Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050134.t1 | XP_003606385.1 | 99.4 | 166 | 1 | 0 | 1 | 166 | 1 | 166 | 8.00E-84 | 319.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050134.t1 | O50003 | 93.4 | 166 | 11 | 0 | 1 | 166 | 1 | 166 | 1.2e-80 | 300.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050134.t1 | B7FH91 | 99.4 | 166 | 1 | 0 | 1 | 166 | 1 | 166 | 5.8e-84 | 319.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene050134 | 0.815681 | 8.16E-52 | -1.69E-46 |
| MS.gene049387 | MS.gene050134 | 0.82897 | 6.69E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene050252 | 0.829812 | 4.17E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene050791 | 0.908561 | 1.49E-81 | -1.69E-46 |
| MS.gene050134 | MS.gene050912 | 0.858688 | 6.94E-63 | -1.69E-46 |
| MS.gene050134 | MS.gene051904 | 0.849122 | 3.96E-60 | -1.69E-46 |
| MS.gene050134 | MS.gene051925 | 0.810244 | 1.27E-50 | -1.69E-46 |
| MS.gene050134 | MS.gene051984 | 0.867544 | 1.27E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene052664 | 0.902708 | 7.35E-79 | -1.69E-46 |
| MS.gene050134 | MS.gene052666 | 0.874202 | 8.12E-68 | -1.69E-46 |
| MS.gene050134 | MS.gene053224 | 0.926658 | 3.46E-91 | -1.69E-46 |
| MS.gene050134 | MS.gene054624 | 0.803729 | 3.03E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene057272 | 0.929109 | 1.11E-92 | -1.69E-46 |
| MS.gene050134 | MS.gene057641 | 0.874668 | 5.64E-68 | -1.69E-46 |
| MS.gene050134 | MS.gene057643 | 0.903261 | 4.16E-79 | -1.69E-46 |
| MS.gene050134 | MS.gene058994 | 0.80258 | 5.24E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene059340 | 0.849337 | 3.45E-60 | -1.69E-46 |
| MS.gene050134 | MS.gene060432 | 0.810585 | 1.07E-50 | -1.69E-46 |
| MS.gene050134 | MS.gene060483 | 0.887601 | 1.24E-72 | -1.69E-46 |
| MS.gene050134 | MS.gene06169 | 0.86838 | 6.81E-66 | -1.69E-46 |
| MS.gene050134 | MS.gene063093 | 0.86514 | 7.33E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene06581 | 0.874961 | 4.48E-68 | -1.69E-46 |
| MS.gene050134 | MS.gene06583 | 0.887363 | 1.52E-72 | -1.69E-46 |
| MS.gene050134 | MS.gene06617 | 0.846162 | 2.58E-59 | -1.69E-46 |
| MS.gene050134 | MS.gene066583 | 0.807666 | 4.52E-50 | -1.69E-46 |
| MS.gene050134 | MS.gene066811 | 0.872409 | 3.25E-67 | -1.69E-46 |
| MS.gene050134 | MS.gene067141 | 0.81604 | 6.79E-52 | -1.69E-46 |
| MS.gene050134 | MS.gene067331 | 0.889523 | 2.24E-73 | -1.69E-46 |
| MS.gene050134 | MS.gene06803 | 0.901675 | 2.11E-78 | -1.69E-46 |
| MS.gene050134 | MS.gene06833 | 0.846365 | 2.27E-59 | -1.69E-46 |
| MS.gene050134 | MS.gene06999 | 0.840902 | 6.57E-58 | -1.69E-46 |
| MS.gene050134 | MS.gene07018 | 0.833307 | 5.75E-56 | -1.69E-46 |
| MS.gene050134 | MS.gene070946 | 0.877456 | 6.19E-69 | -1.69E-46 |
