AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28568


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28568.t1 MTR_8g079690 99.167 360 3 0 1 360 1 360 0.0 736
MS.gene28568.t1 MTR_4g086760 73.684 361 94 1 1 360 1 361 0.0 563
MS.gene28568.t1 MTR_4g086760 73.795 332 86 1 1 331 1 332 0.0 521
MS.gene28568.t1 MTR_4g086760 73.248 314 83 1 1 313 1 314 2.75e-174 487
MS.gene28568.t1 MTR_7g116340 62.857 175 61 3 1 174 1 172 1.73e-69 215
MS.gene28568.t1 MTR_4g075290 60.920 174 66 2 1 174 1 172 7.07e-69 214
MS.gene28568.t1 MTR_7g095750 60.773 181 68 2 3 182 6 184 7.28e-69 228
MS.gene28568.t1 MTR_3g463900 60.355 169 65 2 5 173 35 201 4.21e-64 202
MS.gene28568.t1 MTR_3g070500 58.480 171 69 2 5 175 65 233 3.60e-63 201
MS.gene28568.t1 MTR_3g117750 57.895 171 70 2 5 175 13 181 1.01e-62 199
MS.gene28568.t1 MTR_7g110980 55.030 169 68 1 5 173 97 257 2.84e-60 195
MS.gene28568.t1 MTR_1g117010 56.977 172 63 2 5 173 78 241 6.74e-60 193
MS.gene28568.t1 MTR_1g117010 56.977 172 63 2 5 173 78 241 6.74e-60 193
MS.gene28568.t1 MTR_1g085560 57.647 170 63 2 5 173 86 247 5.90e-59 191
MS.gene28568.t1 MTR_4g073650 56.805 169 72 1 5 173 47 214 3.02e-58 188
MS.gene28568.t1 MTR_8g040180 54.651 172 74 2 3 173 17 185 6.84e-57 184
MS.gene28568.t1 MTR_3g070500 64.228 123 43 1 5 127 65 186 9.86e-50 165
MS.gene28568.t1 MTR_3g107660 47.500 200 100 3 3 201 9 204 6.61e-46 168
MS.gene28568.t1 MTR_1g011980 50.292 171 81 3 6 175 9 176 2.84e-44 162
MS.gene28568.t1 MTR_8g036015 48.993 149 63 3 18 165 10 146 1.49e-38 135
MS.gene28568.t1 MTR_2g085075 50.649 154 63 4 18 170 471 612 1.36e-36 140
MS.gene28568.t1 MTR_3g070500 62.000 100 37 1 5 104 65 163 1.49e-36 130
MS.gene28568.t1 MTR_3g070500 63.542 96 34 1 5 100 65 159 1.50e-36 130
MS.gene28568.t1 MTR_7g105220 44.242 165 74 5 4 167 10 157 5.64e-34 123
MS.gene28568.t1 MTR_5g015500 39.594 197 84 6 18 213 314 476 4.59e-31 124
MS.gene28568.t1 MTR_5g015500 39.594 197 84 6 18 213 354 516 7.27e-31 123
MS.gene28568.t1 MTR_3g085705 52.273 88 38 2 64 151 32 115 5.30e-21 87.8
MS.gene28568.t1 MTR_2g023120 45.238 126 55 4 18 141 22 135 1.38e-20 93.2
MS.gene28568.t1 MTR_8g080980 35.366 164 96 4 203 359 383 543 5.01e-17 82.8
MS.gene28568.t1 MTR_6g084140 36.620 142 69 5 18 150 10 139 6.51e-17 82.4
MS.gene28568.t1 MTR_6g084140 36.620 142 69 5 18 150 27 156 6.70e-17 82.4
MS.gene28568.t1 MTR_8g012340 34.965 143 89 3 219 360 409 548 1.58e-16 81.3
MS.gene28568.t1 MTR_8g442420 35.915 142 70 5 18 150 10 139 6.15e-16 79.3
MS.gene28568.t1 MTR_7g053470 33.333 174 105 5 194 359 369 539 3.18e-15 77.0
MS.gene28568.t1 MTR_1g094065 33.758 157 81 7 17 170 88 224 1.95e-13 69.3
MS.gene28568.t1 MTR_1g035360 31.818 154 89 4 17 170 87 224 8.10e-12 64.7
MS.gene28568.t1 MTR_1g017870 32.164 171 92 6 203 359 381 541 9.86e-12 66.6
MS.gene28568.t1 MTR_1g017870 32.164 171 92 6 203 359 381 541 1.17e-11 66.2
MS.gene28568.t1 MTR_1g017870 32.164 171 92 6 203 359 357 517 1.70e-11 65.9
MS.gene28568.t1 MTR_1g017870 31.818 176 96 6 198 359 166 331 1.75e-11 65.1
MS.gene28568.t1 MTR_1g017870 31.818 176 96 6 198 359 250 415 1.93e-11 65.5
MS.gene28568.t1 MTR_1g017870 31.818 176 96 6 198 359 250 415 2.10e-11 65.5
MS.gene28568.t1 MTR_1g017870 31.818 176 96 6 198 359 166 331 2.27e-11 64.7
MS.gene28568.t1 MTR_2g461260 25.628 199 99 8 16 171 90 282 6.99e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28568.t1 AT2G15790 71.111 360 103 1 1 359 1 360 0.0 546
MS.gene28568.t1 AT3G63400 66.667 174 55 2 3 175 6 177 1.67e-74 236
MS.gene28568.t1 AT3G63400 66.667 174 55 2 3 175 6 177 1.20e-72 236
MS.gene28568.t1 AT3G63400 66.667 174 55 2 3 175 6 177 1.20e-72 236
MS.gene28568.t1 AT3G63400 66.667 174 55 2 3 175 6 177 1.20e-72 236
MS.gene28568.t1 AT4G34870 63.429 175 60 3 1 174 1 172 9.59e-71 219
MS.gene28568.t1 AT2G16600 62.428 173 61 3 3 174 4 173 1.46e-69 216
MS.gene28568.t1 AT4G38740 61.714 175 63 3 1 174 1 172 1.55e-69 216
MS.gene28568.t1 AT2G21130 61.494 174 63 3 3 175 4 174 3.47e-69 215
MS.gene28568.t1 AT3G56070 63.218 174 60 3 1 173 1 171 3.59e-69 215
MS.gene28568.t1 AT3G56070 63.218 174 60 3 1 173 1 171 3.59e-69 215
MS.gene28568.t1 AT3G55920 60.000 170 66 2 5 174 60 227 4.24e-64 204
MS.gene28568.t1 AT2G29960 59.763 169 66 2 5 173 33 199 1.04e-63 202
MS.gene28568.t1 AT2G29960 59.763 169 66 2 5 173 33 199 1.04e-63 202
MS.gene28568.t1 AT3G62030 58.580 169 62 1 5 173 96 256 4.68e-63 202
MS.gene28568.t1 AT3G62030 58.580 169 62 1 5 173 95 255 5.00e-63 202
MS.gene28568.t1 AT5G13120 56.818 176 65 2 5 177 91 258 1.26e-62 201
MS.gene28568.t1 AT5G13120 56.818 176 65 2 5 177 87 254 1.33e-62 201
MS.gene28568.t1 AT3G62030 58.580 169 62 1 5 173 149 309 1.57e-62 202
MS.gene28568.t1 AT5G58710 58.580 169 68 2 5 173 36 202 1.63e-60 194
MS.gene28568.t1 AT2G29960 57.396 169 60 3 5 173 33 189 3.85e-58 187
MS.gene28568.t1 AT2G38730 55.814 172 72 2 3 173 31 199 4.74e-58 187
MS.gene28568.t1 AT4G34960 53.846 169 77 1 5 173 48 215 1.33e-56 184
MS.gene28568.t1 AT2G16600 54.913 173 52 3 3 174 4 151 6.86e-56 180
MS.gene28568.t1 AT4G34960 57.377 122 51 1 5 126 48 168 1.09e-43 149
MS.gene28568.t1 AT4G32420 47.953 171 86 2 3 172 6 174 1.71e-42 158
MS.gene28568.t1 AT4G32420 47.953 171 86 2 3 172 6 174 1.71e-42 158
