Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28568.t1 | XP_003629580.1 | 99.2 | 360 | 3 | 0 | 1 | 360 | 1 | 360 | 2.50E-207 | 731.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28568.t1 | Q9C566 | 71.1 | 360 | 103 | 1 | 1 | 359 | 1 | 360 | 5.2e-153 | 542.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28568.t1 | G7LGD2 | 99.2 | 360 | 3 | 0 | 1 | 360 | 1 | 360 | 1.8e-207 | 731.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050134 | MS.gene28568 | 0.803751 | 3.00E-49 | -1.69E-46 |
MS.gene052209 | MS.gene28568 | 0.808585 | 2.88E-50 | -1.69E-46 |
MS.gene052664 | MS.gene28568 | 0.815965 | 7.06E-52 | -1.69E-46 |
MS.gene057272 | MS.gene28568 | 0.809518 | 1.82E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28568.t1 | MTR_8g079690 | 99.167 | 360 | 3 | 0 | 1 | 360 | 1 | 360 | 0.0 | 736 |
MS.gene28568.t1 | MTR_4g086760 | 73.684 | 361 | 94 | 1 | 1 | 360 | 1 | 361 | 0.0 | 563 |
MS.gene28568.t1 | MTR_4g086760 | 73.795 | 332 | 86 | 1 | 1 | 331 | 1 | 332 | 0.0 | 521 |
MS.gene28568.t1 | MTR_4g086760 | 73.248 | 314 | 83 | 1 | 1 | 313 | 1 | 314 | 2.75e-174 | 487 |
MS.gene28568.t1 | MTR_7g116340 | 62.857 | 175 | 61 | 3 | 1 | 174 | 1 | 172 | 1.73e-69 | 215 |
MS.gene28568.t1 | MTR_4g075290 | 60.920 | 174 | 66 | 2 | 1 | 174 | 1 | 172 | 7.07e-69 | 214 |
MS.gene28568.t1 | MTR_7g095750 | 60.773 | 181 | 68 | 2 | 3 | 182 | 6 | 184 | 7.28e-69 | 228 |
MS.gene28568.t1 | MTR_3g463900 | 60.355 | 169 | 65 | 2 | 5 | 173 | 35 | 201 | 4.21e-64 | 202 |
MS.gene28568.t1 | MTR_3g070500 | 58.480 | 171 | 69 | 2 | 5 | 175 | 65 | 233 | 3.60e-63 | 201 |
MS.gene28568.t1 | MTR_3g117750 | 57.895 | 171 | 70 | 2 | 5 | 175 | 13 | 181 | 1.01e-62 | 199 |
MS.gene28568.t1 | MTR_7g110980 | 55.030 | 169 | 68 | 1 | 5 | 173 | 97 | 257 | 2.84e-60 | 195 |
MS.gene28568.t1 | MTR_1g117010 | 56.977 | 172 | 63 | 2 | 5 | 173 | 78 | 241 | 6.74e-60 | 193 |
MS.gene28568.t1 | MTR_1g117010 | 56.977 | 172 | 63 | 2 | 5 | 173 | 78 | 241 | 6.74e-60 | 193 |
MS.gene28568.t1 | MTR_1g085560 | 57.647 | 170 | 63 | 2 | 5 | 173 | 86 | 247 | 5.90e-59 | 191 |
MS.gene28568.t1 | MTR_4g073650 | 56.805 | 169 | 72 | 1 | 5 | 173 | 47 | 214 | 3.02e-58 | 188 |
MS.gene28568.t1 | MTR_8g040180 | 54.651 | 172 | 74 | 2 | 3 | 173 | 17 | 185 | 6.84e-57 | 184 |
MS.gene28568.t1 | MTR_3g070500 | 64.228 | 123 | 43 | 1 | 5 | 127 | 65 | 186 | 9.86e-50 | 165 |
MS.gene28568.t1 | MTR_3g107660 | 47.500 | 200 | 100 | 3 | 3 | 201 | 9 | 204 | 6.61e-46 | 168 |
MS.gene28568.t1 | MTR_1g011980 | 50.292 | 171 | 81 | 3 | 6 | 175 | 9 | 176 | 2.84e-44 | 162 |
MS.gene28568.t1 | MTR_8g036015 | 48.993 | 149 | 63 | 3 | 18 | 165 | 10 | 146 | 1.49e-38 | 135 |
MS.gene28568.t1 | MTR_2g085075 | 50.649 | 154 | 63 | 4 | 18 | 170 | 471 | 612 | 1.36e-36 | 140 |
MS.gene28568.t1 | MTR_3g070500 | 62.000 | 100 | 37 | 1 | 5 | 104 | 65 | 163 | 1.49e-36 | 130 |
MS.gene28568.t1 | MTR_3g070500 | 63.542 | 96 | 34 | 1 | 5 | 100 | 65 | 159 | 1.50e-36 | 130 |
MS.gene28568.t1 | MTR_7g105220 | 44.242 | 165 | 74 | 5 | 4 | 167 | 10 | 157 | 5.64e-34 | 123 |
MS.gene28568.t1 | MTR_5g015500 | 39.594 | 197 | 84 | 6 | 18 | 213 | 314 | 476 | 4.59e-31 | 124 |
MS.gene28568.t1 | MTR_5g015500 | 39.594 | 197 | 84 | 6 | 18 | 213 | 354 | 516 | 7.27e-31 | 123 |
MS.gene28568.t1 | MTR_3g085705 | 52.273 | 88 | 38 | 2 | 64 | 151 | 32 | 115 | 5.30e-21 | 87.8 |
MS.gene28568.t1 | MTR_2g023120 | 45.238 | 126 | 55 | 4 | 18 | 141 | 22 | 135 | 1.38e-20 | 93.2 |
MS.gene28568.t1 | MTR_8g080980 | 35.366 | 164 | 96 | 4 | 203 | 359 | 383 | 543 | 5.01e-17 | 82.8 |
MS.gene28568.t1 | MTR_6g084140 | 36.620 | 142 | 69 | 5 | 18 | 150 | 10 | 139 | 6.51e-17 | 82.4 |
MS.gene28568.t1 | MTR_6g084140 | 36.620 | 142 | 69 | 5 | 18 | 150 | 27 | 156 | 6.70e-17 | 82.4 |
MS.gene28568.t1 | MTR_8g012340 | 34.965 | 143 | 89 | 3 | 219 | 360 | 409 | 548 | 1.58e-16 | 81.3 |
MS.gene28568.t1 | MTR_8g442420 | 35.915 | 142 | 70 | 5 | 18 | 150 | 10 | 139 | 6.15e-16 | 79.3 |
MS.gene28568.t1 | MTR_7g053470 | 33.333 | 174 | 105 | 5 | 194 | 359 | 369 | 539 | 3.18e-15 | 77.0 |
MS.gene28568.t1 | MTR_1g094065 | 33.758 | 157 | 81 | 7 | 17 | 170 | 88 | 224 | 1.95e-13 | 69.3 |
MS.gene28568.t1 | MTR_1g035360 | 31.818 | 154 | 89 | 4 | 17 | 170 | 87 | 224 | 8.10e-12 | 64.7 |
MS.gene28568.t1 | MTR_1g017870 | 32.164 | 171 | 92 | 6 | 203 | 359 | 381 | 541 | 9.86e-12 | 66.6 |
MS.gene28568.t1 | MTR_1g017870 | 32.164 | 171 | 92 | 6 | 203 | 359 | 381 | 541 | 1.17e-11 | 66.2 |
MS.gene28568.t1 | MTR_1g017870 | 32.164 | 171 | 92 | 6 | 203 | 359 | 357 | 517 | 1.70e-11 | 65.9 |
MS.gene28568.t1 | MTR_1g017870 | 31.818 | 176 | 96 | 6 | 198 | 359 | 166 | 331 | 1.75e-11 | 65.1 |
MS.gene28568.t1 | MTR_1g017870 | 31.818 | 176 | 96 | 6 | 198 | 359 | 250 | 415 | 1.93e-11 | 65.5 |
MS.gene28568.t1 | MTR_1g017870 | 31.818 | 176 | 96 | 6 | 198 | 359 | 250 | 415 | 2.10e-11 | 65.5 |
MS.gene28568.t1 | MTR_1g017870 | 31.818 | 176 | 96 | 6 | 198 | 359 | 166 | 331 | 2.27e-11 | 64.7 |
MS.gene28568.t1 | MTR_2g461260 | 25.628 | 199 | 99 | 8 | 16 | 171 | 90 | 282 | 6.99e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28568.t1 | AT2G15790 | 71.111 | 360 | 103 | 1 | 1 | 359 | 1 | 360 | 0.0 | 546 |
MS.gene28568.t1 | AT3G63400 | 66.667 | 174 | 55 | 2 | 3 | 175 | 6 | 177 | 1.67e-74 | 236 |
MS.gene28568.t1 | AT3G63400 | 66.667 | 174 | 55 | 2 | 3 | 175 | 6 | 177 | 1.20e-72 | 236 |
MS.gene28568.t1 | AT3G63400 | 66.667 | 174 | 55 | 2 | 3 | 175 | 6 | 177 | 1.20e-72 | 236 |
MS.gene28568.t1 | AT3G63400 | 66.667 | 174 | 55 | 2 | 3 | 175 | 6 | 177 | 1.20e-72 | 236 |
MS.gene28568.t1 | AT4G34870 | 63.429 | 175 | 60 | 3 | 1 | 174 | 1 | 172 | 9.59e-71 | 219 |
