AlfalfaGEDB | MS.gene05636

M. sativa cultivar XinJiangDaYe / MS.gene05636

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0007165 GO:0008150 GO:0009987 GO:0050789 GO:0050794 GO:0065007
PFAM: PF01582.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05636.t1	XP_003629138.1	60.3	559	99	5	99	534	526	1084	1.90E-155	559.3
MS.gene05636.t1	XP_003629138.1	70.4	98	29	0	1	98	1	98	5.10E-31	146

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05636.t1	Q40392	58.7	92	38	0	2	93	3	94	3.3e-23	111.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05636.t1	G7L9E6	60.3	559	99	5	99	534	526	1084	1.4e-155	559.3
MS.gene05636.t1	G7L9E6	70.4	98	29	0	1	98	1	98	3.7e-31	146.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053298	MS.gene05636	0.804756	1.85E-49	-1.69E-46
MS.gene053963	MS.gene05636	0.817129	3.87E-52	-1.69E-46
MS.gene054222	MS.gene05636	0.825511	4.51E-54	-1.69E-46
MS.gene05636	MS.gene057102	0.806064	9.86E-50	-1.69E-46
MS.gene05636	MS.gene058159	0.811887	5.59E-51	-1.69E-46
MS.gene05636	MS.gene062512	0.812242	4.68E-51	-1.69E-46
MS.gene05636	MS.gene068350	0.830545	2.77E-55	-1.69E-46
MS.gene05636	MS.gene068565	0.816695	4.84E-52	-1.69E-46
MS.gene05636	MS.gene069024	0.810978	8.81E-51	-1.69E-46
MS.gene05636	MS.gene074045	0.80241	5.68E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05636.t1	MTR_8g073730	76.378	381	53	2	191	534	704	1084	0.0	579
MS.gene05636.t1	MTR_8g073730	75.510	98	23	1	99	195	526	623	1.87e-41	160
MS.gene05636.t1	MTR_8g073730	70.408	98	29	0	1	98	1	98	5.06e-38	149
MS.gene05636.t1	MTR_8g012190	69.713	383	68	5	189	532	692	1065	7.13e-170	509
MS.gene05636.t1	MTR_8g012190	62.069	116	39	2	81	195	502	613	6.24e-38	149
MS.gene05636.t1	MTR_8g012190	70.000	80	24	0	19	98	13	92	4.10e-28	119
MS.gene05636.t1	MTR_8g012190	69.713	383	68	5	189	532	698	1071	8.38e-170	509
MS.gene05636.t1	MTR_8g012190	72.449	98	27	0	1	98	1	98	7.95e-39	152
MS.gene05636.t1	MTR_8g012190	62.069	116	39	2	81	195	508	619	6.50e-38	149
MS.gene05636.t1	MTR_8g012180	64.631	393	91	4	189	534	487	878	4.43e-162	483

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05636.t1	AT4G11170	54.639	97	43	1	1	97	1	96	2.18e-25	111
MS.gene05636.t1	AT5G36930	56.322	87	38	0	9	95	12	98	2.45e-24	108
MS.gene05636.t1	AT5G36930	56.322	87	38	0	9	95	12	98	2.45e-24	108
MS.gene05636.t1	AT5G36930	56.322	87	38	0	9	95	15	101	2.45e-24	108
MS.gene05636.t1	AT5G36930	56.322	87	38	0	9	95	12	98	2.75e-24	108
MS.gene05636.t1	AT1G72930	55.952	84	37	0	11	94	9	92	4.91e-24	98.6
MS.gene05636.t1	AT1G72930	55.952	84	37	0	11	94	9	92	5.20e-24	99.4
MS.gene05636.t1	AT1G72890	56.322	87	38	0	8	94	36	122	7.57e-24	104
MS.gene05636.t1	AT1G72890	56.322	87	38	0	8	94	36	122	1.40e-23	104
MS.gene05636.t1	AT5G17680	55.172	87	39	0	9	95	16	102	2.31e-23	105

