Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28561.t1 | XP_024627635.1 | 97.5 | 566 | 14 | 0 | 1 | 566 | 17 | 582 | 1.90E-302 | 1047.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28561.t1 | G7LGE4 | 97.5 | 566 | 14 | 0 | 1 | 566 | 16 | 581 | 1.4e-302 | 1047.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013007 | MS.gene28561 | PPI |
| MS.gene28561 | MS.gene67086 | PPI |
| MS.gene062759 | MS.gene28561 | PPI |
| MS.gene28561 | MS.gene044000 | PPI |
| MS.gene28561 | MS.gene48480 | PPI |
| MS.gene28561 | MS.gene24360 | PPI |
| MS.gene28561 | MS.gene38738 | PPI |
| MS.gene054621 | MS.gene28561 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28561.t1 | MTR_8g079840 | 97.527 | 566 | 14 | 0 | 1 | 566 | 16 | 581 | 0.0 | 1137 |
| MS.gene28561.t1 | MTR_8g079840 | 97.723 | 483 | 11 | 0 | 1 | 483 | 16 | 498 | 0.0 | 971 |
| MS.gene28561.t1 | MTR_5g017790 | 68.007 | 572 | 123 | 8 | 1 | 566 | 1 | 518 | 0.0 | 706 |
| MS.gene28561.t1 | MTR_5g017790 | 68.007 | 572 | 123 | 8 | 1 | 566 | 13 | 530 | 0.0 | 705 |
| MS.gene28561.t1 | MTR_5g017790 | 64.588 | 449 | 99 | 8 | 1 | 443 | 13 | 407 | 3.02e-170 | 489 |
| MS.gene28561.t1 | MTR_1g021040 | 49.821 | 560 | 244 | 7 | 8 | 566 | 8 | 531 | 9.93e-155 | 454 |
| MS.gene28561.t1 | MTR_3g101340 | 48.673 | 565 | 220 | 13 | 8 | 566 | 23 | 523 | 1.33e-153 | 451 |
| MS.gene28561.t1 | MTR_3g101340 | 48.307 | 561 | 229 | 11 | 8 | 566 | 48 | 549 | 4.74e-153 | 451 |
| MS.gene28561.t1 | MTR_3g101340 | 47.993 | 573 | 220 | 13 | 8 | 566 | 48 | 556 | 6.16e-152 | 448 |
| MS.gene28561.t1 | MTR_4g058015 | 33.849 | 582 | 310 | 18 | 18 | 557 | 117 | 665 | 1.09e-77 | 259 |
| MS.gene28561.t1 | MTR_5g079910 | 37.604 | 359 | 185 | 6 | 244 | 566 | 140 | 495 | 4.33e-69 | 232 |
| MS.gene28561.t1 | MTR_8g078760 | 26.471 | 578 | 366 | 11 | 22 | 568 | 66 | 615 | 2.57e-44 | 167 |
| MS.gene28561.t1 | MTR_5g018820 | 28.597 | 563 | 326 | 15 | 25 | 554 | 77 | 596 | 4.97e-42 | 160 |
| MS.gene28561.t1 | MTR_5g012790 | 26.551 | 403 | 259 | 9 | 187 | 567 | 183 | 570 | 1.10e-39 | 153 |
| MS.gene28561.t1 | MTR_4g068920 | 32.680 | 306 | 170 | 9 | 249 | 530 | 285 | 578 | 2.57e-35 | 140 |
| MS.gene28561.t1 | MTR_8g078760 | 24.544 | 493 | 315 | 10 | 22 | 485 | 66 | 530 | 1.10e-26 | 114 |
| MS.gene28561.t1 | MTR_5g079910 | 32.075 | 212 | 110 | 4 | 244 | 421 | 140 | 351 | 7.14e-24 | 103 |
| MS.gene28561.t1 | MTR_3g073590 | 33.505 | 194 | 116 | 6 | 343 | 530 | 573 | 759 | 1.72e-19 | 93.2 |
| MS.gene28561.t1 | MTR_5g061340 | 28.986 | 207 | 134 | 6 | 343 | 543 | 746 | 945 | 3.19e-16 | 82.8 |
| MS.gene28561.t1 | MTR_1g035690 | 29.050 | 179 | 111 | 7 | 368 | 539 | 396 | 565 | 1.29e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28561.t1 | AT4G37080 | 60.580 | 586 | 186 | 11 | 2 | 566 | 33 | 594 | 0.0 | 624 |
| MS.gene28561.t1 | AT4G37080 | 60.580 | 586 | 186 | 11 | 2 | 566 | 33 | 594 | 0.0 | 624 |
| MS.gene28561.t1 | AT4G37080 | 60.580 | 586 | 186 | 11 | 2 | 566 | 20 | 581 | 0.0 | 623 |
| MS.gene28561.t1 | AT4G37080 | 59.245 | 503 | 160 | 11 | 2 | 483 | 33 | 511 | 2.44e-170 | 493 |
| MS.gene28561.t1 | AT5G42690 | 49.120 | 568 | 206 | 12 | 1 | 562 | 2 | 492 | 1.21e-149 | 440 |
| MS.gene28561.t1 | AT5G42690 | 49.023 | 563 | 208 | 10 | 4 | 564 | 36 | 521 | 1.56e-148 | 438 |
| MS.gene28561.t1 | AT5G42690 | 49.023 | 563 | 208 | 10 | 4 | 564 | 36 | 521 | 1.56e-148 | 438 |
| MS.gene28561.t1 | AT5G42690 | 49.201 | 563 | 206 | 11 | 4 | 564 | 36 | 520 | 9.45e-148 | 436 |
| MS.gene28561.t1 | AT5G42690 | 49.257 | 538 | 194 | 10 | 27 | 562 | 7 | 467 | 1.18e-142 | 421 |
| MS.gene28561.t1 | AT2G39690 | 40.823 | 316 | 160 | 8 | 269 | 566 | 96 | 402 | 2.41e-70 | 232 |
| MS.gene28561.t1 | AT2G39690 | 40.823 | 316 | 160 | 8 | 269 | 566 | 177 | 483 | 1.68e-69 | 233 |
| MS.gene28561.t1 | AT2G39690 | 41.270 | 315 | 159 | 9 | 269 | 566 | 177 | 482 | 1.98e-69 | 232 |
| MS.gene28561.t1 | AT2G39690 | 40.823 | 316 | 160 | 8 | 269 | 566 | 203 | 509 | 2.01e-69 | 233 |
| MS.gene28561.t1 | AT2G39690 | 41.270 | 315 | 159 | 9 | 269 | 566 | 203 | 508 | 3.34e-69 | 232 |
| MS.gene28561.t1 | AT3G12540 | 38.310 | 355 | 200 | 5 | 222 | 566 | 141 | 486 | 2.17e-66 | 224 |
| MS.gene28561.t1 | AT3G12540 | 38.310 | 355 | 200 | 5 | 222 | 566 | 208 | 553 | 4.93e-66 | 225 |
| MS.gene28561.t1 | AT5G60720 | 30.000 | 570 | 295 | 19 | 63 | 556 | 122 | 663 | 1.48e-57 | 204 |
| MS.gene28561.t1 | AT1G16750 | 33.636 | 330 | 174 | 8 | 270 | 559 | 178 | 502 | 3.66e-47 | 173 |
| MS.gene28561.t1 | AT2G39690 | 41.126 | 231 | 111 | 7 | 269 | 483 | 203 | 424 | 1.57e-43 | 161 |
| MS.gene28561.t1 | AT2G39690 | 41.739 | 230 | 110 | 8 | 269 | 483 | 203 | 423 | 1.97e-43 | 160 |
| MS.gene28561.t1 | AT3G13000 | 32.344 | 337 | 182 | 8 | 269 | 564 | 197 | 528 | 3.18e-43 | 162 |
| MS.gene28561.t1 | AT3G13000 | 32.344 | 337 | 182 | 8 | 269 | 564 | 226 | 557 | 3.67e-43 | 163 |
| MS.gene28561.t1 | AT3G13000 | 32.344 | 337 | 182 | 8 | 269 | 564 | 226 | 557 | 3.67e-43 | 163 |