MS.gene28568.t1 AT4G32420 47.953 171 86 2 3 172 6 174 1.71e-42 158
MS.gene28568.t1 AT4G32420 47.953 171 86 2 3 172 6 174 1.71e-42 158
MS.gene28568.t1 AT4G32420 48.993 149 76 0 3 151 6 154 1.46e-40 152
MS.gene28568.t1 AT3G22920 46.154 182 86 6 1 179 1 173 4.94e-40 141
MS.gene28568.t1 AT3G44600 50.000 154 64 3 18 170 485 626 2.26e-37 142
MS.gene28568.t1 AT1G01940 48.322 149 64 3 18 165 10 146 2.73e-37 132
MS.gene28568.t1 AT2G36130 43.030 165 76 5 4 167 10 157 1.51e-33 122
MS.gene28568.t1 AT5G67530 43.506 154 74 4 18 170 353 494 1.89e-31 125
MS.gene28568.t1 AT4G33060 43.571 140 64 5 18 155 22 148 2.12e-24 104
MS.gene28568.t1 AT3G25230 36.207 174 100 5 194 359 375 545 3.49e-18 86.3
MS.gene28568.t1 AT3G25230 36.207 174 100 5 194 359 375 545 4.56e-18 85.9
MS.gene28568.t1 AT1G53720 33.962 159 84 5 18 167 10 156 6.38e-18 84.3
MS.gene28568.t1 AT1G53720 33.962 159 84 5 18 167 10 156 1.46e-17 84.3
MS.gene28568.t1 AT5G48570 32.121 165 102 3 203 360 395 556 1.62e-15 78.2
MS.gene28568.t1 AT1G58450 35.172 145 83 4 219 359 17 154 6.25e-13 66.6

Find 106 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCAAGGCTTTGCGTTATT+TGG 0.146656 8.4:+27154597 MS.gene28568:CDS
CAGAGAAGAGCACTGCTTTA+AGG 0.171724 8.4:+27154772 MS.gene28568:intron
CAGGCCTGTAAATTAAAATT+AGG 0.205661 8.4:+27155541 MS.gene28568:intron
TCTCTCTGCACCGGCGAAAA+AGG 0.252295 8.4:+27153629 MS.gene28568:CDS
GATGGGAAGCATGTGGTGTT+TGG 0.308347 8.4:+27153908 MS.gene28568:CDS
TGTATTACTGACCTTCTTCC+TGG 0.341120 8.4:-27157031 None:intergenic
AACTGACTCCCATTGGTGTT+TGG 0.342691 8.4:-27153854 None:intergenic
CTGTTGAGCTTGGTCCGGTT+GGG 0.343040 8.4:+27153963 MS.gene28568:CDS
ATGGGAAGCATGTGGTGTTT+GGG 0.357969 8.4:+27153909 MS.gene28568:CDS
CTTTGGAAATGAACACTATA+AGG 0.386961 8.4:+27154168 MS.gene28568:CDS
GACGACGAGGACGCCGCATT+TGG 0.389302 8.4:+27153886 MS.gene28568:CDS
CAGTGGAGCTTTACTTGATT+CGG 0.393358 8.4:+27155570 MS.gene28568:CDS
AATAGTCACCAACCATCATT+TGG 0.395698 8.4:-27156377 None:intergenic
TTGCTGAAGGGGAGGATGAA+GGG 0.404415 8.4:+27154035 MS.gene28568:CDS
TGAAAGGGATTGGAGTTGTT+AGG 0.404472 8.4:+27153939 MS.gene28568:CDS
GGGAAGGTTGTGAAAGGGAT+TGG 0.404533 8.4:+27153929 MS.gene28568:CDS
GTTGAATCTATCAAGGGCTT+TGG 0.411683 8.4:+27154151 MS.gene28568:CDS
ACCTAAAACACGAACGGAAA+GGG 0.412914 8.4:+27153807 MS.gene28568:CDS
CAATGACCTGGATGCCGCTC+TGG 0.426988 8.4:+27156325 MS.gene28568:CDS
GCGTTATTTGGACATGTGTT+GGG 0.434614 8.4:+27154609 MS.gene28568:CDS
GGAAGATGGATTTCTTGAAA+TGG 0.436360 8.4:-27153679 None:intergenic
TGCGTTATTTGGACATGTGT+TGG 0.447762 8.4:+27154608 MS.gene28568:CDS
ATCTCCGCCTCCGACGGAAC+CGG 0.449439 8.4:+27153740 MS.gene28568:CDS
ATCCACCATTCAAGCTCCTC+CGG 0.449666 8.4:-27154121 None:intergenic
ATTGCTGAAGGGGAGGATGA+AGG 0.452826 8.4:+27154034 MS.gene28568:CDS
TCTGTTGAGCTTGGTCCGGT+TGG 0.454918 8.4:+27153962 MS.gene28568:CDS
ATGTTGTGATTGCTGATTGT+GGG 0.460587 8.4:+27154008 MS.gene28568:CDS
GGCTTGGTATCAAGATCAAC+AGG 0.465685 8.4:-27154100 None:intergenic
GGTAGATCGTTCTCCCCAAC+CGG 0.469866 8.4:-27153977 None:intergenic
ACGAGGACGCCGCATTTGGA+TGG 0.473500 8.4:+27153890 MS.gene28568:CDS
TTTGGACATGTGTTGGGAGA+AGG 0.474985 8.4:+27154615 MS.gene28568:CDS
AGCTCTGTTTCGCAAAGGCC+AGG 0.476684 8.4:+27155624 MS.gene28568:CDS
TGTTGAGCTTGGTCCGGTTG+GGG 0.477465 8.4:+27153964 MS.gene28568:CDS
GTTGTTAGGTCTGTTGAGCT+TGG 0.477926 8.4:+27153953 MS.gene28568:CDS
GAATGCTGTTGAATCTATCA+AGG 0.478392 8.4:+27154144 MS.gene28568:CDS
TCGAAGTACACTCTTGGGTT+CGG 0.485037 8.4:-27153521 None:intergenic
CTTATGTCGAAGTACACTCT+TGG 0.486685 8.4:-27153527 None:intergenic
CCAAGCCGGAGGAGCTTGAA+TGG 0.487486 8.4:+27154116 MS.gene28568:CDS
GGTTGCTGATAGACATGATA+AGG 0.494242 8.4:+27157137 MS.gene28568:intron
TTTGACGACACGGTGGAAGA+TGG 0.495856 8.4:-27153693 None:intergenic
AGCTATCCAGAGCGGCATCC+AGG 0.495882 8.4:-27156331 None:intergenic
TGCTGAAGGGGAGGATGAAG+GGG 0.498218 8.4:+27154036 MS.gene28568:CDS
TGACTCGCCGCCGGTTCCGT+CGG 0.502311 8.4:-27153750 None:intergenic
TTATGTCGAAGTACACTCTT+GGG 0.506372 8.4:-27153526 None:intergenic
CCATTCAAGCTCCTCCGGCT+TGG 0.508001 8.4:-27154116 None:intergenic
TTTCGCCGGTGCAGAGAGAT+CGG 0.511855 8.4:-27153625 None:intergenic
GCCGCCGGTTCCGTCGGAGG+CGG 0.516656 8.4:-27153744 None:intergenic
AGGCGGAGATGTCACCGCCT+TGG 0.518147 8.4:-27153727 None:intergenic
ATCTTCCACCGTGTCGTCAA+AGG 0.519364 8.4:+27153695 MS.gene28568:CDS
ATACCGGTCCAAACACCAAT+GGG 0.522499 8.4:+27153846 MS.gene28568:CDS
TTAGAGTTGGAGCCAAATGA+TGG 0.524064 8.4:+27156365 MS.gene28568:CDS
CTTCAAGAGAGCATTAGAGT+TGG 0.526509 8.4:+27156352 MS.gene28568:CDS
AAGCATCGGCGGTGAACTCG+AGG 0.527582 8.4:+27153547 MS.gene28568:CDS
GTGTTTGGGAAGGTTGTGAA+AGG 0.528665 8.4:+27153923 MS.gene28568:CDS
TAGGTCTGTTGAGCTTGGTC+CGG 0.531881 8.4:+27153958 MS.gene28568:CDS
ACTCCCATTGGTGTTTGGAC+CGG 0.534347 8.4:-27153849 None:intergenic
TTGTGGGGAGATTGCTGAAG+GGG 0.543269 8.4:+27154024 MS.gene28568:CDS
GGAGAACGATCTACCGGAGC+AGG 0.545330 8.4:+27153985 MS.gene28568:CDS
GATGTTGTGATTGCTGATTG+TGG 0.548690 8.4:+27154007 MS.gene28568:CDS
CTCGCCGCCGGTTCCGTCGG+AGG 0.551251 8.4:-27153747 None:intergenic
ACAGAAGCAAGATTATAAGA+TGG 0.553869 8.4:+27154561 MS.gene28568:intron
ACCGTAGATTGACTCGCCGC+CGG 0.554056 8.4:-27153759 None:intergenic