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Find 92 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGAGAAATACGAGAAA+GGG	0.547348	3.2:-53220363	None:intergenic
AACAACTGAGATGGGTTGAT+TGG	0.459722	3.2:+53219665	MS.gene05636:CDS
AACGATGCCACCAGCTGAAG+AGG	0.520041	3.2:+53221556	MS.gene05636:CDS
AAGAGTATCCATGAATATTC+GGG	0.497545	3.2:-53220642	None:intergenic
AAGAGTGAGGAGCTTGGAGC+AGG	0.486845	3.2:+53217564	MS.gene05636:CDS
AAGATGTTTCTATTTGTCTT+CGG	0.460345	3.2:-53221641	None:intergenic
AAGGAAAGAATCACTAGAAT+TGG	0.379898	3.2:-53221210	None:intergenic
AATACGAGAAAGGGAATTTC+TGG	0.208951	3.2:-53220354	None:intergenic
AATCACTATACTCAGCCGGA+AGG	0.647581	3.2:-53221229	None:intergenic
AATTTCCAAACAACTGAGAT+GGG	0.512916	3.2:+53219657	MS.gene05636:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTAAGAATCAGCTATGA+TGG	+	chr3.2:53218753-53218772	MS.gene05636:intron	30.0%
AAATCCTAAGTTGTTTGGTT+TGG	+	chr3.2:53218428-53218447	MS.gene05636:intron	30.0%
AAATGATGTACTATATTGCC+TGG	+	chr3.2:53221041-53221060	MS.gene05636:intron	30.0%
AAGGAAAGAATCACTAGAAT+TGG	-	chr3.2:53221213-53221232	None:intergenic	30.0%
AAGTGACAGGAAATTTATTC+AGG	+	chr3.2:53220785-53220804	MS.gene05636:intron	30.0%
AAGTTTGTATGATAGGGATA+TGG	+	chr3.2:53218111-53218130	MS.gene05636:intron	30.0%
AATTTCCAAACAACTGAGAT+GGG	+	chr3.2:53219657-53219676	MS.gene05636:CDS	30.0%
ACAAAGAAGATATGTTGTCT+AGG	+	chr3.2:53217799-53217818	MS.gene05636:intron	30.0%
AGTCCCTCAAATTTATTAGA+AGG	-	chr3.2:53220064-53220083	None:intergenic	30.0%
AGTTTGTATGATAGGGATAT+GGG	+	chr3.2:53218112-53218131	MS.gene05636:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	53217417	53221715	53217417	ID=MS.gene05636
chr3.2	mRNA	53217417	53221715	53217417	ID=MS.gene05636.t1;Parent=MS.gene05636
chr3.2	exon	53217417	53217710	53217417	ID=MS.gene05636.t1.exon1;Parent=MS.gene05636.t1
chr3.2	CDS	53217417	53217710	53217417	ID=cds.MS.gene05636.t1;Parent=MS.gene05636.t1
chr3.2	exon	53219517	53219792	53219517	ID=MS.gene05636.t1.exon2;Parent=MS.gene05636.t1
chr3.2	CDS	53219517	53219792	53219517	ID=cds.MS.gene05636.t1;Parent=MS.gene05636.t1
chr3.2	exon	53220164	53220682	53220164	ID=MS.gene05636.t1.exon3;Parent=MS.gene05636.t1
chr3.2	CDS	53220164	53220682	53220164	ID=cds.MS.gene05636.t1;Parent=MS.gene05636.t1
chr3.2	exon	53221200	53221715	53221200	ID=MS.gene05636.t1.exon4;Parent=MS.gene05636.t1
chr3.2	CDS	53221200	53221715	53221200	ID=cds.MS.gene05636.t1;Parent=MS.gene05636.t1