MS.gene28568.t1 | AT2G16600 | 62.428 | 173 | 61 | 3 | 3 | 174 | 4 | 173 | 1.46e-69 | 216 |
MS.gene28568.t1 | AT4G38740 | 61.714 | 175 | 63 | 3 | 1 | 174 | 1 | 172 | 1.55e-69 | 216 |
MS.gene28568.t1 | AT2G21130 | 61.494 | 174 | 63 | 3 | 3 | 175 | 4 | 174 | 3.47e-69 | 215 |
MS.gene28568.t1 | AT3G56070 | 63.218 | 174 | 60 | 3 | 1 | 173 | 1 | 171 | 3.59e-69 | 215 |
MS.gene28568.t1 | AT3G56070 | 63.218 | 174 | 60 | 3 | 1 | 173 | 1 | 171 | 3.59e-69 | 215 |
MS.gene28568.t1 | AT3G55920 | 60.000 | 170 | 66 | 2 | 5 | 174 | 60 | 227 | 4.24e-64 | 204 |
MS.gene28568.t1 | AT2G29960 | 59.763 | 169 | 66 | 2 | 5 | 173 | 33 | 199 | 1.04e-63 | 202 |
MS.gene28568.t1 | AT2G29960 | 59.763 | 169 | 66 | 2 | 5 | 173 | 33 | 199 | 1.04e-63 | 202 |
MS.gene28568.t1 | AT3G62030 | 58.580 | 169 | 62 | 1 | 5 | 173 | 96 | 256 | 4.68e-63 | 202 |
MS.gene28568.t1 | AT3G62030 | 58.580 | 169 | 62 | 1 | 5 | 173 | 95 | 255 | 5.00e-63 | 202 |
MS.gene28568.t1 | AT5G13120 | 56.818 | 176 | 65 | 2 | 5 | 177 | 91 | 258 | 1.26e-62 | 201 |
MS.gene28568.t1 | AT5G13120 | 56.818 | 176 | 65 | 2 | 5 | 177 | 87 | 254 | 1.33e-62 | 201 |
MS.gene28568.t1 | AT3G62030 | 58.580 | 169 | 62 | 1 | 5 | 173 | 149 | 309 | 1.57e-62 | 202 |
MS.gene28568.t1 | AT5G58710 | 58.580 | 169 | 68 | 2 | 5 | 173 | 36 | 202 | 1.63e-60 | 194 |
MS.gene28568.t1 | AT2G29960 | 57.396 | 169 | 60 | 3 | 5 | 173 | 33 | 189 | 3.85e-58 | 187 |
MS.gene28568.t1 | AT2G38730 | 55.814 | 172 | 72 | 2 | 3 | 173 | 31 | 199 | 4.74e-58 | 187 |
MS.gene28568.t1 | AT4G34960 | 53.846 | 169 | 77 | 1 | 5 | 173 | 48 | 215 | 1.33e-56 | 184 |
MS.gene28568.t1 | AT2G16600 | 54.913 | 173 | 52 | 3 | 3 | 174 | 4 | 151 | 6.86e-56 | 180 |
MS.gene28568.t1 | AT4G34960 | 57.377 | 122 | 51 | 1 | 5 | 126 | 48 | 168 | 1.09e-43 | 149 |
MS.gene28568.t1 | AT4G32420 | 47.953 | 171 | 86 | 2 | 3 | 172 | 6 | 174 | 1.71e-42 | 158 |
MS.gene28568.t1 | AT4G32420 | 47.953 | 171 | 86 | 2 | 3 | 172 | 6 | 174 | 1.71e-42 | 158 |
MS.gene28568.t1 | AT4G32420 | 47.953 | 171 | 86 | 2 | 3 | 172 | 6 | 174 | 1.71e-42 | 158 |
MS.gene28568.t1 | AT4G32420 | 47.953 | 171 | 86 | 2 | 3 | 172 | 6 | 174 | 1.71e-42 | 158 |
MS.gene28568.t1 | AT4G32420 | 48.993 | 149 | 76 | 0 | 3 | 151 | 6 | 154 | 1.46e-40 | 152 |
MS.gene28568.t1 | AT3G22920 | 46.154 | 182 | 86 | 6 | 1 | 179 | 1 | 173 | 4.94e-40 | 141 |
MS.gene28568.t1 | AT3G44600 | 50.000 | 154 | 64 | 3 | 18 | 170 | 485 | 626 | 2.26e-37 | 142 |
MS.gene28568.t1 | AT1G01940 | 48.322 | 149 | 64 | 3 | 18 | 165 | 10 | 146 | 2.73e-37 | 132 |
MS.gene28568.t1 | AT2G36130 | 43.030 | 165 | 76 | 5 | 4 | 167 | 10 | 157 | 1.51e-33 | 122 |
MS.gene28568.t1 | AT5G67530 | 43.506 | 154 | 74 | 4 | 18 | 170 | 353 | 494 | 1.89e-31 | 125 |
MS.gene28568.t1 | AT4G33060 | 43.571 | 140 | 64 | 5 | 18 | 155 | 22 | 148 | 2.12e-24 | 104 |
MS.gene28568.t1 | AT3G25230 | 36.207 | 174 | 100 | 5 | 194 | 359 | 375 | 545 | 3.49e-18 | 86.3 |
MS.gene28568.t1 | AT3G25230 | 36.207 | 174 | 100 | 5 | 194 | 359 | 375 | 545 | 4.56e-18 | 85.9 |
MS.gene28568.t1 | AT1G53720 | 33.962 | 159 | 84 | 5 | 18 | 167 | 10 | 156 | 6.38e-18 | 84.3 |
MS.gene28568.t1 | AT1G53720 | 33.962 | 159 | 84 | 5 | 18 | 167 | 10 | 156 | 1.46e-17 | 84.3 |
MS.gene28568.t1 | AT5G48570 | 32.121 | 165 | 102 | 3 | 203 | 360 | 395 | 556 | 1.62e-15 | 78.2 |
MS.gene28568.t1 | AT1G58450 | 35.172 | 145 | 83 | 4 | 219 | 359 | 17 | 154 | 6.25e-13 | 66.6 |
Find 106 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGCAAGGCTTTGCGTTATT+TGG | 0.146656 | 8.4:+27154597 | MS.gene28568:CDS |
CAGAGAAGAGCACTGCTTTA+AGG | 0.171724 | 8.4:+27154772 | MS.gene28568:intron |
CAGGCCTGTAAATTAAAATT+AGG | 0.205661 | 8.4:+27155541 | MS.gene28568:intron |
TCTCTCTGCACCGGCGAAAA+AGG | 0.252295 | 8.4:+27153629 | MS.gene28568:CDS |
GATGGGAAGCATGTGGTGTT+TGG | 0.308347 | 8.4:+27153908 | MS.gene28568:CDS |
TGTATTACTGACCTTCTTCC+TGG | 0.341120 | 8.4:-27157031 | None:intergenic |
AACTGACTCCCATTGGTGTT+TGG | 0.342691 | 8.4:-27153854 | None:intergenic |
CTGTTGAGCTTGGTCCGGTT+GGG | 0.343040 | 8.4:+27153963 | MS.gene28568:CDS |
ATGGGAAGCATGTGGTGTTT+GGG | 0.357969 | 8.4:+27153909 | MS.gene28568:CDS |
CTTTGGAAATGAACACTATA+AGG | 0.386961 | 8.4:+27154168 | MS.gene28568:CDS |
GACGACGAGGACGCCGCATT+TGG | 0.389302 | 8.4:+27153886 | MS.gene28568:CDS |
CAGTGGAGCTTTACTTGATT+CGG | 0.393358 | 8.4:+27155570 | MS.gene28568:CDS |
AATAGTCACCAACCATCATT+TGG | 0.395698 | 8.4:-27156377 | None:intergenic |
TTGCTGAAGGGGAGGATGAA+GGG | 0.404415 | 8.4:+27154035 | MS.gene28568:CDS |
TGAAAGGGATTGGAGTTGTT+AGG | 0.404472 | 8.4:+27153939 | MS.gene28568:CDS |
GGGAAGGTTGTGAAAGGGAT+TGG | 0.404533 | 8.4:+27153929 | MS.gene28568:CDS |
GTTGAATCTATCAAGGGCTT+TGG | 0.411683 | 8.4:+27154151 | MS.gene28568:CDS |
ACCTAAAACACGAACGGAAA+GGG | 0.412914 | 8.4:+27153807 | MS.gene28568:CDS |
CAATGACCTGGATGCCGCTC+TGG | 0.426988 | 8.4:+27156325 | MS.gene28568:CDS |
GCGTTATTTGGACATGTGTT+GGG | 0.434614 | 8.4:+27154609 | MS.gene28568:CDS |
GGAAGATGGATTTCTTGAAA+TGG | 0.436360 | 8.4:-27153679 | None:intergenic |
TGCGTTATTTGGACATGTGT+TGG | 0.447762 | 8.4:+27154608 | MS.gene28568:CDS |
ATCTCCGCCTCCGACGGAAC+CGG | 0.449439 | 8.4:+27153740 | MS.gene28568:CDS |
ATCCACCATTCAAGCTCCTC+CGG | 0.449666 | 8.4:-27154121 | None:intergenic |
ATTGCTGAAGGGGAGGATGA+AGG | 0.452826 | 8.4:+27154034 | MS.gene28568:CDS |
TCTGTTGAGCTTGGTCCGGT+TGG | 0.454918 | 8.4:+27153962 | MS.gene28568:CDS |
ATGTTGTGATTGCTGATTGT+GGG | 0.460587 | 8.4:+27154008 | MS.gene28568:CDS |
GGCTTGGTATCAAGATCAAC+AGG | 0.465685 | 8.4:-27154100 | None:intergenic |
GGTAGATCGTTCTCCCCAAC+CGG | 0.469866 | 8.4:-27153977 | None:intergenic |