| MS.gene28561.t1 | AT5G47380 | 29.299 | 314 | 203 | 7 | 253 | 558 | 205 | 507 | 1.86e-39 | 152 |
| MS.gene28561.t1 | AT5G47380 | 29.299 | 314 | 203 | 7 | 253 | 558 | 261 | 563 | 2.62e-39 | 152 |
| MS.gene28561.t1 | AT5G47380 | 27.340 | 406 | 245 | 11 | 174 | 558 | 187 | 563 | 2.82e-39 | 152 |
| MS.gene28561.t1 | AT3G18900 | 32.890 | 301 | 173 | 5 | 262 | 554 | 228 | 507 | 9.19e-35 | 138 |
| MS.gene28561.t1 | AT3G18900 | 32.890 | 301 | 173 | 5 | 262 | 554 | 223 | 502 | 9.75e-35 | 138 |
| MS.gene28561.t1 | AT5G66600 | 30.032 | 313 | 190 | 5 | 265 | 554 | 278 | 584 | 1.35e-34 | 139 |
| MS.gene28561.t1 | AT5G66600 | 30.032 | 313 | 190 | 5 | 265 | 554 | 278 | 584 | 1.35e-34 | 139 |
| MS.gene28561.t1 | AT5G66600 | 30.032 | 313 | 190 | 5 | 265 | 554 | 278 | 584 | 1.35e-34 | 139 |
| MS.gene28561.t1 | AT5G66600 | 30.032 | 313 | 190 | 5 | 265 | 554 | 278 | 584 | 1.35e-34 | 139 |
| MS.gene28561.t1 | AT5G66600 | 30.032 | 313 | 190 | 5 | 265 | 554 | 278 | 584 | 1.35e-34 | 139 |
| MS.gene28561.t1 | AT3G18900 | 32.890 | 301 | 173 | 5 | 262 | 554 | 147 | 426 | 1.40e-34 | 136 |
| MS.gene28561.t1 | AT3G18900 | 32.890 | 301 | 173 | 5 | 262 | 554 | 147 | 426 | 1.40e-34 | 136 |
| MS.gene28561.t1 | AT5G66600 | 30.032 | 313 | 190 | 5 | 265 | 554 | 258 | 564 | 1.49e-34 | 138 |
| MS.gene28561.t1 | AT5G66600 | 30.032 | 313 | 190 | 5 | 265 | 554 | 224 | 530 | 1.90e-34 | 137 |
| MS.gene28561.t1 | AT2G39690 | 40.110 | 182 | 94 | 5 | 269 | 438 | 177 | 355 | 4.60e-33 | 130 |
| MS.gene28561.t1 | AT1G76620 | 27.864 | 323 | 193 | 9 | 269 | 563 | 193 | 503 | 1.92e-31 | 128 |
| MS.gene28561.t1 | AT1G43020 | 34.197 | 193 | 117 | 4 | 357 | 541 | 211 | 401 | 1.44e-26 | 113 |
| MS.gene28561.t1 | AT1G21060 | 27.541 | 305 | 193 | 6 | 267 | 558 | 185 | 474 | 1.63e-24 | 107 |
| MS.gene28561.t1 | AT1G21060 | 27.541 | 305 | 193 | 6 | 267 | 558 | 197 | 486 | 1.71e-24 | 107 |
| MS.gene28561.t1 | AT5G47380 | 26.946 | 334 | 194 | 11 | 174 | 486 | 187 | 491 | 1.19e-23 | 105 |
| MS.gene28561.t1 | AT1G16750 | 32.039 | 206 | 104 | 5 | 270 | 440 | 178 | 382 | 4.69e-23 | 102 |
| MS.gene28561.t1 | AT5G47380 | 27.052 | 329 | 190 | 11 | 174 | 481 | 187 | 486 | 5.38e-23 | 102 |
| MS.gene28561.t1 | AT5G66600 | 30.165 | 242 | 141 | 4 | 265 | 483 | 278 | 514 | 6.52e-23 | 102 |
| MS.gene28561.t1 | AT5G66600 | 30.165 | 242 | 141 | 4 | 265 | 483 | 278 | 514 | 6.52e-23 | 102 |
| MS.gene28561.t1 | AT5G66600 | 30.165 | 242 | 141 | 4 | 265 | 483 | 278 | 514 | 6.52e-23 | 102 |
| MS.gene28561.t1 | AT5G66600 | 30.165 | 242 | 141 | 4 | 265 | 483 | 278 | 514 | 6.52e-23 | 102 |
| MS.gene28561.t1 | AT4G08550 | 28.571 | 217 | 146 | 5 | 343 | 555 | 408 | 619 | 8.34e-18 | 87.4 |
| MS.gene28561.t1 | AT4G08550 | 28.571 | 217 | 146 | 5 | 343 | 555 | 462 | 673 | 9.15e-18 | 87.4 |
| MS.gene28561.t1 | AT3G18900 | 30.435 | 230 | 131 | 5 | 262 | 483 | 228 | 436 | 1.05e-17 | 86.7 |
| MS.gene28561.t1 | AT5G66600 | 29.412 | 187 | 114 | 2 | 265 | 435 | 278 | 462 | 4.61e-17 | 84.7 |
| MS.gene28561.t1 | AT5G66600 | 29.412 | 187 | 114 | 2 | 265 | 435 | 278 | 462 | 4.61e-17 | 84.7 |
| MS.gene28561.t1 | AT5G66600 | 29.412 | 187 | 114 | 2 | 265 | 435 | 278 | 462 | 4.61e-17 | 84.7 |
| MS.gene28561.t1 | AT5G66600 | 29.412 | 187 | 114 | 2 | 265 | 435 | 224 | 408 | 5.48e-17 | 84.0 |
| MS.gene28561.t1 | AT3G11920 | 32.749 | 171 | 111 | 4 | 371 | 539 | 426 | 594 | 1.08e-15 | 80.9 |
| MS.gene28561.t1 | AT3G18900 | 32.203 | 177 | 96 | 4 | 262 | 435 | 228 | 383 | 7.36e-15 | 77.0 |
| MS.gene28561.t1 | AT1G76620 | 25.726 | 241 | 143 | 8 | 269 | 483 | 193 | 423 | 3.78e-13 | 72.0 |
| MS.gene28561.t1 | AT1G43020 | 32.353 | 136 | 83 | 4 | 357 | 486 | 211 | 343 | 3.98e-13 | 71.2 |
Find 100 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTATTTCATCAGGTAAT+TGG | 0.190698 | 8.4:+27234265 | None:intergenic |
| ACAACCATTTCCGGACTTTC+AGG | 0.201826 | 8.4:+27235792 | None:intergenic |
| TTGAGTGGAGATTTCTTTAA+AGG | 0.208758 | 8.4:+27237103 | None:intergenic |
| CGGACCAACTTCTCTTGTTT+TGG | 0.213209 | 8.4:+27236622 | None:intergenic |
| GTGAAAGCAAGAAGCATATT+TGG | 0.230491 | 8.4:-27235403 | MS.gene28561:CDS |
| AATTACTTCTCATGTGGTTT+TGG | 0.235218 | 8.4:+27237410 | None:intergenic |
| AAAGGACCTTGATTCTTTAT+TGG | 0.238431 | 8.4:-27234301 | MS.gene28561:CDS |
| AGATCTTCTGAAACTCTATT+TGG | 0.238770 | 8.4:+27236797 | None:intergenic |
| ATTTCACATAAATTCTTATA+CGG | 0.270278 | 8.4:+27236602 | None:intergenic |
| AAGAATTTATGTGAAATTAA+AGG | 0.277490 | 8.4:-27236596 | MS.gene28561:CDS |
| AAACATTGCATTTGTTGTTC+TGG | 0.321552 | 8.4:+27236556 | None:intergenic |
| ATTAATGCTACAACCATTTC+CGG | 0.323435 | 8.4:+27235783 | None:intergenic |
| CTTTCTGCTAGAAGCACTTC+TGG | 0.331481 | 8.4:+27237306 | None:intergenic |
| TCTAACATATTTGTGAGAAT+TGG | 0.347512 | 8.4:-27236761 | MS.gene28561:CDS |
| AAGAGCATTTACAAGACCTT+TGG | 0.361369 | 8.4:-27238015 | MS.gene28561:CDS |
