AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48480.t1 MTR_3g101340 92.832 558 27 2 1 556 26 572 0.0 1026
MS.gene48480.t1 MTR_3g101340 91.398 558 27 3 1 556 1 539 0.0 1002
MS.gene48480.t1 MTR_3g101340 91.413 559 26 4 1 556 26 565 0.0 1000
MS.gene48480.t1 MTR_1g021040 61.687 569 166 10 17 556 2 547 0.0 607
MS.gene48480.t1 MTR_5g017790 50.998 551 221 14 22 554 13 532 1.24e-153 451
MS.gene48480.t1 MTR_5g017790 50.995 553 218 15 22 554 25 544 1.73e-153 451
MS.gene48480.t1 MTR_8g079840 46.711 608 235 17 12 554 12 595 1.82e-135 406
MS.gene48480.t1 MTR_5g017790 48.866 397 171 12 22 399 25 408 5.55e-90 283
MS.gene48480.t1 MTR_8g079840 44.000 500 203 15 12 447 12 498 1.84e-89 285
MS.gene48480.t1 MTR_5g079910 31.173 571 278 17 28 554 10 509 1.14e-65 222
MS.gene48480.t1 MTR_4g058015 29.325 607 330 19 24 555 108 690 4.67e-60 211
MS.gene48480.t1 MTR_5g018820 26.838 585 323 23 37 555 74 619 2.31e-34 137
MS.gene48480.t1 MTR_5g012790 26.007 546 348 16 27 555 78 584 4.15e-34 137
MS.gene48480.t1 MTR_8g078760 29.513 349 193 9 235 554 296 620 9.40e-33 133
MS.gene48480.t1 MTR_4g068920 24.214 541 306 21 84 555 124 629 5.06e-25 109
MS.gene48480.t1 MTR_5g079910 26.735 389 198 12 28 376 10 351 8.67e-23 100
MS.gene48480.t1 MTR_8g078760 29.200 250 141 6 235 456 296 537 3.87e-20 94.4
MS.gene48480.t1 MTR_3g073590 29.442 197 104 5 315 504 591 759 2.04e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48480.t1 AT5G42690 49.908 543 229 12 18 555 8 512 4.55e-144 426
MS.gene48480.t1 AT5G42690 49.908 543 229 12 18 555 35 539 1.36e-143 425
MS.gene48480.t1 AT5G42690 49.908 543 229 12 18 555 35 539 1.36e-143 425
MS.gene48480.t1 AT5G42690 49.908 543 228 13 18 555 35 538 3.58e-142 422
MS.gene48480.t1 AT5G42690 50.674 519 213 12 42 555 7 487 3.19e-138 410
MS.gene48480.t1 AT4G37080 43.987 607 235 15 15 554 27 595 2.25e-130 393
MS.gene48480.t1 AT4G37080 43.987 607 235 15 15 554 40 608 2.48e-130 394
MS.gene48480.t1 AT4G37080 43.987 607 235 15 15 554 40 608 2.48e-130 394
MS.gene48480.t1 AT4G37080 41.770 486 194 12 28 447 49 511 2.12e-85 274
MS.gene48480.t1 AT2G39690 38.506 348 163 9 235 555 94 417 5.07e-61 207
MS.gene48480.t1 AT2G39690 31.475 556 300 16 33 555 17 524 3.10e-60 208
MS.gene48480.t1 AT2G39690 38.506 348 163 9 235 555 175 498 4.26e-60 207
MS.gene48480.t1 AT2G39690 30.935 556 302 16 33 555 17 523 2.05e-59 206
MS.gene48480.t1 AT2G39690 37.931 348 164 9 235 555 175 497 2.53e-59 205
MS.gene48480.t1 AT3G12540 30.396 556 314 18 32 555 57 571 1.30e-54 194
MS.gene48480.t1 AT3G12540 30.410 536 292 19 60 555 10 504 2.66e-53 189
MS.gene48480.t1 AT5G60720 34.667 375 165 14 237 555 340 690 3.76e-51 186
MS.gene48480.t1 AT1G16750 28.493 544 326 18 27 554 31 527 3.22e-40 153
MS.gene48480.t1 AT5G47380 26.923 572 350 19 4 555 8 531 3.78e-36 142
MS.gene48480.t1 AT5G47380 25.528 568 363 15 4 555 64 587 6.01e-36 142
MS.gene48480.t1 AT5G47380 26.923 572 350 19 4 555 64 587 7.62e-36 142
MS.gene48480.t1 AT3G13000 28.989 376 186 14 235 554 224 574 3.78e-35 139
MS.gene48480.t1 AT3G13000 28.989 376 186 14 235 554 224 574 3.78e-35 139
MS.gene48480.t1 AT3G13000 28.610 374 190 13 235 554 195 545 4.01e-35 139
MS.gene48480.t1 AT2G39690 36.287 237 114 5 235 447 201 424 8.71e-35 136
MS.gene48480.t1 AT2G39690 35.443 237 115 5 235 447 201 423 5.69e-34 134
MS.gene48480.t1 AT5G66600 25.308 569 341 20 37 554 19 554 5.30e-33 133
MS.gene48480.t1 AT5G66600 25.308 569 341 20 37 554 53 588 8.37e-33 133
MS.gene48480.t1 AT5G66600 25.308 569 341 20 37 554 73 608 9.23e-33 133
MS.gene48480.t1 AT5G66600 25.308 569 341 20 37 554 73 608 9.23e-33 133
MS.gene48480.t1 AT5G66600 25.308 569 341 20 37 554 73 608 9.23e-33 133
MS.gene48480.t1 AT5G66600 25.308 569 341 20 37 554 73 608 9.23e-33 133
MS.gene48480.t1 AT5G66600 25.308 569 341 20 37 554 73 608 9.23e-33 133
MS.gene48480.t1 AT2G23700 29.577 355 178 12 236 555 385 702 1.59e-32 133
MS.gene48480.t1 AT3G18900 30.539 334 181 13 235 554 234 530 9.59e-27 114
MS.gene48480.t1 AT3G18900 30.539 334 181 13 235 554 229 525 1.08e-26 114
MS.gene48480.t1 AT3G18900 30.539 334 181 13 235 554 153 449 1.79e-26 112
MS.gene48480.t1 AT3G18900 30.539 334 181 13 235 554 153 449 1.79e-26 112
MS.gene48480.t1 AT2G39690 34.973 183 93 4 235 393 175 355 1.82e-25 108
MS.gene48480.t1 AT5G47380 25.108 462 299 12 4 451 64 492 2.52e-23 103
MS.gene48480.t1 AT1G76620 30.252 238 146 5 319 555 299 517 2.97e-23 103
MS.gene48480.t1 AT5G47380 26.957 460 281 16 4 445 64 486 5.57e-23 102
MS.gene48480.t1 AT1G43020 29.787 329 176 14 236 554 151 434 1.51e-22 100
MS.gene48480.t1 AT5G66600 25.536 466 276 17 37 451 73 518 2.65e-21 97.8
MS.gene48480.t1 AT5G66600 25.536 466 276 17 37 451 73 518 2.65e-21 97.8
MS.gene48480.t1 AT5G66600 25.536 466 276 17 37 451 73 518 2.65e-21 97.8