TGGGGAGATTGCTGAAGGGG+AGG 0.554625 8.4:+27154027 MS.gene28568:CDS
TGTTTGGGAAGGTTGTGAAA+GGG 0.554643 8.4:+27153924 MS.gene28568:CDS
CTTGAAATGGAGAGGGACGT+TGG 0.557692 8.4:-27153666 None:intergenic
GACCTAAAACACGAACGGAA+AGG 0.557928 8.4:+27153806 MS.gene28568:CDS
GCAATCACAACATCCTGCTC+CGG 0.561181 8.4:-27153998 None:intergenic
GTACGCAATTGCCAGGAAGA+AGG 0.562491 8.4:+27157020 MS.gene28568:CDS
CGAGGACGCCGCATTTGGAT+GGG 0.564333 8.4:+27153891 MS.gene28568:CDS
GTTTGGACCGGTATTCGCCA+TGG 0.566119 8.4:-27153837 None:intergenic
ACCGGCGGCGAGTCAATCTA+CGG 0.568908 8.4:+27153758 MS.gene28568:CDS
GAAGCATGTGGTGTTTGGGA+AGG 0.570028 8.4:+27153913 MS.gene28568:CDS
ATGGATTTCTTGAAATGGAG+AGG 0.571440 8.4:-27153674 None:intergenic
GTCAAAGGCTTCATGATCCA+AGG 0.574138 8.4:+27153710 MS.gene28568:CDS
TGTGATACTTACTGAACTGT+TGG 0.576217 8.4:-27154817 None:intergenic
TGGATTTCTTGAAATGGAGA+GGG 0.579737 8.4:-27153673 None:intergenic
TCCGCCTCCGACGGAACCGG+CGG 0.580073 8.4:+27153743 MS.gene28568:CDS
GGTGACATCTCCGCCTCCGA+CGG 0.583678 8.4:+27153734 MS.gene28568:CDS
GATTGTGGGGAGATTGCTGA+AGG 0.584654 8.4:+27154022 MS.gene28568:CDS
GACATGTGTTGGGAGAAGGA+TGG 0.614412 8.4:+27154619 MS.gene28568:CDS
GGTTGGGGAGAACGATCTAC+CGG 0.615288 8.4:+27153979 MS.gene28568:CDS
AGCATCGGCGGTGAACTCGA+GGG 0.617751 8.4:+27153548 MS.gene28568:CDS
TCATGAAGCCTTTGACGACA+CGG 0.625678 8.4:-27153703 None:intergenic
TGTTGATCTTGATACCAAGC+CGG 0.625762 8.4:+27154102 MS.gene28568:CDS
AATACCGGTCCAAACACCAA+TGG 0.627525 8.4:+27153845 MS.gene28568:CDS
TGTTGTGATTGCTGATTGTG+GGG 0.627931 8.4:+27154009 MS.gene28568:CDS
AGCCGGAGGAGCTTGAATGG+TGG 0.631915 8.4:+27154119 MS.gene28568:CDS
AATTTCCGATCTCTCTGCAC+CGG 0.632806 8.4:+27153620 MS.gene28568:CDS
ATTTCGACCTAAAACACGAA+CGG 0.634503 8.4:+27153801 MS.gene28568:CDS
TCGGACTTTGCAATGCACGA+TGG 0.636187 8.4:+27155589 MS.gene28568:CDS
AATGCTGTTGAATCTATCAA+GGG 0.636468 8.4:+27154145 MS.gene28568:CDS
ATTGTGGGGAGATTGCTGAA+GGG 0.637501 8.4:+27154023 MS.gene28568:CDS
TGGAGAGGGACGTTGGTGTG+TGG 0.640483 8.4:-27153659 None:intergenic
GTATATGTTACTCAATGACC+TGG 0.641203 8.4:+27156313 MS.gene28568:CDS
GTGTACTTCGACATAAGCAT+CGG 0.649168 8.4:+27153533 MS.gene28568:CDS
GCTAAAGCTCTGTTTCGCAA+AGG 0.651141 8.4:+27155619 MS.gene28568:CDS
GAGAAGGATGGTGTTGACCA+AGG 0.659869 8.4:+27154631 MS.gene28568:CDS
ACATGCTTCCCATCCAAATG+CGG 0.664004 8.4:-27153899 None:intergenic
TACTTCGACATAAGCATCGG+CGG 0.673491 8.4:+27153536 MS.gene28568:CDS
TGATCTTGATACCAAGCCGG+AGG 0.689161 8.4:+27154105 MS.gene28568:CDS
TTAAAATTAGGTGACCTCAG+TGG 0.703190 8.4:+27155553 MS.gene28568:CDS
GCATTTGGATGGGAAGCATG+TGG 0.713375 8.4:+27153901 MS.gene28568:CDS
TGAAGCCTTTGACGACACGG+TGG 0.743535 8.4:-27153700 None:intergenic
TCTCTTGAAGCTATCCAGAG+CGG 0.756413 8.4:-27156339 None:intergenic
AAAGGCTTCATGATCCAAGG+CGG 0.764461 8.4:+27153713 MS.gene28568:CDS
AATCAAGTAAAGCTCCACTG+AGG 0.768633 8.4:-27155567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACTATATATAATACA+TGG - chr8.4:27156260-27156279 None:intergenic 10.0%
!!! TTAATGTTTTAGTTTTATTT+GGG + chr8.4:27154467-27154486 MS.gene28568:intron 10.0%
!!! CTTAATGTTTTAGTTTTATT+TGG + chr8.4:27154466-27154485 MS.gene28568:intron 15.0%
!!! GTTATTAACTTTTTTAAAGA+TGG + chr8.4:27154058-27154077 MS.gene28568:CDS 15.0%
!!! TAAATGTGAATTAAATTTTC+AGG + chr8.4:27155522-27155541 MS.gene28568:intron 15.0%
!!! TTTTAAATCGAAATAGAATA+GGG + chr8.4:27154236-27154255 MS.gene28568:intron 15.0%
!!! TTTTTAAATCGAAATAGAAT+AGG + chr8.4:27154235-27154254 MS.gene28568:intron 15.0%
!! AAATTGACAAAAAGTTTAAG+GGG + chr8.4:27155931-27155950 MS.gene28568:intron 20.0%
!! AAGTATTTGTAAAGAAAACA+TGG - chr8.4:27155288-27155307 None:intergenic 20.0%
!! AATTACTTTCTTATAACACT+GGG + chr8.4:27156475-27156494 MS.gene28568:intron 20.0%
!! ACAAATTGACAAAAAGTTTA+AGG + chr8.4:27155929-27155948 MS.gene28568:intron 20.0%
!! AGTATTTGTAAAGAAAACAT+GGG - chr8.4:27155287-27155306 None:intergenic 20.0%
!! ATTAAAGACAAAACAATGAA+AGG - chr8.4:27156688-27156707 None:intergenic 20.0%
!! CAAATTGACAAAAAGTTTAA+GGG + chr8.4:27155930-27155949 MS.gene28568:intron 20.0%
!! TAAAGTAGCAAATTACAATT+CGG - chr8.4:27156024-27156043 None:intergenic 20.0%
!! TTAAAGACAAAACAATGAAA+GGG - chr8.4:27156687-27156706 None:intergenic 20.0%
!! TTATAAGTAAAAGTAAGTAG+CGG - chr8.4:27154390-27154409 None:intergenic 20.0%
!!! CAAAGTTAATTTGATATTTC+TGG + chr8.4:27156947-27156966 MS.gene28568:intron 20.0%
!!! GTAATTTGCTATTTGTTTTT+TGG + chr8.4:27156273-27156292 MS.gene28568:intron 20.0%
!!! TCATGTTTTGTAAATTTAGT+TGG + chr8.4:27155185-27155204 MS.gene28568:intron 20.0%
! AATATTCGAAAACAACAATG+AGG - chr8.4:27154311-27154330 None:intergenic 25.0%
! ACTAAAACATTAAGCTTACA+TGG - chr8.4:27154460-27154479 None:intergenic 25.0%
! AGCAATCAATTATTGAAAGT+CGG - chr8.4:27155038-27155057 None:intergenic 25.0%
! AGTCAAAACCATCAAATTTA+TGG + chr8.4:27156077-27156096 MS.gene28568:intron 25.0%
! ATAGATGACATTGTTAAACA+CGG - chr8.4:27155698-27155717 None:intergenic 25.0%
! ATTACTTTCTTATAACACTG+GGG + chr8.4:27156476-27156495 MS.gene28568:intron 25.0%
! ATTCTTTATGATTACCTTTG+TGG + chr8.4:27154512-27154531 MS.gene28568:intron 25.0%
! CAAATAAAAGATACACACTA+GGG - chr8.4:27154338-27154357 None:intergenic 25.0%