| CATGGATCAATTAAAGTTGC+AGG | 0.385031 | 8.4:-27237059 | MS.gene28561:intron |
| GCTTGGTTTCTTATTTCATC+AGG | 0.387730 | 8.4:+27234258 | None:intergenic |
| CTTCAAGGCATTTAACTGCT+TGG | 0.390658 | 8.4:+27234241 | None:intergenic |
| ATTATCTGTTGGTGAATTTG+AGG | 0.390667 | 8.4:+27236844 | None:intergenic |
| ACTCACTTTCCCTTCCTTCA+AGG | 0.391301 | 8.4:+27234226 | None:intergenic |
| AGAGCATTTACAAGACCTTT+GGG | 0.393492 | 8.4:-27238014 | MS.gene28561:CDS |
| ATAATCACAGTGGGAGTAAT+GGG | 0.397780 | 8.4:-27237258 | MS.gene28561:CDS |
| ACTTGCTTCTTTGAACTTGA+AGG | 0.419293 | 8.4:-27236259 | MS.gene28561:CDS |
| GATTATTTACAAGCTTCAAT+TGG | 0.420391 | 8.4:-27234387 | MS.gene28561:CDS |
| CAAGCAGTTAAATGCCTTGA+AGG | 0.420884 | 8.4:-27234240 | MS.gene28561:CDS |
| GATACTAATTCCCAAGTTGT+TGG | 0.421968 | 8.4:-27234346 | MS.gene28561:CDS |
| ACCTTGATTCTTTATTGGAC+TGG | 0.422533 | 8.4:-27234296 | MS.gene28561:CDS |
| GATTCTGAACAAATATCATA+AGG | 0.432889 | 8.4:+27236644 | None:intergenic |
| ATTGTGGACTTACAAACTTA+AGG | 0.436584 | 8.4:+27235544 | None:intergenic |
| GTAAAATTCAGGTACCTACT+TGG | 0.436814 | 8.4:-27236285 | MS.gene28561:intron |
| ACTTACAAACTTAAGGTGAT+AGG | 0.449376 | 8.4:+27235551 | None:intergenic |
| TAATTCCCAAGTTGTTGGAT+TGG | 0.451039 | 8.4:-27234341 | MS.gene28561:CDS |
| CTTGCTTCTTTGAACTTGAA+GGG | 0.457672 | 8.4:-27236258 | MS.gene28561:CDS |
| CTTACAAACTTAAGGTGATA+GGG | 0.461257 | 8.4:+27235552 | None:intergenic |
| CAGGAGAAGATGGAAGGAGG+AGG | 0.462824 | 8.4:-27238246 | None:intergenic |
| CTGTGATTATTGACAGTGTC+AGG | 0.464530 | 8.4:+27237271 | None:intergenic |
| CATACCTGAAAGTCCGGAAA+TGG | 0.466334 | 8.4:-27235796 | MS.gene28561:CDS |
| TCTGACACTTTATTATCTGT+TGG | 0.469894 | 8.4:+27236833 | None:intergenic |
| CTGCAACTTTAATTGATCCA+TGG | 0.472815 | 8.4:+27237060 | None:intergenic |
| AAGAAGCAAGTTTCCCAAGT+AGG | 0.475798 | 8.4:+27236271 | None:intergenic |
| ATGGAAGGAGGAGGGAGCAA+AGG | 0.484168 | 8.4:-27238237 | MS.gene28561:CDS |
| CTAACATATGGAGGAAGATA+AGG | 0.489236 | 8.4:+27237972 | None:intergenic |
| GAATCCAAAACAAGAGAAGT+TGG | 0.490044 | 8.4:-27236626 | MS.gene28561:CDS |
| TCTAGCTGAGGTGGCAGTGT+TGG | 0.492182 | 8.4:-27237548 | MS.gene28561:CDS |
| TTCTGGCAAGAGAATTCTGT+GGG | 0.492226 | 8.4:+27237323 | None:intergenic |
| TTTCAGGCAACAATAGTAGT+AGG | 0.492409 | 8.4:-27235624 | MS.gene28561:intron |
| AAGTGAGTCTCTTTCACAAA+TGG | 0.493275 | 8.4:-27234211 | MS.gene28561:intron |
| CAGTTAAATGCCTTGAAGGA+AGG | 0.493380 | 8.4:-27234236 | MS.gene28561:CDS |
| TTGCACTTTCCTGTGGAAGT+TGG | 0.498705 | 8.4:-27235351 | MS.gene28561:CDS |
| GGTTGTAGCATTAATGCAAA+AGG | 0.498874 | 8.4:-27235775 | MS.gene28561:intron |
| AAATAAGACCCAGAAGTTGA+AGG | 0.499068 | 8.4:+27236704 | None:intergenic |
| AGCAAGAAGCATATTTGGAC+TGG | 0.499364 | 8.4:-27235398 | MS.gene28561:CDS |
| ACATGGCATACCTGAAAGTC+CGG | 0.506804 | 8.4:-27235802 | MS.gene28561:CDS |
| GGCAGTGTTGGAAGAAGAAG+TGG | 0.508158 | 8.4:-27237536 | MS.gene28561:CDS |
| ACTGGAATGGTCTGAGCCCT+TGG | 0.511041 | 8.4:-27235380 | MS.gene28561:CDS |
| TGTTGGAAGAAGAAGTGGTT+AGG | 0.511515 | 8.4:-27237531 | MS.gene28561:CDS |
| AATAATCACAGTGGGAGTAA+TGG | 0.514820 | 8.4:-27237259 | MS.gene28561:CDS |
| GGAGATTATCAGAACATGAA+AGG | 0.515426 | 8.4:-27236877 | MS.gene28561:CDS |
| TAAATACCAATCCAACAACT+TGG | 0.518404 | 8.4:+27234335 | None:intergenic |
| CATCTATACAAGAAGAAGGA+AGG | 0.518813 | 8.4:-27237204 | MS.gene28561:CDS |
| GAGATTATCAGAACATGAAA+GGG | 0.519637 | 8.4:-27236876 | MS.gene28561:CDS |
| AGTTAAATGCCTTGAAGGAA+GGG | 0.523554 | 8.4:-27234235 | MS.gene28561:CDS |
| TCCAGTCCAATAAAGAATCA+AGG | 0.524058 | 8.4:+27234295 | None:intergenic |
| ATCTATACAAGAAGAAGGAA+GGG | 0.524855 | 8.4:-27237203 | MS.gene28561:CDS |
| TTCAGGTAGATAAGTTGAAG+AGG | 0.528029 | 8.4:-27238076 | MS.gene28561:intron |
| TAAAATTCAGGTACCTACTT+GGG | 0.539959 | 8.4:-27236284 | MS.gene28561:intron |
| GGAAAGCAGGAGAAGATGGA+AGG | 0.544627 | 8.4:-27238252 | None:intergenic |
| GACATTGGAACTTCTAGCTG+AGG | 0.548247 | 8.4:-27237560 | MS.gene28561:CDS |
| GCTTTGAATTACTTCTCATG+TGG | 0.555149 | 8.4:+27237404 | None:intergenic |
| AAGCAGGAGAAGATGGAAGG+AGG | 0.556298 | 8.4:-27238249 | None:intergenic |
| TGAGCTGATTCATGTTTGAG+TGG | 0.563105 | 8.4:+27237088 | None:intergenic |
| TTCTCATCTATACAAGAAGA+AGG | 0.568329 | 8.4:-27237208 | MS.gene28561:CDS |
| TGTGAGAATTGGTACATCCA+AGG | 0.569116 | 8.4:-27236750 | MS.gene28561:CDS |
| GTAACATTTGCACTTTCCTG+TGG | 0.572823 | 8.4:-27235358 | MS.gene28561:CDS |
| CAAGTTGTGAATTTCAGACA+AGG | 0.573745 | 8.4:-27237499 | MS.gene28561:CDS |
| TCTATACAAGAAGAAGGAAG+GGG | 0.575452 | 8.4:-27237202 | MS.gene28561:CDS |
| GGAAGATAAGGCGGAAGACG+AGG | 0.581353 | 8.4:+27237984 | None:intergenic |
| GAAGCATATTTGGACTGGAA+TGG | 0.585611 | 8.4:-27235393 | MS.gene28561:CDS |
| TGAATCAGCTCAGAAGTCCA+TGG | 0.591207 | 8.4:-27237077 | MS.gene28561:CDS |
| TTATTTCAGCCAATCTAGCA+AGG | 0.592341 | 8.4:-27236687 | MS.gene28561:CDS |
