Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054621.t1 | XP_024633967.1 | 93.3 | 556 | 26 | 1 | 1 | 556 | 26 | 570 | 8.20E-274 | 952.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054621.t1 | A0A396J015 | 93.3 | 556 | 26 | 1 | 1 | 556 | 26 | 570 | 5.9e-274 | 952.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041118 | MS.gene054621 | PPI |
| MS.gene054621 | MS.gene71399 | PPI |
| MS.gene011847 | MS.gene054621 | PPI |
| MS.gene054621 | MS.gene44921 | PPI |
| MS.gene010386 | MS.gene054621 | PPI |
| MS.gene054621 | MS.gene047660 | PPI |
| MS.gene054621 | MS.gene87318 | PPI |
| MS.gene054621 | MS.gene28561 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054621.t1 | MTR_3g101340 | 92.665 | 559 | 26 | 3 | 1 | 556 | 26 | 572 | 0.0 | 1019 |
| MS.gene054621.t1 | MTR_3g101340 | 92.446 | 556 | 26 | 2 | 1 | 556 | 26 | 565 | 0.0 | 1015 |
| MS.gene054621.t1 | MTR_3g101340 | 92.266 | 556 | 26 | 3 | 1 | 556 | 1 | 539 | 0.0 | 1007 |
| MS.gene054621.t1 | MTR_1g021040 | 62.963 | 567 | 162 | 10 | 17 | 556 | 2 | 547 | 0.0 | 603 |
| MS.gene054621.t1 | MTR_5g017790 | 51.548 | 549 | 221 | 14 | 22 | 554 | 25 | 544 | 1.73e-154 | 453 |
| MS.gene054621.t1 | MTR_5g017790 | 51.548 | 549 | 221 | 14 | 22 | 554 | 13 | 532 | 1.73e-154 | 453 |
| MS.gene054621.t1 | MTR_8g079840 | 47.195 | 606 | 235 | 17 | 12 | 554 | 12 | 595 | 2.78e-136 | 409 |
| MS.gene054621.t1 | MTR_5g017790 | 49.246 | 398 | 171 | 12 | 22 | 402 | 25 | 408 | 1.13e-90 | 285 |
| MS.gene054621.t1 | MTR_8g079840 | 44.578 | 498 | 203 | 15 | 12 | 447 | 12 | 498 | 3.21e-90 | 286 |
| MS.gene054621.t1 | MTR_5g079910 | 31.844 | 537 | 319 | 13 | 28 | 554 | 10 | 509 | 8.73e-64 | 217 |
| MS.gene054621.t1 | MTR_4g058015 | 40.278 | 288 | 148 | 8 | 277 | 555 | 418 | 690 | 1.36e-56 | 202 |
| MS.gene054621.t1 | MTR_5g012790 | 26.364 | 550 | 341 | 18 | 27 | 555 | 78 | 584 | 1.85e-36 | 143 |
| MS.gene054621.t1 | MTR_5g018820 | 27.568 | 584 | 320 | 23 | 37 | 555 | 74 | 619 | 3.20e-35 | 140 |
| MS.gene054621.t1 | MTR_8g078760 | 29.143 | 350 | 192 | 9 | 236 | 554 | 296 | 620 | 8.25e-33 | 133 |
| MS.gene054621.t1 | MTR_4g068920 | 24.254 | 536 | 312 | 19 | 84 | 555 | 124 | 629 | 1.40e-27 | 117 |
| MS.gene054621.t1 | MTR_8g078760 | 24.603 | 504 | 294 | 15 | 22 | 456 | 51 | 537 | 7.50e-23 | 102 |
| MS.gene054621.t1 | MTR_5g079910 | 27.171 | 357 | 240 | 8 | 28 | 379 | 10 | 351 | 6.76e-21 | 95.1 |
| MS.gene054621.t1 | MTR_5g061340 | 28.230 | 209 | 120 | 7 | 322 | 523 | 766 | 951 | 5.72e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054621.t1 | AT5G42690 | 50.369 | 542 | 228 | 14 | 18 | 555 | 8 | 512 | 2.50e-143 | 424 |
| MS.gene054621.t1 | AT5G42690 | 50.369 | 542 | 228 | 14 | 18 | 555 | 35 | 539 | 9.05e-143 | 423 |
| MS.gene054621.t1 | AT5G42690 | 50.369 | 542 | 228 | 14 | 18 | 555 | 35 | 539 | 9.05e-143 | 423 |
| MS.gene054621.t1 | AT5G42690 | 50.276 | 543 | 226 | 15 | 18 | 555 | 35 | 538 | 7.81e-142 | 421 |
| MS.gene054621.t1 | AT5G42690 | 51.158 | 518 | 212 | 14 | 42 | 555 | 7 | 487 | 2.10e-137 | 407 |
| MS.gene054621.t1 | AT4G37080 | 44.463 | 605 | 235 | 16 | 15 | 554 | 40 | 608 | 1.01e-133 | 402 |
| MS.gene054621.t1 | AT4G37080 | 44.463 | 605 | 235 | 16 | 15 | 554 | 40 | 608 | 1.01e-133 | 402 |
| MS.gene054621.t1 | AT4G37080 | 44.463 | 605 | 235 | 16 | 15 | 554 | 27 | 595 | 1.08e-133 | 402 |
| MS.gene054621.t1 | AT4G37080 | 42.650 | 483 | 194 | 13 | 28 | 447 | 49 | 511 | 1.07e-88 | 283 |
| MS.gene054621.t1 | AT2G39690 | 39.244 | 344 | 165 | 9 | 236 | 555 | 94 | 417 | 2.44e-61 | 208 |
| MS.gene054621.t1 | AT2G39690 | 39.244 | 344 | 165 | 9 | 236 | 555 | 175 | 498 | 1.27e-60 | 209 |
| MS.gene054621.t1 | AT2G39690 | 39.244 | 344 | 165 | 9 | 236 | 555 | 201 | 524 | 1.72e-60 | 209 |
| MS.gene054621.t1 | AT2G39690 | 38.953 | 344 | 165 | 9 | 236 | 555 | 175 | 497 | 5.93e-60 | 207 |
| MS.gene054621.t1 | AT2G39690 | 38.953 | 344 | 165 | 9 | 236 | 555 | 201 | 523 | 7.69e-60 | 207 |
| MS.gene054621.t1 | AT3G12540 | 29.946 | 551 | 323 | 15 | 32 | 555 | 57 | 571 | 1.69e-54 | 194 |
| MS.gene054621.t1 | AT3G12540 | 29.944 | 531 | 301 | 16 | 60 | 555 | 10 | 504 | 2.50e-53 | 189 |
| MS.gene054621.t1 | AT5G60720 | 34.492 | 374 | 166 | 14 | 238 | 555 | 340 | 690 | 2.48e-51 | 187 |
| MS.gene054621.t1 | AT1G16750 | 27.605 | 547 | 327 | 17 | 27 | 554 | 31 | 527 | 3.41e-39 | 150 |
| MS.gene054621.t1 | AT5G47380 | 26.748 | 572 | 351 | 18 | 4 | 555 | 8 | 531 | 1.61e-38 | 149 |
| MS.gene054621.t1 | AT5G47380 | 26.748 | 572 | 351 | 18 | 4 | 555 | 64 | 587 | 3.38e-38 | 149 |
| MS.gene054621.t1 | AT5G47380 | 26.748 | 572 | 351 | 18 | 4 | 555 | 64 | 587 | 3.55e-38 | 149 |