ACGAGGACGCCGCATTTGGA+TGG | 0.473500 | 8.4:+27153890 | MS.gene28568:CDS |
TTTGGACATGTGTTGGGAGA+AGG | 0.474985 | 8.4:+27154615 | MS.gene28568:CDS |
AGCTCTGTTTCGCAAAGGCC+AGG | 0.476684 | 8.4:+27155624 | MS.gene28568:CDS |
TGTTGAGCTTGGTCCGGTTG+GGG | 0.477465 | 8.4:+27153964 | MS.gene28568:CDS |
GTTGTTAGGTCTGTTGAGCT+TGG | 0.477926 | 8.4:+27153953 | MS.gene28568:CDS |
GAATGCTGTTGAATCTATCA+AGG | 0.478392 | 8.4:+27154144 | MS.gene28568:CDS |
TCGAAGTACACTCTTGGGTT+CGG | 0.485037 | 8.4:-27153521 | None:intergenic |
CTTATGTCGAAGTACACTCT+TGG | 0.486685 | 8.4:-27153527 | None:intergenic |
CCAAGCCGGAGGAGCTTGAA+TGG | 0.487486 | 8.4:+27154116 | MS.gene28568:CDS |
GGTTGCTGATAGACATGATA+AGG | 0.494242 | 8.4:+27157137 | MS.gene28568:intron |
TTTGACGACACGGTGGAAGA+TGG | 0.495856 | 8.4:-27153693 | None:intergenic |
AGCTATCCAGAGCGGCATCC+AGG | 0.495882 | 8.4:-27156331 | None:intergenic |
TGCTGAAGGGGAGGATGAAG+GGG | 0.498218 | 8.4:+27154036 | MS.gene28568:CDS |
TGACTCGCCGCCGGTTCCGT+CGG | 0.502311 | 8.4:-27153750 | None:intergenic |
TTATGTCGAAGTACACTCTT+GGG | 0.506372 | 8.4:-27153526 | None:intergenic |
CCATTCAAGCTCCTCCGGCT+TGG | 0.508001 | 8.4:-27154116 | None:intergenic |
TTTCGCCGGTGCAGAGAGAT+CGG | 0.511855 | 8.4:-27153625 | None:intergenic |
GCCGCCGGTTCCGTCGGAGG+CGG | 0.516656 | 8.4:-27153744 | None:intergenic |
AGGCGGAGATGTCACCGCCT+TGG | 0.518147 | 8.4:-27153727 | None:intergenic |
ATCTTCCACCGTGTCGTCAA+AGG | 0.519364 | 8.4:+27153695 | MS.gene28568:CDS |
ATACCGGTCCAAACACCAAT+GGG | 0.522499 | 8.4:+27153846 | MS.gene28568:CDS |
TTAGAGTTGGAGCCAAATGA+TGG | 0.524064 | 8.4:+27156365 | MS.gene28568:CDS |
CTTCAAGAGAGCATTAGAGT+TGG | 0.526509 | 8.4:+27156352 | MS.gene28568:CDS |
AAGCATCGGCGGTGAACTCG+AGG | 0.527582 | 8.4:+27153547 | MS.gene28568:CDS |
GTGTTTGGGAAGGTTGTGAA+AGG | 0.528665 | 8.4:+27153923 | MS.gene28568:CDS |
TAGGTCTGTTGAGCTTGGTC+CGG | 0.531881 | 8.4:+27153958 | MS.gene28568:CDS |
ACTCCCATTGGTGTTTGGAC+CGG | 0.534347 | 8.4:-27153849 | None:intergenic |
TTGTGGGGAGATTGCTGAAG+GGG | 0.543269 | 8.4:+27154024 | MS.gene28568:CDS |
GGAGAACGATCTACCGGAGC+AGG | 0.545330 | 8.4:+27153985 | MS.gene28568:CDS |
GATGTTGTGATTGCTGATTG+TGG | 0.548690 | 8.4:+27154007 | MS.gene28568:CDS |
CTCGCCGCCGGTTCCGTCGG+AGG | 0.551251 | 8.4:-27153747 | None:intergenic |
ACAGAAGCAAGATTATAAGA+TGG | 0.553869 | 8.4:+27154561 | MS.gene28568:intron |
ACCGTAGATTGACTCGCCGC+CGG | 0.554056 | 8.4:-27153759 | None:intergenic |
TGGGGAGATTGCTGAAGGGG+AGG | 0.554625 | 8.4:+27154027 | MS.gene28568:CDS |
TGTTTGGGAAGGTTGTGAAA+GGG | 0.554643 | 8.4:+27153924 | MS.gene28568:CDS |
CTTGAAATGGAGAGGGACGT+TGG | 0.557692 | 8.4:-27153666 | None:intergenic |
GACCTAAAACACGAACGGAA+AGG | 0.557928 | 8.4:+27153806 | MS.gene28568:CDS |
GCAATCACAACATCCTGCTC+CGG | 0.561181 | 8.4:-27153998 | None:intergenic |
GTACGCAATTGCCAGGAAGA+AGG | 0.562491 | 8.4:+27157020 | MS.gene28568:CDS |
CGAGGACGCCGCATTTGGAT+GGG | 0.564333 | 8.4:+27153891 | MS.gene28568:CDS |
GTTTGGACCGGTATTCGCCA+TGG | 0.566119 | 8.4:-27153837 | None:intergenic |
ACCGGCGGCGAGTCAATCTA+CGG | 0.568908 | 8.4:+27153758 | MS.gene28568:CDS |
GAAGCATGTGGTGTTTGGGA+AGG | 0.570028 | 8.4:+27153913 | MS.gene28568:CDS |
ATGGATTTCTTGAAATGGAG+AGG | 0.571440 | 8.4:-27153674 | None:intergenic |
GTCAAAGGCTTCATGATCCA+AGG | 0.574138 | 8.4:+27153710 | MS.gene28568:CDS |
TGTGATACTTACTGAACTGT+TGG | 0.576217 | 8.4:-27154817 | None:intergenic |
TGGATTTCTTGAAATGGAGA+GGG | 0.579737 | 8.4:-27153673 | None:intergenic |
TCCGCCTCCGACGGAACCGG+CGG | 0.580073 | 8.4:+27153743 | MS.gene28568:CDS |
GGTGACATCTCCGCCTCCGA+CGG | 0.583678 | 8.4:+27153734 | MS.gene28568:CDS |
GATTGTGGGGAGATTGCTGA+AGG | 0.584654 | 8.4:+27154022 | MS.gene28568:CDS |
GACATGTGTTGGGAGAAGGA+TGG | 0.614412 | 8.4:+27154619 | MS.gene28568:CDS |
GGTTGGGGAGAACGATCTAC+CGG | 0.615288 | 8.4:+27153979 | MS.gene28568:CDS |
AGCATCGGCGGTGAACTCGA+GGG | 0.617751 | 8.4:+27153548 | MS.gene28568:CDS |
TCATGAAGCCTTTGACGACA+CGG | 0.625678 | 8.4:-27153703 | None:intergenic |
TGTTGATCTTGATACCAAGC+CGG | 0.625762 | 8.4:+27154102 | MS.gene28568:CDS |
AATACCGGTCCAAACACCAA+TGG | 0.627525 | 8.4:+27153845 | MS.gene28568:CDS |
TGTTGTGATTGCTGATTGTG+GGG | 0.627931 | 8.4:+27154009 | MS.gene28568:CDS |
AGCCGGAGGAGCTTGAATGG+TGG | 0.631915 | 8.4:+27154119 | MS.gene28568:CDS |
AATTTCCGATCTCTCTGCAC+CGG | 0.632806 | 8.4:+27153620 | MS.gene28568:CDS |
ATTTCGACCTAAAACACGAA+CGG | 0.634503 | 8.4:+27153801 | MS.gene28568:CDS |
TCGGACTTTGCAATGCACGA+TGG | 0.636187 | 8.4:+27155589 | MS.gene28568:CDS |
AATGCTGTTGAATCTATCAA+GGG | 0.636468 | 8.4:+27154145 | MS.gene28568:CDS |
ATTGTGGGGAGATTGCTGAA+GGG | 0.637501 | 8.4:+27154023 | MS.gene28568:CDS |
TGGAGAGGGACGTTGGTGTG+TGG | 0.640483 | 8.4:-27153659 | None:intergenic |
GTATATGTTACTCAATGACC+TGG | 0.641203 | 8.4:+27156313 | MS.gene28568:CDS |
GTGTACTTCGACATAAGCAT+CGG | 0.649168 | 8.4:+27153533 | MS.gene28568:CDS |
GCTAAAGCTCTGTTTCGCAA+AGG | 0.651141 | 8.4:+27155619 | MS.gene28568:CDS |
GAGAAGGATGGTGTTGACCA+AGG | 0.659869 | 8.4:+27154631 | MS.gene28568:CDS |
ACATGCTTCCCATCCAAATG+CGG | 0.664004 | 8.4:-27153899 | None:intergenic |
TACTTCGACATAAGCATCGG+CGG | 0.673491 | 8.4:+27153536 | MS.gene28568:CDS |
TGATCTTGATACCAAGCCGG+AGG | 0.689161 | 8.4:+27154105 | MS.gene28568:CDS |
TTAAAATTAGGTGACCTCAG+TGG | 0.703190 | 8.4:+27155553 | MS.gene28568:CDS |
GCATTTGGATGGGAAGCATG+TGG | 0.713375 | 8.4:+27153901 | MS.gene28568:CDS |
TGAAGCCTTTGACGACACGG+TGG | 0.743535 | 8.4:-27153700 | None:intergenic |
TCTCTTGAAGCTATCCAGAG+CGG | 0.756413 | 8.4:-27156339 | None:intergenic |
AAAGGCTTCATGATCCAAGG+CGG | 0.764461 | 8.4:+27153713 | MS.gene28568:CDS |