| MS.gene050134 | MS.gene072093 | 0.866812 | 2.17E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene07244 | 0.82999 | 3.78E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene072503 | 0.865238 | 6.83E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene072589 | 0.917003 | 9.00E-86 | -1.69E-46 |
| MS.gene050134 | MS.gene072591 | 0.879867 | 8.78E-70 | -1.69E-46 |
| MS.gene050134 | MS.gene073358 | 0.829613 | 4.67E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene074400 | 0.868765 | 5.12E-66 | -1.69E-46 |
| MS.gene050134 | MS.gene074593 | 0.807955 | 3.92E-50 | -1.69E-46 |
| MS.gene050134 | MS.gene08521 | 0.905595 | 3.64E-80 | -1.69E-46 |
| MS.gene050134 | MS.gene08869 | 0.950487 | 1.49E-108 | -1.69E-46 |
| MS.gene050134 | MS.gene08870 | 0.97882 | 1.24E-146 | -1.69E-46 |
| MS.gene050134 | MS.gene08871 | 0.983909 | 4.76E-159 | -1.69E-46 |
| MS.gene050134 | MS.gene09038 | 0.864485 | 1.18E-64 | -1.69E-46 |
| MS.gene050134 | MS.gene09204 | 0.866853 | 2.10E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene09761 | 0.864127 | 1.52E-64 | -1.69E-46 |
| MS.gene050134 | MS.gene09762 | 0.813457 | 2.54E-51 | -1.69E-46 |
| MS.gene050134 | MS.gene09779 | 0.873392 | 1.52E-67 | -1.69E-46 |
| MS.gene050134 | MS.gene09780 | 0.881525 | 2.23E-70 | -1.69E-46 |
| MS.gene050134 | MS.gene20153 | 0.908999 | 9.24E-82 | -1.69E-46 |
| MS.gene050134 | MS.gene20766 | 0.862392 | 5.24E-64 | -1.69E-46 |
| MS.gene050134 | MS.gene22507 | 0.819245 | 1.28E-52 | -1.69E-46 |
| MS.gene050134 | MS.gene22784 | 0.887685 | 1.15E-72 | -1.69E-46 |
| MS.gene050134 | MS.gene22957 | 0.813555 | 2.41E-51 | -1.69E-46 |
| MS.gene050134 | MS.gene23031 | 0.879842 | 8.96E-70 | -1.69E-46 |
| MS.gene050134 | MS.gene23303 | 0.852602 | 4.15E-61 | -1.69E-46 |
| MS.gene050134 | MS.gene23317 | 0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene23437 | 0.841364 | 4.97E-58 | -1.69E-46 |
| MS.gene050134 | MS.gene24232 | 0.886388 | 3.57E-72 | -1.69E-46 |
| MS.gene050134 | MS.gene24639 | 0.875593 | 2.73E-68 | -1.69E-46 |
| MS.gene050134 | MS.gene25236 | 0.883012 | 6.43E-71 | -1.69E-46 |
| MS.gene050134 | MS.gene25238 | 0.813976 | 1.95E-51 | -1.69E-46 |
| MS.gene050134 | MS.gene25639 | 0.881907 | 1.62E-70 | -1.69E-46 |
| MS.gene050134 | MS.gene25903 | 0.914295 | 2.27E-84 | -1.69E-46 |
| MS.gene050134 | MS.gene26343 | 0.84739 | 1.19E-59 | -1.69E-46 |
| MS.gene050134 | MS.gene26620 | 0.800578 | 1.35E-48 | -1.69E-46 |
| MS.gene050134 | MS.gene26707 | 0.859322 | 4.48E-63 | -1.69E-46 |
| MS.gene050134 | MS.gene27003 | 0.858419 | 8.34E-63 | -1.69E-46 |
| MS.gene050134 | MS.gene27265 | 0.902421 | 9.86E-79 | -1.69E-46 |
| MS.gene050134 | MS.gene28147 | 0.901209 | 3.38E-78 | -1.69E-46 |
| MS.gene050134 | MS.gene28568 | 0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene30990 | 0.812724 | 3.67E-51 | -1.69E-46 |