MS.gene48480.t1 AT5G66600 25.536 466 276 17 37 451 73 518 2.65e-21 97.8
MS.gene48480.t1 AT1G21060 29.536 237 144 5 319 554 277 491 2.50e-20 94.7
MS.gene48480.t1 AT1G21060 29.536 237 144 5 319 554 289 503 2.52e-20 94.7
MS.gene48480.t1 AT1G16750 27.105 380 238 12 27 395 31 382 4.72e-19 90.1
MS.gene48480.t1 AT3G18900 30.769 221 127 7 235 447 234 436 1.39e-16 82.8
MS.gene48480.t1 AT5G66600 25.187 401 242 14 37 390 19 408 1.13e-15 80.1
MS.gene48480.t1 AT5G66600 25.187 401 242 14 37 390 73 462 1.85e-15 79.7
MS.gene48480.t1 AT5G66600 25.187 401 242 14 37 390 73 462 1.85e-15 79.7
MS.gene48480.t1 AT5G66600 25.187 401 242 14 37 390 73 462 1.85e-15 79.7
MS.gene48480.t1 AT1G43020 32.258 217 112 9 236 445 151 339 6.67e-15 76.6
MS.gene48480.t1 AT3G18900 34.568 162 88 5 235 390 234 383 7.53e-15 77.0
MS.gene48480.t1 AT4G08550 28.500 200 114 5 315 510 480 654 2.33e-14 76.6
MS.gene48480.t1 AT4G08550 28.500 200 114 5 315 510 426 600 2.38e-14 76.6
MS.gene48480.t1 AT3G11920 29.469 207 115 8 319 519 419 600 4.19e-12 69.3

Find 85 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATGGTATCTTGGAATT+TGG 0.102319 3.1:-80461971 MS.gene48480:CDS
TCCCTTGTTCACTTGGTAAT+TGG 0.180237 3.1:+80459479 None:intergenic
ACAACCATTTCAGGACTTTC+TGG 0.198778 3.1:+80460553 None:intergenic
CAAACAGATCACATTATTAA+AGG 0.209397 3.1:-80460244 MS.gene48480:CDS
ACCAAGAGAAGCTTGCATTT+TGG 0.224784 3.1:-80460898 MS.gene48480:CDS
TCCAAATGATAGTACAAAAT+TGG 0.226640 3.1:-80462996 MS.gene48480:CDS
TTTCAGGCTTTCATAGAAAA+TGG 0.244617 3.1:-80460580 MS.gene48480:intron
GAATGAGTACACCAACTTTC+AGG 0.255222 3.1:-80462039 MS.gene48480:CDS
CTTACATATTTCCAGTGATA+TGG 0.276394 3.1:+80460357 None:intergenic
AGCCTGTAAGTATTCTCTTT+TGG 0.289352 3.1:+80459606 None:intergenic
CTTTAATAATGTGATCTGTT+TGG 0.311782 3.1:+80460245 None:intergenic
CTTGCACATAATTGCTTGTA+TGG 0.312423 3.1:+80461932 None:intergenic
TACCTAAAACTAAACTTATA+AGG 0.317728 3.1:+80459391 None:intergenic
GGCATAAGAAATGCTGTTAA+AGG 0.322385 3.1:-80463655 MS.gene48480:CDS
AAATACCAATCTAACATCTT+TGG 0.326581 3.1:+80459550 None:intergenic
TGCCATTTGGCCTTTACATA+TGG 0.329071 3.1:+80462616 None:intergenic
ATCAAGCAAAGACAGAAAAT+TGG 0.331031 3.1:-80463623 MS.gene48480:CDS
CCTTAAAATGCAGTGTTCTA+TGG 0.336704 3.1:+80460383 None:intergenic
AAGAGCTTTGAATAGGCCTT+TGG 0.355706 3.1:-80463439 MS.gene48480:CDS
ATCAATGCAACAACCATTTC+AGG 0.355842 3.1:+80460544 None:intergenic
GAATTTGGAAAGAGAGATAT+TGG 0.357324 3.1:-80461956 MS.gene48480:CDS
CAAGCTTCTCTTGGTGGTTG+AGG 0.358782 3.1:+80460906 None:intergenic
ATGACAATAAGAAGCACTTA+TGG 0.360141 3.1:-80460204 MS.gene48480:CDS
CAAGATGAAACTGGAGCATT+TGG 0.362156 3.1:-80463044 MS.gene48480:CDS
CAAATGCTCCAGTTTCATCT+TGG 0.373623 3.1:+80463045 None:intergenic
TGCTGATTCATGATGAGATT+TGG 0.376454 3.1:-80459684 MS.gene48480:CDS
GCTTCTTTCCCTTGTTCACT+TGG 0.383608 3.1:+80459472 None:intergenic
TGATTTCTTACTTCAGCAAT+TGG 0.390825 3.1:+80462148 None:intergenic
TTGCTCTCTCTTGTGGAACT+TGG 0.395357 3.1:-80460152 MS.gene48480:CDS
TTTCGATCCTTATGGTATCT+TGG 0.397308 3.1:-80461978 MS.gene48480:CDS
CTTGTTCACTTGGTAATTGG+AGG 0.401273 3.1:+80459482 None:intergenic
TGTAGTGATTTATTGTCAAC+TGG 0.403736 3.1:+80462572 None:intergenic
TCCAAAATGCAAGCTTCTCT+TGG 0.407594 3.1:+80460897 None:intergenic
AGCCAAAAGAGAATACTTAC+AGG 0.418978 3.1:-80459608 MS.gene48480:CDS
AATTCCTCAAAACTCTCAAA+AGG 0.420571 3.1:-80463677 MS.gene48480:CDS
GTCATCCTCCAAGATGAAAC+TGG 0.423689 3.1:-80463053 MS.gene48480:CDS
CATTGGAAAGAGCTTTGAAT+AGG 0.428590 3.1:-80463446 MS.gene48480:CDS
AGGCCTAAAACAACTCTTCC+TGG 0.431097 3.1:-80462950 MS.gene48480:intron
GTCACATTTGCTCTCTCTTG+TGG 0.432883 3.1:-80460159 MS.gene48480:CDS
GAATACTTACAGGCTGCAAT+TGG 0.433643 3.1:-80459598 MS.gene48480:CDS
CCAAATTCCAAGATACCATA+AGG 0.433856 3.1:+80461971 None:intergenic
AGAGCTTTGAATAGGCCTTT+GGG 0.434744 3.1:-80463438 MS.gene48480:CDS
TTATTCCAAAGATGTTAGAT+TGG 0.438738 3.1:-80459555 MS.gene48480:CDS
CTTTGCAGCAGCAGGAACTA+AGG 0.466302 3.1:-80462183 MS.gene48480:intron
TCTCCTTGTGGAGTTTCTTG+TGG 0.467052 3.1:+80462121 None:intergenic
ATGCTCCAGTTTCATCTTGG+AGG 0.471468 3.1:+80463048 None:intergenic
ATCCATATGTAAAGGCCAAA+TGG 0.476033 3.1:-80462618 MS.gene48480:CDS
AATAGTTAGGCTTGAAGAGA+AGG 0.476326 3.1:-80463119 MS.gene48480:CDS
AAAATGCAAGCTTCTCTTGG+TGG 0.481113 3.1:+80460900 None:intergenic
CTAACATAGGGAGGGAGATA+AGG 0.484013 3.1:+80463396 None:intergenic
TGATGAGATTTGGCCAATGC+AGG 0.485017 3.1:-80459674 MS.gene48480:CDS
CATACCAGAAAGTCCTGAAA+TGG 0.495659 3.1:-80460557 MS.gene48480:CDS
AGAGAGAGCAAATGTGACTA+GGG 0.497407 3.1:+80460164 None:intergenic
GTTTATTGAAACTGAAGTCA+TGG 0.501719 3.1:+80463711 None:intergenic
TGCTAGAAGAAGAAATAGTT+AGG 0.501808 3.1:-80463132 MS.gene48480:CDS
ACTTAGAATCATTGCTAGAC+TGG 0.504652 3.1:-80459510 MS.gene48480:CDS