| MS.gene054621.t1 | AT3G13000 | 28.954 | 373 | 189 | 13 | 236 | 554 | 224 | 574 | 1.43e-36 | 144 |
| MS.gene054621.t1 | AT3G13000 | 28.954 | 373 | 189 | 13 | 236 | 554 | 224 | 574 | 1.43e-36 | 144 |
| MS.gene054621.t1 | AT3G13000 | 28.954 | 373 | 189 | 13 | 236 | 554 | 195 | 545 | 1.54e-36 | 143 |
| MS.gene054621.t1 | AT2G39690 | 37.339 | 233 | 116 | 5 | 236 | 447 | 201 | 424 | 4.14e-35 | 137 |
| MS.gene054621.t1 | AT2G39690 | 36.910 | 233 | 116 | 5 | 236 | 447 | 201 | 423 | 1.52e-34 | 135 |
| MS.gene054621.t1 | AT5G66600 | 25.614 | 570 | 338 | 19 | 37 | 554 | 19 | 554 | 3.91e-34 | 136 |
| MS.gene054621.t1 | AT5G66600 | 25.614 | 570 | 338 | 19 | 37 | 554 | 53 | 588 | 5.85e-34 | 136 |
| MS.gene054621.t1 | AT5G66600 | 25.614 | 570 | 338 | 19 | 37 | 554 | 73 | 608 | 6.17e-34 | 136 |
| MS.gene054621.t1 | AT5G66600 | 25.614 | 570 | 338 | 19 | 37 | 554 | 73 | 608 | 6.17e-34 | 136 |
| MS.gene054621.t1 | AT5G66600 | 25.614 | 570 | 338 | 19 | 37 | 554 | 73 | 608 | 6.17e-34 | 136 |
| MS.gene054621.t1 | AT5G66600 | 25.614 | 570 | 338 | 19 | 37 | 554 | 73 | 608 | 6.17e-34 | 136 |
| MS.gene054621.t1 | AT5G66600 | 25.614 | 570 | 338 | 19 | 37 | 554 | 73 | 608 | 6.17e-34 | 136 |
| MS.gene054621.t1 | AT2G23700 | 30.114 | 352 | 179 | 11 | 237 | 555 | 385 | 702 | 3.70e-32 | 132 |
| MS.gene054621.t1 | AT3G18900 | 30.357 | 336 | 178 | 13 | 236 | 554 | 234 | 530 | 2.63e-26 | 113 |
| MS.gene054621.t1 | AT3G18900 | 30.357 | 336 | 178 | 13 | 236 | 554 | 229 | 525 | 3.61e-26 | 112 |
| MS.gene054621.t1 | AT3G18900 | 30.357 | 336 | 178 | 13 | 236 | 554 | 153 | 449 | 4.52e-26 | 111 |
| MS.gene054621.t1 | AT3G18900 | 30.357 | 336 | 178 | 13 | 236 | 554 | 153 | 449 | 4.52e-26 | 111 |
| MS.gene054621.t1 | AT2G39690 | 36.264 | 182 | 94 | 4 | 236 | 396 | 175 | 355 | 1.55e-25 | 108 |
| MS.gene054621.t1 | AT5G47380 | 26.609 | 466 | 287 | 15 | 4 | 451 | 64 | 492 | 1.79e-25 | 110 |
| MS.gene054621.t1 | AT5G47380 | 26.739 | 460 | 282 | 15 | 4 | 445 | 64 | 486 | 6.35e-25 | 108 |
| MS.gene054621.t1 | AT1G76620 | 29.918 | 244 | 152 | 5 | 314 | 555 | 291 | 517 | 7.37e-25 | 108 |
| MS.gene054621.t1 | AT1G43020 | 30.675 | 326 | 176 | 15 | 237 | 554 | 151 | 434 | 2.36e-23 | 103 |
| MS.gene054621.t1 | AT5G66600 | 25.910 | 467 | 273 | 16 | 37 | 451 | 73 | 518 | 3.16e-22 | 100 |
| MS.gene054621.t1 | AT5G66600 | 25.910 | 467 | 273 | 16 | 37 | 451 | 73 | 518 | 3.16e-22 | 100 |
| MS.gene054621.t1 | AT5G66600 | 25.910 | 467 | 273 | 16 | 37 | 451 | 73 | 518 | 3.16e-22 | 100 |
| MS.gene054621.t1 | AT5G66600 | 25.910 | 467 | 273 | 16 | 37 | 451 | 73 | 518 | 3.16e-22 | 100 |
| MS.gene054621.t1 | AT1G21060 | 26.647 | 334 | 201 | 11 | 237 | 554 | 186 | 491 | 6.68e-22 | 99.8 |
| MS.gene054621.t1 | AT1G21060 | 26.727 | 333 | 200 | 11 | 238 | 554 | 199 | 503 | 8.75e-22 | 99.4 |
| MS.gene054621.t1 | AT1G16750 | 25.974 | 385 | 239 | 11 | 27 | 398 | 31 | 382 | 8.23e-18 | 86.3 |
| MS.gene054621.t1 | AT5G66600 | 25.432 | 405 | 239 | 14 | 37 | 393 | 19 | 408 | 2.14e-16 | 82.4 |
| MS.gene054621.t1 | AT5G66600 | 25.432 | 405 | 239 | 14 | 37 | 393 | 73 | 462 | 3.60e-16 | 81.6 |
| MS.gene054621.t1 | AT5G66600 | 25.432 | 405 | 239 | 14 | 37 | 393 | 73 | 462 | 3.60e-16 | 81.6 |
| MS.gene054621.t1 | AT5G66600 | 25.432 | 405 | 239 | 14 | 37 | 393 | 73 | 462 | 3.60e-16 | 81.6 |
| MS.gene054621.t1 | AT3G18900 | 30.493 | 223 | 124 | 7 | 236 | 447 | 234 | 436 | 3.91e-16 | 81.6 |
| MS.gene054621.t1 | AT1G43020 | 33.645 | 214 | 112 | 10 | 237 | 445 | 151 | 339 | 1.79e-15 | 78.6 |
| MS.gene054621.t1 | AT3G18900 | 34.146 | 164 | 88 | 5 | 236 | 393 | 234 | 383 | 3.60e-14 | 75.1 |
| MS.gene054621.t1 | AT4G08550 | 26.943 | 193 | 117 | 4 | 322 | 510 | 428 | 600 | 1.94e-13 | 73.6 |
| MS.gene054621.t1 | AT4G08550 | 26.943 | 193 | 117 | 4 | 322 | 510 | 482 | 654 | 2.02e-13 | 73.6 |
| MS.gene054621.t1 | AT1G76620 | 31.111 | 135 | 90 | 2 | 314 | 447 | 291 | 423 | 6.21e-12 | 68.2 |
Find 83 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATGGTATCTTGGAATT+TGG | 0.102319 | 3.4:-89250188 | MS.gene054621:CDS |
| CAAATGCTCCAGTTTCATTT+TGG | 0.176964 | 3.4:+89251399 | None:intergenic |
| TCCCTTGTTCACTTGGTAAT+TGG | 0.180237 | 3.4:+89248491 | None:intergenic |
| CAAACAGATCACATTATTAA+AGG | 0.209397 | 3.4:-89249256 | MS.gene054621:CDS |
| ACCAAGAGAAGCTTGCATTT+TGG | 0.224784 | 3.4:-89249907 | MS.gene054621:CDS |
| TCCAAATGATAGTACAAAAT+TGG | 0.226640 | 3.4:-89251350 | MS.gene054621:CDS |
| TTTCAGGCTTTCATAGAAAA+TGG | 0.244617 | 3.4:-89249592 | MS.gene054621:intron |
| GAATGAGTACACCAACTTTC+AGG | 0.255222 | 3.4:-89250256 | MS.gene054621:CDS |
| CTTACATATTTCCAGTGATA+TGG | 0.276394 | 3.4:+89249369 | None:intergenic |