| AGGAGAAGATGGAAGGAGGA+GGG | 0.595319 | 8.4:-27238245 | None:intergenic |
| TGTTCTGGTGAGATCAACAT+TGG | 0.595419 | 8.4:+27236571 | None:intergenic |
| AAATACCAATCCAACAACTT+GGG | 0.609275 | 8.4:+27234336 | None:intergenic |
| AGGTGAAGACCAACTTCCAC+AGG | 0.609752 | 8.4:+27235342 | None:intergenic |
| ATTGGAACTTCTAGCTGAGG+TGG | 0.610303 | 8.4:-27237557 | MS.gene28561:CDS |
| CGATGACTTACTTCAATCTG+TGG | 0.611618 | 8.4:+27236528 | None:intergenic |
| TTACAAACTTAAGGTGATAG+GGG | 0.614980 | 8.4:+27235553 | None:intergenic |
| GGAAAGTGCAAATGTTACCA+AGG | 0.623308 | 8.4:+27235363 | None:intergenic |
| AGAGAGAGACTAACATATGG+AGG | 0.635286 | 8.4:+27237963 | None:intergenic |
| AATTTAATTCAATGACAACA+AGG | 0.640125 | 8.4:-27237351 | MS.gene28561:CDS |
| TGGTAGGCATACTTAGAACA+TGG | 0.651116 | 8.4:-27235819 | MS.gene28561:intron |
| CTGGCAAGAGAATTCTGTGG+GGG | 0.652309 | 8.4:+27237325 | None:intergenic |
| GAAAGTGCAAATGTTACCAA+GGG | 0.655263 | 8.4:+27235364 | None:intergenic |
| CAGGCAACAATAGTAGTAGG+AGG | 0.658457 | 8.4:-27235621 | MS.gene28561:CDS |
| ACACTGTCAATAATCACAGT+GGG | 0.661419 | 8.4:-27237267 | MS.gene28561:CDS |
| CTTCTGGCAAGAGAATTCTG+TGG | 0.665327 | 8.4:+27237322 | None:intergenic |
| ACATATGGAGGAAGATAAGG+CGG | 0.675886 | 8.4:+27237975 | None:intergenic |
| AGACGAGGCAAAGATCCCAA+AGG | 0.692046 | 8.4:+27237999 | None:intergenic |
| GACACTGTCAATAATCACAG+TGG | 0.728310 | 8.4:-27237268 | MS.gene28561:CDS |
| TCTGGCAAGAGAATTCTGTG+GGG | 0.746852 | 8.4:+27237324 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTGGTTTAAATA+AGG | - | chr8.4:27237872-27237891 | MS.gene28561:intron | 10.0% |
| !! | AAGAATTTATGTGAAATTAA+AGG | - | chr8.4:27235739-27235758 | MS.gene28561:intron | 15.0% |
| !! | AGAAATAAAGATAGAAATTA+AGG | + | chr8.4:27236874-27236893 | None:intergenic | 15.0% |
| !! | ATTTCACATAAATTCTTATA+CGG | + | chr8.4:27235736-27235755 | None:intergenic | 15.0% |
| !! | GAAATAAAGATAGAAATTAA+GGG | + | chr8.4:27236873-27236892 | None:intergenic | 15.0% |
| !! | TAAATCACTTATTCATTAAT+TGG | + | chr8.4:27238193-27238212 | None:intergenic | 15.0% |
| !!! | AATTAAATTTTGAGTGAAAT+AGG | + | chr8.4:27237603-27237622 | None:intergenic | 15.0% |
| !!! | TTTGTTTAATCTTTTTGTTT+TGG | - | chr8.4:27235420-27235439 | MS.gene28561:CDS | 15.0% |
| !!! | TTTTCTTTTACTTAAATCAA+TGG | - | chr8.4:27237052-27237071 | MS.gene28561:intron | 15.0% |
| !! | AATAAATATGGATTTGTGTT+AGG | + | chr8.4:27237775-27237794 | None:intergenic | 20.0% |
| !! | AATTAACTGAATGGTAATAA+AGG | - | chr8.4:27236372-27236391 | MS.gene28561:intron | 20.0% |
| !! | AATTTAATTCAATGACAACA+AGG | - | chr8.4:27234984-27235003 | MS.gene28561:intron | 20.0% |
| !! | ATTAAATTATATTGCACTGA+AGG | - | chr8.4:27237841-27237860 | MS.gene28561:intron | 20.0% |
| !! | CGAAGAATTTAGTATATATT+TGG | - | chr8.4:27234403-27234422 | MS.gene28561:CDS | 20.0% |
| !! | TGTCAGTATAATTACAATAT+TGG | + | chr8.4:27235868-27235887 | None:intergenic | 20.0% |
| !! | TTATTACCATTCAGTTAATT+TGG | + | chr8.4:27236372-27236391 | None:intergenic | 20.0% |
| !! | TTGATCCTAAAAGTAAAAAA+TGG | + | chr8.4:27237644-27237663 | None:intergenic | 20.0% |
| !!! | ACAGTACTCTTTTTTTTTTT+TGG | - | chr8.4:27237086-27237105 | MS.gene28561:CDS | 20.0% |
| !!! | ACTTTTGGTATAATTATGTT+TGG | - | chr8.4:27237289-27237308 | MS.gene28561:CDS | 20.0% |
| !!! | AGGAGCAATTTTTTTTTTTT+TGG | - | chr8.4:27237861-27237880 | MS.gene28561:intron | 20.0% |
| !!! | GTTTTCCATTTTTTACTTTT+AGG | - | chr8.4:27237636-27237655 | MS.gene28561:intron | 20.0% |
| !!! | TAATCTTTTGTGTAAAATTC+AGG | - | chr8.4:27236039-27236058 | MS.gene28561:intron | 20.0% |
| !!! | TGATTTTTTTCATCTGAATA+TGG | - | chr8.4:27236663-27236682 | MS.gene28561:CDS | 20.0% |
| !!! | TGGATATTTTTTTTGTACAA+TGG | - | chr8.4:27238224-27238243 | MS.gene28561:CDS | 20.0% |
| !!! | TTGTTTTTGAAGTTGATTTT+TGG | - | chr8.4:27234720-27234739 | MS.gene28561:intron | 20.0% |
| !!! | TTTTAGCTTCAATAAAATCA+CGG | + | chr8.4:27234590-27234609 | None:intergenic | 20.0% |
| ! | AACACATCAAGATAAAATTG+TGG | + | chr8.4:27236810-27236829 | None:intergenic | 25.0% |
| ! | AACCTGAAACTAAAATCATA+AGG | + | chr8.4:27238161-27238180 | None:intergenic | 25.0% |
| ! | ATAAGTGATTTATTAGTGTG+TGG | - | chr8.4:27238201-27238220 | MS.gene28561:CDS | 25.0% |
| ! | ATTGACCTATTACAATTTCA+GGG | + | chr8.4:27237166-27237185 | None:intergenic | 25.0% |
| ! | GATTATTTACAAGCTTCAAT+TGG | - | chr8.4:27237948-27237967 | MS.gene28561:intron | 25.0% |
| ! | GATTCTGAACAAATATCATA+AGG | + | chr8.4:27235694-27235713 | None:intergenic | 25.0% |
| ! | TAATTCGTAAAATTCAAGGA+TGG | - | chr8.4:27237536-27237555 | MS.gene28561:CDS | 25.0% |
| ! | TATGTTTGGTAAAAAAACCT+AGG | - | chr8.4:27237303-27237322 | MS.gene28561:CDS | 25.0% |
| ! | TCTAACATATTTGTGAGAAT+TGG | - | chr8.4:27235574-27235593 | MS.gene28561:CDS | 25.0% |
| ! | TTGCTAATTCGTAAAATTCA+AGG | - | chr8.4:27237532-27237551 | MS.gene28561:CDS | 25.0% |