TTTGGACTTTCATCTCCTTG+TGG 0.509477 3.1:+80462109 None:intergenic
CTCCAATTACCAAGTGAACA+AGG 0.511766 3.1:-80459481 MS.gene48480:CDS
ATTCCTCAAAACTCTCAAAA+GGG 0.516730 3.1:-80463676 MS.gene48480:CDS
AGCAAGAAATCCATATGTAA+AGG 0.522417 3.1:-80462626 MS.gene48480:CDS
AAGAGAGAGCAAATGTGACT+AGG 0.525788 3.1:+80460163 None:intergenic
AAAGACTTAGCAGTTTGTGT+TGG 0.527005 3.1:+80461887 None:intergenic
TTCAACTTTCACAGGTGGAT+AGG 0.535430 3.1:-80463509 MS.gene48480:intron
GCATTTGGAAGCTGCTTCTG+TGG 0.539751 3.1:-80463029 MS.gene48480:CDS
ATTCAGGCAACAATAAATGT+AGG 0.542703 3.1:-80460429 MS.gene48480:intron
ATAGGTTGAAGAAGAAGCTT+AGG 0.543202 3.1:-80463491 MS.gene48480:CDS
AATAAGAAGCACTTATGGAC+TGG 0.543742 3.1:-80460199 MS.gene48480:CDS
GGAGAACATTCACAAGGCAT+TGG 0.546595 3.1:-80463463 MS.gene48480:CDS
TATGGTTGTGGCATTTAACA+AGG 0.552219 3.1:+80460401 None:intergenic
AATGCAGTGTTCTATGGTTG+TGG 0.557697 3.1:+80460389 None:intergenic
GGGAGATAAGGAGGAAGACG+AGG 0.568888 3.1:+80463408 None:intergenic
CACAGCATCACATATTGAGA+AGG 0.574850 3.1:-80459641 MS.gene48480:CDS
GCTAGGACTTGTGGCTGAAG+TGG 0.583652 3.1:-80463158 MS.gene48480:CDS
GAAGAAGAAGCTTAGGCATG+AGG 0.586915 3.1:-80463484 MS.gene48480:CDS
ACATAGGGAGGGAGATAAGG+AGG 0.588280 3.1:+80463399 None:intergenic
ACTCTAGACGCTAGGACTTG+TGG 0.590126 3.1:-80463167 MS.gene48480:intron
TCCAATTACCAAGTGAACAA+GGG 0.608450 3.1:-80459480 MS.gene48480:CDS
GTGTAAACTCTAACCTGCAT+TGG 0.610022 3.1:+80459661 None:intergenic
ATAAGAAATGCTGTTAAAGG+TGG 0.612023 3.1:-80463652 MS.gene48480:CDS
CAGGCAACAATAAATGTAGG+TGG 0.618980 3.1:-80460426 MS.gene48480:CDS
AGACGAGGCAAAGCTCCCAA+AGG 0.660975 3.1:+80463423 None:intergenic
GGTTGTTGCATTGATGCAGA+AGG 0.661395 3.1:-80460536 MS.gene48480:intron
GAGAGAGCAAATGTGACTAG+GGG 0.692122 3.1:+80460165 None:intergenic
CGTCCACAAGAAACTCCACA+AGG 0.707050 3.1:-80462124 MS.gene48480:CDS
GCATGAGGAGAACATTCACA+AGG 0.707385 3.1:-80463469 MS.gene48480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTCAATATTTTATAA+AGG - chr3.1:80462992-80463011 MS.gene48480:CDS 10.0%
!! AAAAGTAATGTAATTTAAGT+TGG - chr3.1:80461798-80461817 MS.gene48480:intron 15.0%
!! AAAATACATCATAATTATGT+TGG - chr3.1:80460734-80460753 MS.gene48480:intron 15.0%
!! ATAAAGAGAAAAAATAGAAA+GGG + chr3.1:80459726-80459745 None:intergenic 15.0%
!! CTAAACAATTACTAATATAA+GGG + chr3.1:80462093-80462112 None:intergenic 15.0%
!! TAAATAAACTAACAAGTTAT+TGG - chr3.1:80463269-80463288 MS.gene48480:intron 15.0%
!! TACATAATTGATTATTTCAT+TGG + chr3.1:80460172-80460191 None:intergenic 15.0%
!! TACTTGATAAATTATTATGA+AGG - chr3.1:80461754-80461773 MS.gene48480:intron 15.0%
!!! AAAGTAATGTAATTTAAGTT+GGG - chr3.1:80461799-80461818 MS.gene48480:intron 15.0%
!!! ATATTTTCAGAGATTATATT+TGG + chr3.1:80460996-80461015 None:intergenic 15.0%
!!! TTTACATTGATAATTATTTG+AGG - chr3.1:80459789-80459808 MS.gene48480:intron 15.0%
!! AAATCTAAAAACTGTATTGA+AGG - chr3.1:80461074-80461093 MS.gene48480:intron 20.0%
!! AAATGCATAATTACCAAAAT+AGG + chr3.1:80461826-80461845 None:intergenic 20.0%
!! CAAGACTATAATAATATTGA+AGG + chr3.1:80459859-80459878 None:intergenic 20.0%
!! CCTAAACAATTACTAATATA+AGG + chr3.1:80462094-80462113 None:intergenic 20.0%
!! CCTTATATTAGTAATTGTTT+AGG - chr3.1:80462091-80462110 MS.gene48480:CDS 20.0%
!! GATAAAGAGAAAAAATAGAA+AGG + chr3.1:80459727-80459746 None:intergenic 20.0%
!! GTTTATTTACAAAACAATAG+TGG + chr3.1:80463258-80463277 None:intergenic 20.0%
!! TACCTAAAACTAAACTTATA+AGG + chr3.1:80463696-80463715 None:intergenic 20.0%
!! TGAAATAGCTTAATCATAAT+CGG + chr3.1:80460200-80460219 None:intergenic 20.0%
!! TTAAATGTAATCATATGTGT+CGG - chr3.1:80459815-80459834 MS.gene48480:intron 20.0%
!! TTTATCTTGAATATCAGTAA+TGG - chr3.1:80462325-80462344 MS.gene48480:intron 20.0%
!!! ATACAGTTTTTAGATTTTAG+AGG + chr3.1:80461071-80461090 None:intergenic 20.0%
!!! TACAACATACTTTTAAATTG+TGG - chr3.1:80460613-80460632 MS.gene48480:intron 20.0%
!!! TCTTATGAATTAGTTTTGTT+TGG + chr3.1:80461873-80461892 None:intergenic 20.0%
!!! TGACCTACTTTAAAAATATT+AGG - chr3.1:80463153-80463172 MS.gene48480:CDS 20.0%
!!! TTTTTGCTCATTAATTAATG+CGG - chr3.1:80462622-80462641 MS.gene48480:CDS 20.0%
! AAATACCAATCTAACATCTT+TGG + chr3.1:80463537-80463556 None:intergenic 25.0%
! AACAAATTACAAAGAAAGCA+AGG + chr3.1:80461461-80461480 None:intergenic 25.0%
! ACAAATTACAAAGAAAGCAA+GGG + chr3.1:80461460-80461479 None:intergenic 25.0%
! ACATAATGTACTATAGATCA+CGG + chr3.1:80460339-80460358 None:intergenic 25.0%
! ACATTATGTGACAAGAATAT+TGG - chr3.1:80460350-80460369 MS.gene48480:intron 25.0%
! AGAAAAAGCTACATTTGAAA+AGG + chr3.1:80462765-80462784 None:intergenic 25.0%
! AGTCTATGATAGAGATTTAA+TGG + chr3.1:80461581-80461600 None:intergenic 25.0%
! CAAACAGATCACATTATTAA+AGG - chr3.1:80462840-80462859 MS.gene48480:intron 25.0%