| MS.gene050134 | MS.gene31039 | 0.829556 | 4.82E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene31991 | 0.824235 | 9.01E-54 | -1.69E-46 |
| MS.gene050134 | MS.gene32591 | 0.856164 | 3.87E-62 | -1.69E-46 |
| MS.gene050134 | MS.gene34372 | 0.908673 | 1.32E-81 | -1.69E-46 |
| MS.gene050134 | MS.gene36310 | 0.805204 | 1.49E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene37037 | 0.828798 | 7.36E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene38035 | 0.889728 | 1.87E-73 | -1.69E-46 |
| MS.gene050134 | MS.gene38222 | 0.864334 | 1.31E-64 | -1.69E-46 |
| MS.gene050134 | MS.gene38735 | 0.811529 | 6.69E-51 | -1.69E-46 |
| MS.gene050134 | MS.gene40285 | 0.800308 | 1.53E-48 | -1.69E-46 |
| MS.gene050134 | MS.gene41726 | 0.829208 | 5.85E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene43070 | 0.836939 | 6.97E-57 | -1.69E-46 |
| MS.gene050134 | MS.gene43071 | 0.848848 | 4.72E-60 | -1.69E-46 |
| MS.gene050134 | MS.gene44930 | 0.804801 | 1.81E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene46387 | 0.875059 | 4.15E-68 | -1.69E-46 |
| MS.gene050134 | MS.gene46903 | 0.817423 | 3.32E-52 | -1.69E-46 |
| MS.gene050134 | MS.gene46907 | 0.836826 | 7.45E-57 | -1.69E-46 |
| MS.gene050134 | MS.gene49109 | 0.800667 | 1.29E-48 | -1.69E-46 |
| MS.gene050134 | MS.gene50269 | 0.829284 | 5.61E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene50640 | 0.897513 | 1.31E-76 | -1.69E-46 |
| MS.gene050134 | MS.gene50756 | 0.902144 | 1.31E-78 | -1.69E-46 |
| MS.gene050134 | MS.gene50758 | 0.891927 | 2.54E-74 | -1.69E-46 |
| MS.gene050134 | MS.gene51467 | 0.819069 | 1.41E-52 | -1.69E-46 |
| MS.gene050134 | MS.gene51534 | 0.824473 | 7.92E-54 | -1.69E-46 |
| MS.gene050134 | MS.gene51868 | 0.806843 | 6.75E-50 | -1.69E-46 |
| MS.gene050134 | MS.gene52105 | 0.831072 | 2.05E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene52415 | 0.835323 | 1.79E-56 | -1.69E-46 |
| MS.gene050134 | MS.gene53465 | 0.808238 | 3.42E-50 | -1.69E-46 |
| MS.gene050134 | MS.gene55619 | 0.910508 | 1.73E-82 | -1.69E-46 |
| MS.gene050134 | MS.gene55890 | 0.938125 | 1.13E-98 | -1.69E-46 |
| MS.gene050134 | MS.gene58173 | 0.855427 | 6.36E-62 | -1.69E-46 |
| MS.gene050134 | MS.gene58497 | 0.833835 | 4.24E-56 | -1.69E-46 |
| MS.gene050134 | MS.gene59228 | 0.901518 | 2.47E-78 | -1.69E-46 |
| MS.gene050134 | MS.gene59230 | 0.881111 | 3.15E-70 | -1.69E-46 |
| MS.gene050134 | MS.gene59609 | 0.899644 | 1.62E-77 | -1.69E-46 |
| MS.gene050134 | MS.gene60693 | 0.852759 | 3.74E-61 | -1.69E-46 |
| MS.gene050134 | MS.gene61251 | 0.841583 | 4.35E-58 | -1.69E-46 |
| MS.gene050134 | MS.gene62561 | 0.84556 | 3.76E-59 | -1.69E-46 |
| MS.gene050134 | MS.gene62620 | 0.836657 | 8.23E-57 | -1.69E-46 |