! CAATTACTTTCTTATAACAC+TGG + chr8.4:27156474-27156493 MS.gene28568:intron 25.0%
! CTATATATAATACATGGCTA+TGG - chr8.4:27156254-27156273 None:intergenic 25.0%
! GTCAAAACCATCAAATTTAT+GGG + chr8.4:27156078-27156097 MS.gene28568:intron 25.0%
! TACAAATACTTACTCTCTTA+GGG + chr8.4:27155297-27155316 MS.gene28568:intron 25.0%
! TAGTAAAATAGTCATTCACA+AGG - chr8.4:27155258-27155277 None:intergenic 25.0%
! TTAACAAGTCAAAGTGTAAA+TGG + chr8.4:27156808-27156827 MS.gene28568:intron 25.0%
! TTAAGTGAACTTATTGAAGA+AGG - chr8.4:27155500-27155519 None:intergenic 25.0%
! TTACAAATACTTACTCTCTT+AGG + chr8.4:27155296-27155315 MS.gene28568:intron 25.0%
! TTCATGTAGAAACATATCTT+TGG + chr8.4:27156569-27156588 MS.gene28568:intron 25.0%
! TTGATGCATATCTTTGTTAA+AGG + chr8.4:27154279-27154298 MS.gene28568:intron 25.0%
!! AAAATCATGAGAAGAGTTTT+AGG - chr8.4:27154986-27155005 None:intergenic 25.0%
!! AAATTTTCGTCTTCGAAATT+TGG - chr8.4:27153785-27153804 None:intergenic 25.0%
!! CATTATACTCTTTGCATTTT+AGG + chr8.4:27154212-27154231 MS.gene28568:intron 25.0%
!! TAAGGTGAATTTTTGTTCTT+TGG + chr8.4:27154186-27154205 MS.gene28568:intron 25.0%
!! TTTATTCTGTTTACTGCTTT+TGG + chr8.4:27157109-27157128 MS.gene28568:intron 25.0%
!!! AAGACTTTAGTTTTGGAAAT+TGG + chr8.4:27155102-27155121 MS.gene28568:intron 25.0%
!!! AATTTGATGGTTTTGACTTT+TGG - chr8.4:27156075-27156094 None:intergenic 25.0%
!!! AGACTTTAGTTTTGGAAATT+GGG + chr8.4:27155103-27155122 MS.gene28568:intron 25.0%
!!! AGTTTTATTTGGGAATATAG+TGG + chr8.4:27154477-27154496 MS.gene28568:intron 25.0%
!!! GTCACCTAATTTTAATTTAC+AGG - chr8.4:27155548-27155567 None:intergenic 25.0%
AATGCTGTTGAATCTATCAA+GGG + chr8.4:27154145-27154164 MS.gene28568:CDS 30.0%
AATTGTTTAATAGGGAGGAA+AGG + chr8.4:27155869-27155888 MS.gene28568:intron 30.0%
AATTTGTACCAAGATGGATA+GGG - chr8.4:27155916-27155935 None:intergenic 30.0%
ACAGAAGCAAGATTATAAGA+TGG + chr8.4:27154561-27154580 MS.gene28568:intron 30.0%
AGAATGTGACACATTATAAC+AGG - chr8.4:27155465-27155484 None:intergenic 30.0%
AGAGTTTCAATAGAGAAAGT+AGG + chr8.4:27155662-27155681 MS.gene28568:intron 30.0%
ATAACTATAACCAGTCATAG+GGG + chr8.4:27156198-27156217 MS.gene28568:intron 30.0%
ATTGAGATCCAAAACATCTT+TGG + chr8.4:27156887-27156906 MS.gene28568:intron 30.0%
ATTGTTTAATAGGGAGGAAA+GGG + chr8.4:27155870-27155889 MS.gene28568:intron 30.0%
ATTTCATGCTGAATTGATTG+TGG - chr8.4:27156774-27156793 None:intergenic 30.0%
CAGGCCTGTAAATTAAAATT+AGG + chr8.4:27155541-27155560 MS.gene28568:intron 30.0%
CATGTATGTTTCATACACAA+AGG - chr8.4:27156862-27156881 None:intergenic 30.0%
CCAAATAAAAGATACACACT+AGG - chr8.4:27154339-27154358 None:intergenic 30.0%
CTGGTGTGAATTGTTTAATA+GGG + chr8.4:27155861-27155880 MS.gene28568:intron 30.0%
GAAATGGTAAAGGAAGAAAA+AGG - chr8.4:27157057-27157076 None:intergenic 30.0%
GAAGGAGTCTATTCATAATA+AGG + chr8.4:27156604-27156623 MS.gene28568:intron 30.0%
GATAACTATAACCAGTCATA+GGG + chr8.4:27156197-27156216 MS.gene28568:intron 30.0%
GTCAAAGTGTAAATGGAATT+AGG + chr8.4:27156815-27156834 MS.gene28568:intron 30.0%
TAAAATAGTCATTCACAAGG+TGG - chr8.4:27155255-27155274 None:intergenic 30.0%
TGATAACTATAACCAGTCAT+AGG + chr8.4:27156196-27156215 MS.gene28568:intron 30.0%
TTACAATTCGGTACTTAAGA+AGG - chr8.4:27156012-27156031 None:intergenic 30.0%
TTCCAAAACTAAAGTCTTGA+AGG - chr8.4:27155100-27155119 None:intergenic 30.0%
TTCTTTAGTATCTCATCTCA+TGG + chr8.4:27154731-27154750 MS.gene28568:intron 30.0%
TTTATTTCATTCATTGCCTG+TGG + chr8.4:27156415-27156434 MS.gene28568:intron 30.0%
TTTGTCAATTTGTACCAAGA+TGG - chr8.4:27155922-27155941 None:intergenic 30.0%
! AATAAAAAACTGACTCCCAT+TGG - chr8.4:27153864-27153883 None:intergenic 30.0%
! CATAGAACTTTTATGCTACT+AGG + chr8.4:27155796-27155815 MS.gene28568:intron 30.0%
! CCTAGTGTGTATCTTTTATT+TGG + chr8.4:27154336-27154355 MS.gene28568:intron 30.0%
! CTTTGGAAATGAACACTATA+AGG + chr8.4:27154168-27154187 MS.gene28568:CDS 30.0%
! GTCATAATCCAAAGATGTTT+TGG - chr8.4:27156898-27156917 None:intergenic 30.0%
! GTCATCATTTTATGTGACTA+GGG + chr8.4:27154842-27154861 MS.gene28568:intron 30.0%
! TGTCATCATTTTATGTGACT+AGG + chr8.4:27154841-27154860 MS.gene28568:intron 30.0%
!! TTTTTGGTCTGCTTAATTTC+AGG + chr8.4:27156289-27156308 MS.gene28568:intron 30.0%
AACCAATCATGTGTGCAATT+TGG - chr8.4:27155166-27155185 None:intergenic 35.0%
AACTACACAACTAAAGCTTG+TGG - chr8.4:27154940-27154959 None:intergenic 35.0%
AATAGTCACCAACCATCATT+TGG - chr8.4:27156380-27156399 None:intergenic 35.0%
ACAAAAAGTTTAAGGGGAAG+GGG + chr8.4:27155937-27155956 MS.gene28568:intron 35.0%
ACAAAACAATGAAAGGGAGA+GGG - chr8.4:27156681-27156700 None:intergenic 35.0%
ACCAATCATGTGTGCAATTT+GGG - chr8.4:27155165-27155184 None:intergenic 35.0%
ATCAATTATTGAAAGTCGGC+TGG - chr8.4:27155034-27155053 None:intergenic 35.0%
ATGGATTTCTTGAAATGGAG+AGG - chr8.4:27153677-27153696 None:intergenic 35.0%
ATTGTGGAAATGATGTGACT+TGG - chr8.4:27156758-27156777 None:intergenic 35.0%
ATTTCGACCTAAAACACGAA+CGG + chr8.4:27153801-27153820 MS.gene28568:CDS 35.0%
CAATTTGTACCAAGATGGAT+AGG - chr8.4:27155917-27155936 None:intergenic 35.0%
CAGAGTTCCCATAAATTTGA+TGG - chr8.4:27156088-27156107 None:intergenic 35.0%
CATACAGTCATATTGTATGC+TGG + chr8.4:27155842-27155861 MS.gene28568:intron 35.0%
GAACAAGACAGCATTTGAAA+TGG - chr8.4:27157073-27157092 None:intergenic 35.0%