| ! | TTTAAAAAAACCGAACCAAA+TGG | + | chr8.4:27236423-27236442 | None:intergenic | 25.0% |
| !! | AAATGTAGCTTTTATCTATG+TGG | - | chr8.4:27234609-27234628 | MS.gene28561:intron | 25.0% |
| !! | AGTTTAGATATTTTCTTCAC+TGG | + | chr8.4:27235205-27235224 | None:intergenic | 25.0% |
| !! | GTATTTACTAGATTTTGCAA+AGG | - | chr8.4:27238016-27238035 | MS.gene28561:CDS | 25.0% |
| !! | TTCTTATTTCATCAGGTAAT+TGG | + | chr8.4:27238073-27238092 | None:intergenic | 25.0% |
| !!! | AAATGATTTTGGTTTCCATA+TGG | - | chr8.4:27236496-27236515 | MS.gene28561:intron | 25.0% |
| !!! | GAGTTATTTTGACTTTACTT+CGG | + | chr8.4:27237344-27237363 | None:intergenic | 25.0% |
| !!! | TGTGTTATTGTTTTAGACAT+TGG | - | chr8.4:27234760-27234779 | MS.gene28561:intron | 25.0% |
| !!! | TTTTGGTTTAAATAAGGTGA+GGG | - | chr8.4:27237878-27237897 | MS.gene28561:intron | 25.0% |
| !!! | TTTTTGGTTTAAATAAGGTG+AGG | - | chr8.4:27237877-27237896 | MS.gene28561:intron | 25.0% |
| AAAGGACCTTGATTCTTTAT+TGG | - | chr8.4:27238034-27238053 | MS.gene28561:CDS | 30.0% | |
| AAATACCAATCCAACAACTT+GGG | + | chr8.4:27238002-27238021 | None:intergenic | 30.0% | |
| ACATAACATTGTCTAACAGA+AGG | + | chr8.4:27237198-27237217 | None:intergenic | 30.0% | |
| ACTTACAAACTTAAGGTGAT+AGG | + | chr8.4:27236787-27236806 | None:intergenic | 30.0% | |
| AGGTAATTACACTTATGTGT+CGG | - | chr8.4:27235296-27235315 | MS.gene28561:intron | 30.0% | |
| AGTTTAGCTATTAGACAACA+TGG | + | chr8.4:27237464-27237483 | None:intergenic | 30.0% | |
| ATCAAGAAAAACTTGCATTC+TGG | - | chr8.4:27236108-27236127 | MS.gene28561:intron | 30.0% | |
| ATCTATACAAGAAGAAGGAA+GGG | - | chr8.4:27235132-27235151 | MS.gene28561:intron | 30.0% | |
| ATTAATGCTACAACCATTTC+CGG | + | chr8.4:27236555-27236574 | None:intergenic | 30.0% | |
| ATTGTGGACTTACAAACTTA+AGG | + | chr8.4:27236794-27236813 | None:intergenic | 30.0% | |
| CCACATGCAGAAAATAAATA+TGG | + | chr8.4:27237787-27237806 | None:intergenic | 30.0% | |
| CTTACAAACTTAAGGTGATA+GGG | + | chr8.4:27236786-27236805 | None:intergenic | 30.0% | |
| GAGATTATCAGAACATGAAA+GGG | - | chr8.4:27235459-27235478 | MS.gene28561:intron | 30.0% | |
| GATTGACCTATTACAATTTC+AGG | + | chr8.4:27237167-27237186 | None:intergenic | 30.0% | |
| GGAAATAAAAAGTAACTCCT+AGG | + | chr8.4:27237323-27237342 | None:intergenic | 30.0% | |
| GTACAATGGATAGTTTACAT+AGG | - | chr8.4:27238238-27238257 | MS.gene28561:CDS | 30.0% | |
| TAAAATTCAGGTACCTACTT+GGG | - | chr8.4:27236051-27236070 | MS.gene28561:intron | 30.0% | |
| TAAATACCAATCCAACAACT+TGG | + | chr8.4:27238003-27238022 | None:intergenic | 30.0% | |
| TACATCCAAGGAAAAATTTG+TGG | - | chr8.4:27235597-27235616 | MS.gene28561:CDS | 30.0% | |
| TAGGAAGTTAGGTTAATGAA+TGG | - | chr8.4:27237737-27237756 | MS.gene28561:intron | 30.0% | |
| TCTGACACTTTATTATCTGT+TGG | + | chr8.4:27235505-27235524 | None:intergenic | 30.0% | |
| TGCTACATCTTCATTTAATG+TGG | - | chr8.4:27237434-27237453 | MS.gene28561:CDS | 30.0% | |
| TTACAAACTTAAGGTGATAG+GGG | + | chr8.4:27236785-27236804 | None:intergenic | 30.0% | |
| TTCTCATCTATACAAGAAGA+AGG | - | chr8.4:27235127-27235146 | MS.gene28561:intron | 30.0% | |
| TTGAGTGGAGATTTCTTTAA+AGG | + | chr8.4:27235235-27235254 | None:intergenic | 30.0% | |
| TTTGTCCCTGAAATTGTAAT+AGG | - | chr8.4:27237158-27237177 | MS.gene28561:CDS | 30.0% | |
| ! | AACCTAACTTCCTAAACTTT+TGG | + | chr8.4:27237731-27237750 | None:intergenic | 30.0% |
| ! | AATTACTTCTCATGTGGTTT+TGG | + | chr8.4:27234928-27234947 | None:intergenic | 30.0% |
| ! | AGAATGCAAGTTTTTCTTGA+TGG | + | chr8.4:27236109-27236128 | None:intergenic | 30.0% |
| ! | AGACAAGCTAAGATTTTATC+CGG | + | chr8.4:27236448-27236467 | None:intergenic | 30.0% |
| ! | ATGGTGTGTGATAATTTTGT+TGG | + | chr8.4:27237371-27237390 | None:intergenic | 30.0% |
| ! | ATTATCTGTTGGTGAATTTG+AGG | + | chr8.4:27235494-27235513 | None:intergenic | 30.0% |
| ! | CAATGGACGAAATTAACTTT+TGG | - | chr8.4:27237274-27237293 | MS.gene28561:CDS | 30.0% |
| ! | GAGTCAACACTAAATGATTT+TGG | - | chr8.4:27236485-27236504 | MS.gene28561:intron | 30.0% |
| ! | GTTAATTGCAACATGCTTTT+AGG | + | chr8.4:27236846-27236865 | None:intergenic | 30.0% |
| ! | TGATTCCACAAATTTTTCCT+TGG | + | chr8.4:27235605-27235624 | None:intergenic | 30.0% |
| ! | TGGTGTGTGATAATTTTGTT+GGG | + | chr8.4:27237370-27237389 | None:intergenic | 30.0% |
| ! | TTACCATTCAGTTAATTTGG+CGG | + | chr8.4:27236369-27236388 | None:intergenic | 30.0% |
| !! | AAACATTGCATTTGTTGTTC+TGG | + | chr8.4:27235782-27235801 | None:intergenic | 30.0% |
| !! | AGATCTTCTGAAACTCTATT+TGG | + | chr8.4:27235541-27235560 | None:intergenic | 30.0% |
| !! | CCATATTTATTTTCTGCATG+TGG | - | chr8.4:27237784-27237803 | MS.gene28561:intron | 30.0% |
| !!! | AGCCTTATGATTTTAGTTTC+AGG | - | chr8.4:27238156-27238175 | MS.gene28561:intron | 30.0% |
| !!! | TAGTGATGTTTTGAAAGCTT+TGG | - | chr8.4:27234235-27234254 | MS.gene28561:CDS | 30.0% |