| MS.gene050134 | MS.gene62683 | 0.832198 | 1.08E-55 | -1.69E-46 |
| MS.gene050134 | MS.gene62695 | 0.835459 | 1.66E-56 | -1.69E-46 |
| MS.gene050134 | MS.gene62791 | 0.88742 | 1.45E-72 | -1.69E-46 |
| MS.gene050134 | MS.gene63973 | 0.825492 | 4.55E-54 | -1.69E-46 |
| MS.gene050134 | MS.gene64754 | 0.82148 | 3.95E-53 | -1.69E-46 |
| MS.gene050134 | MS.gene68740 | 0.834596 | 2.74E-56 | -1.69E-46 |
| MS.gene050134 | MS.gene70316 | 0.921757 | 2.37E-88 | -1.69E-46 |
| MS.gene050134 | MS.gene70579 | 0.907038 | 7.80E-81 | -1.69E-46 |
| MS.gene050134 | MS.gene72382 | 0.885198 | 1.00E-71 | -1.69E-46 |
| MS.gene050134 | MS.gene73000 | 0.892811 | 1.12E-74 | -1.69E-46 |
| MS.gene050134 | MS.gene74837 | 0.803069 | 4.16E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene76031 | 0.848547 | 5.72E-60 | -1.69E-46 |
| MS.gene050134 | MS.gene76493 | 0.825603 | 4.28E-54 | -1.69E-46 |
| MS.gene050134 | MS.gene79721 | 0.920429 | 1.29E-87 | -1.69E-46 |
| MS.gene050134 | MS.gene81099 | 0.818103 | 2.33E-52 | -1.69E-46 |
| MS.gene050134 | MS.gene82009 | 0.84088 | 6.66E-58 | -1.69E-46 |
| MS.gene050134 | MS.gene82038 | 0.864086 | 1.57E-64 | -1.69E-46 |
| MS.gene050134 | MS.gene82489 | 0.834512 | 2.87E-56 | -1.69E-46 |
| MS.gene050134 | MS.gene82545 | 0.867775 | 1.07E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene83175 | 0.815621 | 8.42E-52 | -1.69E-46 |
| MS.gene050134 | MS.gene88918 | 0.881119 | 3.13E-70 | -1.69E-46 |
| MS.gene050134 | MS.gene90945 | 0.850567 | 1.56E-60 | -1.69E-46 |
| MS.gene050134 | MS.gene92142 | 0.877397 | 6.49E-69 | -1.69E-46 |
| MS.gene050134 | MS.gene95672 | 0.819106 | 1.38E-52 | -1.69E-46 |
| MS.gene050134 | MS.gene95803 | 0.853866 | 1.80E-61 | -1.69E-46 |
| MS.gene050134 | MS.gene96225 | 0.928964 | 1.37E-92 | -1.69E-46 |
| MS.gene050134 | MS.gene96825 | 0.87448 | 6.54E-68 | -1.69E-46 |
| MS.gene050134 | MS.gene98171 | 0.907076 | 7.49E-81 | -1.69E-46 |
| MS.gene050134 | MS.gene98978 | 0.818998 | 1.46E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050134 | MS.gene054186 | PPI |
| MS.gene08870 | MS.gene050134 | PPI |
| MS.gene050134 | MS.gene039110 | PPI |
| MS.gene045180 | MS.gene050134 | PPI |
| MS.gene007662 | MS.gene050134 | PPI |
| MS.gene45417 | MS.gene050134 | PPI |
| MS.gene050134 | MS.gene63721 | PPI |
| MS.gene056257 | MS.gene050134 | PPI |
| MS.gene08871 | MS.gene050134 | PPI |
| MS.gene050134 | MS.gene24598 | PPI |
| MS.gene060216 | MS.gene050134 | PPI |
| MS.gene050134 | MS.gene067072 | PPI |
| MS.gene059422 | MS.gene050134 | PPI |
| MS.gene08636 | MS.gene050134 | PPI |
| MS.gene037324 | MS.gene050134 | PPI |
| MS.gene75537 | MS.gene050134 | PPI |
| MS.gene063366 | MS.gene050134 | PPI |
| MS.gene41916 | MS.gene050134 | PPI |
| MS.gene066163 | MS.gene050134 | PPI |
| MS.gene040581 | MS.gene050134 | PPI |