GAATGCTGTTGAATCTATCA+AGG + chr8.4:27154144-27154163 MS.gene28568:CDS 35.0%
GACAAAAAGTTTAAGGGGAA+GGG + chr8.4:27155936-27155955 MS.gene28568:intron 35.0%
GCATACAATATGACTGTATG+AGG - chr8.4:27155842-27155861 None:intergenic 35.0%
GCTGGTGTGAATTGTTTAAT+AGG + chr8.4:27155860-27155879 MS.gene28568:intron 35.0%
GGTTATAGTTATCAATTCCC+TGG - chr8.4:27156190-27156209 None:intergenic 35.0%
GTATATGTTACTCAATGACC+TGG + chr8.4:27156313-27156332 MS.gene28568:CDS 35.0%
GTGTGAATTGTTTAATAGGG+AGG + chr8.4:27155864-27155883 MS.gene28568:intron 35.0%
TGACAAAAAGTTTAAGGGGA+AGG + chr8.4:27155935-27155954 MS.gene28568:intron 35.0%
TGGATTTCTTGAAATGGAGA+GGG - chr8.4:27153676-27153695 None:intergenic 35.0%
TGTAGTTAGAGGCTTAAGAA+TGG + chr8.4:27154953-27154972 MS.gene28568:intron 35.0%
TGTGATACTTACTGAACTGT+TGG - chr8.4:27154820-27154839 None:intergenic 35.0%
TTAAAATTAGGTGACCTCAG+TGG + chr8.4:27155553-27155572 MS.gene28568:CDS 35.0%
TTATGTCGAAGTACACTCTT+GGG - chr8.4:27153529-27153548 None:intergenic 35.0%
TTCTGTAAGAAAAAGGGGAA+GGG - chr8.4:27156159-27156178 None:intergenic 35.0%
TTGAGTGTAATGAACTTCCT+GGG + chr8.4:27156517-27156536 MS.gene28568:intron 35.0%
TTTGAGTGTAATGAACTTCC+TGG + chr8.4:27156516-27156535 MS.gene28568:intron 35.0%
! AAACATATCTTTGGCTTACC+AGG + chr8.4:27156578-27156597 MS.gene28568:intron 35.0%
! AACATATCTTTGGCTTACCA+GGG + chr8.4:27156579-27156598 MS.gene28568:intron 35.0%
! ACTATTTCTTGTCTCGACAT+TGG - chr8.4:27156631-27156650 None:intergenic 35.0%
! AGCTTTAGTTGTGTAGTTAG+AGG + chr8.4:27154942-27154961 MS.gene28568:intron 35.0%
! ATGGTGATACTTTTGCTGAT+TGG + chr8.4:27154077-27154096 MS.gene28568:CDS 35.0%
! ATGTTGTGATTGCTGATTGT+GGG + chr8.4:27154008-27154027 MS.gene28568:CDS 35.0%
! ATTTTATCCATGGCGAATAC+CGG + chr8.4:27153830-27153849 MS.gene28568:CDS 35.0%
! CTATTTCTTGTCTCGACATT+GGG - chr8.4:27156630-27156649 None:intergenic 35.0%
! GACAGCATTTGAAATGGTAA+AGG - chr8.4:27157067-27157086 None:intergenic 35.0%
! GGAAGATGGATTTCTTGAAA+TGG - chr8.4:27153682-27153701 None:intergenic 35.0%
!! TGAAAAGCATTTATGACCAC+AGG - chr8.4:27156434-27156453 None:intergenic 35.0%
!! TGCCTTCAAGACTTTAGTTT+TGG + chr8.4:27155095-27155114 MS.gene28568:intron 35.0%
!! TGTTTACTGCTTTTGGTTAC+AGG + chr8.4:27157116-27157135 MS.gene28568:intron 35.0%
!!! AGTTTTTTATTACGACGACG+AGG + chr8.4:27153873-27153892 MS.gene28568:CDS 35.0%
!!! TTGATGGTTTTGACTTTTGG+AGG - chr8.4:27156072-27156091 None:intergenic 35.0%
AAGCAGACCTACTCAGAAAT+GGG - chr8.4:27155390-27155409 None:intergenic 40.0%
AATCAAGTAAAGCTCCACTG+AGG - chr8.4:27155570-27155589 None:intergenic 40.0%
AATGCATCAGCATACCACAA+AGG - chr8.4:27154529-27154548 None:intergenic 40.0%
ACCCAAATTGCACACATGAT+TGG + chr8.4:27155161-27155180 MS.gene28568:intron 40.0%
ACCTAAAACACGAACGGAAA+GGG + chr8.4:27153807-27153826 MS.gene28568:CDS 40.0%
AGACTAACTAAAACCGACCT+TGG - chr8.4:27154651-27154670 None:intergenic 40.0%
AGGAAAGGGTAAGGAAAAGA+AGG + chr8.4:27155884-27155903 MS.gene28568:intron 40.0%
AGTTATCAATTCCCTGGTCT+GGG - chr8.4:27156184-27156203 None:intergenic 40.0%
ATAGTCATTCACAAGGTGGT+AGG - chr8.4:27155251-27155270 None:intergenic 40.0%
CAGTGGAGCTTTACTTGATT+CGG + chr8.4:27155570-27155589 MS.gene28568:CDS 40.0%
CATGATATATCCCCTATGAC+TGG - chr8.4:27156211-27156230 None:intergenic 40.0%
CGTTTGTAAATCGTCCTGTT+CGG + chr8.4:27156719-27156738 MS.gene28568:intron 40.0%
CTTATGTCGAAGTACACTCT+TGG - chr8.4:27153530-27153549 None:intergenic 40.0%
GACAAAACAATGAAAGGGAG+AGG - chr8.4:27156682-27156701 None:intergenic 40.0%
GACTTGTCTCGTCAACTATT+AGG + chr8.4:27154873-27154892 MS.gene28568:intron 40.0%
GCGTTATTTGGACATGTGTT+GGG + chr8.4:27154609-27154628 MS.gene28568:CDS 40.0%
GGAAAGGGTAAGGAAAAGAA+GGG + chr8.4:27155885-27155904 MS.gene28568:intron 40.0%
GGGTTCTTGATAAAGCTGTA+AGG + chr8.4:27156537-27156556 MS.gene28568:intron 40.0%
GGTTGCTGATAGACATGATA+AGG + chr8.4:27157137-27157156 MS.gene28568:intron 40.0%
GTGTACTTCGACATAAGCAT+CGG + chr8.4:27153533-27153552 MS.gene28568:CDS 40.0%
GTTCTGTAAGAAAAAGGGGA+AGG - chr8.4:27156160-27156179 None:intergenic 40.0%
GTTGAATCTATCAAGGGCTT+TGG + chr8.4:27154151-27154170 MS.gene28568:CDS 40.0%
GTTTGTAAATCGTCCTGTTC+GGG + chr8.4:27156720-27156739 MS.gene28568:intron 40.0%
TAAGAAAAAGGGGAAGGGAA+TGG - chr8.4:27156154-27156173 None:intergenic 40.0%
TAGGTCTGCATGATTCAACA+TGG + chr8.4:27155418-27155437 MS.gene28568:intron 40.0%
TAGGTCTGCTTCATTCAACT+AGG + chr8.4:27155399-27155418 MS.gene28568:intron 40.0%
TAGTTATCAATTCCCTGGTC+TGG - chr8.4:27156185-27156204 None:intergenic 40.0%
TCTATTGAAAGATGCCAACC+TGG - chr8.4:27155645-27155664 None:intergenic 40.0%
TGAAAGGGATTGGAGTTGTT+AGG + chr8.4:27153939-27153958 MS.gene28568:CDS 40.0%
TGCGTTATTTGGACATGTGT+TGG + chr8.4:27154608-27154627 MS.gene28568:CDS 40.0%
TGGGGGTTCTGTAAGAAAAA+GGG - chr8.4:27156165-27156184 None:intergenic 40.0%
TGTATTACTGACCTTCTTCC+TGG - chr8.4:27157034-27157053 None:intergenic 40.0%
TGTTGATCTTGATACCAAGC+CGG + chr8.4:27154102-27154121 MS.gene28568:CDS 40.0%
TGTTTGGGAAGGTTGTGAAA+GGG + chr8.4:27153924-27153943 MS.gene28568:CDS 40.0%
TTAATAGGGAGGAAAGGGTA+AGG + chr8.4:27155875-27155894 MS.gene28568:intron 40.0%
TTAGAGTTGGAGCCAAATGA+TGG + chr8.4:27156365-27156384 MS.gene28568:CDS 40.0%