| !!! | TCATCATTTTTTGCAGCTTT+TGG | + | chr8.4:27236911-27236930 | None:intergenic | 30.0% |
| AAAGTTGAGAAACATACTGC+AGG | + | chr8.4:27237016-27237035 | None:intergenic | 35.0% | |
| AAATAAGACCCAGAAGTTGA+AGG | + | chr8.4:27235634-27235653 | None:intergenic | 35.0% | |
| AACACGACACTTTAGATTGA+AGG | + | chr8.4:27235974-27235993 | None:intergenic | 35.0% | |
| AACTGAATGGTAATAAAGGC+AGG | - | chr8.4:27236376-27236395 | MS.gene28561:intron | 35.0% | |
| AAGAGAGAGAGACTAACATA+TGG | + | chr8.4:27234378-27234397 | None:intergenic | 35.0% | |
| AAGTGAGTCTCTTTCACAAA+TGG | - | chr8.4:27238124-27238143 | MS.gene28561:intron | 35.0% | |
| AATAATCACAGTGGGAGTAA+TGG | - | chr8.4:27235076-27235095 | MS.gene28561:intron | 35.0% | |
| ACACTGTCAATAATCACAGT+GGG | - | chr8.4:27235068-27235087 | MS.gene28561:intron | 35.0% | |
| ACAGTGAGTTTGACGAAATT+AGG | - | chr8.4:27234430-27234449 | MS.gene28561:CDS | 35.0% | |
| ACATTGAACTGTAAGTCCTT+TGG | - | chr8.4:27236290-27236309 | MS.gene28561:intron | 35.0% | |
| ACCTTGATTCTTTATTGGAC+TGG | - | chr8.4:27238039-27238058 | MS.gene28561:CDS | 35.0% | |
| ACTTGCTTCTTTGAACTTGA+AGG | - | chr8.4:27236076-27236095 | MS.gene28561:intron | 35.0% | |
| AGAGTGCATGTTTGAATTGA+CGG | + | chr8.4:27234528-27234547 | None:intergenic | 35.0% | |
| AGTGATTTATTAGTGTGTGG+TGG | - | chr8.4:27238204-27238223 | MS.gene28561:CDS | 35.0% | |
| AGTTAAATGCCTTGAAGGAA+GGG | - | chr8.4:27238100-27238119 | MS.gene28561:intron | 35.0% | |
| ATAATCACAGTGGGAGTAAT+GGG | - | chr8.4:27235077-27235096 | MS.gene28561:intron | 35.0% | |
| ATAGACCAAACTCTTTAGTC+CGG | + | chr8.4:27236213-27236232 | None:intergenic | 35.0% | |
| ATTTGGATTCGCGATGAATT+TGG | + | chr8.4:27234640-27234659 | None:intergenic | 35.0% | |
| CAAAAACACCTTCAACTTCT+GGG | - | chr8.4:27235623-27235642 | MS.gene28561:intron | 35.0% | |
| CAAGTTGTGAATTTCAGACA+AGG | - | chr8.4:27234836-27234855 | MS.gene28561:intron | 35.0% | |
| CACACCTATAATTACAATGC+CGG | - | chr8.4:27236191-27236210 | MS.gene28561:intron | 35.0% | |
| CATCTATACAAGAAGAAGGA+AGG | - | chr8.4:27235131-27235150 | MS.gene28561:intron | 35.0% | |
| CATGGATCAATTAAAGTTGC+AGG | - | chr8.4:27235276-27235295 | MS.gene28561:intron | 35.0% | |
| CCAGATCGAGAAGTTTAAAA+CGG | + | chr8.4:27236328-27236347 | None:intergenic | 35.0% | |
| CTAACATATGGAGGAAGATA+AGG | + | chr8.4:27234366-27234385 | None:intergenic | 35.0% | |
| CTCATTGTCAGATGCATATT+TGG | + | chr8.4:27234657-27234676 | None:intergenic | 35.0% | |
| CTGCAACTTTAATTGATCCA+TGG | + | chr8.4:27235278-27235297 | None:intergenic | 35.0% | |
| CTTGCTTCTTTGAACTTGAA+GGG | - | chr8.4:27236077-27236096 | MS.gene28561:intron | 35.0% | |
| GAATCCAAAACAAGAGAAGT+TGG | - | chr8.4:27235709-27235728 | MS.gene28561:intron | 35.0% | |
| GATACTAATTCCCAAGTTGT+TGG | - | chr8.4:27237989-27238008 | MS.gene28561:CDS | 35.0% | |
| GGAGATTATCAGAACATGAA+AGG | - | chr8.4:27235458-27235477 | MS.gene28561:intron | 35.0% | |
| GGTAAATCATTGTGACAGAA+AGG | + | chr8.4:27236172-27236191 | None:intergenic | 35.0% | |
| GGTAATTACACTTATGTGTC+GGG | - | chr8.4:27235297-27235316 | MS.gene28561:intron | 35.0% | |
| GGTTGTAGCATTAATGCAAA+AGG | - | chr8.4:27236560-27236579 | MS.gene28561:CDS | 35.0% | |
| GTAAAATTCAGGTACCTACT+TGG | - | chr8.4:27236050-27236069 | MS.gene28561:intron | 35.0% | |
| GTAATTACACTTATGTGTCG+GGG | - | chr8.4:27235298-27235317 | MS.gene28561:intron | 35.0% | |
| TAATTCCCAAGTTGTTGGAT+TGG | - | chr8.4:27237994-27238013 | MS.gene28561:CDS | 35.0% | |
| TAATTTCGTCCATTGAGATG+TGG | + | chr8.4:27237269-27237288 | None:intergenic | 35.0% | |
| TAGTCCGGCATTGTAATTAT+AGG | + | chr8.4:27236198-27236217 | None:intergenic | 35.0% | |
| TCAAAAACACCTTCAACTTC+TGG | - | chr8.4:27235622-27235641 | MS.gene28561:intron | 35.0% | |
| TCCAGTCCAATAAAGAATCA+AGG | + | chr8.4:27238043-27238062 | None:intergenic | 35.0% | |
| TCGTGTTAGTTACTAACTGT+TGG | - | chr8.4:27235987-27236006 | MS.gene28561:intron | 35.0% | |
| TCTATACAAGAAGAAGGAAG+GGG | - | chr8.4:27235133-27235152 | MS.gene28561:intron | 35.0% | |
| TGAGTTTGACAAAACCAAAG+TGG | - | chr8.4:27234562-27234581 | MS.gene28561:intron | 35.0% | |
| TGCCAAAAGTTTAGGAAGTT+AGG | - | chr8.4:27237726-27237745 | MS.gene28561:intron | 35.0% | |
| TTACAGTTCAATGTCTGGTT+CGG | + | chr8.4:27236284-27236303 | None:intergenic | 35.0% | |
| TTATTTCAGCCAATCTAGCA+AGG | - | chr8.4:27235648-27235667 | MS.gene28561:intron | 35.0% | |
| TTCTAAGTATGCCTACCATA+TGG | + | chr8.4:27236514-27236533 | None:intergenic | 35.0% | |
| TTGAATATAACCAGACGTGT+CGG | - | chr8.4:27235930-27235949 | MS.gene28561:intron | 35.0% | |
| TTGTCACGCATCAATCAAAA+TGG | + | chr8.4:27237498-27237517 | None:intergenic | 35.0% | |
| TTTCAGGCAACAATAGTAGT+AGG | - | chr8.4:27236711-27236730 | MS.gene28561:CDS | 35.0% | |
| ! | AGAGCATTTACAAGACCTTT+GGG | - | chr8.4:27234321-27234340 | MS.gene28561:CDS | 35.0% |
| ! | GAAAGTGCAAATGTTACCAA+GGG | + | chr8.4:27236974-27236993 | None:intergenic | 35.0% |