AATCAAGTAAAGCTCCACTG+AGG | 0.768633 | 8.4:-27155567 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTACTATATATAATACA+TGG | - | chr8.4:27156260-27156279 | None:intergenic | 10.0% |
!!! | TTAATGTTTTAGTTTTATTT+GGG | + | chr8.4:27154467-27154486 | MS.gene28568:intron | 10.0% |
!!! | CTTAATGTTTTAGTTTTATT+TGG | + | chr8.4:27154466-27154485 | MS.gene28568:intron | 15.0% |
!!! | GTTATTAACTTTTTTAAAGA+TGG | + | chr8.4:27154058-27154077 | MS.gene28568:CDS | 15.0% |
!!! | TAAATGTGAATTAAATTTTC+AGG | + | chr8.4:27155522-27155541 | MS.gene28568:intron | 15.0% |
!!! | TTTTAAATCGAAATAGAATA+GGG | + | chr8.4:27154236-27154255 | MS.gene28568:intron | 15.0% |
!!! | TTTTTAAATCGAAATAGAAT+AGG | + | chr8.4:27154235-27154254 | MS.gene28568:intron | 15.0% |
!! | AAATTGACAAAAAGTTTAAG+GGG | + | chr8.4:27155931-27155950 | MS.gene28568:intron | 20.0% |
!! | AAGTATTTGTAAAGAAAACA+TGG | - | chr8.4:27155288-27155307 | None:intergenic | 20.0% |
!! | AATTACTTTCTTATAACACT+GGG | + | chr8.4:27156475-27156494 | MS.gene28568:intron | 20.0% |
!! | ACAAATTGACAAAAAGTTTA+AGG | + | chr8.4:27155929-27155948 | MS.gene28568:intron | 20.0% |
!! | AGTATTTGTAAAGAAAACAT+GGG | - | chr8.4:27155287-27155306 | None:intergenic | 20.0% |
!! | ATTAAAGACAAAACAATGAA+AGG | - | chr8.4:27156688-27156707 | None:intergenic | 20.0% |
!! | CAAATTGACAAAAAGTTTAA+GGG | + | chr8.4:27155930-27155949 | MS.gene28568:intron | 20.0% |
!! | TAAAGTAGCAAATTACAATT+CGG | - | chr8.4:27156024-27156043 | None:intergenic | 20.0% |
!! | TTAAAGACAAAACAATGAAA+GGG | - | chr8.4:27156687-27156706 | None:intergenic | 20.0% |
!! | TTATAAGTAAAAGTAAGTAG+CGG | - | chr8.4:27154390-27154409 | None:intergenic | 20.0% |
!!! | CAAAGTTAATTTGATATTTC+TGG | + | chr8.4:27156947-27156966 | MS.gene28568:intron | 20.0% |
!!! | GTAATTTGCTATTTGTTTTT+TGG | + | chr8.4:27156273-27156292 | MS.gene28568:intron | 20.0% |
!!! | TCATGTTTTGTAAATTTAGT+TGG | + | chr8.4:27155185-27155204 | MS.gene28568:intron | 20.0% |
! | AATATTCGAAAACAACAATG+AGG | - | chr8.4:27154311-27154330 | None:intergenic | 25.0% |
! | ACTAAAACATTAAGCTTACA+TGG | - | chr8.4:27154460-27154479 | None:intergenic | 25.0% |
! | AGCAATCAATTATTGAAAGT+CGG | - | chr8.4:27155038-27155057 | None:intergenic | 25.0% |
! | AGTCAAAACCATCAAATTTA+TGG | + | chr8.4:27156077-27156096 | MS.gene28568:intron | 25.0% |
! | ATAGATGACATTGTTAAACA+CGG | - | chr8.4:27155698-27155717 | None:intergenic | 25.0% |
! | ATTACTTTCTTATAACACTG+GGG | + | chr8.4:27156476-27156495 | MS.gene28568:intron | 25.0% |
! | ATTCTTTATGATTACCTTTG+TGG | + | chr8.4:27154512-27154531 | MS.gene28568:intron | 25.0% |
! | CAAATAAAAGATACACACTA+GGG | - | chr8.4:27154338-27154357 | None:intergenic | 25.0% |
! | CAATTACTTTCTTATAACAC+TGG | + | chr8.4:27156474-27156493 | MS.gene28568:intron | 25.0% |
! | CTATATATAATACATGGCTA+TGG | - | chr8.4:27156254-27156273 | None:intergenic | 25.0% |
! | GTCAAAACCATCAAATTTAT+GGG | + | chr8.4:27156078-27156097 | MS.gene28568:intron | 25.0% |
! | TACAAATACTTACTCTCTTA+GGG | + | chr8.4:27155297-27155316 | MS.gene28568:intron | 25.0% |
! | TAGTAAAATAGTCATTCACA+AGG | - | chr8.4:27155258-27155277 | None:intergenic | 25.0% |
! | TTAACAAGTCAAAGTGTAAA+TGG | + | chr8.4:27156808-27156827 | MS.gene28568:intron | 25.0% |
! | TTAAGTGAACTTATTGAAGA+AGG | - | chr8.4:27155500-27155519 | None:intergenic | 25.0% |
! | TTACAAATACTTACTCTCTT+AGG | + | chr8.4:27155296-27155315 | MS.gene28568:intron | 25.0% |
! | TTCATGTAGAAACATATCTT+TGG | + | chr8.4:27156569-27156588 | MS.gene28568:intron | 25.0% |
! | TTGATGCATATCTTTGTTAA+AGG | + | chr8.4:27154279-27154298 | MS.gene28568:intron | 25.0% |
!! | AAAATCATGAGAAGAGTTTT+AGG | - | chr8.4:27154986-27155005 | None:intergenic | 25.0% |
!! | AAATTTTCGTCTTCGAAATT+TGG | - | chr8.4:27153785-27153804 | None:intergenic | 25.0% |
!! | CATTATACTCTTTGCATTTT+AGG | + | chr8.4:27154212-27154231 | MS.gene28568:intron | 25.0% |
!! | TAAGGTGAATTTTTGTTCTT+TGG | + | chr8.4:27154186-27154205 | MS.gene28568:intron | 25.0% |
!! | TTTATTCTGTTTACTGCTTT+TGG | + | chr8.4:27157109-27157128 | MS.gene28568:intron | 25.0% |
!!! | AAGACTTTAGTTTTGGAAAT+TGG | + | chr8.4:27155102-27155121 | MS.gene28568:intron | 25.0% |
!!! | AATTTGATGGTTTTGACTTT+TGG | - | chr8.4:27156075-27156094 | None:intergenic | 25.0% |
!!! | AGACTTTAGTTTTGGAAATT+GGG | + | chr8.4:27155103-27155122 | MS.gene28568:intron | 25.0% |
!!! | AGTTTTATTTGGGAATATAG+TGG | + | chr8.4:27154477-27154496 | MS.gene28568:intron | 25.0% |
!!! | GTCACCTAATTTTAATTTAC+AGG | - | chr8.4:27155548-27155567 | None:intergenic | 25.0% |
AATGCTGTTGAATCTATCAA+GGG | + | chr8.4:27154145-27154164 | MS.gene28568:CDS | 30.0% | |
AATTGTTTAATAGGGAGGAA+AGG | + | chr8.4:27155869-27155888 | MS.gene28568:intron | 30.0% | |
AATTTGTACCAAGATGGATA+GGG | - | chr8.4:27155916-27155935 | None:intergenic | 30.0% | |
ACAGAAGCAAGATTATAAGA+TGG | + | chr8.4:27154561-27154580 | MS.gene28568:intron | 30.0% | |
AGAATGTGACACATTATAAC+AGG | - | chr8.4:27155465-27155484 | None:intergenic | 30.0% | |
AGAGTTTCAATAGAGAAAGT+AGG | + | chr8.4:27155662-27155681 | MS.gene28568:intron | 30.0% | |
ATAACTATAACCAGTCATAG+GGG | + | chr8.4:27156198-27156217 | MS.gene28568:intron | 30.0% | |
ATTGAGATCCAAAACATCTT+TGG | + | chr8.4:27156887-27156906 | MS.gene28568:intron | 30.0% | |
ATTGTTTAATAGGGAGGAAA+GGG | + | chr8.4:27155870-27155889 | MS.gene28568:intron | 30.0% | |
ATTTCATGCTGAATTGATTG+TGG | - | chr8.4:27156774-27156793 | None:intergenic | 30.0% | |
CAGGCCTGTAAATTAAAATT+AGG | + | chr8.4:27155541-27155560 | MS.gene28568:intron | 30.0% | |
CATGTATGTTTCATACACAA+AGG | - | chr8.4:27156862-27156881 | None:intergenic | 30.0% | |