| AGCCTGTAAGTATTCTCTTT+TGG | 0.289352 | 3.4:+89248618 | None:intergenic |
| CTTTAATAATGTGATCTGTT+TGG | 0.311782 | 3.4:+89249257 | None:intergenic |
| CTTGCACATAATTGCTTGTA+TGG | 0.312423 | 3.4:+89250149 | None:intergenic |
| TACCTAAAACTAAACTTATA+AGG | 0.317728 | 3.4:+89248403 | None:intergenic |
| GGCATAAGAAATGCTGTTAA+AGG | 0.322385 | 3.4:-89252009 | MS.gene054621:CDS |
| AAATACCAATCTAACATCTT+TGG | 0.326581 | 3.4:+89248562 | None:intergenic |
| TGCCATTTGGCCTTTACATA+TGG | 0.329071 | 3.4:+89250970 | None:intergenic |
| ATCAAGCAAAGACAGAAAAT+TGG | 0.331031 | 3.4:-89251977 | MS.gene054621:CDS |
| CCTTAAAATGCAGTGTTCTA+TGG | 0.336704 | 3.4:+89249395 | None:intergenic |
| CAAAATGAAACTGGAGCATT+TGG | 0.336998 | 3.4:-89251398 | MS.gene054621:CDS |
| AAGAGCTTTGAATAGGCCTT+TGG | 0.355706 | 3.4:-89251793 | MS.gene054621:CDS |
| GAATTTGGAAAGAGAGATAT+TGG | 0.357324 | 3.4:-89250173 | MS.gene054621:CDS |
| ATGACAATAAGAAGCACTTA+TGG | 0.360141 | 3.4:-89249216 | MS.gene054621:CDS |
| TGCTGATTCATGATGAGATT+TGG | 0.376454 | 3.4:-89248696 | MS.gene054621:CDS |
| GCTTCTTTCCCTTGTTCACT+TGG | 0.383608 | 3.4:+89248484 | None:intergenic |
| GTCATCCTCCAAAATGAAAC+TGG | 0.383847 | 3.4:-89251407 | MS.gene054621:CDS |
| TGATTTCTTACTTCAGCAAT+TGG | 0.390825 | 3.4:+89250365 | None:intergenic |
| TTGCTCTCTCTTGTGGAACT+TGG | 0.395357 | 3.4:-89249164 | MS.gene054621:CDS |
| TTTCGATCCTTATGGTATCT+TGG | 0.397308 | 3.4:-89250195 | MS.gene054621:CDS |
| CTTGTTCACTTGGTAATTGG+AGG | 0.401273 | 3.4:+89248494 | None:intergenic |
| TGTAGTGATTTATTGTCAAC+TGG | 0.403736 | 3.4:+89250926 | None:intergenic |
| TCCAAAATGCAAGCTTCTCT+TGG | 0.407594 | 3.4:+89249906 | None:intergenic |
| AGCCAAAAGAGAATACTTAC+AGG | 0.418978 | 3.4:-89248620 | MS.gene054621:CDS |
| AATTCCTCAAAACTCTCAAA+AGG | 0.420571 | 3.4:-89252031 | MS.gene054621:CDS |
| CATTGGAAAGAGCTTTGAAT+AGG | 0.428590 | 3.4:-89251800 | MS.gene054621:CDS |
| CAAGCTTCTCTTGGTGGTTG+AGG | 0.428663 | 3.4:+89249915 | None:intergenic |
| AGGCCTAAAACAACTCTTCC+TGG | 0.431097 | 3.4:-89251304 | MS.gene054621:intron |
| GTCACATTTGCTCTCTCTTG+TGG | 0.432883 | 3.4:-89249171 | MS.gene054621:CDS |
| GAATACTTACAGGCTGCAAT+TGG | 0.433643 | 3.4:-89248610 | MS.gene054621:CDS |
| CCAAATTCCAAGATACCATA+AGG | 0.433856 | 3.4:+89250188 | None:intergenic |
| AGAGCTTTGAATAGGCCTTT+GGG | 0.434744 | 3.4:-89251792 | MS.gene054621:CDS |
| TTATTCCAAAGATGTTAGAT+TGG | 0.438738 | 3.4:-89248567 | MS.gene054621:CDS |
| CATACTAGAAAGTTCTGAAA+TGG | 0.461883 | 3.4:-89249569 | MS.gene054621:CDS |
| CTTTGCAGCAGCAGGAACTA+AGG | 0.466302 | 3.4:-89250400 | MS.gene054621:intron |
| TCTCCTTGTGGAGTTTCTTG+TGG | 0.467052 | 3.4:+89250338 | None:intergenic |
| ATCCATATGTAAAGGCCAAA+TGG | 0.476033 | 3.4:-89250972 | MS.gene054621:CDS |
| AATAGTTAGGCTTGAAGAGA+AGG | 0.476326 | 3.4:-89251473 | MS.gene054621:CDS |
| AAAATGCAAGCTTCTCTTGG+TGG | 0.481113 | 3.4:+89249909 | None:intergenic |
| AGTCTTTGTTTCTACTACAT+CGG | 0.483239 | 3.4:-89250088 | MS.gene054621:CDS |
| CTAACATAGGGAGGGAGATA+AGG | 0.484013 | 3.4:+89251750 | None:intergenic |
| TGATGAGATTTGGCCAATGC+AGG | 0.485017 | 3.4:-89248686 | MS.gene054621:CDS |
| AGAGAGAGCAAATGTGACTA+GGG | 0.497407 | 3.4:+89249176 | None:intergenic |
| GTTTATTGAAACTGAAGTCA+TGG | 0.501719 | 3.4:+89252065 | None:intergenic |
| TGCTAGAAGAAGAAATAGTT+AGG | 0.501808 | 3.4:-89251486 | MS.gene054621:CDS |
| ACTTAGAATCATTGCTAGAC+TGG | 0.504652 | 3.4:-89248522 | MS.gene054621:CDS |
| TTTGGACTTTCATCTCCTTG+TGG | 0.509477 | 3.4:+89250326 | None:intergenic |
| CTCCAATTACCAAGTGAACA+AGG | 0.511766 | 3.4:-89248493 | MS.gene054621:CDS |
| ATTCCTCAAAACTCTCAAAA+GGG | 0.516730 | 3.4:-89252030 | MS.gene054621:CDS |
| AGCAAGAAATCCATATGTAA+AGG | 0.522417 | 3.4:-89250980 | MS.gene054621:CDS |
| AAGAGAGAGCAAATGTGACT+AGG | 0.525788 | 3.4:+89249175 | None:intergenic |
| TTCAACTTTCACAGGTGGAT+AGG | 0.535430 | 3.4:-89251863 | MS.gene054621:intron |
| GCATTTGGAAGCTGCTTCTG+TGG | 0.539751 | 3.4:-89251383 | MS.gene054621:CDS |
| ATTCAGGCAACAATAAATGT+AGG | 0.542703 | 3.4:-89249441 | MS.gene054621:intron |
| ATAGGTTGAAGAAGAAGCTT+AGG | 0.543202 | 3.4:-89251845 | MS.gene054621:CDS |
| AATAAGAAGCACTTATGGAC+TGG | 0.543742 | 3.4:-89249211 | MS.gene054621:CDS |
| GGAGAACATTCACAAGGCAT+TGG | 0.546595 | 3.4:-89251817 | MS.gene054621:CDS |
| TATGGTTGTGGCATTTAACA+AGG | 0.552219 | 3.4:+89249413 | None:intergenic |
| AAAGACTTAGCAGTATGTGT+TGG | 0.556022 | 3.4:+89250104 | None:intergenic |
| AATGCAGTGTTCTATGGTTG+TGG | 0.557697 | 3.4:+89249401 | None:intergenic |
| GGGAGATAAGGAGGAAGACG+AGG | 0.568888 | 3.4:+89251762 | None:intergenic |