| ! | GATCATTTTCCTTGCTAGAT+TGG | + | chr8.4:27235660-27235679 | None:intergenic | 35.0% |
| ! | GCTTTGAATTACTTCTCATG+TGG | + | chr8.4:27234934-27234953 | None:intergenic | 35.0% |
| ! | GTGAAAGCAAGAAGCATATT+TGG | - | chr8.4:27236932-27236951 | MS.gene28561:intron | 35.0% |
| ! | GTGTGATAATTTTGTTGGGT+AGG | + | chr8.4:27237366-27237385 | None:intergenic | 35.0% |
| ! | TTCAGGTAGATAAGTTGAAG+AGG | - | chr8.4:27234259-27234278 | MS.gene28561:CDS | 35.0% |
| !! | AAGAGCATTTACAAGACCTT+TGG | - | chr8.4:27234320-27234339 | MS.gene28561:CDS | 35.0% |
| !! | CGTTTTAAACTTCTCGATCT+GGG | - | chr8.4:27236326-27236345 | MS.gene28561:intron | 35.0% |
| !! | CTTAGCTTGTCTAATACTCT+TGG | - | chr8.4:27236456-27236475 | MS.gene28561:intron | 35.0% |
| !! | GATGGATTTGATTTGACTAG+TGG | - | chr8.4:27237554-27237573 | MS.gene28561:CDS | 35.0% |
| !!! | GATTTTGGTTTCCATATGGT+AGG | - | chr8.4:27236500-27236519 | MS.gene28561:intron | 35.0% |
| !!! | GGTTCGGTTTTTTTAAACAC+CGG | - | chr8.4:27236426-27236445 | MS.gene28561:intron | 35.0% |
| !!! | GTTTTGAAAGCTTTGGTTTC+AGG | - | chr8.4:27234242-27234261 | MS.gene28561:CDS | 35.0% |
| !!! | TCATGTGGTTTTGGTCAATA+GGG | + | chr8.4:27234919-27234938 | None:intergenic | 35.0% |
| !!! | TTTTGTTTTGGTTGCATAGC+TGG | - | chr8.4:27235432-27235451 | MS.gene28561:CDS | 35.0% |
| AAGAAGCAAGTTTCCCAAGT+AGG | + | chr8.4:27236067-27236086 | None:intergenic | 40.0% | |
| ACATATGGAGGAAGATAAGG+CGG | + | chr8.4:27234363-27234382 | None:intergenic | 40.0% | |
| ACGGTTGAACTATGATCCAA+AGG | + | chr8.4:27236309-27236328 | None:intergenic | 40.0% | |
| AGAGAGAGACTAACATATGG+AGG | + | chr8.4:27234375-27234394 | None:intergenic | 40.0% | |
| AGGACTTACAGTTCAATGTC+TGG | + | chr8.4:27236289-27236308 | None:intergenic | 40.0% | |
| AGGCAGGTTCAAAGTTCAAT+CGG | - | chr8.4:27236392-27236411 | MS.gene28561:intron | 40.0% | |
| ATCGGTTGAACCATTTGGTT+CGG | - | chr8.4:27236410-27236429 | MS.gene28561:intron | 40.0% | |
| CAGTTAAATGCCTTGAAGGA+AGG | - | chr8.4:27238099-27238118 | MS.gene28561:intron | 40.0% | |
| CCAAACTCTGCCAAAAGTTT+AGG | - | chr8.4:27237718-27237737 | MS.gene28561:intron | 40.0% | |
| CCACATCTCTAGTGACAAAA+TGG | + | chr8.4:27237390-27237409 | None:intergenic | 40.0% | |
| CGATGACTTACTTCAATCTG+TGG | + | chr8.4:27235810-27235829 | None:intergenic | 40.0% | |
| CGGCATTGTAATTATAGGTG+TGG | + | chr8.4:27236193-27236212 | None:intergenic | 40.0% | |
| CTGTGATTATTGACAGTGTC+AGG | + | chr8.4:27235067-27235086 | None:intergenic | 40.0% | |
| CTTCTGACAATGCATGTTTC+AGG | - | chr8.4:27236695-27236714 | MS.gene28561:CDS | 40.0% | |
| GAACCGCCAAATTAACTGAA+TGG | - | chr8.4:27236363-27236382 | MS.gene28561:intron | 40.0% | |
| GACACTGTCAATAATCACAG+TGG | - | chr8.4:27235067-27235086 | MS.gene28561:intron | 40.0% | |
| GGGAGCAAAGGAATGAAAAA+TGG | - | chr8.4:27234110-27234129 | MS.gene28561:intron | 40.0% | |
| GTAACATTTGCACTTTCCTG+TGG | - | chr8.4:27236977-27236996 | MS.gene28561:intron | 40.0% | |
| GTTCAATCGGTTGAACCATT+TGG | - | chr8.4:27236405-27236424 | MS.gene28561:intron | 40.0% | |
| TCTCTTTGCTAGTGTTTCAC+AGG | + | chr8.4:27235845-27235864 | None:intergenic | 40.0% | |
| TGGTAGGCATACTTAGAACA+TGG | - | chr8.4:27236516-27236535 | MS.gene28561:intron | 40.0% | |
| TGTGAGAATTGGTACATCCA+AGG | - | chr8.4:27235585-27235604 | MS.gene28561:CDS | 40.0% | |
| TGTTCTGGTGAGATCAACAT+TGG | + | chr8.4:27235767-27235786 | None:intergenic | 40.0% | |
| TGTTGGAAGAAGAAGTGGTT+AGG | - | chr8.4:27234804-27234823 | MS.gene28561:intron | 40.0% | |
| TTCTGGCAAGAGAATTCTGT+GGG | + | chr8.4:27235015-27235034 | None:intergenic | 40.0% | |
| ! | AGCAAGAAGCATATTTGGAC+TGG | - | chr8.4:27236937-27236956 | MS.gene28561:intron | 40.0% |
| ! | CCATTTTGTCACTAGAGATG+TGG | - | chr8.4:27237387-27237406 | MS.gene28561:CDS | 40.0% |
| ! | CCTAAACTTTTGGCAGAGTT+TGG | + | chr8.4:27237721-27237740 | None:intergenic | 40.0% |
| ! | CTTTAGATTGAAGGTGTGTC+TGG | + | chr8.4:27235965-27235984 | None:intergenic | 40.0% |
| ! | GAAGCATATTTGGACTGGAA+TGG | - | chr8.4:27236942-27236961 | MS.gene28561:intron | 40.0% |
| ! | GGAAAGTGCAAATGTTACCA+AGG | + | chr8.4:27236975-27236994 | None:intergenic | 40.0% |
| ! | TGAGCTGATTCATGTTTGAG+TGG | + | chr8.4:27235250-27235269 | None:intergenic | 40.0% |
| !! | ATAAAATCACGGTGCCACTT+TGG | + | chr8.4:27234579-27234598 | None:intergenic | 40.0% |
| !! | CCGTTTTAAACTTCTCGATC+TGG | - | chr8.4:27236325-27236344 | MS.gene28561:intron | 40.0% |
| !! | TTTTGGTTGCATAGCTGGAA+TGG | - | chr8.4:27235437-27235456 | MS.gene28561:intron | 40.0% |
| !!! | CTCATGTGGTTTTGGTCAAT+AGG | + | chr8.4:27234920-27234939 | None:intergenic | 40.0% |
| ACAACCATTTCCGGACTTTC+AGG | + | chr8.4:27236546-27236565 | None:intergenic | 45.0% | |
| ACATCACTGCCACATCTCAA+TGG | - | chr8.4:27237257-27237276 | MS.gene28561:CDS | 45.0% | |
| ACATGGCATACCTGAAAGTC+CGG | - | chr8.4:27236533-27236552 | MS.gene28561:intron | 45.0% | |