! CTTTAATAATGTGATCTGTT+TGG + chr3.1:80462842-80462861 None:intergenic 25.0%
! GTCTATGATAGAGATTTAAT+GGG + chr3.1:80461580-80461599 None:intergenic 25.0%
! TAAAAACTGTATTGAAGGAA+CGG - chr3.1:80461079-80461098 MS.gene48480:intron 25.0%
! TAGTTGAGTATGTACATATT+TGG - chr3.1:80460220-80460239 MS.gene48480:CDS 25.0%
! TCCAAATGATAGTACAAAAT+TGG - chr3.1:80460088-80460107 MS.gene48480:intron 25.0%
! TTATTCCAAAGATGTTAGAT+TGG - chr3.1:80463529-80463548 MS.gene48480:intron 25.0%
! TTGAAAATATCCACATGTAT+CGG - chr3.1:80462395-80462414 MS.gene48480:intron 25.0%
! TTGAAGTGTGCATTAAAAAT+AGG + chr3.1:80463354-80463373 None:intergenic 25.0%
!! ACTTTAAAAATATTAGGCCT+GGG - chr3.1:80463159-80463178 MS.gene48480:CDS 25.0%
!! AGAGTGATTTTACTAACATA+GGG + chr3.1:80459703-80459722 None:intergenic 25.0%
!! ATTTTTACAAATTGTGAGTG+AGG + chr3.1:80463669-80463688 None:intergenic 25.0%
!! GATGTGAATTGATTTATGTT+TGG + chr3.1:80461917-80461936 None:intergenic 25.0%
!! TAATTGGAATTTTTGCCATT+TGG + chr3.1:80460484-80460503 None:intergenic 25.0%
!! TACTTTAAAAATATTAGGCC+TGG - chr3.1:80463158-80463177 MS.gene48480:CDS 25.0%
!! TCAACTGGAATTTTCTTAAT+TGG + chr3.1:80460500-80460519 None:intergenic 25.0%
!! TCCAATTTTGTACTATCATT+TGG + chr3.1:80460092-80460111 None:intergenic 25.0%
!!! ACACTAGATATTTTTCTAGT+AGG + chr3.1:80462256-80462275 None:intergenic 25.0%
!!! AGGCCTAATATTTTTAAAGT+AGG + chr3.1:80463159-80463178 None:intergenic 25.0%
!!! TCTAATTTTCTGAAATTTGC+AGG - chr3.1:80462117-80462136 MS.gene48480:CDS 25.0%
!!! TCTTTTCTTTGTTTATCATC+TGG + chr3.1:80460407-80460426 None:intergenic 25.0%
!!! TGAATTTTTTCAACTTTCAC+AGG - chr3.1:80459567-80459586 MS.gene48480:CDS 25.0%
!!! TGAGAAATTTTTTTTGTGAG+TGG + chr3.1:80460794-80460813 None:intergenic 25.0%
!!! TGCCTTATAAGTTTAGTTTT+AGG - chr3.1:80463691-80463710 MS.gene48480:CDS 25.0%
AAAGAAAGCAAGGGTAAAAT+AGG + chr3.1:80461451-80461470 None:intergenic 30.0%
AACATGTCACACATCTTTAA+AGG + chr3.1:80461422-80461441 None:intergenic 30.0%
AATTACTATCAATGTCGACA+TGG + chr3.1:80462359-80462378 None:intergenic 30.0%
AATTCCTCAAAACTCTCAAA+AGG - chr3.1:80459407-80459426 MS.gene48480:CDS 30.0%
AGCAAGAAATCCATATGTAA+AGG - chr3.1:80460458-80460477 MS.gene48480:intron 30.0%
ATAAGAAATGCTGTTAAAGG+TGG - chr3.1:80459432-80459451 MS.gene48480:CDS 30.0%
ATCAAGCAAAGACAGAAAAT+TGG - chr3.1:80459461-80459480 MS.gene48480:CDS 30.0%
ATGTTGTCATATGCTAAACT+TGG + chr3.1:80462597-80462616 None:intergenic 30.0%
ATTCAGGCAACAATAAATGT+AGG - chr3.1:80462655-80462674 MS.gene48480:CDS 30.0%
ATTCCTCAAAACTCTCAAAA+GGG - chr3.1:80459408-80459427 MS.gene48480:CDS 30.0%
CATCCAAACAACATGTTTAA+GGG + chr3.1:80461298-80461317 None:intergenic 30.0%
CTTACATATTTCCAGTGATA+TGG + chr3.1:80462730-80462749 None:intergenic 30.0%
GAATTTGGAAAGAGAGATAT+TGG - chr3.1:80461128-80461147 MS.gene48480:intron 30.0%
GATCATTCATGTTCTCTAAA+TGG + chr3.1:80463332-80463351 None:intergenic 30.0%
GCAATTAATCAGTCTTTCAA+TGG + chr3.1:80463203-80463222 None:intergenic 30.0%
TATCATCTGGTAAGACAAAA+AGG + chr3.1:80460394-80460413 None:intergenic 30.0%
TCATCCAAACAACATGTTTA+AGG + chr3.1:80461299-80461318 None:intergenic 30.0%
TGATTTCTTACTTCAGCAAT+TGG + chr3.1:80460939-80460958 None:intergenic 30.0%
TGCTAGAAGAAGAAATAGTT+AGG - chr3.1:80459952-80459971 MS.gene48480:intron 30.0%
TGTAGTGATTTATTGTCAAC+TGG + chr3.1:80460515-80460534 None:intergenic 30.0%
TGTTGTCATATGCTAAACTT+GGG + chr3.1:80462596-80462615 None:intergenic 30.0%
TTAAAAAAACTCTAGACGCT+AGG - chr3.1:80459909-80459928 MS.gene48480:intron 30.0%
TTTCAGGCTTTCATAGAAAA+TGG - chr3.1:80462504-80462523 MS.gene48480:intron 30.0%
! AAGAGAAGGTCTTACATTTT+AGG - chr3.1:80459979-80459998 MS.gene48480:intron 30.0%
! ATACTGCAACATTTTCAACT+AGG - chr3.1:80460114-80460133 MS.gene48480:intron 30.0%
! ATCCAGGAATTTTGAATAGT+GGG - chr3.1:80460664-80460683 MS.gene48480:intron 30.0%
! GAGAGTGATTTTACTAACAT+AGG + chr3.1:80459704-80459723 None:intergenic 30.0%
! GGTAAAATGGTTTTCAAATG+CGG + chr3.1:80460829-80460848 None:intergenic 30.0%
! TGATTTTACTAACATAGGGA+GGG + chr3.1:80459699-80459718 None:intergenic 30.0%
! TTTTGTTAGGTTTAACTCAC+TGG - chr3.1:80461554-80461573 MS.gene48480:intron 30.0%
!! ATGACAATAAGAAGCACTTA+TGG - chr3.1:80462880-80462899 MS.gene48480:intron 30.0%
!! TAAAAGTTCTGCTTTGTTTC+AGG - chr3.1:80462488-80462507 MS.gene48480:intron 30.0%
!! TCAAATGTAGCTTTTTCTGT+TGG - chr3.1:80462767-80462786 MS.gene48480:intron 30.0%
!!! ACATGACAAACCTGTTTTTT+AGG + chr3.1:80460554-80460573 None:intergenic 30.0%
!!! ATTTAAGTTGGGACCTATTT+TGG - chr3.1:80461810-80461829 MS.gene48480:intron 30.0%
!!! ATTTTTTCAACTTTCACAGG+TGG - chr3.1:80459570-80459589 MS.gene48480:CDS 30.0%
AAAAGCAAGTTTGTGAAACG+TGG - chr3.1:80461323-80461342 MS.gene48480:intron 35.0%
AAAAGGAGATACATGAAGTC+AGG + chr3.1:80460377-80460396 None:intergenic 35.0%