CCAAATAAAAGATACACACT+AGG | - | chr8.4:27154339-27154358 | None:intergenic | 30.0% | |
CTGGTGTGAATTGTTTAATA+GGG | + | chr8.4:27155861-27155880 | MS.gene28568:intron | 30.0% | |
GAAATGGTAAAGGAAGAAAA+AGG | - | chr8.4:27157057-27157076 | None:intergenic | 30.0% | |
GAAGGAGTCTATTCATAATA+AGG | + | chr8.4:27156604-27156623 | MS.gene28568:intron | 30.0% | |
GATAACTATAACCAGTCATA+GGG | + | chr8.4:27156197-27156216 | MS.gene28568:intron | 30.0% | |
GTCAAAGTGTAAATGGAATT+AGG | + | chr8.4:27156815-27156834 | MS.gene28568:intron | 30.0% | |
TAAAATAGTCATTCACAAGG+TGG | - | chr8.4:27155255-27155274 | None:intergenic | 30.0% | |
TGATAACTATAACCAGTCAT+AGG | + | chr8.4:27156196-27156215 | MS.gene28568:intron | 30.0% | |
TTACAATTCGGTACTTAAGA+AGG | - | chr8.4:27156012-27156031 | None:intergenic | 30.0% | |
TTCCAAAACTAAAGTCTTGA+AGG | - | chr8.4:27155100-27155119 | None:intergenic | 30.0% | |
TTCTTTAGTATCTCATCTCA+TGG | + | chr8.4:27154731-27154750 | MS.gene28568:intron | 30.0% | |
TTTATTTCATTCATTGCCTG+TGG | + | chr8.4:27156415-27156434 | MS.gene28568:intron | 30.0% | |
TTTGTCAATTTGTACCAAGA+TGG | - | chr8.4:27155922-27155941 | None:intergenic | 30.0% | |
! | AATAAAAAACTGACTCCCAT+TGG | - | chr8.4:27153864-27153883 | None:intergenic | 30.0% |
! | CATAGAACTTTTATGCTACT+AGG | + | chr8.4:27155796-27155815 | MS.gene28568:intron | 30.0% |
! | CCTAGTGTGTATCTTTTATT+TGG | + | chr8.4:27154336-27154355 | MS.gene28568:intron | 30.0% |
! | CTTTGGAAATGAACACTATA+AGG | + | chr8.4:27154168-27154187 | MS.gene28568:CDS | 30.0% |
! | GTCATAATCCAAAGATGTTT+TGG | - | chr8.4:27156898-27156917 | None:intergenic | 30.0% |
! | GTCATCATTTTATGTGACTA+GGG | + | chr8.4:27154842-27154861 | MS.gene28568:intron | 30.0% |
! | TGTCATCATTTTATGTGACT+AGG | + | chr8.4:27154841-27154860 | MS.gene28568:intron | 30.0% |
!! | TTTTTGGTCTGCTTAATTTC+AGG | + | chr8.4:27156289-27156308 | MS.gene28568:intron | 30.0% |
AACCAATCATGTGTGCAATT+TGG | - | chr8.4:27155166-27155185 | None:intergenic | 35.0% | |
AACTACACAACTAAAGCTTG+TGG | - | chr8.4:27154940-27154959 | None:intergenic | 35.0% | |
AATAGTCACCAACCATCATT+TGG | - | chr8.4:27156380-27156399 | None:intergenic | 35.0% | |
ACAAAAAGTTTAAGGGGAAG+GGG | + | chr8.4:27155937-27155956 | MS.gene28568:intron | 35.0% | |
ACAAAACAATGAAAGGGAGA+GGG | - | chr8.4:27156681-27156700 | None:intergenic | 35.0% | |
ACCAATCATGTGTGCAATTT+GGG | - | chr8.4:27155165-27155184 | None:intergenic | 35.0% | |
ATCAATTATTGAAAGTCGGC+TGG | - | chr8.4:27155034-27155053 | None:intergenic | 35.0% | |
ATGGATTTCTTGAAATGGAG+AGG | - | chr8.4:27153677-27153696 | None:intergenic | 35.0% | |
ATTGTGGAAATGATGTGACT+TGG | - | chr8.4:27156758-27156777 | None:intergenic | 35.0% | |
ATTTCGACCTAAAACACGAA+CGG | + | chr8.4:27153801-27153820 | MS.gene28568:CDS | 35.0% | |
CAATTTGTACCAAGATGGAT+AGG | - | chr8.4:27155917-27155936 | None:intergenic | 35.0% | |
CAGAGTTCCCATAAATTTGA+TGG | - | chr8.4:27156088-27156107 | None:intergenic | 35.0% | |
CATACAGTCATATTGTATGC+TGG | + | chr8.4:27155842-27155861 | MS.gene28568:intron | 35.0% | |
GAACAAGACAGCATTTGAAA+TGG | - | chr8.4:27157073-27157092 | None:intergenic | 35.0% | |
GAATGCTGTTGAATCTATCA+AGG | + | chr8.4:27154144-27154163 | MS.gene28568:CDS | 35.0% | |
GACAAAAAGTTTAAGGGGAA+GGG | + | chr8.4:27155936-27155955 | MS.gene28568:intron | 35.0% | |
GCATACAATATGACTGTATG+AGG | - | chr8.4:27155842-27155861 | None:intergenic | 35.0% | |
GCTGGTGTGAATTGTTTAAT+AGG | + | chr8.4:27155860-27155879 | MS.gene28568:intron | 35.0% | |
GGTTATAGTTATCAATTCCC+TGG | - | chr8.4:27156190-27156209 | None:intergenic | 35.0% | |
GTATATGTTACTCAATGACC+TGG | + | chr8.4:27156313-27156332 | MS.gene28568:CDS | 35.0% | |
GTGTGAATTGTTTAATAGGG+AGG | + | chr8.4:27155864-27155883 | MS.gene28568:intron | 35.0% | |
TGACAAAAAGTTTAAGGGGA+AGG | + | chr8.4:27155935-27155954 | MS.gene28568:intron | 35.0% | |
TGGATTTCTTGAAATGGAGA+GGG | - | chr8.4:27153676-27153695 | None:intergenic | 35.0% | |
TGTAGTTAGAGGCTTAAGAA+TGG | + | chr8.4:27154953-27154972 | MS.gene28568:intron | 35.0% | |
TGTGATACTTACTGAACTGT+TGG | - | chr8.4:27154820-27154839 | None:intergenic | 35.0% | |
TTAAAATTAGGTGACCTCAG+TGG | + | chr8.4:27155553-27155572 | MS.gene28568:CDS | 35.0% | |
TTATGTCGAAGTACACTCTT+GGG | - | chr8.4:27153529-27153548 | None:intergenic | 35.0% | |
TTCTGTAAGAAAAAGGGGAA+GGG | - | chr8.4:27156159-27156178 | None:intergenic | 35.0% | |
TTGAGTGTAATGAACTTCCT+GGG | + | chr8.4:27156517-27156536 | MS.gene28568:intron | 35.0% | |
TTTGAGTGTAATGAACTTCC+TGG | + | chr8.4:27156516-27156535 | MS.gene28568:intron | 35.0% | |
! | AAACATATCTTTGGCTTACC+AGG | + | chr8.4:27156578-27156597 | MS.gene28568:intron | 35.0% |
! | AACATATCTTTGGCTTACCA+GGG | + | chr8.4:27156579-27156598 | MS.gene28568:intron | 35.0% |
! | ACTATTTCTTGTCTCGACAT+TGG | - | chr8.4:27156631-27156650 | None:intergenic | 35.0% |
! | AGCTTTAGTTGTGTAGTTAG+AGG | + | chr8.4:27154942-27154961 | MS.gene28568:intron | 35.0% |
! | ATGGTGATACTTTTGCTGAT+TGG | + | chr8.4:27154077-27154096 | MS.gene28568:CDS | 35.0% |
! | ATGTTGTGATTGCTGATTGT+GGG | + | chr8.4:27154008-27154027 | MS.gene28568:CDS | 35.0% |
! | ATTTTATCCATGGCGAATAC+CGG | + | chr8.4:27153830-27153849 | MS.gene28568:CDS | 35.0% |
! | CTATTTCTTGTCTCGACATT+GGG | - | chr8.4:27156630-27156649 | None:intergenic | 35.0% |
! | GACAGCATTTGAAATGGTAA+AGG | - | chr8.4:27157067-27157086 | None:intergenic | 35.0% |
! | GGAAGATGGATTTCTTGAAA+TGG | - | chr8.4:27153682-27153701 | None:intergenic | 35.0% |
!! | TGAAAAGCATTTATGACCAC+AGG | - | chr8.4:27156434-27156453 | None:intergenic | 35.0% |