! AAAAAGAGTACGCAATTGCC+AGG + chr8.4:27157013-27157032 MS.gene28568:CDS 40.0%
! ACGGAAAGGGATTTTATCCA+TGG + chr8.4:27153820-27153839 MS.gene28568:CDS 40.0%
! GATGTTGTGATTGCTGATTG+TGG + chr8.4:27154007-27154026 MS.gene28568:CDS 40.0%
! GCAGAGAGATCGGAAATTTT+CGG - chr8.4:27153618-27153637 None:intergenic 40.0%
! TACAGCTTTATCAAGAACCC+AGG - chr8.4:27156537-27156556 None:intergenic 40.0%
! TGTTGTGATTGCTGATTGTG+GGG + chr8.4:27154009-27154028 MS.gene28568:CDS 40.0%
!! CTTCAAGAGAGCATTAGAGT+TGG + chr8.4:27156352-27156371 MS.gene28568:CDS 40.0%
!! GGCTATCAAAAAGTATCGCA+AGG + chr8.4:27154582-27154601 MS.gene28568:CDS 40.0%
!! GTTCTGTGCTGTTCTGTTTT+TGG + chr8.4:27154680-27154699 MS.gene28568:intron 40.0%
!!! GGGAATATAGTGGCTAGTTT+TGG + chr8.4:27154487-27154506 MS.gene28568:intron 40.0%
!!! TCTGTTTTTGGTTGTTTCCG+TGG + chr8.4:27154692-27154711 MS.gene28568:intron 40.0%
AAAGGCTTCATGATCCAAGG+CGG + chr8.4:27153713-27153732 MS.gene28568:CDS 45.0%
AATACCGGTCCAAACACCAA+TGG + chr8.4:27153845-27153864 MS.gene28568:CDS 45.0%
AATTTCCGATCTCTCTGCAC+CGG + chr8.4:27153620-27153639 MS.gene28568:CDS 45.0%
ACATGCTTCCCATCCAAATG+CGG - chr8.4:27153902-27153921 None:intergenic 45.0%
AGCAAAGCAGTAACTAGCCA+CGG - chr8.4:27154712-27154731 None:intergenic 45.0%
AGTTGGAGCCAAATGATGGT+TGG + chr8.4:27156369-27156388 MS.gene28568:intron 45.0%
ATACCGGTCCAAACACCAAT+GGG + chr8.4:27153846-27153865 MS.gene28568:CDS 45.0%
ATTGTGGGGAGATTGCTGAA+GGG + chr8.4:27154023-27154042 MS.gene28568:CDS 45.0%
CATACCTTGCTCTGTTCTTC+AGG + chr8.4:27156982-27157001 MS.gene28568:intron 45.0%
CTCTTAGGGCCAAACTAACA+AGG + chr8.4:27155311-27155330 MS.gene28568:intron 45.0%
CTGGGGGTTCTGTAAGAAAA+AGG - chr8.4:27156166-27156185 None:intergenic 45.0%
GAAGCAGACCTACTCAGAAA+TGG - chr8.4:27155391-27155410 None:intergenic 45.0%
GACCTAAAACACGAACGGAA+AGG + chr8.4:27153806-27153825 MS.gene28568:CDS 45.0%
GCTAAAGCTCTGTTTCGCAA+AGG + chr8.4:27155619-27155638 MS.gene28568:CDS 45.0%
GGGGGTTCTGTAAGAAAAAG+GGG - chr8.4:27156164-27156183 None:intergenic 45.0%
GGGTAAAACCCTATCCATCT+TGG + chr8.4:27155905-27155924 MS.gene28568:intron 45.0%
GTCAAAGGCTTCATGATCCA+AGG + chr8.4:27153710-27153729 MS.gene28568:CDS 45.0%
GTGTTTGGGAAGGTTGTGAA+AGG + chr8.4:27153923-27153942 MS.gene28568:CDS 45.0%
GTTATCAATTCCCTGGTCTG+GGG - chr8.4:27156183-27156202 None:intergenic 45.0%
GTTGTTAGGTCTGTTGAGCT+TGG + chr8.4:27153953-27153972 MS.gene28568:CDS 45.0%
TAGGGCCAAACTAACAAGGT+TGG + chr8.4:27155315-27155334 MS.gene28568:intron 45.0%
TCATGAAGCCTTTGACGACA+CGG - chr8.4:27153706-27153725 None:intergenic 45.0%
TCGAAGTACACTCTTGGGTT+CGG - chr8.4:27153524-27153543 None:intergenic 45.0%
TCGCAAGGCTTTGCGTTATT+TGG + chr8.4:27154597-27154616 MS.gene28568:CDS 45.0%
TCTCTTGAAGCTATCCAGAG+CGG - chr8.4:27156342-27156361 None:intergenic 45.0%
TGAATAGACTCCTTCAACCC+TGG - chr8.4:27156599-27156618 None:intergenic 45.0%
TTATAACACTGGGGTCCTGA+GGG + chr8.4:27156485-27156504 MS.gene28568:intron 45.0%
TTATCAATTCCCTGGTCTGG+GGG - chr8.4:27156182-27156201 None:intergenic 45.0%
TTTGGACATGTGTTGGGAGA+AGG + chr8.4:27154615-27154634 MS.gene28568:CDS 45.0%
! AACTGACTCCCATTGGTGTT+TGG - chr8.4:27153857-27153876 None:intergenic 45.0%
! ATGGGAAGCATGTGGTGTTT+GGG + chr8.4:27153909-27153928 MS.gene28568:CDS 45.0%
! CGGAAATTTTCGGCGGTTTT+GGG - chr8.4:27153608-27153627 None:intergenic 45.0%
! GAGAGATCGGAAATTTTCGG+CGG - chr8.4:27153615-27153634 None:intergenic 45.0%
! GAGGATTTGTTTACCCGAAC+AGG - chr8.4:27156736-27156755 None:intergenic 45.0%
! GCCAAACTAACAAGGTTGGT+GGG + chr8.4:27155319-27155338 MS.gene28568:intron 45.0%
! GGCTTGGTATCAAGATCAAC+AGG - chr8.4:27154103-27154122 None:intergenic 45.0%
! GTGGAAATGATGTGACTTGG+AGG - chr8.4:27156755-27156774 None:intergenic 45.0%
! TCCCTTTCCGTTCGTGTTTT+AGG - chr8.4:27153811-27153830 None:intergenic 45.0%
! TCGGAAATTTTCGGCGGTTT+TGG - chr8.4:27153609-27153628 None:intergenic 45.0%
!! CAAACTAACAAGGTTGGTGG+GGG + chr8.4:27155321-27155340 MS.gene28568:intron 45.0%
!! CAGAGAAGAGCACTGCTTTA+AGG + chr8.4:27154772-27154791 MS.gene28568:intron 45.0%
!! CCAAACTAACAAGGTTGGTG+GGG + chr8.4:27155320-27155339 MS.gene28568:intron 45.0%
!! TACTTCGACATAAGCATCGG+CGG + chr8.4:27153536-27153555 MS.gene28568:CDS 45.0%
ACCTTGCTCTGTTCTTCAGG+AGG + chr8.4:27156985-27157004 MS.gene28568:intron 50.0%
ACTCAAAAACAGCCTCCCTC+AGG - chr8.4:27156503-27156522 None:intergenic 50.0%
ATCCACCATTCAAGCTCCTC+CGG - chr8.4:27154124-27154143 None:intergenic 50.0%
ATCTTCCACCGTGTCGTCAA+AGG + chr8.4:27153695-27153714 MS.gene28568:CDS 50.0%
ATTGCTGAAGGGGAGGATGA+AGG + chr8.4:27154034-27154053 MS.gene28568:CDS 50.0%
CCCCACCAACCTTGTTAGTT+TGG - chr8.4:27155323-27155342 None:intergenic 50.0%
CCTTGCTCTGTTCTTCAGGA+GGG + chr8.4:27156986-27157005 MS.gene28568:intron 50.0%
CTCACTGCCCATTTCTGAGT+AGG + chr8.4:27155380-27155399 MS.gene28568:intron 50.0%
CTTATAACACTGGGGTCCTG+AGG + chr8.4:27156484-27156503 MS.gene28568:intron 50.0%
CTTGAAATGGAGAGGGACGT+TGG - chr8.4:27153669-27153688 None:intergenic 50.0%
GAAGCATGTGGTGTTTGGGA+AGG + chr8.4:27153913-27153932 MS.gene28568:CDS 50.0%
GACATGTGTTGGGAGAAGGA+TGG + chr8.4:27154619-27154638 MS.gene28568:CDS 50.0%
GATTGTGGGGAGATTGCTGA+AGG + chr8.4:27154022-27154041 MS.gene28568:CDS 50.0%