AAAGACTTAGCAGTTTGTGT+TGG + chr3.1:80461200-80461219 None:intergenic 35.0%
AAAGGAGATACATGAAGTCA+GGG + chr3.1:80460376-80460395 None:intergenic 35.0%
AATAGTTAGGCTTGAAGAGA+AGG - chr3.1:80459965-80459984 MS.gene48480:intron 35.0%
ACTTAGAATCATTGCTAGAC+TGG - chr3.1:80463574-80463593 MS.gene48480:intron 35.0%
AGCCAAAAGAGAATACTTAC+AGG - chr3.1:80463476-80463495 MS.gene48480:CDS 35.0%
AGCCATTACTTTCAGATTGA+AGG + chr3.1:80462465-80462484 None:intergenic 35.0%
AGCTACATTTGAAAAGGACA+AGG + chr3.1:80462759-80462778 None:intergenic 35.0%
AGGTTGAAGAAGATGGTAAT+GGG - chr3.1:80461529-80461548 MS.gene48480:intron 35.0%
ATACCAAACACACACTACAT+CGG - chr3.1:80462005-80462024 MS.gene48480:CDS 35.0%
ATCAATGCAACAACCATTTC+AGG + chr3.1:80462543-80462562 None:intergenic 35.0%
ATCCATATGTAAAGGCCAAA+TGG - chr3.1:80460466-80460485 MS.gene48480:intron 35.0%
CAACATGTTTAAGGGCAAAA+CGG + chr3.1:80461290-80461309 None:intergenic 35.0%
CCAAATTCCAAGATACCATA+AGG + chr3.1:80461116-80461135 None:intergenic 35.0%
CCTTAAAATGCAGTGTTCTA+TGG + chr3.1:80462704-80462723 None:intergenic 35.0%
CCTTATGGTATCTTGGAATT+TGG - chr3.1:80461113-80461132 MS.gene48480:intron 35.0%
CTTGAATATCAGTAATGGCA+AGG - chr3.1:80462330-80462349 MS.gene48480:intron 35.0%
CTTGCACATAATTGCTTGTA+TGG + chr3.1:80461155-80461174 None:intergenic 35.0%
GATAGGTGTGTAAATAGGTT+AGG - chr3.1:80463102-80463121 MS.gene48480:CDS 35.0%
GGCATAAGAAATGCTGTTAA+AGG - chr3.1:80459429-80459448 MS.gene48480:CDS 35.0%
GTGTGTAAATAGGTTAGGTT+AGG - chr3.1:80463107-80463126 MS.gene48480:CDS 35.0%
TAGATGTACCTCAATTACTG+TGG - chr3.1:80463035-80463054 MS.gene48480:CDS 35.0%
TATGGTTGTGGCATTTAACA+AGG + chr3.1:80462686-80462705 None:intergenic 35.0%
TCCAATTACCAAGTGAACAA+GGG - chr3.1:80463604-80463623 MS.gene48480:intron 35.0%
TCTCAGATAGGTGTGTAAAT+AGG - chr3.1:80463097-80463116 MS.gene48480:CDS 35.0%
TGAAACACTGATACAAACAC+CGG - chr3.1:80459749-80459768 MS.gene48480:intron 35.0%
TGCCTTCAATCTGAAAGTAA+TGG - chr3.1:80462460-80462479 MS.gene48480:intron 35.0%
TGGAAAAAGTAAACCACGTT+TGG + chr3.1:80461263-80461282 None:intergenic 35.0%
TGTTTGAGCTACTGGTAAAA+TGG + chr3.1:80460842-80460861 None:intergenic 35.0%
TTAATCAGTCTTTCAATGGC+CGG + chr3.1:80463199-80463218 None:intergenic 35.0%
TTGCCCTTAAACATGTTGTT+TGG - chr3.1:80461292-80461311 MS.gene48480:intron 35.0%
TTTACTGTTGTTGTGGCAAT+AGG - chr3.1:80461509-80461528 MS.gene48480:intron 35.0%
TTTCGATCCTTATGGTATCT+TGG - chr3.1:80461106-80461125 MS.gene48480:intron 35.0%
! AGCCTGTAAGTATTCTCTTT+TGG + chr3.1:80463481-80463500 None:intergenic 35.0%
! ATAGGTTGAAGAAGAAGCTT+AGG - chr3.1:80459593-80459612 MS.gene48480:CDS 35.0%
! CCATAGAACACTGCATTTTA+AGG - chr3.1:80462701-80462720 MS.gene48480:intron 35.0%
! GAGTTTGAGAGAATTGCTTT+TGG + chr3.1:80461954-80461973 None:intergenic 35.0%
! GATCCAGGAATTTTGAATAG+TGG - chr3.1:80460663-80460682 MS.gene48480:intron 35.0%
! GTGATTTTACTAACATAGGG+AGG + chr3.1:80459700-80459719 None:intergenic 35.0%
! TAGGTTGAAGAAGATGGTAA+TGG - chr3.1:80461528-80461547 MS.gene48480:intron 35.0%
! TCCAGGAATTTTGAATAGTG+GGG - chr3.1:80460665-80460684 MS.gene48480:intron 35.0%
!! AATAAGAAGCACTTATGGAC+TGG - chr3.1:80462885-80462904 MS.gene48480:intron 35.0%
!! AATGTAGCTTTTTCTGTTGG+TGG - chr3.1:80462770-80462789 MS.gene48480:intron 35.0%
!! ATGTAGCTTTTTCTGTTGGT+GGG - chr3.1:80462771-80462790 MS.gene48480:intron 35.0%
!! CATTGGAAAGAGCTTTGAAT+AGG - chr3.1:80459638-80459657 MS.gene48480:CDS 35.0%
!! TGCTGATTCATGATGAGATT+TGG - chr3.1:80463400-80463419 MS.gene48480:intron 35.0%
!!! ATGCGGTTTTCTTGTTATTC+AGG - chr3.1:80462639-80462658 MS.gene48480:CDS 35.0%
!!! ATGGTAATGGGCTTTTTGTT+AGG - chr3.1:80461541-80461560 MS.gene48480:intron 35.0%
!!! TGACAAACCTGTTTTTTAGG+AGG + chr3.1:80460551-80460570 None:intergenic 35.0%
!!! TGAGAGTTTTGAGGAATTCT+AGG + chr3.1:80459405-80459424 None:intergenic 35.0%
!!! TTTTAAGGCTTCCATATCAC+TGG - chr3.1:80462716-80462735 MS.gene48480:intron 35.0%
AAAATGCAAGCTTCTCTTGG+TGG + chr3.1:80462187-80462206 None:intergenic 40.0%
AAGAGAGAGCAAATGTGACT+AGG + chr3.1:80462924-80462943 None:intergenic 40.0%
AATGCAGTGTTCTATGGTTG+TGG + chr3.1:80462698-80462717 None:intergenic 40.0%
ACAACCATTTCAGGACTTTC+TGG + chr3.1:80462534-80462553 None:intergenic 40.0%
AGAGAGAGCAAATGTGACTA+GGG + chr3.1:80462923-80462942 None:intergenic 40.0%
AGTGGTCACTAAAATCAGAG+CGG + chr3.1:80460278-80460297 None:intergenic 40.0%
ATTGATGTAGCGTCTCAGAT+AGG - chr3.1:80463085-80463104 MS.gene48480:CDS 40.0%
CAAATGCTCCAGTTTCATCT+TGG + chr3.1:80460042-80460061 None:intergenic 40.0%
CACAGCATCACATATTGAGA+AGG - chr3.1:80463443-80463462 MS.gene48480:CDS 40.0%
CAGGCAACAATAAATGTAGG+TGG - chr3.1:80462658-80462677 MS.gene48480:CDS 40.0%
CATACCAGAAAGTCCTGAAA+TGG - chr3.1:80462527-80462546 MS.gene48480:intron 40.0%