| ACTCACTTTCCCTTCCTTCA+AGG | + | chr8.4:27238112-27238131 | None:intergenic | 45.0% | |
| ATTGAGATGTGGCAGTGATG+TGG | + | chr8.4:27237258-27237277 | None:intergenic | 45.0% | |
| CAATGCCGGACTAAAGAGTT+TGG | - | chr8.4:27236205-27236224 | MS.gene28561:CDS | 45.0% | |
| CAGGCAACAATAGTAGTAGG+AGG | - | chr8.4:27236714-27236733 | MS.gene28561:CDS | 45.0% | |
| CATACCTGAAAGTCCGGAAA+TGG | - | chr8.4:27236539-27236558 | MS.gene28561:CDS | 45.0% | |
| CTTCTGGCAAGAGAATTCTG+TGG | + | chr8.4:27235016-27235035 | None:intergenic | 45.0% | |
| GCACAGACACTCCTTAGATT+AGG | + | chr8.4:27235339-27235358 | None:intergenic | 45.0% | |
| TCTGGCAAGAGAATTCTGTG+GGG | + | chr8.4:27235014-27235033 | None:intergenic | 45.0% | |
| TGAATCAGCTCAGAAGTCCA+TGG | - | chr8.4:27235258-27235277 | MS.gene28561:intron | 45.0% | |
| TTGCACTTTCCTGTGGAAGT+TGG | - | chr8.4:27236984-27237003 | MS.gene28561:intron | 45.0% | |
| ! | ATTGGAACTTCTAGCTGAGG+TGG | - | chr8.4:27234778-27234797 | MS.gene28561:intron | 45.0% |
| ! | GACATTGGAACTTCTAGCTG+AGG | - | chr8.4:27234775-27234794 | MS.gene28561:intron | 45.0% |
| !! | CGGACCAACTTCTCTTGTTT+TGG | + | chr8.4:27235716-27235735 | None:intergenic | 45.0% |
| !! | CTTTCTGCTAGAAGCACTTC+TGG | + | chr8.4:27235032-27235051 | None:intergenic | 45.0% |
| AGACGAGGCAAAGATCCCAA+AGG | + | chr8.4:27234339-27234358 | None:intergenic | 50.0% | |
| AGGTGAAGACCAACTTCCAC+AGG | + | chr8.4:27236996-27237015 | None:intergenic | 50.0% | |
| CACCAGACACGCCTAATCTA+AGG | - | chr8.4:27235325-27235344 | MS.gene28561:intron | 50.0% | |
| CTCCTTAGATTAGGCGTGTC+TGG | + | chr8.4:27235330-27235349 | None:intergenic | 50.0% | |
| CTGGCAAGAGAATTCTGTGG+GGG | + | chr8.4:27235013-27235032 | None:intergenic | 50.0% | |
| TGACACTGACACGCAGACAT+CGG | - | chr8.4:27235883-27235902 | MS.gene28561:intron | 50.0% | |
| ! | ATAACCAGACGTGTCGGTGT+TGG | - | chr8.4:27235936-27235955 | MS.gene28561:intron | 50.0% |
| ! | CTAGAGATGTGGTAGCGATG+TGG | - | chr8.4:27237398-27237417 | MS.gene28561:CDS | 50.0% |
| ! | GGCAGTGTTGGAAGAAGAAG+TGG | - | chr8.4:27234799-27234818 | MS.gene28561:intron | 50.0% |
| ACTGGAATGGTCTGAGCCCT+TGG | - | chr8.4:27236955-27236974 | MS.gene28561:intron | 55.0% | |
| ATGGAAGGAGGAGGGAGCAA+AGG | - | chr8.4:27234098-27234117 | MS.gene28561:intron | 55.0% | |
| GCAGTGATGTGGAGTTCACG+TGG | + | chr8.4:27237247-27237266 | None:intergenic | 55.0% | |
| GGAAGATAAGGCGGAAGACG+AGG | + | chr8.4:27234354-27234373 | None:intergenic | 55.0% | |
| GTAGCGATGTGGAGTCTGCA+CGG | - | chr8.4:27237409-27237428 | MS.gene28561:CDS | 55.0% | |
| TCTAGCTGAGGTGGCAGTGT+TGG | - | chr8.4:27234787-27234806 | MS.gene28561:intron | 55.0% | |
| GTGTCCAACACCGACACGTC+TGG | + | chr8.4:27235943-27235962 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 27234098 | 27238259 | 27234098 | ID=MS.gene28561 |
| chr8.4 | mRNA | 27234098 | 27238259 | 27234098 | ID=MS.gene28561.t1;Parent=MS.gene28561 |
| chr8.4 | exon | 27238182 | 27238259 | 27238182 | ID=MS.gene28561.t1.exon1;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27238182 | 27238259 | 27238182 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27237977 | 27238093 | 27237977 | ID=MS.gene28561.t1.exon2;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27237977 | 27238093 | 27237977 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27237060 | 27237581 | 27237060 | ID=MS.gene28561.t1.exon3;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27237060 | 27237581 | 27237060 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27236539 | 27236906 | 27236539 | ID=MS.gene28561.t1.exon4;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27236539 | 27236906 | 27236539 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27236197 | 27236296 | 27236197 | ID=MS.gene28561.t1.exon5;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27236197 | 27236296 | 27236197 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27235776 | 27235835 | 27235776 | ID=MS.gene28561.t1.exon6;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27235776 | 27235835 | 27235776 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27235557 | 27235640 | 27235557 | ID=MS.gene28561.t1.exon7;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27235557 | 27235640 | 27235557 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27235339 | 27235455 | 27235339 | ID=MS.gene28561.t1.exon8;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27235339 | 27235455 | 27235339 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27234212 | 27234463 | 27234212 | ID=MS.gene28561.t1.exon9;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27234212 | 27234463 | 27234212 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| chr8.4 | exon | 27234098 | 27234106 | 27234098 | ID=MS.gene28561.t1.exon10;Parent=MS.gene28561.t1 |
| chr8.4 | CDS | 27234098 | 27234106 | 27234098 | ID=cds.MS.gene28561.t1;Parent=MS.gene28561.t1 |
| Gene Sequence |
| Protein sequence |