| MS.gene007661 | MS.gene050134 | PPI |
| MS.gene99744 | MS.gene050134 | PPI |
| MS.gene050134 | MS.gene001986 | PPI |
| MS.gene029242 | MS.gene050134 | PPI |
| MS.gene029840 | MS.gene050134 | PPI |
| MS.gene050134 | MS.gene029840 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050134.t1 | MTR_4g059400 | 99.398 | 166 | 1 | 0 | 1 | 166 | 1 | 166 | 1.89e-116 | 327 |
| MS.gene050134.t1 | MTR_1g064500 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 2.24e-114 | 321 |
| MS.gene050134.t1 | MTR_2g094300 | 83.537 | 164 | 27 | 0 | 1 | 164 | 1 | 164 | 1.50e-97 | 279 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050134.t1 | AT5G60670 | 90.361 | 166 | 16 | 0 | 1 | 166 | 1 | 166 | 9.53e-108 | 305 |
| MS.gene050134.t1 | AT2G37190 | 89.759 | 166 | 17 | 0 | 1 | 166 | 1 | 166 | 1.20e-107 | 304 |
| MS.gene050134.t1 | AT3G53430 | 89.157 | 166 | 18 | 0 | 1 | 166 | 1 | 166 | 2.70e-107 | 303 |
Find 64 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTCTTGCGGTCCCTTTC+TGG | 0.085933 | 4.2:-44210622 | None:intergenic |
| CGGAACGGTGAAGGAGATTT+TGG | 0.108347 | 4.2:+44210738 | MS.gene050134:CDS |
| GGACGTAAACTTCGACGATT+TGG | 0.192090 | 4.2:-44210381 | None:intergenic |
| CCAATCCTTGGCGGTTTCTT+TGG | 0.201986 | 4.2:-44210497 | None:intergenic |
| CCAAGGATTGGAAGGGTCTT+AGG | 0.217246 | 4.2:+44210509 | MS.gene050134:CDS |
| ATGTCTTCTCCGATCTTCTT+TGG | 0.296410 | 4.2:-44210472 | None:intergenic |
| ACTAAGAACATCAAGCATAA+TGG | 0.336453 | 4.2:+44210643 | MS.gene050134:CDS |
| TCTGTTGGGTGTACTGTTGA+TGG | 0.361476 | 4.2:+44210772 | MS.gene050134:CDS |
| CTAAGAACATCAAGCATAAT+GGG | 0.363010 | 4.2:+44210644 | MS.gene050134:CDS |
| GACGTAAACTTCGACGATTT+GGG | 0.369524 | 4.2:-44210380 | None:intergenic |
| CAAAATCTCCTTCACCGTTC+CGG | 0.392918 | 4.2:-44210737 | None:intergenic |
| ATCTCCTGCTGCAAATCCTT+TGG | 0.401059 | 4.2:-44210802 | None:intergenic |
| ATTTGGGATGGATCGAGCTT+TGG | 0.421723 | 4.2:-44210364 | None:intergenic |
| TTGGGGACTTGTGTTTCTGT+TGG | 0.422484 | 4.2:+44210757 | MS.gene050134:CDS |
| TGCGGCGGCGCTGGTTATCA+AGG | 0.430495 | 4.2:+44210588 | MS.gene050134:CDS |
| CCAAAGAAACCGCCAAGGAT+TGG | 0.444226 | 4.2:+44210497 | MS.gene050134:CDS |
| TGGGGACTTGTGTTTCTGTT+GGG | 0.450633 | 4.2:+44210758 | MS.gene050134:CDS |
| TGTTCCGTCTGCGGCGGCGC+TGG | 0.455070 | 4.2:+44210579 | MS.gene050134:CDS |
| GAGACCGAGAGGACCGATCT+TGG | 0.459185 | 4.2:-44210446 | None:intergenic |
| GGCTTTGAAGGAACCAGAAA+GGG | 0.473237 | 4.2:+44210609 | MS.gene050134:CDS |
| GATCTTGGGAGCGAGGGAAC+TGG | 0.475143 | 4.2:-44210431 | None:intergenic |
| GAAGTTTACGTCCGCGTCAC+CGG | 0.477456 | 4.2:+44210391 | MS.gene050134:CDS |
| GCTGGTTATCAAGGCTTTGA+AGG | 0.478691 | 4.2:+44210597 | MS.gene050134:CDS |
| AGACCGAGAGGACCGATCTT+GGG | 0.482147 | 4.2:-44210445 | None:intergenic |