CTCCAATTACCAAGTGAACA+AGG - chr3.1:80463603-80463622 MS.gene48480:intron 40.0%
GAATACTTACAGGCTGCAAT+TGG - chr3.1:80463486-80463505 MS.gene48480:CDS 40.0%
GAATGAGTACACCAACTTTC+AGG - chr3.1:80461045-80461064 MS.gene48480:intron 40.0%
GATGTAGTGTGTGTTTGGTA+TGG + chr3.1:80462006-80462025 None:intergenic 40.0%
GTCCAAGTTTCAAAGTGTAG+TGG + chr3.1:80460296-80460315 None:intergenic 40.0%
GTGTAAACTCTAACCTGCAT+TGG + chr3.1:80463426-80463445 None:intergenic 40.0%
GTTTCTTCTACGTGTGTGTT+TGG - chr3.1:80461220-80461239 MS.gene48480:intron 40.0%
TCACAACACCACAGTAATTG+AGG + chr3.1:80463046-80463065 None:intergenic 40.0%
TCCAAAATGCAAGCTTCTCT+TGG + chr3.1:80462190-80462209 None:intergenic 40.0%
TTAAATTGTGGTCGTGACTG+CGG - chr3.1:80460625-80460644 MS.gene48480:intron 40.0%
TTCAACTTTCACAGGTGGAT+AGG - chr3.1:80459575-80459594 MS.gene48480:CDS 40.0%
TTCTACGTGTGTGTTTGGTA+TGG - chr3.1:80461225-80461244 MS.gene48480:intron 40.0%
TTCTTCAGTGTTTGAGCTAC+TGG + chr3.1:80460850-80460869 None:intergenic 40.0%
TTTGGACTTTCATCTCCTTG+TGG + chr3.1:80460978-80460997 None:intergenic 40.0%
! ACCAAGAGAAGCTTGCATTT+TGG - chr3.1:80462186-80462205 MS.gene48480:intron 40.0%
! AGCTTGCTTTACTGTTGTTG+TGG - chr3.1:80461502-80461521 MS.gene48480:intron 40.0%
! CAAGATGAAACTGGAGCATT+TGG - chr3.1:80460040-80460059 MS.gene48480:intron 40.0%
! CCAGGAATTTTGAATAGTGG+GGG - chr3.1:80460666-80460685 MS.gene48480:intron 40.0%
! CTTGTTCACTTGGTAATTGG+AGG + chr3.1:80463605-80463624 None:intergenic 40.0%
! GAAGGTCTTACATTTTAGGC+AGG - chr3.1:80459983-80460002 MS.gene48480:intron 40.0%
! GCTTTTCTTCTTTTGCTGAG+AGG - chr3.1:80461640-80461659 MS.gene48480:intron 40.0%
! GTGGTTTTTGTCTTCAAACG+TGG - chr3.1:80461342-80461361 MS.gene48480:intron 40.0%
! TCCCTTGTTCACTTGGTAAT+TGG + chr3.1:80463608-80463627 None:intergenic 40.0%
! TGCCATTTGGCCTTTACATA+TGG + chr3.1:80460471-80460490 None:intergenic 40.0%
! TGGCAATAGGTTGAAGAAGA+TGG - chr3.1:80461522-80461541 MS.gene48480:intron 40.0%
! TTTCAGATTGAAGGCATACC+CGG + chr3.1:80462456-80462475 None:intergenic 40.0%
!! AAGAGCTTTGAATAGGCCTT+TGG - chr3.1:80459645-80459664 MS.gene48480:CDS 40.0%
!! ACGGAGTTTTTCGATCCTTA+TGG - chr3.1:80461098-80461117 MS.gene48480:intron 40.0%
!! AGAGCTTTGAATAGGCCTTT+GGG - chr3.1:80459646-80459665 MS.gene48480:CDS 40.0%
!! ATGCCCTTTTGAGAGTTTTG+AGG + chr3.1:80459414-80459433 None:intergenic 40.0%
!! GACCACTACACTTTGAAACT+TGG - chr3.1:80460291-80460310 MS.gene48480:intron 40.0%
!! GATTTTAGAGGCCTGAAAGT+TGG + chr3.1:80461059-80461078 None:intergenic 40.0%
!! TCACCAGGAAGAGTTGTTTT+AGG + chr3.1:80460140-80460159 None:intergenic 40.0%
AACGTGTCAATGTCGTGTTC+CGG + chr3.1:80459771-80459790 None:intergenic 45.0%
AGGCCTAAAACAACTCTTCC+TGG - chr3.1:80460134-80460153 MS.gene48480:intron 45.0%
ATGCTCCAGTTTCATCTTGG+AGG + chr3.1:80460039-80460058 None:intergenic 45.0%
CAACCGATGTAGTGTGTGTT+TGG + chr3.1:80462011-80462030 None:intergenic 45.0%
CCCCCACTATTCAAAATTCC+TGG + chr3.1:80460669-80460688 None:intergenic 45.0%
CTAACATAGGGAGGGAGATA+AGG + chr3.1:80459691-80459710 None:intergenic 45.0%
CTGTGAGCCTCCTAAAAAAC+AGG - chr3.1:80460541-80460560 MS.gene48480:CDS 45.0%
GAAGAAGAAGCTTAGGCATG+AGG - chr3.1:80459600-80459619 MS.gene48480:CDS 45.0%
GAGAGAGCAAATGTGACTAG+GGG + chr3.1:80462922-80462941 None:intergenic 45.0%
GCAAGTGATCAACTTACAGC+AGG + chr3.1:80462964-80462983 None:intergenic 45.0%
GCATGAGGAGAACATTCACA+AGG - chr3.1:80459615-80459634 MS.gene48480:CDS 45.0%
GCTCAGATTCGTAGCTTCTA+CGG - chr3.1:80461375-80461394 MS.gene48480:intron 45.0%
GCTTCTTTCCCTTGTTCACT+TGG + chr3.1:80463615-80463634 None:intergenic 45.0%
GGAGAACATTCACAAGGCAT+TGG - chr3.1:80459621-80459640 MS.gene48480:CDS 45.0%
GTAGTGTGTGTTTGGTATGG+CGG + chr3.1:80462003-80462022 None:intergenic 45.0%
GTCACATTTGCTCTCTCTTG+TGG - chr3.1:80462925-80462944 MS.gene48480:intron 45.0%
GTCATCCTCCAAGATGAAAC+TGG - chr3.1:80460031-80460050 MS.gene48480:intron 45.0%
TCTCCTTGTGGAGTTTCTTG+TGG + chr3.1:80460966-80460985 None:intergenic 45.0%
TGATGAGATTTGGCCAATGC+AGG - chr3.1:80463410-80463429 MS.gene48480:CDS 45.0%
TTGCTCTCTCTTGTGGAACT+TGG - chr3.1:80462932-80462951 MS.gene48480:intron 45.0%
TTTAAGGGCAAAACGGCGTT+TGG + chr3.1:80461283-80461302 None:intergenic 45.0%
! CATTGGACTAGATACTCACC+AGG + chr3.1:80460155-80460174 None:intergenic 45.0%
! GGTTGTTGCATTGATGCAGA+AGG - chr3.1:80462548-80462567 MS.gene48480:CDS 45.0%
! GTGTTTGGTATGGCGTTTTG+AGG - chr3.1:80461235-80461254 MS.gene48480:intron 45.0%
! TCCACATGTATCGGTCATGT+CGG - chr3.1:80462404-80462423 MS.gene48480:intron 45.0%
! TTGCATTGATGCAGAAGGTG+TGG - chr3.1:80462553-80462572 MS.gene48480:CDS 45.0%
! TTTTCCTACTTTGCAGCAGC+AGG - chr3.1:80460893-80460912 MS.gene48480:CDS 45.0%
!!! AATTTTCAATATTTTATAAA+GGG - chr3.1:80462993-80463012 MS.gene48480:CDS 5.0%