| CACAGCATCACATATTGAGA+AGG | 0.574850 | 3.4:-89248653 | MS.gene054621:CDS |
| GCTAGGACTTGTGGCTGAAG+TGG | 0.583652 | 3.4:-89251512 | MS.gene054621:CDS |
| GAAGAAGAAGCTTAGGCATG+AGG | 0.586915 | 3.4:-89251838 | MS.gene054621:CDS |
| ACATAGGGAGGGAGATAAGG+AGG | 0.588280 | 3.4:+89251753 | None:intergenic |
| ACTCTAGACGCTAGGACTTG+TGG | 0.590126 | 3.4:-89251521 | MS.gene054621:intron |
| TCCAATTACCAAGTGAACAA+GGG | 0.608450 | 3.4:-89248492 | MS.gene054621:CDS |
| GTGTAAACTCTAACCTGCAT+TGG | 0.610022 | 3.4:+89248673 | None:intergenic |
| ATAAGAAATGCTGTTAAAGG+TGG | 0.612023 | 3.4:-89252006 | MS.gene054621:CDS |
| CAGGCAACAATAAATGTAGG+TGG | 0.618980 | 3.4:-89249438 | MS.gene054621:CDS |
| AGACGAGGCAAAGCTCCCAA+AGG | 0.660975 | 3.4:+89251777 | None:intergenic |
| GGTTGTTGCATTGATGCAGA+AGG | 0.661395 | 3.4:-89249548 | MS.gene054621:intron |
| GAGAGAGCAAATGTGACTAG+GGG | 0.692122 | 3.4:+89249177 | None:intergenic |
| CGTCCACAAGAAACTCCACA+AGG | 0.707050 | 3.4:-89250341 | MS.gene054621:CDS |
| GCATGAGGAGAACATTCACA+AGG | 0.707385 | 3.4:-89251823 | MS.gene054621:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAACAATTAATTAATATA+AGG | + | chr3.4:89250450-89250469 | None:intergenic | 10.0% |
| !!! | CAATTTTCAATATTTTATAA+AGG | - | chr3.4:89251346-89251365 | MS.gene054621:CDS | 10.0% |
| !! | AAAATACATCATAATTATGT+TGG | - | chr3.4:89249757-89249776 | MS.gene054621:intron | 15.0% |
| !! | ATAAAGAGAAAAAATAGAAA+GGG | + | chr3.4:89248738-89248757 | None:intergenic | 15.0% |
| !! | TAAATAAACTAACAAGTTAT+TGG | - | chr3.4:89251623-89251642 | MS.gene054621:intron | 15.0% |
| !! | TACATAATTGATTATTTCAT+TGG | + | chr3.4:89249184-89249203 | None:intergenic | 15.0% |
| !!! | ATATTTTCAGAGATTATATT+TGG | + | chr3.4:89250145-89250164 | None:intergenic | 15.0% |
| !!! | TTTACATTGATAATTATTTG+AGG | - | chr3.4:89248801-89248820 | MS.gene054621:intron | 15.0% |
| !!! | TTTTTGCTTATTAATTAATG+CGG | - | chr3.4:89250976-89250995 | MS.gene054621:CDS | 15.0% |
| !! | AAAAATTTCTCAAAACATAG+TGG | - | chr3.4:89249825-89249844 | MS.gene054621:intron | 20.0% |
| !! | AAATCTAAAAACTGTATTGA+AGG | - | chr3.4:89250223-89250242 | MS.gene054621:CDS | 20.0% |
| !! | CAAGACTATAATAATATTGA+AGG | + | chr3.4:89248871-89248890 | None:intergenic | 20.0% |
| !! | GATAAAGAGAAAAAATAGAA+AGG | + | chr3.4:89248739-89248758 | None:intergenic | 20.0% |
| !! | GTTTATTTACAAAACAATAG+TGG | + | chr3.4:89251612-89251631 | None:intergenic | 20.0% |
| !! | TACCTAAAACTAAACTTATA+AGG | + | chr3.4:89252050-89252069 | None:intergenic | 20.0% |
| !! | TGAAATAGCTTAATCATAAT+CGG | + | chr3.4:89249212-89249231 | None:intergenic | 20.0% |
| !! | TTAAATGTAATCATATGTGT+CGG | - | chr3.4:89248827-89248846 | MS.gene054621:intron | 20.0% |
| !! | TTGAAATGTGCATTAAAAAT+AGG | + | chr3.4:89251708-89251727 | None:intergenic | 20.0% |
| !! | TTTATCTTGAATATCAGTAA+TGG | - | chr3.4:89250670-89250689 | MS.gene054621:intron | 20.0% |
| !!! | ATACAGTTTTTAGATTTTAG+AGG | + | chr3.4:89250220-89250239 | None:intergenic | 20.0% |
| !!! | TACAACATACTTTTAAATTG+TGG | - | chr3.4:89249632-89249651 | MS.gene054621:intron | 20.0% |
| !!! | TGACCTACTTTAAAAATATT+AGG | - | chr3.4:89251507-89251526 | MS.gene054621:CDS | 20.0% |
| ! | AAATACCAATCTAACATCTT+TGG | + | chr3.4:89251891-89251910 | None:intergenic | 25.0% |
| ! | ACATAATGTACTATAGATCA+CGG | + | chr3.4:89249351-89249370 | None:intergenic | 25.0% |
| ! | ACATTATGTGACAAGAATAT+TGG | - | chr3.4:89249362-89249381 | MS.gene054621:intron | 25.0% |
| ! | AGAAAAAGCTACATTTGAAA+AGG | + | chr3.4:89251119-89251138 | None:intergenic | 25.0% |
| ! | CAAACAGATCACATTATTAA+AGG | - | chr3.4:89251194-89251213 | MS.gene054621:intron | 25.0% |
| ! | CTTTAATAATGTGATCTGTT+TGG | + | chr3.4:89251196-89251215 | None:intergenic | 25.0% |
| ! | TAAAAACTGTATTGAAGGAA+CGG | - | chr3.4:89250228-89250247 | MS.gene054621:CDS | 25.0% |
| ! | TAGTTGAGTATGTACATATT+TGG | - | chr3.4:89249232-89249251 | MS.gene054621:CDS | 25.0% |
| ! | TCCAAATGATAGTACAAAAT+TGG | - | chr3.4:89249100-89249119 | MS.gene054621:intron | 25.0% |
| ! | TTATTCCAAAGATGTTAGAT+TGG | - | chr3.4:89251883-89251902 | MS.gene054621:intron | 25.0% |
| !! | ACTTTAAAAATATTAGGCCT+GGG | - | chr3.4:89251513-89251532 | MS.gene054621:CDS | 25.0% |
| !! | AGAGTGATTTTACTAACATA+GGG | + | chr3.4:89248715-89248734 | None:intergenic | 25.0% |
| !! | ATTTTTACAAATTGTGAGTG+AGG | + | chr3.4:89252023-89252042 | None:intergenic | 25.0% |
| !! | TAATTGGAATTTTTGCCATT+TGG | + | chr3.4:89249496-89249515 | None:intergenic | 25.0% |
| !! | TACTTTAAAAATATTAGGCC+TGG | - | chr3.4:89251512-89251531 | MS.gene054621:CDS | 25.0% |
| !! | TCAACTGGAATTTTCTTAAT+TGG | + | chr3.4:89249512-89249531 | None:intergenic | 25.0% |
