAATTTTCTTCACAATTAG

Protein sequence

>MS.gene28550.t1

MAMVLDAVVGKLVEELMSSVVDMKNKALKFKPTLDRLEATLQSLGPLINQIDELKKKLDHSPNETKTLIKQMKDGKELVLKCSNDDKIQWWNCCYKKAQYQEELEALDEEIKRFFGLDMIAQGAVTGLETLLEIREFHAEFRNANVVRSERVELRGVCLPPQPPGFIVGLDGPLNELKMRLLKDEVSVSVVTVTGSGGSGKSTLAKRFCWDEEVKGKFMENIFFITFAKTPKLNTIVQNLYQHTGYQVPDFQSEEDMFNQLEHLMKQVVKKGPILLVLDDVWLGSESLVDNFVFEIPNYKILVTSRFAIGRFGHPFVLKPLSEAHAINLFKHSASLTKSTSDVPDDVIKEIVRGCSGSPLALRVSGRSLINEQLIVWLNRARELSAGRSILDSNKDVLSCLQKSLDVLDPKSMECFRDLGLFPEDQRIPAAALIDMWAELRNDDDASAMEKIYKLVNLNLADIIVTRKVASGTIDYNYHYVTLHGLLRDLAIRDNSQETEDKRNRLIIDTSANNLPPWWTSENEYHIEARILSISTDETFTSKWCNLQPAEVEVLVLNLREKKFALPMFMKKMNKLKVLLITNYDFFPAELENFDMLDHLSNLKRIRLEKVLVPFLGKTVLQLKNLQKCSFFMCNVNKAYENYTMEDSEMLPNLMEMNFDYCDMVELPNVISNIVSLKKLSITNCHKLSALHEGIGKLVNLESLRLSSCSGLLELPNSITNLHKLKFLNISGCISLSQLPENIGELKKLEKINMRGCSNISELPSSVMELEGLKHVICGDEETAEKWEPYKTFLGDLKVEVVQEDFNLNFLHN