!!! TTATACTTTTAAATATAAAA+TGG + chr3.1:80460715-80460734 None:intergenic 5.0%
ACATAGGGAGGGAGATAAGG+AGG + chr3.1:80459688-80459707 None:intergenic 50.0%
ACCGACATGACCGATACATG+TGG + chr3.1:80462408-80462427 None:intergenic 50.0%
ACTCTAGACGCTAGGACTTG+TGG - chr3.1:80459917-80459936 MS.gene48480:intron 50.0%
AGATTCGTAGCTTCTACGGC+AGG - chr3.1:80461379-80461398 MS.gene48480:intron 50.0%
AGTTCCTGCTGCTGCAAAGT+AGG + chr3.1:80460900-80460919 None:intergenic 50.0%
ATTCGTAGCTTCTACGGCAG+GGG - chr3.1:80461381-80461400 MS.gene48480:intron 50.0%
CGTCCACAAGAAACTCCACA+AGG - chr3.1:80460960-80460979 MS.gene48480:intron 50.0%
CTTTGCAGCAGCAGGAACTA+AGG - chr3.1:80460901-80460920 MS.gene48480:CDS 50.0%
GATTCGTAGCTTCTACGGCA+GGG - chr3.1:80461380-80461399 MS.gene48480:intron 50.0%
GCATTTGGAAGCTGCTTCTG+TGG - chr3.1:80460055-80460074 MS.gene48480:intron 50.0%
TGTGTGTTTGGTATGGCGGT+GGG + chr3.1:80461999-80462018 None:intergenic 50.0%
! CAAGCTTCTCTTGGTGGTTG+AGG + chr3.1:80462181-80462200 None:intergenic 50.0%
! GTATCGGTCATGTCGGTGTT+CGG - chr3.1:80462411-80462430 MS.gene48480:intron 50.0%
! TAGGCCTGGGCACGTTTTTA+AGG - chr3.1:80463172-80463191 MS.gene48480:intron 50.0%
!! TGTTCGGCATTGACACATGC+CGG - chr3.1:80462427-80462446 MS.gene48480:intron 50.0%
!!! CTGGGCACGTTTTTAAGGTC+CGG - chr3.1:80463177-80463196 MS.gene48480:intron 50.0%
ACTGCGGTTACACTCAGGGA+CGG - chr3.1:80460641-80460660 MS.gene48480:intron 55.0%
AGACGAGGCAAAGCTCCCAA+AGG + chr3.1:80459664-80459683 None:intergenic 55.0%
ATTGACACATGCCGGACACC+GGG - chr3.1:80462435-80462454 MS.gene48480:intron 55.0%
CATTGACACATGCCGGACAC+CGG - chr3.1:80462434-80462453 MS.gene48480:intron 55.0%
CGGACCTTAAAAACGTGCCC+AGG + chr3.1:80463179-80463198 None:intergenic 55.0%
CGTGACTGCGGTTACACTCA+GGG - chr3.1:80460637-80460656 MS.gene48480:intron 55.0%
GCTAGGACTTGTGGCTGAAG+TGG - chr3.1:80459926-80459945 MS.gene48480:intron 55.0%
GGGAGATAAGGAGGAAGACG+AGG + chr3.1:80459679-80459698 None:intergenic 55.0%
GTGTGTGTTTGGTATGGCGG+TGG + chr3.1:80462000-80462019 None:intergenic 55.0%
GTGTGTTTGGTATGGCGGTG+GGG + chr3.1:80461998-80462017 None:intergenic 55.0%
TCGTGACTGCGGTTACACTC+AGG - chr3.1:80460636-80460655 MS.gene48480:intron 55.0%
TTACACTCAGGGACGGATCC+AGG - chr3.1:80460648-80460667 MS.gene48480:intron 55.0%
TTCTACGGCAGGGGAAAACG+TGG - chr3.1:80461390-80461409 MS.gene48480:intron 55.0%
! TTGAAGGCATACCCGGTGTC+CGG + chr3.1:80462449-80462468 None:intergenic 55.0%
!! ACTGTGGTGTTGTGATCGCG+AGG - chr3.1:80463051-80463070 MS.gene48480:CDS 55.0%
!!! GCGTTTTGAGGCTCCAAACG+TGG - chr3.1:80461247-80461266 MS.gene48480:intron 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 80459375 80463731 80459375 ID=MS.gene48480
chr3.1 mRNA 80459375 80463731 80459375 ID=MS.gene48480.t1;Parent=MS.gene48480
chr3.1 exon 80463609 80463731 80463609 ID=MS.gene48480.t1.exon1;Parent=MS.gene48480.t1
chr3.1 CDS 80463609 80463731 80463609 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80463401 80463517 80463401 ID=MS.gene48480.t1.exon2;Parent=MS.gene48480.t1
chr3.1 CDS 80463401 80463517 80463401 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80462951 80463182 80462951 ID=MS.gene48480.t1.exon3;Parent=MS.gene48480.t1
chr3.1 CDS 80462951 80463182 80462951 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80462544 80462698 80462544 ID=MS.gene48480.t1.exon4;Parent=MS.gene48480.t1
chr3.1 CDS 80462544 80462698 80462544 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80461872 80462194 80461872 ID=MS.gene48480.t1.exon5;Parent=MS.gene48480.t1
chr3.1 CDS 80461872 80462194 80461872 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80460868 80460967 80460868 ID=MS.gene48480.t1.exon6;Parent=MS.gene48480.t1
chr3.1 CDS 80460868 80460967 80460868 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80460537 80460596 80460537 ID=MS.gene48480.t1.exon7;Parent=MS.gene48480.t1
chr3.1 CDS 80460537 80460596 80460537 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80460362 80460445 80460362 ID=MS.gene48480.t1.exon8;Parent=MS.gene48480.t1
chr3.1 CDS 80460362 80460445 80460362 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80460140 80460283 80460140 ID=MS.gene48480.t1.exon9;Parent=MS.gene48480.t1
chr3.1 CDS 80460140 80460283 80460140 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
chr3.1 exon 80459375 80459707 80459375 ID=MS.gene48480.t1.exon10;Parent=MS.gene48480.t1
chr3.1 CDS 80459375 80459707 80459375 ID=cds.MS.gene48480.t1;Parent=MS.gene48480.t1
Gene Sequence

>MS.gene48480