| !! | TCCAATTTTGTACTATCATT+TGG | + | chr3.4:89249104-89249123 | None:intergenic | 25.0% |
| !!! | AGGCCTAATATTTTTAAAGT+AGG | + | chr3.4:89251513-89251532 | None:intergenic | 25.0% |
| !!! | TCTTTTCTTTGTTTATCATC+TGG | + | chr3.4:89249419-89249438 | None:intergenic | 25.0% |
| !!! | TGAATTTTTTCAACTTTCAC+AGG | - | chr3.4:89248579-89248598 | MS.gene054621:CDS | 25.0% |
| !!! | TGAGAAATTTTTTTTGTGAG+TGG | + | chr3.4:89249817-89249836 | None:intergenic | 25.0% |
| !!! | TGCCTTATAAGTTTAGTTTT+AGG | - | chr3.4:89252045-89252064 | MS.gene054621:CDS | 25.0% |
| AAAAGAATCCTGCATATTTC+AGG | + | chr3.4:89250485-89250504 | None:intergenic | 30.0% | |
| AATTCCTCAAAACTCTCAAA+AGG | - | chr3.4:89248419-89248438 | MS.gene054621:CDS | 30.0% | |
| AATTTCTCAAAACATAGTGG+AGG | - | chr3.4:89249828-89249847 | MS.gene054621:intron | 30.0% | |
| AGCAAGAAATCCATATGTAA+AGG | - | chr3.4:89249470-89249489 | MS.gene054621:intron | 30.0% | |
| ATAAGAAATGCTGTTAAAGG+TGG | - | chr3.4:89248444-89248463 | MS.gene054621:CDS | 30.0% | |
| ATCAAGCAAAGACAGAAAAT+TGG | - | chr3.4:89248473-89248492 | MS.gene054621:CDS | 30.0% | |
| ATGCTGTTATATGCTAAACT+TGG | + | chr3.4:89250951-89250970 | None:intergenic | 30.0% | |
| ATTCAGGCAACAATAAATGT+AGG | - | chr3.4:89251009-89251028 | MS.gene054621:CDS | 30.0% | |
| ATTCCTCAAAACTCTCAAAA+GGG | - | chr3.4:89248420-89248439 | MS.gene054621:CDS | 30.0% | |
| CTTACATATTTCCAGTGATA+TGG | + | chr3.4:89251084-89251103 | None:intergenic | 30.0% | |
| GAATTTGGAAAGAGAGATAT+TGG | - | chr3.4:89250277-89250296 | MS.gene054621:CDS | 30.0% | |
| GATCATTCATGTTCTCTAAA+TGG | + | chr3.4:89251686-89251705 | None:intergenic | 30.0% | |
| GATTACTATCAATGTCGATA+TGG | + | chr3.4:89250713-89250732 | None:intergenic | 30.0% | |
| GCAATTAATCAGTCTTTCAA+TGG | + | chr3.4:89251557-89251576 | None:intergenic | 30.0% | |
| TAGATGTACCTCAATTACTA+TGG | - | chr3.4:89251389-89251408 | MS.gene054621:CDS | 30.0% | |
| TATCATCTGGTAAGACAAAA+AGG | + | chr3.4:89249406-89249425 | None:intergenic | 30.0% | |
| TCTAATTTCCTGAAATATGC+AGG | - | chr3.4:89250474-89250493 | MS.gene054621:intron | 30.0% | |
| TGATTTCTTACTTCAGCAAT+TGG | + | chr3.4:89250088-89250107 | None:intergenic | 30.0% | |
| TGCTAGAAGAAGAAATAGTT+AGG | - | chr3.4:89248964-89248983 | MS.gene054621:intron | 30.0% | |
| TGTAGTGATTTATTGTCAAC+TGG | + | chr3.4:89249527-89249546 | None:intergenic | 30.0% | |
| TTAAAAAAACTCTAGACGCT+AGG | - | chr3.4:89248921-89248940 | MS.gene054621:intron | 30.0% | |
| TTTCAGGCTTTCATAGAAAA+TGG | - | chr3.4:89250858-89250877 | MS.gene054621:intron | 30.0% | |
| ! | AAGAGAAGGTCTTACATTTT+AGG | - | chr3.4:89248991-89249010 | MS.gene054621:intron | 30.0% |
| ! | ATACTGCAACATTTTCAACT+AGG | - | chr3.4:89249126-89249145 | MS.gene054621:intron | 30.0% |
| ! | ATCCAGGAATTTTGAATAGT+GGG | - | chr3.4:89249683-89249702 | MS.gene054621:intron | 30.0% |
| ! | GAGAGTGATTTTACTAACAT+AGG | + | chr3.4:89248716-89248735 | None:intergenic | 30.0% |
| ! | GGTAAAATGGTTTTCAAATG+CGG | + | chr3.4:89249978-89249997 | None:intergenic | 30.0% |
| ! | TGATTTTACTAACATAGGGA+GGG | + | chr3.4:89248711-89248730 | None:intergenic | 30.0% |
| !! | AGTCTTTGTTTCTACTACAT+CGG | - | chr3.4:89250362-89250381 | MS.gene054621:CDS | 30.0% |
| !! | ATGACAATAAGAAGCACTTA+TGG | - | chr3.4:89251234-89251253 | MS.gene054621:intron | 30.0% |
| !! | CATACTAGAAAGTTCTGAAA+TGG | - | chr3.4:89250881-89250900 | MS.gene054621:intron | 30.0% |
| !! | TAAAAGTTCTGCTTTGTTTC+AGG | - | chr3.4:89250842-89250861 | MS.gene054621:intron | 30.0% |
| !! | TCAAATGTAGCTTTTTCTGT+TGG | - | chr3.4:89251121-89251140 | MS.gene054621:intron | 30.0% |
| !!! | ACATGACAAACCTGTTTTTT+AGG | + | chr3.4:89249566-89249585 | None:intergenic | 30.0% |
| !!! | ATTTTTTCAACTTTCACAGG+TGG | - | chr3.4:89248582-89248601 | MS.gene054621:CDS | 30.0% |
| AAAAGGAGATACATGAAGTC+AGG | + | chr3.4:89249389-89249408 | None:intergenic | 35.0% | |
| AAAGACTTAGCAGTATGTGT+TGG | + | chr3.4:89250349-89250368 | None:intergenic | 35.0% | |
| AAAGGAGATACATGAAGTCA+GGG | + | chr3.4:89249388-89249407 | None:intergenic | 35.0% | |
| AATAGTTAGGCTTGAAGAGA+AGG | - | chr3.4:89248977-89248996 | MS.gene054621:intron | 35.0% | |
| ACTTAGAATCATTGCTAGAC+TGG | - | chr3.4:89251928-89251947 | MS.gene054621:intron | 35.0% | |
| AGCCAAAAGAGAATACTTAC+AGG | - | chr3.4:89251830-89251849 | MS.gene054621:CDS | 35.0% | |
| AGCTACATTTGAAAAGGACA+AGG | + | chr3.4:89251113-89251132 | None:intergenic | 35.0% | |
| ATCCATATGTAAAGGCCAAA+TGG | - | chr3.4:89249478-89249497 | MS.gene054621:intron | 35.0% | |
| CACTGCAAACCTTTATAATC+TGG | - | chr3.4:89249893-89249912 | MS.gene054621:CDS | 35.0% | |