Gene Sequence

>MS.gene05636

ATGTCTTCTTCCTCTGATCATCCATGGATCTACGACGTGTTCGTAAGTTTTAGAGGGGAGGATACTCGTAGGAACTTCGTTTCTCATCTCTATGCTGCACTCACAAACGCGGGAATCCGCACTTTTCTTGATGAAGAAGAGCTTAGGAAGAGTGAGGAGCTTGGAGCAGGACTAAGGAGAGCAATAGAAGGGTCTCGGATATCTATTGTTGTTTTCTCGGAGAACTATGCAGGATCTAGCTGGTGTCTTAAGGAGCTTGTACATATCATGGAATGCCAAAAAGATATTGGCCAGGTGGTTTTACCCGTATTTTACGATGTTTACCCATCCTATGTCCGTAAAATTTTTTCCTTGACAGTTGCTTCCAAAAGAAAAGAAGAAGACAAAGAAGATATGTTGTCTAGGTGGAGCAAAGCACTCTCCCAAGTTGCAAATCTTTCTGGTTGGGATGCCAAAAATTTCAGGTATTTGAGATTATAATCGGACTATTTCATAATTTATGTTCATTATTTGTCTTTATAACACTATATTTATTATTACTATTACTGAAGGACTGATGGCGAACTAGTGAAGAAAATTGTTGACGACATTTTGGTAAAACTAGATGTCTCATTGTTATCTATTACTAAATATCCAGTTGGATTGGAATCCCGTGTGCAACAAATTACCAAGTTTATTGATAATCAATCAAATAAAGTTTGTATGATAGGGATATGGGGAATGGGTGGCTCGGGCAAAACAACCACGGCCAAAGCTATCTACAATCAAATCCATCGTAAATTTGAGGGAAGAACAAGTTTTGTTGAAAGTATTCGGGAAGTTTGTGATACTAATTGTAAAGGGATTATTCCTTTACAACAACAACTTCTTTCAGATCTCCTGCAAATAAAACAGGAGATTCATAGCATTGCATCAGGGATAACTAAGATCGAGACAAGGCTCCAGGGGAAAAAAAGCTTTCGTCGTACTTGATGATGTCACCAAATTTGAGCAGTTAAAAGCCCTGTGTGGAAATCCTAAGTTGTTTGGTTTGGGAAGTGTATTGATTATTACAACTAGAGACGTACGCCTACTCGATTCACTTGAAGTTGACTATGTCTTCACAATGATGGAAATGGACAAAAACCAGTCCCTTGAGCTTTTCAGCTGTCATGCTTTCAGGCAACCATGTCCTAGGAAAGATTTTATTGAACTCTCTAGAAATGTAGTTACTTATTGCGGAGGATTACCACTGGCTCTTGAAGTTCTTGGATCTTATTTATCCAAGAGGACAAAACAGGAGTGGAGTAGTGCACTATCAAAATTAGAGAAAATTCCCAATGATCAAGTGCAACAGAAACTAAGAATCAGCTATGATGGTTTAGAAGATCATACATTAAAGGATATATTTCTTGACATATGCTGTTTCTTCATTGGAAAGAACAGAGCTGATGTTACAGAGATACTTAATGGCTGTGGTCTTCATGCTGATATTGGAATCTCTGTTCTCATAGAGCGTAGCCTCGTAAAAGTTGTAAAGAATAACAAGCTTCAAATGCATGATTTACTACGAGATATGGGAAGAGCAATTGTTGGCGAAAGTTCAGCAAAAGAGCCTGCAAAGCATAGTCGATTGTGGTTTCGTGAAGATGTGCTGGATGTTTTGTCAAAAAATACTGTAAGAACTTTTGAGCATCCTCTATAATCTAATCAAGATCTTAAGACTTTGTTTCTAGTCTAGTTTTGCTCTTCATAGTTGTTGGCTGAAATTATTTGATGCATGATTTACATTCTCATGTTCATTACCAATGTTCTTAGGCTGCTGCACCTGCAGTTATATATGTATTACTTTCTACCTATGAACCACCAACACATACACAACATTTTACAATAAGATGTTGACAATGGTAATATGTTGACAAAAAAGAAAAAATTGATTATAGTCGCATATGTTAGTATATTGTTTGACATTGACATGTGACGGATACAAGACAAGCCCTTGTGACGGATACAAGACAAGCCCTCAATATGGAGTGTCGGTGCTACCTAAGCTTCTAGCTAGCAAGGCTAATGATACAAATTTTCTCTTACTTTTCTCTGCTTTTTTTACTTCACATGCAGGGAACAGACATTGTTGAGGGATTGATTTTGAGGTTGCAAAGAACAACCAGAATTAGATTCAGTACTAATGCTTTCCAGGAGATGAAAAAGTTGAGGCTTTTAAAACTTGACGGTGTTCACCTCAGCGGAGATTATGGGTTAATTTCCAAACAACTGAGATGGGTTGATTGGCGACGATCTACCTTCAACTTTATACCGAATGACTTTGATCAGGGAAATCTAGTTGCTTTTGAATTAAAAAACAGCAATATTAAACATGTTTGGCAGGAGACCAAGGTATAATAACATTCTTTTAAAACTTAAAGGTTGTAGACATTATAATCTATTTCTACCTTTTCATTTCATTTTTTCTTCTCTTAATTTTCTTTTAAACAATTATTTTCTTGTAGTTGTTGGAGAAGCTAAAATTTCTCAATCTCAGTCATTCCCCGTATTTGAAAAGTACCCCTGACTTTTCAAAATTACCAAATCTAGAAAAACTCATTATGAAGGATTGTCCAAGTTTGTCTGAGGTACACTCGTCCATTGGCGATCTCAAGAATATCCTTCTAATAAATTTGAGGGACTGTACAAGTCTTGCCAGTCTCCCAAGAGAGATCTATCATTTGATATCAGTGAAAACTCTTATTCTTTCTGGTTGTTTAAAGATTGACAAATTGGAAGAAGATATATTGCAAATGGAATCCTTGACAACTCTAATTGCAGCAAATACTGGTGTCAAACAAGTTCCTTTTTCGATTGTTAGATCAAAAAGCATTGCGTATATATCTCTATGTGGATATGAAGGATTATCATCTGATGTTTTTCCTTCTTTCATTTGGTCTTGGATGTCACCAACCAGAAATTCCCTTTCTCGTATTTCTCCGTTTGCAGGCAATTCATTGTCTCTAGTTTCCTTAGATGTAGAGAGTAGTAGTACGGACTATCAATCACCAATGCTTACTATCCTTTCAAAACTTAGATGTGTTTGGGTTCAATGCCACTCAGAGATTCAACTAACTCGAGAGTTAAAAAAATTTGTTGATGATTTATATGATGTGAATTTTACTGAGTTGGAAACGACATTACATGGAACACAAATCTCAAATCTTTCCTTGAGATCACTTTTGATTGGAATGGGAAGTTCCCGAATATTCATGGATACTCTTGGGAAAAGCTTATCACAGGTTCCTTCTCTATCCTTCACCTTTACTATATTTGTTATTAGATAAGAGAACATAAGATGATTTTTTTTTTGTTTCATGAAATGGTAGTATAAAAATTTCTGAAAGTGACAGGAAATTTATTCAGGTGCATATCAGATAAACTAATACAATCTAAGAAGAACAAAAAGCTACAGTCTAACAAAAACTAGGTAACTAGATAATTGATTTTACAGATATCGAGCTTTAAAAGCTTAGTATATGTTGTTTATTTTCTCTCTAGATGAGTAGGAATCCATAATGGTATGCTAAATGTTTTTATAATGTAACCCTTCATTAGAAAACAAAACCTTCAAGTTGTTGCATACGCTTATTCATGAAGAAATGATGTACTATATTGCCTGGTTTCGTTGGATCAGTTTCCTTGTATATATTTCTTCTCTTTAGTACACTGTTTTGACACAGTAAATGGCACAAAATGTCCATTTGCAAAGCATAACTAAAAATTACATAAATAACTACACATATTTTCATGATACAGGGACTGGTAACCAATTCTAGTGATTCTTTCCTTCCGGCTGAGTATAGTGATTCTTGCATGAAGGGAATCACGTTATGTGTTGTTTATTCGTCAACACCTCAAAATCTGGCTAGTGAATGTCTCACTAGTGTCTTAATCATTAATTACACAAAACTCACTATCCAGATTTACAAGCGTGACACAATAATGTCCTTTAATGATGAAGATTGGCAAGGTGTAATATCAAATTTAGGAGTTGGTGACAATGTGGAGATTTTTGTAGCTATTGGGCATGGATTAACTGTTAAGGAGATGGTTGTCTATTTAGTATATGACGAGTCAAATATTATGGAAATGCAACCATCACCTAATGTGAAAACGATGCCACCAGCTGAAGAGGACGTGCAACCATCACTTGATGTGAAAATGGAGCCATCAGTTGTTGTCAAGAATGAACCATTACCGAAGACAAATAGAAACATCTTTACAAGACTTGCAAAGAGAGTGGGAGAGTGTTTATGTTTGAATCAGAATTGA