ATGACTTCAGTTTCAATAAACAAAGATCCTAGAATTCCTCAAAACTCTCAAAAGGGCATAAGAAATGCTGTTAAAGGTGGAAAAACATCAAGCAAAGACAGAAAATTGGCTTTGCAACAAGATGTAATGTTAATATCATTGTTTTCTTCTTCTGTTTCTTTCATTTTCTTTGCTTCTAACTTGAAACTGAGATGAATTTTTTCAACTTTCACAGGTGGATAGGTTGAAGAAGAAGCTTAGGCATGAGGAGAACATTCACAAGGCATTGGAAAGAGCTTTGAATAGGCCTTTGGGAGCTTTGCCTCGTCTTCCTCCTTATCTCCCTCCCTATGTTAGTAAAATCACTCTCCCTTTCTATTTTTTCTCTTTATCTTTGAAACACTGATACAAACACCGGAACACGACATTGACACGTTTACATTGATAATTATTTGAGGAAATTAAATGTAATCATATGTGTCGGTGTCAGACATAAGACACGCCTTCAATATTATTATAGTCTTGAAATTGAGTATTTGAGTGATGATTTTTATCTTAAAAAAACTCTAGACGCTAGGACTTGTGGCTGAAGTGGCTGTGCTAGAAGAAGAAATAGTTAGGCTTGAAGAGAAGGTCTTACATTTTAGGCAGGATTTGAATCAAGAAGCAGTTTACATGTCATCCTCCAAGATGAAACTGGAGCATTTGGAAGCTGCTTCTGTGGATAATGCAAATCCAAATGATAGTACAAAATTGGATCATACTGCAACATTTTCAACTAGGCCTAAAACAACTCTTCCTGGTGAGTATCTAGTCCAATGAAATAATCAATTATGTAACATACCGATTATGATTAAGCTATTTCATAGTTGAGTATGTACATATTTGGATTGACAGTGAGTTTAATAAAATGACAGTGTGCCGCTCTGATTTTAGTGACCACTACACTTTGAAACTTGGACAAAATCACAGTGTTGCTTCACCGTGATCTATAGTACATTATGTGACAAGAATATTGGCCCTGACTTCATGTATCTCCTTTTTGTCTTACCAGATGATAAACAAAGAAAAGAGATTCAATCATGCACTCATTCTTTCAAGAGCAGCAAGAAATCCATATGTAAAGGCCAAATGGCAAAAATTCCAATTAAGAAAATTCCAGTTGACAATAAATCACTACAAAAACACTGTGAGCCTCCTAAAAAACAGGTTTGTCATGTGTAAAAATAGTTTACAGTTTGTGTTATATCATTAGTTACTACAACATACTTTTAAATTGTGGTCGTGACTGCGGTTACACTCAGGGACGGATCCAGGAATTTTGAATAGTGGGGGCACTGTATATACACACACACACACCATTTTATATTTAAAAGTATAAAAATACATCATAATTATGTTGGATAAATAATTTATATTAATAGATAGCATGTTATACCACTCACAAAAAAAATTTCTCAAAACATTGCAGACCGCATTTGAAAACCATTTTACCAGTAGCTCAAACACTGAAGAATTTTTCATGTCAATGAATGAGAGTTTTCCTACTTTGCAGCAGCAGGAACTAAGGCTGAACAACAAACCAATTGCTGAAGTAAGAAATCATCGTCCACAAGAAACTCCACAAGGAGATGAAAGTCCAAATATAATCTCTGAAAATATTCTCAAGTGTTTAACTAGCATTCTCTTGAGAATGAGTACACCAACTTTCAGGCCTCTAAAATCTAAAAACTGTATTGAAGGAACGGAGTTTTTCGATCCTTATGGTATCTTGGAATTTGGAAAGAGAGATATTGGTCCATACAAGCAATTATGTGCAAGTATTGAAGCTGAATATTTCAATCCAACACAAACTGCTAAGTCTTTGTTTCTTCTACGTGTGTGTTTGGTATGGCGTTTTGAGGCTCCAAACGTGGTTTACTTTTTCCAAACGCCGTTTTGCCCTTAAACATGTTGTTTGGATGAATGAAAAAGCAAGTTTGTGAAACGTGGTTTTTGTCTTCAAACGTGGTTTTGCTGAAGCTCAGATTCGTAGCTTCTACGGCAGGGGAAAACGTGGTTTCAGCCTTTAAAGATGTGTGACATGTTTATCATCCTATTTTACCCTTGCTTTCTTTGTAATTTGTTTTCTGATATTTTCAGATCTGCAGCTTGCTTTACTGTTGTTGTGGCAATAGGTTGAAGAAGATGGTAATGGGCTTTTTGTTAGGTTTAACTCACTGGCCCATTAAATCTCTATCATAGACTTTCTATTATTTTTTTTATTTTATTTTTTTGTGATGATTTGCTTTTCTTCTTTTGCTGAGAGGATTTTTTTTTATTGTTAAAAAAAGTTAAAATAATTTAATGAAACTAATGTAAAGAAAACAATTTATAAACATATAATTTTTTTTTACGTATTACTTGATAAATTATTATGAAGGAAAATAAACAAAGTTAAATATAAAAGTAATGTAATTTAAGTTGGGACCTATTTTGGTAATTATGCATTTAAAAGCAATTTTGATTCAAACTATCCAAACAAAACTAATTCATAAGAATCACTTTTAAACAAGTGTATCCAAACATAAATCAATTCACATCTAACTCACTTTTAACCAAAAGCAATTCTCTCAAACTCAATTCTATCAAAATCAATTATCCCCACCGCCATACCAAACACACACTACATCGGTTGAAGTATGTTACATTCTAATCAAATTCAAACTATAATGTTATTACATTAATTTTTTATGACCCTTATATTAGTAATTGTTTAGGTGTTCTAATTTTCTGAAATTTGCAGGATTCTTTTGAGACAACTAACATGTGTTAACATTGAAAACCTCAACCACCAAGAGAAGCTTGCATTTTGGATCAACATATATAACTCGTGTATGATGAATGTATGTCAACTTTTCCTACTAGAAAAATATCTAGTGTAATCTCACTCTAAAAATTTGTATTTATATTTTACTGTTTTCTGTCAACTTTTATCTTGAATATCAGTAATGGCAAGGACACCATGTCGACATTGATAGTAATTTACGAAAATTGAATAATTGAAAATATCCACATGTATCGGTCATGTCGGTGTTCGGCATTGACACATGCCGGACACCGGGTATGCCTTCAATCTGAAAGTAATGGCTTATTAAAAGTTCTGCTTTGTTTCAGGCTTTCATAGAAAATGGCATACCAGAAAGTCCTGAAATGGTTGTTGCATTGATGCAGAAGGTGTGGTTTTACTTTGTTTGTTTCCCAAGTTTAGCATATGACAACATTGATTTTTTTGCTCATTAATTAATGCGGTTTTCTTGTTATTCAGGCAACAATAAATGTAGGTGGAACCTTGTTAAATGCCACAACCATAGAACACTGCATTTTAAGGCTTCCATATCACTGGAAATATGTAAGTTCTGTCCTTGTCCTTTTCAAATGTAGCTTTTTCTGTTGGTGGGAAGATATACAAAATTAATAAGCTTCTTAGTTCTTACAGCTAAATTCCAAACAGATCACATTATTAAAGGAAGTGAAAAGTCATGAAATGACAATAAGAAGCACTTATGGACTGGAATTGTCAGAACCCCTAGTCACATTTGCTCTCTCTTGTGGAACTTGGTCATCTCCTGCTGTAAGTTGATCACTTGCTTAGAATTCAATTTTCAATATTTTATAAAGGGTTAAACGTTATCACAATTCTAGATGTACCTCAATTACTGTGGTGTTGTGATCGCGAGGACATAAATAATATTGATGTAGCGTCTCAGATAGGTGTGTAAATAGGTTAGGTTAGGTTAAGCTTTACAATGCTCGAGTCTGACCTACTTTAAAAATATTAGGCCTGGGCACGTTTTTAAGGTCCGGCCATTGAAAGACTGATTAATTGCACACATAACTAATTTTTCTACAAAAACTTACACCACTATTGTTTTGTAAATAAACTAACAAGTTATTGGTTAAGTGTGATAAGTTTTATTATGATATTTAACATAACCATTTAGAGAACATGAATGATCCTATTTTTAATGCACACTTCAATTATTTCATTATTTGCATTGTCTAGTTGCTGATTCATGATGAGATTTGGCCAATGCAGGTTAGAGTTTACACAGCATCACATATTGAGAAGGAACTAGAAATAGCCAAAAGAGAATACTTACAGGCTGCAATTGGAATTTCAACATCGAAGTTTGTTATTCCAAAGATGTTAGATTGGTATTTACTTGACTTTGCAAAAGACTTAGAATCATTGCTAGACTGGATATGCCTCCAATTACCAAGTGAACAAGGGAAAGAAGCAATTAAGTTATTTGAGAAAAGAAAAATTGAACCTCACTCACAATTTGTAAAAATTATGCCTTATAAGTTTAGTTTTAGGTACTTGCTGAGCACATAA
Protein sequence

>MS.gene48480.t1

MTSVSINKDPRIPQNSQKGIRNAVKGGKTSSKDRKLALQQDVDRLKKKLRHEENIHKALERALNRPLGALPRLPPYLPPYTLGLVAEVAVLEEEIVRLEEKVLHFRQDLNQEAVYMSSSKMKLEHLEAASVDNANPNDSTKLDHTATFSTRPKTTLPDDKQRKEIQSCTHSFKSSKKSICKGQMAKIPIKKIPVDNKSLQKHCEPPKKQQELRLNNKPIAEVRNHRPQETPQGDESPNIISENILKCLTSILLRMSTPTFRPLKSKNCIEGTEFFDPYGILEFGKRDIGPYKQLCASIEAEYFNPTQTAKSLFLLRVILLRQLTCVNIENLNHQEKLAFWINIYNSCMMNAFIENGIPESPEMVVALMQKATINVGGTLLNATTIEHCILRLPYHWKYFLQLNSKQITLLKEVKSHEMTIRSTYGLELSEPLVTFALSCGTWSSPALLIHDEIWPMQVRVYTASHIEKELEIAKREYLQAAIGISTSKFVIPKMLDWYLLDFAKDLESLLDWICLQLPSEQGKEAIKLFEKRKIEPHSQFVKIMPYKFSFRYLLST