| CCAAATTCCAAGATACCATA+AGG | + | chr3.4:89250265-89250284 | None:intergenic | 35.0% | |
| CCTTAAAATGCAGTGTTCTA+TGG | + | chr3.4:89251058-89251077 | None:intergenic | 35.0% | |
| CCTTATGGTATCTTGGAATT+TGG | - | chr3.4:89250262-89250281 | MS.gene054621:CDS | 35.0% | |
| CTTGCACATAATTGCTTGTA+TGG | + | chr3.4:89250304-89250323 | None:intergenic | 35.0% | |
| GATAGGTGTGTAAATAGGTT+AGG | - | chr3.4:89251456-89251475 | MS.gene054621:CDS | 35.0% | |
| GGCATAAGAAATGCTGTTAA+AGG | - | chr3.4:89248441-89248460 | MS.gene054621:CDS | 35.0% | |
| GTGTGTAAATAGGTTAGGTT+AGG | - | chr3.4:89251461-89251480 | MS.gene054621:CDS | 35.0% | |
| TAGTGGTCACTAAAATCAGA+GGG | + | chr3.4:89249291-89249310 | None:intergenic | 35.0% | |
| TATGGTTGTGGCATTTAACA+AGG | + | chr3.4:89251040-89251059 | None:intergenic | 35.0% | |
| TCACAACACCATAGTAATTG+AGG | + | chr3.4:89251400-89251419 | None:intergenic | 35.0% | |
| TCCAATTACCAAGTGAACAA+GGG | - | chr3.4:89251958-89251977 | MS.gene054621:intron | 35.0% | |
| TCTCAGATAGGTGTGTAAAT+AGG | - | chr3.4:89251451-89251470 | MS.gene054621:CDS | 35.0% | |
| TGAAACACTGATACAAACAC+CGG | - | chr3.4:89248761-89248780 | MS.gene054621:intron | 35.0% | |
| TGCCATTACTTTCAGATTGA+AGG | + | chr3.4:89250819-89250838 | None:intergenic | 35.0% | |
| TGCCTTCAATCTGAAAGTAA+TGG | - | chr3.4:89250814-89250833 | MS.gene054621:intron | 35.0% | |
| TGTTTGAGCTACTGGTAAAA+TGG | + | chr3.4:89249991-89250010 | None:intergenic | 35.0% | |
| TTAATCAGTCTTTCAATGGC+CGG | + | chr3.4:89251553-89251572 | None:intergenic | 35.0% | |
| TTGAAAATAGCCACATGTGT+CGG | - | chr3.4:89250749-89250768 | MS.gene054621:intron | 35.0% | |
| TTTCGATCCTTATGGTATCT+TGG | - | chr3.4:89250255-89250274 | MS.gene054621:CDS | 35.0% | |
| ! | AGCCTGTAAGTATTCTCTTT+TGG | + | chr3.4:89251835-89251854 | None:intergenic | 35.0% |
| ! | ATAGGTTGAAGAAGAAGCTT+AGG | - | chr3.4:89248605-89248624 | MS.gene054621:CDS | 35.0% |
| ! | CAAAATGAAACTGGAGCATT+TGG | - | chr3.4:89249052-89249071 | MS.gene054621:intron | 35.0% |
| ! | CAAATGCTCCAGTTTCATTT+TGG | + | chr3.4:89249054-89249073 | None:intergenic | 35.0% |
| ! | CCATAGAACACTGCATTTTA+AGG | - | chr3.4:89251055-89251074 | MS.gene054621:intron | 35.0% |
| ! | GATCCAGGAATTTTGAATAG+TGG | - | chr3.4:89249682-89249701 | MS.gene054621:intron | 35.0% |
| ! | GTGATTTTACTAACATAGGG+AGG | + | chr3.4:89248712-89248731 | None:intergenic | 35.0% |
| ! | TCCAGGAATTTTGAATAGTG+GGG | - | chr3.4:89249684-89249703 | MS.gene054621:intron | 35.0% |
| ! | TTTCAGATTGAAGGCATATC+CGG | + | chr3.4:89250810-89250829 | None:intergenic | 35.0% |
| !! | AATAAGAAGCACTTATGGAC+TGG | - | chr3.4:89251239-89251258 | MS.gene054621:intron | 35.0% |
| !! | AATGTAGCTTTTTCTGTTGG+TGG | - | chr3.4:89251124-89251143 | MS.gene054621:intron | 35.0% |
| !! | ATGTAGCTTTTTCTGTTGGT+GGG | - | chr3.4:89251125-89251144 | MS.gene054621:intron | 35.0% |
| !! | CATTGGAAAGAGCTTTGAAT+AGG | - | chr3.4:89248650-89248669 | MS.gene054621:CDS | 35.0% |
| !! | TGCTGATTCATGATGAGATT+TGG | - | chr3.4:89251754-89251773 | MS.gene054621:intron | 35.0% |
| !!! | ATGCGGTTTTCTTGTTATTC+AGG | - | chr3.4:89250993-89251012 | MS.gene054621:CDS | 35.0% |
| !!! | TGACAAACCTGTTTTTTAGG+AGG | + | chr3.4:89249563-89249582 | None:intergenic | 35.0% |
| !!! | TGAGAGTTTTGAGGAATTCT+AGG | + | chr3.4:89248417-89248436 | None:intergenic | 35.0% |
| !!! | TTTTAAGGCTTCCATATCAC+TGG | - | chr3.4:89251070-89251089 | MS.gene054621:intron | 35.0% |
| AAAATGCAAGCTTCTCTTGG+TGG | + | chr3.4:89250544-89250563 | None:intergenic | 40.0% | |
| AAGAGAGAGCAAATGTGACT+AGG | + | chr3.4:89251278-89251297 | None:intergenic | 40.0% | |
| AATGCAGTGTTCTATGGTTG+TGG | + | chr3.4:89251052-89251071 | None:intergenic | 40.0% | |
| AGAGAGAGCAAATGTGACTA+GGG | + | chr3.4:89251277-89251296 | None:intergenic | 40.0% | |
| AGTGGTCACTAAAATCAGAG+GGG | + | chr3.4:89249290-89249309 | None:intergenic | 40.0% | |
| ATTGATGTAGCGTCTCAGAT+AGG | - | chr3.4:89251439-89251458 | MS.gene054621:CDS | 40.0% | |
| CACAGCATCACATATTGAGA+AGG | - | chr3.4:89251797-89251816 | MS.gene054621:CDS | 40.0% | |
| CAGGCAACAATAAATGTAGG+TGG | - | chr3.4:89251012-89251031 | MS.gene054621:CDS | 40.0% | |
| CTCCAATTACCAAGTGAACA+AGG | - | chr3.4:89251957-89251976 | MS.gene054621:intron | 40.0% | |
| CTGCATCAGCCAGATTATAA+AGG | + | chr3.4:89249905-89249924 | None:intergenic | 40.0% | |
| GAATACTTACAGGCTGCAAT+TGG | - | chr3.4:89251840-89251859 | MS.gene054621:CDS | 40.0% | |
| GAATGAGTACACCAACTTTC+AGG | - | chr3.4:89250194-89250213 | MS.gene054621:CDS | 40.0% | |
| GTAGTGGTCACTAAAATCAG+AGG | + | chr3.4:89249292-89249311 | None:intergenic | 40.0% | |