Protein sequence

>MS.gene05636.t1

MSSSSDHPWIYDVFVSFRGEDTRRNFVSHLYAALTNAGIRTFLDEEELRKSEELGAGLRRAIEGSRISIVVFSENYAGSSWCLKELVHIMECQKDIGQGTDIVEGLILRLQRTTRIRFSTNAFQEMKKLRLLKLDGVHLSGDYGLISKQLRWVDWRRSTFNFIPNDFDQGNLVAFELKNSNIKHVWQETKIDKLEEDILQMESLTTLIAANTGVKQVPFSIVRSKSIAYISLCGYEGLSSDVFPSFIWSWMSPTRNSLSRISPFAGNSLSLVSLDVESSSTDYQSPMLTILSKLRCVWVQCHSEIQLTRELKKFVDDLYDVNFTELETTLHGTQISNLSLRSLLIGMGSSRIFMDTLGKSLSQGLVTNSSDSFLPAEYSDSCMKGITLCVVYSSTPQNLASECLTSVLIINYTKLTIQIYKRDTIMSFNDEDWQGVISNLGVGDNVEIFVAIGHGLTVKEMVVYLVYDESNIMEMQPSPNVKTMPPAEEDVQPSLDVKMEPSVVVKNEPLPKTNRNIFTRLAKRVGECLCLNQN