!! | TGCCTTCAAGACTTTAGTTT+TGG | + | chr8.4:27155095-27155114 | MS.gene28568:intron | 35.0% |
!! | TGTTTACTGCTTTTGGTTAC+AGG | + | chr8.4:27157116-27157135 | MS.gene28568:intron | 35.0% |
!!! | AGTTTTTTATTACGACGACG+AGG | + | chr8.4:27153873-27153892 | MS.gene28568:CDS | 35.0% |
!!! | TTGATGGTTTTGACTTTTGG+AGG | - | chr8.4:27156072-27156091 | None:intergenic | 35.0% |
AAGCAGACCTACTCAGAAAT+GGG | - | chr8.4:27155390-27155409 | None:intergenic | 40.0% | |
AATCAAGTAAAGCTCCACTG+AGG | - | chr8.4:27155570-27155589 | None:intergenic | 40.0% | |
AATGCATCAGCATACCACAA+AGG | - | chr8.4:27154529-27154548 | None:intergenic | 40.0% | |
ACCCAAATTGCACACATGAT+TGG | + | chr8.4:27155161-27155180 | MS.gene28568:intron | 40.0% | |
ACCTAAAACACGAACGGAAA+GGG | + | chr8.4:27153807-27153826 | MS.gene28568:CDS | 40.0% | |
AGACTAACTAAAACCGACCT+TGG | - | chr8.4:27154651-27154670 | None:intergenic | 40.0% | |
AGGAAAGGGTAAGGAAAAGA+AGG | + | chr8.4:27155884-27155903 | MS.gene28568:intron | 40.0% | |
AGTTATCAATTCCCTGGTCT+GGG | - | chr8.4:27156184-27156203 | None:intergenic | 40.0% | |
ATAGTCATTCACAAGGTGGT+AGG | - | chr8.4:27155251-27155270 | None:intergenic | 40.0% | |
CAGTGGAGCTTTACTTGATT+CGG | + | chr8.4:27155570-27155589 | MS.gene28568:CDS | 40.0% | |
CATGATATATCCCCTATGAC+TGG | - | chr8.4:27156211-27156230 | None:intergenic | 40.0% | |
CGTTTGTAAATCGTCCTGTT+CGG | + | chr8.4:27156719-27156738 | MS.gene28568:intron | 40.0% | |
CTTATGTCGAAGTACACTCT+TGG | - | chr8.4:27153530-27153549 | None:intergenic | 40.0% | |
GACAAAACAATGAAAGGGAG+AGG | - | chr8.4:27156682-27156701 | None:intergenic | 40.0% | |
GACTTGTCTCGTCAACTATT+AGG | + | chr8.4:27154873-27154892 | MS.gene28568:intron | 40.0% | |
GCGTTATTTGGACATGTGTT+GGG | + | chr8.4:27154609-27154628 | MS.gene28568:CDS | 40.0% | |
GGAAAGGGTAAGGAAAAGAA+GGG | + | chr8.4:27155885-27155904 | MS.gene28568:intron | 40.0% | |
GGGTTCTTGATAAAGCTGTA+AGG | + | chr8.4:27156537-27156556 | MS.gene28568:intron | 40.0% | |
GGTTGCTGATAGACATGATA+AGG | + | chr8.4:27157137-27157156 | MS.gene28568:intron | 40.0% | |
GTGTACTTCGACATAAGCAT+CGG | + | chr8.4:27153533-27153552 | MS.gene28568:CDS | 40.0% | |
GTTCTGTAAGAAAAAGGGGA+AGG | - | chr8.4:27156160-27156179 | None:intergenic | 40.0% | |
GTTGAATCTATCAAGGGCTT+TGG | + | chr8.4:27154151-27154170 | MS.gene28568:CDS | 40.0% | |
GTTTGTAAATCGTCCTGTTC+GGG | + | chr8.4:27156720-27156739 | MS.gene28568:intron | 40.0% | |
TAAGAAAAAGGGGAAGGGAA+TGG | - | chr8.4:27156154-27156173 | None:intergenic | 40.0% | |
TAGGTCTGCATGATTCAACA+TGG | + | chr8.4:27155418-27155437 | MS.gene28568:intron | 40.0% | |
TAGGTCTGCTTCATTCAACT+AGG | + | chr8.4:27155399-27155418 | MS.gene28568:intron | 40.0% | |
TAGTTATCAATTCCCTGGTC+TGG | - | chr8.4:27156185-27156204 | None:intergenic | 40.0% | |
TCTATTGAAAGATGCCAACC+TGG | - | chr8.4:27155645-27155664 | None:intergenic | 40.0% | |
TGAAAGGGATTGGAGTTGTT+AGG | + | chr8.4:27153939-27153958 | MS.gene28568:CDS | 40.0% | |
TGCGTTATTTGGACATGTGT+TGG | + | chr8.4:27154608-27154627 | MS.gene28568:CDS | 40.0% | |
TGGGGGTTCTGTAAGAAAAA+GGG | - | chr8.4:27156165-27156184 | None:intergenic | 40.0% | |
TGTATTACTGACCTTCTTCC+TGG | - | chr8.4:27157034-27157053 | None:intergenic | 40.0% | |
TGTTGATCTTGATACCAAGC+CGG | + | chr8.4:27154102-27154121 | MS.gene28568:CDS | 40.0% | |
TGTTTGGGAAGGTTGTGAAA+GGG | + | chr8.4:27153924-27153943 | MS.gene28568:CDS | 40.0% | |
TTAATAGGGAGGAAAGGGTA+AGG | + | chr8.4:27155875-27155894 | MS.gene28568:intron | 40.0% | |
TTAGAGTTGGAGCCAAATGA+TGG | + | chr8.4:27156365-27156384 | MS.gene28568:CDS | 40.0% | |
! | AAAAAGAGTACGCAATTGCC+AGG | + | chr8.4:27157013-27157032 | MS.gene28568:CDS | 40.0% |
! | ACGGAAAGGGATTTTATCCA+TGG | + | chr8.4:27153820-27153839 | MS.gene28568:CDS | 40.0% |
! | GATGTTGTGATTGCTGATTG+TGG | + | chr8.4:27154007-27154026 | MS.gene28568:CDS | 40.0% |
! | GCAGAGAGATCGGAAATTTT+CGG | - | chr8.4:27153618-27153637 | None:intergenic | 40.0% |
! | TACAGCTTTATCAAGAACCC+AGG | - | chr8.4:27156537-27156556 | None:intergenic | 40.0% |
! | TGTTGTGATTGCTGATTGTG+GGG | + | chr8.4:27154009-27154028 | MS.gene28568:CDS | 40.0% |
!! | CTTCAAGAGAGCATTAGAGT+TGG | + | chr8.4:27156352-27156371 | MS.gene28568:CDS | 40.0% |
!! | GGCTATCAAAAAGTATCGCA+AGG | + | chr8.4:27154582-27154601 | MS.gene28568:CDS | 40.0% |
!! | GTTCTGTGCTGTTCTGTTTT+TGG | + | chr8.4:27154680-27154699 | MS.gene28568:intron | 40.0% |
!!! | GGGAATATAGTGGCTAGTTT+TGG | + | chr8.4:27154487-27154506 | MS.gene28568:intron | 40.0% |
!!! | TCTGTTTTTGGTTGTTTCCG+TGG | + | chr8.4:27154692-27154711 | MS.gene28568:intron | 40.0% |
AAAGGCTTCATGATCCAAGG+CGG | + | chr8.4:27153713-27153732 | MS.gene28568:CDS | 45.0% | |
AATACCGGTCCAAACACCAA+TGG | + | chr8.4:27153845-27153864 | MS.gene28568:CDS | 45.0% | |
AATTTCCGATCTCTCTGCAC+CGG | + | chr8.4:27153620-27153639 | MS.gene28568:CDS | 45.0% | |
ACATGCTTCCCATCCAAATG+CGG | - | chr8.4:27153902-27153921 | None:intergenic | 45.0% | |
AGCAAAGCAGTAACTAGCCA+CGG | - | chr8.4:27154712-27154731 | None:intergenic | 45.0% | |
AGTTGGAGCCAAATGATGGT+TGG | + | chr8.4:27156369-27156388 | MS.gene28568:intron | 45.0% | |
ATACCGGTCCAAACACCAAT+GGG | + | chr8.4:27153846-27153865 | MS.gene28568:CDS | 45.0% | |
ATTGTGGGGAGATTGCTGAA+GGG | + | chr8.4:27154023-27154042 | MS.gene28568:CDS | 45.0% | |
CATACCTTGCTCTGTTCTTC+AGG | + | chr8.4:27156982-27157001 | MS.gene28568:intron | 45.0% | |
CTCTTAGGGCCAAACTAACA+AGG | + | chr8.4:27155311-27155330 | MS.gene28568:intron | 45.0% | |
CTGGGGGTTCTGTAAGAAAA+AGG | - | chr8.4:27156166-27156185 | None:intergenic | 45.0% | |
GAAGCAGACCTACTCAGAAA+TGG | - | chr8.4:27155391-27155410 | None:intergenic | 45.0% | |