| GTCATCCTCCAAAATGAAAC+TGG | - | chr3.4:89249043-89249062 | MS.gene054621:intron | 40.0% | |
| GTCCAAGTTTCAAAGTGTAG+TGG | + | chr3.4:89249308-89249327 | None:intergenic | 40.0% | |
| GTGTAAACTCTAACCTGCAT+TGG | + | chr3.4:89251780-89251799 | None:intergenic | 40.0% | |
| TAAAGGTTTGCAGTGTAACC+AGG | + | chr3.4:89249888-89249907 | None:intergenic | 40.0% | |
| TCCAAAATGCAAGCTTCTCT+TGG | + | chr3.4:89250547-89250566 | None:intergenic | 40.0% | |
| TTAAATTGTGGTCGTGACTG+CGG | - | chr3.4:89249644-89249663 | MS.gene054621:intron | 40.0% | |
| TTCAACTTTCACAGGTGGAT+AGG | - | chr3.4:89248587-89248606 | MS.gene054621:CDS | 40.0% | |
| TTCTTCAGTGTTTGAGCTAC+TGG | + | chr3.4:89249999-89250018 | None:intergenic | 40.0% | |
| TTTGGACTTTCATCTCCTTG+TGG | + | chr3.4:89250127-89250146 | None:intergenic | 40.0% | |
| ! | ACCAAGAGAAGCTTGCATTT+TGG | - | chr3.4:89250543-89250562 | MS.gene054621:intron | 40.0% |
| ! | ATGCTCCAGTTTCATTTTGG+AGG | + | chr3.4:89249051-89249070 | None:intergenic | 40.0% |
| ! | CCAGGAATTTTGAATAGTGG+GGG | - | chr3.4:89249685-89249704 | MS.gene054621:intron | 40.0% |
| ! | CTTGTTCACTTGGTAATTGG+AGG | + | chr3.4:89251959-89251978 | None:intergenic | 40.0% |
| ! | GAAGGTCTTACATTTTAGGC+AGG | - | chr3.4:89248995-89249014 | MS.gene054621:intron | 40.0% |
| ! | TCCCTTGTTCACTTGGTAAT+TGG | + | chr3.4:89251962-89251981 | None:intergenic | 40.0% |
| ! | TGCCATTTGGCCTTTACATA+TGG | + | chr3.4:89249483-89249502 | None:intergenic | 40.0% |
| ! | TTGCAATTGCGGCAGTTTTA+AGG | + | chr3.4:89249948-89249967 | None:intergenic | 40.0% |
| !! | AAGAGCTTTGAATAGGCCTT+TGG | - | chr3.4:89248657-89248676 | MS.gene054621:CDS | 40.0% |
| !! | ACGGAGTTTTTCGATCCTTA+TGG | - | chr3.4:89250247-89250266 | MS.gene054621:CDS | 40.0% |
| !! | AGAGCTTTGAATAGGCCTTT+GGG | - | chr3.4:89248658-89248677 | MS.gene054621:CDS | 40.0% |
| !! | ATGCCCTTTTGAGAGTTTTG+AGG | + | chr3.4:89248426-89248445 | None:intergenic | 40.0% |
| !! | GACCACTACACTTTGAAACT+TGG | - | chr3.4:89249303-89249322 | MS.gene054621:intron | 40.0% |
| !! | GATTTTAGAGGCCTGAAAGT+TGG | + | chr3.4:89250208-89250227 | None:intergenic | 40.0% |
| !! | TCACCAGGAAGAGTTGTTTT+AGG | + | chr3.4:89249152-89249171 | None:intergenic | 40.0% |
| !! | TGTTCAGCATTGACACATGT+CGG | - | chr3.4:89250781-89250800 | MS.gene054621:intron | 40.0% |
| AACCAGGCATGGATCTATGT+AGG | + | chr3.4:89249872-89249891 | None:intergenic | 45.0% | |
| AACGTGTCAATGTCGTGTTC+CGG | + | chr3.4:89248783-89248802 | None:intergenic | 45.0% | |
| AGGCCTAAAACAACTCTTCC+TGG | - | chr3.4:89249146-89249165 | MS.gene054621:intron | 45.0% | |
| CAGTAATGGTCTGTGAAGCA+CGG | - | chr3.4:89250684-89250703 | MS.gene054621:intron | 45.0% | |
| CCCCCACTATTCAAAATTCC+TGG | + | chr3.4:89249688-89249707 | None:intergenic | 45.0% | |
| CTAACATAGGGAGGGAGATA+AGG | + | chr3.4:89248703-89248722 | None:intergenic | 45.0% | |
| CTGTGAGCCTCCTAAAAAAC+AGG | - | chr3.4:89249553-89249572 | MS.gene054621:CDS | 45.0% | |
| GAAGAAGAAGCTTAGGCATG+AGG | - | chr3.4:89248612-89248631 | MS.gene054621:CDS | 45.0% | |
| GAGAGAGCAAATGTGACTAG+GGG | + | chr3.4:89251276-89251295 | None:intergenic | 45.0% | |
| GCAAGTGATCAACTTACAGC+AGG | + | chr3.4:89251318-89251337 | None:intergenic | 45.0% | |
| GCATGAGGAGAACATTCACA+AGG | - | chr3.4:89248627-89248646 | MS.gene054621:CDS | 45.0% | |
| GCTTCTTTCCCTTGTTCACT+TGG | + | chr3.4:89251969-89251988 | None:intergenic | 45.0% | |
| GGAGAACATTCACAAGGCAT+TGG | - | chr3.4:89248633-89248652 | MS.gene054621:CDS | 45.0% | |
| GTCACATTTGCTCTCTCTTG+TGG | - | chr3.4:89251279-89251298 | MS.gene054621:intron | 45.0% | |
| TCTCCTTGTGGAGTTTCTTG+TGG | + | chr3.4:89250115-89250134 | None:intergenic | 45.0% | |
| TGATGAGATTTGGCCAATGC+AGG | - | chr3.4:89251764-89251783 | MS.gene054621:CDS | 45.0% | |
| TTGCTCTCTCTTGTGGAACT+TGG | - | chr3.4:89251286-89251305 | MS.gene054621:intron | 45.0% | |
| ! | CATTGGACTAGATACTCACC+AGG | + | chr3.4:89249167-89249186 | None:intergenic | 45.0% |
| ! | GGTTGTTGCATTGATGCAGA+AGG | - | chr3.4:89250902-89250921 | MS.gene054621:CDS | 45.0% |
| ! | TTGCATTGATGCAGAAGGTG+TGG | - | chr3.4:89250907-89250926 | MS.gene054621:CDS | 45.0% |
| ! | TTTTCCTACTTTGCAGCAGC+AGG | - | chr3.4:89250042-89250061 | MS.gene054621:intron | 45.0% |
| !! | TAAACAATTAATTAATATAA+GGG | + | chr3.4:89250449-89250468 | None:intergenic | 5.0% |
| !!! | AATTTTCAATATTTTATAAA+GGG | - | chr3.4:89251347-89251366 | MS.gene054621:CDS | 5.0% |
| !!! | TATTATTACTTAATTTTTTA+TGG | - | chr3.4:89250423-89250442 | MS.gene054621:intron | 5.0% |
| !!! | TTATACTTTTAAATATAAAA+TGG | + | chr3.4:89249738-89249757 | None:intergenic | 5.0% |