GCAATCACAACATCCTGCTC+CGG - chr8.4:27154001-27154020 None:intergenic 50.0%
GGCCAAACTAACAAGGTTGG+TGG + chr8.4:27155318-27155337 MS.gene28568:intron 50.0%
GGGAAGGTTGTGAAAGGGAT+TGG + chr8.4:27153929-27153948 MS.gene28568:CDS 50.0%
GTACGCAATTGCCAGGAAGA+AGG + chr8.4:27157020-27157039 MS.gene28568:CDS 50.0%
GTGCTCTTCTCTGCAAAGTC+AGG - chr8.4:27154765-27154784 None:intergenic 50.0%
TAGGTCTGTTGAGCTTGGTC+CGG + chr8.4:27153958-27153977 MS.gene28568:CDS 50.0%
TCGGACTTTGCAATGCACGA+TGG + chr8.4:27155589-27155608 MS.gene28568:CDS 50.0%
TGATCTTGATACCAAGCCGG+AGG + chr8.4:27154105-27154124 MS.gene28568:CDS 50.0%
TTGCTGAAGGGGAGGATGAA+GGG + chr8.4:27154035-27154054 MS.gene28568:CDS 50.0%
TTGTGGGGAGATTGCTGAAG+GGG + chr8.4:27154024-27154043 MS.gene28568:CDS 50.0%
TTTGACGACACGGTGGAAGA+TGG - chr8.4:27153696-27153715 None:intergenic 50.0%
! ACTCCCATTGGTGTTTGGAC+CGG - chr8.4:27153852-27153871 None:intergenic 50.0%
! CTTTGGCTTACCAGGGTTGA+AGG + chr8.4:27156586-27156605 MS.gene28568:intron 50.0%
! GATGGGAAGCATGTGGTGTT+TGG + chr8.4:27153908-27153927 MS.gene28568:CDS 50.0%
! GCATTTGGATGGGAAGCATG+TGG + chr8.4:27153901-27153920 MS.gene28568:CDS 50.0%
! TGTCCTGTGCCTGTTTTCTC+CGG + chr8.4:27155222-27155241 MS.gene28568:intron 50.0%
!! AGGATGGTGTTGACCAAGGT+CGG + chr8.4:27154635-27154654 MS.gene28568:intron 50.0%
!! GAGAAGGATGGTGTTGACCA+AGG + chr8.4:27154631-27154650 MS.gene28568:CDS 50.0%
AGCTCTGTTTCGCAAAGGCC+AGG + chr8.4:27155624-27155643 MS.gene28568:CDS 55.0%
CCCTCCTGAAGAACAGAGCA+AGG - chr8.4:27156989-27157008 None:intergenic 55.0%
CTGTTGAGCTTGGTCCGGTT+GGG + chr8.4:27153963-27153982 MS.gene28568:CDS 55.0%
CTGTTTCGCAAAGGCCAGGT+TGG + chr8.4:27155628-27155647 MS.gene28568:intron 55.0%
CTTACAGAACCCCCAGACCA+GGG + chr8.4:27156170-27156189 MS.gene28568:intron 55.0%
GGTAGATCGTTCTCCCCAAC+CGG - chr8.4:27153980-27153999 None:intergenic 55.0%
GGTTGGGGAGAACGATCTAC+CGG + chr8.4:27153979-27153998 MS.gene28568:CDS 55.0%
GTTTGGACCGGTATTCGCCA+TGG - chr8.4:27153840-27153859 None:intergenic 55.0%
TCTGTTGAGCTTGGTCCGGT+TGG + chr8.4:27153962-27153981 MS.gene28568:CDS 55.0%
TCTTACAGAACCCCCAGACC+AGG + chr8.4:27156169-27156188 MS.gene28568:intron 55.0%
TGAAGCCTTTGACGACACGG+TGG - chr8.4:27153703-27153722 None:intergenic 55.0%
TGCTGAAGGGGAGGATGAAG+GGG + chr8.4:27154036-27154055 MS.gene28568:CDS 55.0%
TGTTGAGCTTGGTCCGGTTG+GGG + chr8.4:27153964-27153983 MS.gene28568:CDS 55.0%
TTCACAAGGTGGTAGGCCAC+CGG - chr8.4:27155244-27155263 None:intergenic 55.0%
TTTCGCCGGTGCAGAGAGAT+CGG - chr8.4:27153628-27153647 None:intergenic 55.0%
! TCTCTCTGCACCGGCGAAAA+AGG + chr8.4:27153629-27153648 MS.gene28568:CDS 55.0%
! TGCACCGGCGAAAAAGGCAT+CGG + chr8.4:27153635-27153654 MS.gene28568:CDS 55.0%
!! TGGACCGATGCCTTTTTCGC+CGG - chr8.4:27153642-27153661 None:intergenic 55.0%
!!! GGCGGTTTTGGGAACGACAT+CGG - chr8.4:27153597-27153616 None:intergenic 55.0%
ACCGGCGGCGAGTCAATCTA+CGG + chr8.4:27153758-27153777 MS.gene28568:CDS 60.0%
ACGAGGACGCCGCATTTGGA+TGG + chr8.4:27153890-27153909 MS.gene28568:CDS 60.0%
AGCCGGAGGAGCTTGAATGG+TGG + chr8.4:27154119-27154138 MS.gene28568:CDS 60.0%
AGCTATCCAGAGCGGCATCC+AGG - chr8.4:27156334-27156353 None:intergenic 60.0%
CAATGACCTGGATGCCGCTC+TGG + chr8.4:27156325-27156344 MS.gene28568:CDS 60.0%
CCAAGCCGGAGGAGCTTGAA+TGG + chr8.4:27154116-27154135 MS.gene28568:CDS 60.0%
CCACCGGAGAAAACAGGCAC+AGG - chr8.4:27155228-27155247 None:intergenic 60.0%
CCATTCAAGCTCCTCCGGCT+TGG - chr8.4:27154119-27154138 None:intergenic 60.0%
CGAGGACGCCGCATTTGGAT+GGG + chr8.4:27153891-27153910 MS.gene28568:CDS 60.0%
GGAGAACGATCTACCGGAGC+AGG + chr8.4:27153985-27154004 MS.gene28568:CDS 60.0%
GGTAGGCCACCGGAGAAAAC+AGG - chr8.4:27155234-27155253 None:intergenic 60.0%
TAACACTGGGGTCCTGAGGG+AGG + chr8.4:27156488-27156507 MS.gene28568:intron 60.0%
TGGAGAGGGACGTTGGTGTG+TGG - chr8.4:27153662-27153681 None:intergenic 60.0%
TGGGGAGATTGCTGAAGGGG+AGG + chr8.4:27154027-27154046 MS.gene28568:CDS 60.0%
! CCTGTGCCTGTTTTCTCCGG+TGG + chr8.4:27155225-27155244 MS.gene28568:intron 60.0%
!! AAGCATCGGCGGTGAACTCG+AGG + chr8.4:27153547-27153566 MS.gene28568:CDS 60.0%
!! ACCGTAGATTGACTCGCCGC+CGG - chr8.4:27153762-27153781 None:intergenic 60.0%
!! AGCATCGGCGGTGAACTCGA+GGG + chr8.4:27153548-27153567 MS.gene28568:CDS 60.0%
AGGCGGAGATGTCACCGCCT+TGG - chr8.4:27153730-27153749 None:intergenic 65.0%
ATCTCCGCCTCCGACGGAAC+CGG + chr8.4:27153740-27153759 MS.gene28568:CDS 65.0%
GACGACGAGGACGCCGCATT+TGG + chr8.4:27153886-27153905 MS.gene28568:CDS 65.0%
GGTGACATCTCCGCCTCCGA+CGG + chr8.4:27153734-27153753 MS.gene28568:CDS 65.0%
!! TGACTCGCCGCCGGTTCCGT+CGG - chr8.4:27153753-27153772 None:intergenic 70.0%
TCCGCCTCCGACGGAACCGG+CGG + chr8.4:27153743-27153762 MS.gene28568:CDS 75.0%
!!! CTCGCCGCCGGTTCCGTCGG+AGG - chr8.4:27153750-27153769 None:intergenic 80.0%
!!! GCCGCCGGTTCCGTCGGAGG+CGG - chr8.4:27153747-27153766 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 27153518 27157191 27153518 ID=MS.gene28568
chr8.4 mRNA 27153518 27157191 27153518 ID=MS.gene28568.t1;Parent=MS.gene28568
chr8.4 exon 27153518 27154189 27153518 ID=MS.gene28568.t1.exon1;Parent=MS.gene28568.t1
chr8.4 CDS 27153518 27154189 27153518 ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1
chr8.4 exon 27154565 27154652 27154565 ID=MS.gene28568.t1.exon2;Parent=MS.gene28568.t1