GACCTAAAACACGAACGGAA+AGG | + | chr8.4:27153806-27153825 | MS.gene28568:CDS | 45.0% | |
GCTAAAGCTCTGTTTCGCAA+AGG | + | chr8.4:27155619-27155638 | MS.gene28568:CDS | 45.0% | |
GGGGGTTCTGTAAGAAAAAG+GGG | - | chr8.4:27156164-27156183 | None:intergenic | 45.0% | |
GGGTAAAACCCTATCCATCT+TGG | + | chr8.4:27155905-27155924 | MS.gene28568:intron | 45.0% | |
GTCAAAGGCTTCATGATCCA+AGG | + | chr8.4:27153710-27153729 | MS.gene28568:CDS | 45.0% | |
GTGTTTGGGAAGGTTGTGAA+AGG | + | chr8.4:27153923-27153942 | MS.gene28568:CDS | 45.0% | |
GTTATCAATTCCCTGGTCTG+GGG | - | chr8.4:27156183-27156202 | None:intergenic | 45.0% | |
GTTGTTAGGTCTGTTGAGCT+TGG | + | chr8.4:27153953-27153972 | MS.gene28568:CDS | 45.0% | |
TAGGGCCAAACTAACAAGGT+TGG | + | chr8.4:27155315-27155334 | MS.gene28568:intron | 45.0% | |
TCATGAAGCCTTTGACGACA+CGG | - | chr8.4:27153706-27153725 | None:intergenic | 45.0% | |
TCGAAGTACACTCTTGGGTT+CGG | - | chr8.4:27153524-27153543 | None:intergenic | 45.0% | |
TCGCAAGGCTTTGCGTTATT+TGG | + | chr8.4:27154597-27154616 | MS.gene28568:CDS | 45.0% | |
TCTCTTGAAGCTATCCAGAG+CGG | - | chr8.4:27156342-27156361 | None:intergenic | 45.0% | |
TGAATAGACTCCTTCAACCC+TGG | - | chr8.4:27156599-27156618 | None:intergenic | 45.0% | |
TTATAACACTGGGGTCCTGA+GGG | + | chr8.4:27156485-27156504 | MS.gene28568:intron | 45.0% | |
TTATCAATTCCCTGGTCTGG+GGG | - | chr8.4:27156182-27156201 | None:intergenic | 45.0% | |
TTTGGACATGTGTTGGGAGA+AGG | + | chr8.4:27154615-27154634 | MS.gene28568:CDS | 45.0% | |
! | AACTGACTCCCATTGGTGTT+TGG | - | chr8.4:27153857-27153876 | None:intergenic | 45.0% |
! | ATGGGAAGCATGTGGTGTTT+GGG | + | chr8.4:27153909-27153928 | MS.gene28568:CDS | 45.0% |
! | CGGAAATTTTCGGCGGTTTT+GGG | - | chr8.4:27153608-27153627 | None:intergenic | 45.0% |
! | GAGAGATCGGAAATTTTCGG+CGG | - | chr8.4:27153615-27153634 | None:intergenic | 45.0% |
! | GAGGATTTGTTTACCCGAAC+AGG | - | chr8.4:27156736-27156755 | None:intergenic | 45.0% |
! | GCCAAACTAACAAGGTTGGT+GGG | + | chr8.4:27155319-27155338 | MS.gene28568:intron | 45.0% |
! | GGCTTGGTATCAAGATCAAC+AGG | - | chr8.4:27154103-27154122 | None:intergenic | 45.0% |
! | GTGGAAATGATGTGACTTGG+AGG | - | chr8.4:27156755-27156774 | None:intergenic | 45.0% |
! | TCCCTTTCCGTTCGTGTTTT+AGG | - | chr8.4:27153811-27153830 | None:intergenic | 45.0% |
! | TCGGAAATTTTCGGCGGTTT+TGG | - | chr8.4:27153609-27153628 | None:intergenic | 45.0% |
!! | CAAACTAACAAGGTTGGTGG+GGG | + | chr8.4:27155321-27155340 | MS.gene28568:intron | 45.0% |
!! | CAGAGAAGAGCACTGCTTTA+AGG | + | chr8.4:27154772-27154791 | MS.gene28568:intron | 45.0% |
!! | CCAAACTAACAAGGTTGGTG+GGG | + | chr8.4:27155320-27155339 | MS.gene28568:intron | 45.0% |
!! | TACTTCGACATAAGCATCGG+CGG | + | chr8.4:27153536-27153555 | MS.gene28568:CDS | 45.0% |
ACCTTGCTCTGTTCTTCAGG+AGG | + | chr8.4:27156985-27157004 | MS.gene28568:intron | 50.0% | |
ACTCAAAAACAGCCTCCCTC+AGG | - | chr8.4:27156503-27156522 | None:intergenic | 50.0% | |
ATCCACCATTCAAGCTCCTC+CGG | - | chr8.4:27154124-27154143 | None:intergenic | 50.0% | |
ATCTTCCACCGTGTCGTCAA+AGG | + | chr8.4:27153695-27153714 | MS.gene28568:CDS | 50.0% | |
ATTGCTGAAGGGGAGGATGA+AGG | + | chr8.4:27154034-27154053 | MS.gene28568:CDS | 50.0% | |
CCCCACCAACCTTGTTAGTT+TGG | - | chr8.4:27155323-27155342 | None:intergenic | 50.0% | |
CCTTGCTCTGTTCTTCAGGA+GGG | + | chr8.4:27156986-27157005 | MS.gene28568:intron | 50.0% | |
CTCACTGCCCATTTCTGAGT+AGG | + | chr8.4:27155380-27155399 | MS.gene28568:intron | 50.0% | |
CTTATAACACTGGGGTCCTG+AGG | + | chr8.4:27156484-27156503 | MS.gene28568:intron | 50.0% | |
CTTGAAATGGAGAGGGACGT+TGG | - | chr8.4:27153669-27153688 | None:intergenic | 50.0% | |
GAAGCATGTGGTGTTTGGGA+AGG | + | chr8.4:27153913-27153932 | MS.gene28568:CDS | 50.0% | |
GACATGTGTTGGGAGAAGGA+TGG | + | chr8.4:27154619-27154638 | MS.gene28568:CDS | 50.0% | |
GATTGTGGGGAGATTGCTGA+AGG | + | chr8.4:27154022-27154041 | MS.gene28568:CDS | 50.0% | |
GCAATCACAACATCCTGCTC+CGG | - | chr8.4:27154001-27154020 | None:intergenic | 50.0% | |
GGCCAAACTAACAAGGTTGG+TGG | + | chr8.4:27155318-27155337 | MS.gene28568:intron | 50.0% | |
GGGAAGGTTGTGAAAGGGAT+TGG | + | chr8.4:27153929-27153948 | MS.gene28568:CDS | 50.0% | |
GTACGCAATTGCCAGGAAGA+AGG | + | chr8.4:27157020-27157039 | MS.gene28568:CDS | 50.0% | |
GTGCTCTTCTCTGCAAAGTC+AGG | - | chr8.4:27154765-27154784 | None:intergenic | 50.0% | |
TAGGTCTGTTGAGCTTGGTC+CGG | + | chr8.4:27153958-27153977 | MS.gene28568:CDS | 50.0% | |
TCGGACTTTGCAATGCACGA+TGG | + | chr8.4:27155589-27155608 | MS.gene28568:CDS | 50.0% | |
TGATCTTGATACCAAGCCGG+AGG | + | chr8.4:27154105-27154124 | MS.gene28568:CDS | 50.0% | |
TTGCTGAAGGGGAGGATGAA+GGG | + | chr8.4:27154035-27154054 | MS.gene28568:CDS | 50.0% | |
TTGTGGGGAGATTGCTGAAG+GGG | + | chr8.4:27154024-27154043 | MS.gene28568:CDS | 50.0% | |
TTTGACGACACGGTGGAAGA+TGG | - | chr8.4:27153696-27153715 | None:intergenic | 50.0% | |
! | ACTCCCATTGGTGTTTGGAC+CGG | - | chr8.4:27153852-27153871 | None:intergenic | 50.0% |
! | CTTTGGCTTACCAGGGTTGA+AGG | + | chr8.4:27156586-27156605 | MS.gene28568:intron | 50.0% |
! | GATGGGAAGCATGTGGTGTT+TGG | + | chr8.4:27153908-27153927 | MS.gene28568:CDS | 50.0% |
! | GCATTTGGATGGGAAGCATG+TGG | + | chr8.4:27153901-27153920 | MS.gene28568:CDS | 50.0% |
! | TGTCCTGTGCCTGTTTTCTC+CGG | + | chr8.4:27155222-27155241 | MS.gene28568:intron | 50.0% |
!! | AGGATGGTGTTGACCAAGGT+CGG | + | chr8.4:27154635-27154654 | MS.gene28568:intron | 50.0% |
!! | GAGAAGGATGGTGTTGACCA+AGG | + | chr8.4:27154631-27154650 | MS.gene28568:CDS | 50.0% |
AGCTCTGTTTCGCAAAGGCC+AGG | + | chr8.4:27155624-27155643 | MS.gene28568:CDS | 55.0% | |