| ACATAGGGAGGGAGATAAGG+AGG | + | chr3.4:89248700-89248719 | None:intergenic | 50.0% | |
| ACTCTAGACGCTAGGACTTG+TGG | - | chr3.4:89248929-89248948 | MS.gene054621:intron | 50.0% | |
| AGTTCCTGCTGCTGCAAAGT+AGG | + | chr3.4:89250049-89250068 | None:intergenic | 50.0% | |
| CATTGACACATGTCGGACAC+CGG | - | chr3.4:89250788-89250807 | MS.gene054621:intron | 50.0% | |
| CGTCCACAAGAAACTCCACA+AGG | - | chr3.4:89250109-89250128 | MS.gene054621:CDS | 50.0% | |
| CTTTGCAGCAGCAGGAACTA+AGG | - | chr3.4:89250050-89250069 | MS.gene054621:intron | 50.0% | |
| GATCTATGTAGGCCACTGTG+TGG | + | chr3.4:89249861-89249880 | None:intergenic | 50.0% | |
| GCATTTGGAAGCTGCTTCTG+TGG | - | chr3.4:89249067-89249086 | MS.gene054621:intron | 50.0% | |
| GCGGTCTGCAATTGCAATTG+CGG | + | chr3.4:89249959-89249978 | None:intergenic | 50.0% | |
| GTTTGCAGTGTAACCAGGCA+TGG | + | chr3.4:89249883-89249902 | None:intergenic | 50.0% | |
| ! | CAAGCTTCTCTTGGTGGTTG+AGG | + | chr3.4:89250538-89250557 | None:intergenic | 50.0% |
| ! | TAGGCCTGGGCACGTTTTTA+AGG | - | chr3.4:89251526-89251545 | MS.gene054621:intron | 50.0% |
| !! | ACTATGGTGTTGTGATCGCG+AGG | - | chr3.4:89251405-89251424 | MS.gene054621:CDS | 50.0% |
| !!! | CTGGGCACGTTTTTAAGGTC+CGG | - | chr3.4:89251531-89251550 | MS.gene054621:intron | 50.0% |
| ACCGACATGACCGACACATG+TGG | + | chr3.4:89250762-89250781 | None:intergenic | 55.0% | |
| ACTGCGGTTACACTCAGGGA+CGG | - | chr3.4:89249660-89249679 | MS.gene054621:intron | 55.0% | |
| AGACGAGGCAAAGCTCCCAA+AGG | + | chr3.4:89248676-89248695 | None:intergenic | 55.0% | |
| CGGACCTTAAAAACGTGCCC+AGG | + | chr3.4:89251533-89251552 | None:intergenic | 55.0% | |
| CGTGACTGCGGTTACACTCA+GGG | - | chr3.4:89249656-89249675 | MS.gene054621:intron | 55.0% | |
| GCTAGGACTTGTGGCTGAAG+TGG | - | chr3.4:89248938-89248957 | MS.gene054621:intron | 55.0% | |
| GGCCTACATAGATCCATGCC+TGG | - | chr3.4:89249867-89249886 | MS.gene054621:intron | 55.0% | |
| GGGAGATAAGGAGGAAGACG+AGG | + | chr3.4:89248691-89248710 | None:intergenic | 55.0% | |
| TCGTGACTGCGGTTACACTC+AGG | - | chr3.4:89249655-89249674 | MS.gene054621:intron | 55.0% | |
| TTACACTCAGGGACGGATCC+AGG | - | chr3.4:89249667-89249686 | MS.gene054621:intron | 55.0% | |
| ! | GCCACATGTGTCGGTCATGT+CGG | - | chr3.4:89250758-89250777 | MS.gene054621:intron | 55.0% |
| ! | GGAGGCACACATCCACACAG+TGG | - | chr3.4:89249846-89249865 | MS.gene054621:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89248387 | 89252085 | 89248387 | ID=MS.gene054621 |
| chr3.4 | mRNA | 89248387 | 89252085 | 89248387 | ID=MS.gene054621.t1;Parent=MS.gene054621 |
| chr3.4 | exon | 89251963 | 89252085 | 89251963 | ID=MS.gene054621.t1.exon1;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89251963 | 89252085 | 89251963 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89251755 | 89251871 | 89251755 | ID=MS.gene054621.t1.exon2;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89251755 | 89251871 | 89251755 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89251305 | 89251536 | 89251305 | ID=MS.gene054621.t1.exon3;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89251305 | 89251536 | 89251305 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89250898 | 89251052 | 89250898 | ID=MS.gene054621.t1.exon4;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89250898 | 89251052 | 89250898 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89250083 | 89250414 | 89250083 | ID=MS.gene054621.t1.exon5;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89250083 | 89250414 | 89250083 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89249877 | 89249976 | 89249877 | ID=MS.gene054621.t1.exon6;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89249877 | 89249976 | 89249877 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89249549 | 89249608 | 89249549 | ID=MS.gene054621.t1.exon7;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89249549 | 89249608 | 89249549 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89249374 | 89249457 | 89249374 | ID=MS.gene054621.t1.exon8;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89249374 | 89249457 | 89249374 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89249152 | 89249286 | 89249152 | ID=MS.gene054621.t1.exon9;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89249152 | 89249286 | 89249152 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| chr3.4 | exon | 89248387 | 89248719 | 89248387 | ID=MS.gene054621.t1.exon10;Parent=MS.gene054621.t1 |
| chr3.4 | CDS | 89248387 | 89248719 | 89248387 | ID=cds.MS.gene054621.t1;Parent=MS.gene054621.t1 |
| Gene Sequence |
| Protein sequence |