chr8.4 CDS 27154565 27154652 27154565 ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1
chr8.4 exon 27154775 27154827 27154775 ID=MS.gene28568.t1.exon3;Parent=MS.gene28568.t1
chr8.4 CDS 27154775 27154827 27154775 ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1
chr8.4 exon 27155544 27155645 27155544 ID=MS.gene28568.t1.exon4;Parent=MS.gene28568.t1
chr8.4 CDS 27155544 27155645 27155544 ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1
chr8.4 exon 27156311 27156386 27156311 ID=MS.gene28568.t1.exon5;Parent=MS.gene28568.t1
chr8.4 CDS 27156311 27156386 27156311 ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1
chr8.4 exon 27157004 27157041 27157004 ID=MS.gene28568.t1.exon6;Parent=MS.gene28568.t1
chr8.4 CDS 27157004 27157041 27157004 ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1
chr8.4 exon 27157138 27157191 27157138 ID=MS.gene28568.t1.exon7;Parent=MS.gene28568.t1
chr8.4 CDS 27157138 27157191 27157138 ID=cds.MS.gene28568.t1;Parent=MS.gene28568.t1
Gene Sequence

>MS.gene28568

ATGCCGAACCCAAGAGTGTACTTCGACATAAGCATCGGCGGTGAACTCGAGGGTAGAATCGTAATCGAACTCTTCGCCGATGTCGTTCCCAAAACCGCCGAAAATTTCCGATCTCTCTGCACCGGCGAAAAAGGCATCGGTCCACACACCAACGTCCCTCTCCATTTCAAGAAATCCATCTTCCACCGTGTCGTCAAAGGCTTCATGATCCAAGGCGGTGACATCTCCGCCTCCGACGGAACCGGCGGCGAGTCAATCTACGGTCCAAATTTCGAAGACGAAAATTTCGACCTAAAACACGAACGGAAAGGGATTTTATCCATGGCGAATACCGGTCCAAACACCAATGGGAGTCAGTTTTTTATTACGACGACGAGGACGCCGCATTTGGATGGGAAGCATGTGGTGTTTGGGAAGGTTGTGAAAGGGATTGGAGTTGTTAGGTCTGTTGAGCTTGGTCCGGTTGGGGAGAACGATCTACCGGAGCAGGATGTTGTGATTGCTGATTGTGGGGAGATTGCTGAAGGGGAGGATGAAGGGGTTATTAACTTTTTTAAAGATGGTGATACTTTTGCTGATTGGCCTGTTGATCTTGATACCAAGCCGGAGGAGCTTGAATGGTGGATGAATGCTGTTGAATCTATCAAGGGCTTTGGAAATGAACACTATAAGGTGAATTTTTGTTCTTTGGATGCATTATACTCTTTGCATTTTAGGTTTTTAAATCGAAATAGAATAGGGTTTACTGAATTCAGATTTTGTTGATGCATATCTTTGTTAAAGGTTCTCTCCTCATTGTTGTTTTCGAATATTGAATCCCTAGTGTGTATCTTTTATTTGGTTGTTTTCGCATATAGAATTGTTTTTCTCCGCTACTTACTTTTACTTATAAATGTCGTATTTTATCATCAGTGATGTATTTGAATCTTGATTTAATAACCATGTAAGCTTAATGTTTTAGTTTTATTTGGGAATATAGTGGCTAGTTTTGGTCATTCTTTATGATTACCTTTGTGGTATGCTGATGCATTGTCTTTTGTGAAACAGAAGCAAGATTATAAGATGGCTATCAAAAAGTATCGCAAGGCTTTGCGTTATTTGGACATGTGTTGGGAGAAGGATGGTGTTGACCAAGGTCGGTTTTAGTTAGTCTGTTGCTCATGTTCTGTGCTGTTCTGTTTTTGGTTGTTTCCGTGGCTAGTTACTGCTTTGCTTCTTTAGTATCTCATCTCATGGTTTGTTTTCCTGACTTTGCAGAGAAGAGCACTGCTTTAAGGAAGATAAAATCTCAAATCTTTACCAACAGTTCAGTAAGTATCACATTGTCATCATTTTATGTGACTAGGGCTAGAGCAGACTTGTCTCGTCAACTATTAGGAGTTGAGATCAATCATTGTTTGTTGTAATGTACTAACTTTACCACAAGCTTTAGTTGTGTAGTTAGAGGCTTAAGAATGGTTTTATGCCTAAAACTCTTCTCATGATTTTACTTTTACTTTTACAGAATCATTAACCAGCCGACTTTCAATAATTGATTGCTCGAATTGAGCATCATGCTATAAGTATTTATAATTAGCTGCCTTCAAGACTTTAGTTTTGGAAATTGGGACATATGAATGTCTGTTTGTTTTAATCTAAAATAAACCCAAATTGCACACATGATTGGTTCATGTTTTGTAAATTTAGTTGGTGTTTCTGTGTTCTTGTCCTGTGCCTGTTTTCTCCGGTGGCCTACCACCTTGTGAATGACTATTTTACTAAAGATACCCATGTTTTCTTTACAAATACTTACTCTCTTAGGGCCAAACTAACAAGGTTGGTGGGGGTGATAGTCTATTATATCGTCATGATACAACATATTACTCACTGCCCATTTCTGAGTAGGTCTGCTTCATTCAACTAGGTCTGCATGATTCAACATGGATGCTTTTACATTTTTTCTTGCCTGTTATAATGTGTCACATTCTGTAGCAATCTTACCTTCTTCAATAAGTTCACTTAAACTAAATGTGAATTAAATTTTCAGGCCTGTAAATTAAAATTAGGTGACCTCAGTGGAGCTTTACTTGATTCGGACTTTGCAATGCACGATGGAGATAATGCTAAAGCTCTGTTTCGCAAAGGCCAGGTTGGCATCTTTCAATAGAGTTTCAATAGAGAAAGTAGGATGATGATGACCGTGTTTAACAATGTCATCTATCTGTCAGCTCTTTTATTCTGTCAGTCTGAGTCTACTATAATTCTGTTCTGTTTATGCTAATTTTTTTATTAGTTCTATCATAGAACTTTTATGCTACTAGGTTTTAGACATGTCTTTGCTTCCTCATACAGTCATATTGTATGCTGGTGTGAATTGTTTAATAGGGAGGAAAGGGTAAGGAAAAGAAGGGTAAAACCCTATCCATCTTGGTACAAATTGACAAAAAGTTTAAGGGGAAGGGGATTTAGATTTAGTTTAATTTTGAATGTATAAAATAAATTTACACTTTTTCCTTCTTAAGTACCGAATTGTAATTTGCTACTTTAATAAATGAGTAAAATACATTATTTTCCTCCAAAAGTCAAAACCATCAAATTTATGGGAACTCTGAAAATGTATAAGAGAAGTATTTTAAAGTATTTATGAAAAATCTCCATTCCCTTCCCCTTTTTCTTACAGAACCCCCAGACCAGGGAATTGATAACTATAACCAGTCATAGGGGATATATCATGCATGCACTTTGCAAGCTGAACCATAGCCATGTATTATATATAGTAATTTGCTATTTGTTTTTTGGTCTGCTTAATTTCAGGTGTATATGTTACTCAATGACCTGGATGCCGCTCTGGATAGCTTCAAGAGAGCATTAGAGTTGGAGCCAAATGATGGTTGGTGACTATTTAAATTTCACGAATCTTTATTTCATTCATTGCCTGTGGTCATAAATGCTTTTCAGAAATTTTCTTTCTTAAAGTCAATTACTTTCTTATAACACTGGGGTCCTGAGGGAGGCTGTTTTTGAGTGTAATGAACTTCCTGGGTTCTTGATAAAGCTGTAAGGAGATTTTTTTTCATGTAGAAACATATCTTTGGCTTACCAGGGTTGAAGGAGTCTATTCATAATAAGGCCCAATGTCGAGACAAGAAATAGTGTAGTGTTTATTCTAGCTAATAAATTGCCCTCTCCCTTTCATTGTTTTGTCTTTAATCACATTTTCATCGTTTGTAAATCGTCCTGTTCGGGTAAACAAATCCTCCAAGTCACATCATTTCCACAATCAATTCAGCATGAAATCTCTAAATATGATATTAACAAGTCAAAGTGTAAATGGAATTAGGTGCTTTTAAAAACACAATCTTCCTTTGTGTATGAAACATACATGAATATATTGAGATCCAAAACATCTTTGGATTATGACTCTTGAATATTTAAGTTTTACTTGTTTTTCAAAGTTAATTTGATATTTCTGGTAAAGTTTGACACATACCTTGCTCTGTTCTTCAGGAGGGATAAAAAAAGAGTACGCAATTGCCAGGAAGAAGGTCAGTAATACACCTTTTTCTTCCTTTACCATTTCAAATGCTGTCTTGTTCATCGAAATGAATTAAGTTTATTCTGTTTACTGCTTTTGGTTACAGGTTGCTGATAGACATGATAAGGAGAAAAAAGCTTATTCGAAGATGTTCAATTAG

Protein sequence

>MS.gene28568.t1

MPNPRVYFDISIGGELEGRIVIELFADVVPKTAENFRSLCTGEKGIGPHTNVPLHFKKSIFHRVVKGFMIQGGDISASDGTGGESIYGPNFEDENFDLKHERKGILSMANTGPNTNGSQFFITTTRTPHLDGKHVVFGKVVKGIGVVRSVELGPVGENDLPEQDVVIADCGEIAEGEDEGVINFFKDGDTFADWPVDLDTKPEELEWWMNAVESIKGFGNEHYKKQDYKMAIKKYRKALRYLDMCWEKDGVDQEKSTALRKIKSQIFTNSSACKLKLGDLSGALLDSDFAMHDGDNAKALFRKGQVYMLLNDLDAALDSFKRALELEPNDGGIKKEYAIARKKVADRHDKEKKAYSKMFN