CCCTCCTGAAGAACAGAGCA+AGG | - | chr8.4:27156989-27157008 | None:intergenic | 55.0% | |
CTGTTGAGCTTGGTCCGGTT+GGG | + | chr8.4:27153963-27153982 | MS.gene28568:CDS | 55.0% | |
CTGTTTCGCAAAGGCCAGGT+TGG | + | chr8.4:27155628-27155647 | MS.gene28568:intron | 55.0% | |
CTTACAGAACCCCCAGACCA+GGG | + | chr8.4:27156170-27156189 | MS.gene28568:intron | 55.0% | |
GGTAGATCGTTCTCCCCAAC+CGG | - | chr8.4:27153980-27153999 | None:intergenic | 55.0% | |
GGTTGGGGAGAACGATCTAC+CGG | + | chr8.4:27153979-27153998 | MS.gene28568:CDS | 55.0% | |
GTTTGGACCGGTATTCGCCA+TGG | - | chr8.4:27153840-27153859 | None:intergenic | 55.0% | |
TCTGTTGAGCTTGGTCCGGT+TGG | + | chr8.4:27153962-27153981 | MS.gene28568:CDS | 55.0% | |
TCTTACAGAACCCCCAGACC+AGG | + | chr8.4:27156169-27156188 | MS.gene28568:intron | 55.0% | |
TGAAGCCTTTGACGACACGG+TGG | - | chr8.4:27153703-27153722 | None:intergenic | 55.0% | |
TGCTGAAGGGGAGGATGAAG+GGG | + | chr8.4:27154036-27154055 | MS.gene28568:CDS | 55.0% | |
TGTTGAGCTTGGTCCGGTTG+GGG | + | chr8.4:27153964-27153983 | MS.gene28568:CDS | 55.0% | |
TTCACAAGGTGGTAGGCCAC+CGG | - | chr8.4:27155244-27155263 | None:intergenic | 55.0% | |
TTTCGCCGGTGCAGAGAGAT+CGG | - | chr8.4:27153628-27153647 | None:intergenic | 55.0% | |
! | TCTCTCTGCACCGGCGAAAA+AGG | + | chr8.4:27153629-27153648 | MS.gene28568:CDS | 55.0% |
! | TGCACCGGCGAAAAAGGCAT+CGG | + | chr8.4:27153635-27153654 | MS.gene28568:CDS | 55.0% |
!! | TGGACCGATGCCTTTTTCGC+CGG | - | chr8.4:27153642-27153661 | None:intergenic | 55.0% |
!!! | GGCGGTTTTGGGAACGACAT+CGG | - | chr8.4:27153597-27153616 | None:intergenic | 55.0% |
ACCGGCGGCGAGTCAATCTA+CGG | + | chr8.4:27153758-27153777 | MS.gene28568:CDS | 60.0% | |
ACGAGGACGCCGCATTTGGA+TGG | + | chr8.4:27153890-27153909 | MS.gene28568:CDS | 60.0% | |
AGCCGGAGGAGCTTGAATGG+TGG | + | chr8.4:27154119-27154138 | MS.gene28568:CDS | 60.0% | |
AGCTATCCAGAGCGGCATCC+AGG | - | chr8.4:27156334-27156353 | None:intergenic | 60.0% | |
CAATGACCTGGATGCCGCTC+TGG | + | chr8.4:27156325-27156344 | MS.gene28568:CDS | 60.0% | |
CCAAGCCGGAGGAGCTTGAA+TGG | + | chr8.4:27154116-27154135 | MS.gene28568:CDS | 60.0% | |
CCACCGGAGAAAACAGGCAC+AGG | - | chr8.4:27155228-27155247 | None:intergenic | 60.0% | |
CCATTCAAGCTCCTCCGGCT+TGG | - | chr8.4:27154119-27154138 | None:intergenic | 60.0% | |
CGAGGACGCCGCATTTGGAT+GGG | + | chr8.4:27153891-27153910 | MS.gene28568:CDS | 60.0% | |
GGAGAACGATCTACCGGAGC+AGG | + | chr8.4:27153985-27154004 | MS.gene28568:CDS | 60.0% | |
GGTAGGCCACCGGAGAAAAC+AGG | - | chr8.4:27155234-27155253 | None:intergenic | 60.0% | |
TAACACTGGGGTCCTGAGGG+AGG | + | chr8.4:27156488-27156507 | MS.gene28568:intron | 60.0% | |
TGGAGAGGGACGTTGGTGTG+TGG | - | chr8.4:27153662-27153681 | None:intergenic | 60.0% | |
TGGGGAGATTGCTGAAGGGG+AGG | + | chr8.4:27154027-27154046 | MS.gene28568:CDS | 60.0% | |
! | CCTGTGCCTGTTTTCTCCGG+TGG | + | chr8.4:27155225-27155244 | MS.gene28568:intron | 60.0% |
!! | AAGCATCGGCGGTGAACTCG+AGG | + | chr8.4:27153547-27153566 | MS.gene28568:CDS | 60.0% |
!! | ACCGTAGATTGACTCGCCGC+CGG | - | chr8.4:27153762-27153781 | None:intergenic | 60.0% |
!! | AGCATCGGCGGTGAACTCGA+GGG | + | chr8.4:27153548-27153567 | MS.gene28568:CDS | 60.0% |
AGGCGGAGATGTCACCGCCT+TGG | - | chr8.4:27153730-27153749 | None:intergenic | 65.0% | |
ATCTCCGCCTCCGACGGAAC+CGG | + | chr8.4:27153740-27153759 | MS.gene28568:CDS | 65.0% | |
GACGACGAGGACGCCGCATT+TGG | + | chr8.4:27153886-27153905 | MS.gene28568:CDS | 65.0% | |
GGTGACATCTCCGCCTCCGA+CGG | + | chr8.4:27153734-27153753 | MS.gene28568:CDS | 65.0% | |
!! | TGACTCGCCGCCGGTTCCGT+CGG | - | chr8.4:27153753-27153772 | None:intergenic | 70.0% |
TCCGCCTCCGACGGAACCGG+CGG | + | chr8.4:27153743-27153762 | MS.gene28568:CDS | 75.0% | |
!!! | CTCGCCGCCGGTTCCGTCGG+AGG | - | chr8.4:27153750-27153769 | None:intergenic | 80.0% |
!!! | GCCGCCGGTTCCGTCGGAGG+CGG | - | chr8.4:27153747-27153766 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 27153518 | 27157191 | 27153518 | ID=MS.gene28568 |
chr8.4 | mRNA | 27153518 | 27157191 | 27153518 | ID=MS.gene28568.t1;Parent=MS.gene28568 |
chr8.4 | exon | 27153518 | 27154189 | 27153518 | ID=MS.gene28568.t1.exon1;Parent=MS.gene28568.t1 |
chr8.4 | CDS | 27153518 | 27154189 | 27153518 | ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1 |
chr8.4 | exon | 27154565 | 27154652 | 27154565 | ID=MS.gene28568.t1.exon2;Parent=MS.gene28568.t1 |
chr8.4 | CDS | 27154565 | 27154652 | 27154565 | ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1 |
chr8.4 | exon | 27154775 | 27154827 | 27154775 | ID=MS.gene28568.t1.exon3;Parent=MS.gene28568.t1 |
chr8.4 | CDS | 27154775 | 27154827 | 27154775 | ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1 |
chr8.4 | exon | 27155544 | 27155645 | 27155544 | ID=MS.gene28568.t1.exon4;Parent=MS.gene28568.t1 |
chr8.4 | CDS | 27155544 | 27155645 | 27155544 | ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1 |
chr8.4 | exon | 27156311 | 27156386 | 27156311 | ID=MS.gene28568.t1.exon5;Parent=MS.gene28568.t1 |
chr8.4 | CDS | 27156311 | 27156386 | 27156311 | ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1 |
chr8.4 | exon | 27157004 | 27157041 | 27157004 | ID=MS.gene28568.t1.exon6;Parent=MS.gene28568.t1 |
chr8.4 | CDS | 27157004 | 27157041 | 27157004 | ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1 |
chr8.4 | exon | 27157138 | 27157191 | 27157138 | ID=MS.gene28568.t1.exon7;Parent=MS.gene28568.t1 |
chr8.4 | CDS | 27157138 | 27157191 | 27157138 | ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1 |
Gene Sequence |
Protein sequence |