| CGCGTCACCGGCGGTGAAGT+CGG | 0.482477 | 4.2:+44210403 | MS.gene050134:CDS |
| AGTTCCCTCGCTCCCAAGAT+CGG | 0.485343 | 4.2:+44210433 | MS.gene050134:CDS |
| TCGATGGCGAAGGAGCTTGC+CGG | 0.485429 | 4.2:+44210718 | MS.gene050134:CDS |
| CAAGGATTGGAAGGGTCTTA+GGG | 0.485831 | 4.2:+44210510 | MS.gene050134:CDS |
| AAGACCCTTCCAATCCTTGG+CGG | 0.491678 | 4.2:-44210506 | None:intergenic |
| GATTATGAAGCCGAGGTCGA+TGG | 0.494531 | 4.2:+44210702 | MS.gene050134:CDS |
| CTGTTGGGTGTACTGTTGAT+GGG | 0.503488 | 4.2:+44210773 | MS.gene050134:CDS |
| CCTAAGACCCTTCCAATCCT+TGG | 0.507224 | 4.2:-44210509 | None:intergenic |
| TGGGATGGATCGAGCTTTGG+CGG | 0.507491 | 4.2:-44210361 | None:intergenic |
| GGCGAAGGAGCTTGCCGGAA+CGG | 0.508951 | 4.2:+44210723 | MS.gene050134:CDS |
| CGCTGTTGTTCCGTCTGCGG+CGG | 0.521792 | 4.2:+44210573 | MS.gene050134:CDS |
| GCTCCCAAGATCGGTCCTCT+CGG | 0.529023 | 4.2:+44210442 | MS.gene050134:CDS |
| GGAGCTTGCCGGAACGGTGA+AGG | 0.535229 | 4.2:+44210729 | MS.gene050134:CDS |
| AGCTCCTTCGCCATCGACCT+CGG | 0.537913 | 4.2:-44210712 | None:intergenic |
| AGAAACCGCCAAGGATTGGA+AGG | 0.540852 | 4.2:+44210501 | MS.gene050134:CDS |
| CGTTCAGAATCGTCAGGCTA+AGG | 0.541896 | 4.2:+44210549 | MS.gene050134:CDS |
| GTTGAGATTCCTCAGGATTG+AGG | 0.542687 | 4.2:+44210838 | MS.gene050134:CDS |
| GGCAGCTCCGACTTCACCGC+CGG | 0.547290 | 4.2:-44210410 | None:intergenic |
| GCTCACCGTTCAGAATCGTC+AGG | 0.553915 | 4.2:+44210543 | MS.gene050134:CDS |
| AGATCCAAAGGATTTGCAGC+AGG | 0.556469 | 4.2:+44210798 | MS.gene050134:CDS |
| AGGCTTTGAAGGAACCAGAA+AGG | 0.556759 | 4.2:+44210608 | MS.gene050134:CDS |
| TGATGTTCTTAGTCTTCTTG+CGG | 0.558436 | 4.2:-44210633 | None:intergenic |
| AGGACCGATCTTGGGAGCGA+GGG | 0.558873 | 4.2:-44210437 | None:intergenic |
| CGACTTCACCGCCGGTGACG+CGG | 0.560163 | 4.2:-44210402 | None:intergenic |
| TGGTGATGTTGAGATTCCTC+AGG | 0.564181 | 4.2:+44210831 | MS.gene050134:CDS |
| GAGGACCGATCTTGGGAGCG+AGG | 0.581430 | 4.2:-44210438 | None:intergenic |
| GGTCTCTCACCAAAGAAGAT+CGG | 0.586947 | 4.2:+44210463 | MS.gene050134:CDS |
| ATAACCAGCGCCGCCGCAGA+CGG | 0.589868 | 4.2:-44210583 | None:intergenic |
| TTGCAGCAGGAGATTAGTGA+TGG | 0.592966 | 4.2:+44210811 | MS.gene050134:CDS |
| GAAGCCGAGGTCGATGGCGA+AGG | 0.599042 | 4.2:+44210708 | MS.gene050134:CDS |
| GTTTACGTCCGCGTCACCGG+CGG | 0.607165 | 4.2:+44210394 | MS.gene050134:CDS |
| TAAACTTCGACGATTTGGGA+TGG | 0.609008 | 4.2:-44210376 | None:intergenic |
| TGTTGATGGGAAAGATCCAA+AGG | 0.621231 | 4.2:+44210786 | MS.gene050134:CDS |
| GGTCGCTGTTGTTCCGTCTG+CGG | 0.635590 | 4.2:+44210570 | MS.gene050134:CDS |
| TTGCGAAGATTATGAAGCCG+AGG | 0.654828 | 4.2:+44210695 | MS.gene050134:CDS |
| TTCTTTGGTGAGAGACCGAG+AGG | 0.661014 | 4.2:-44210457 | None:intergenic |
| CTTAGCCTGACGATTCTGAA+CGG | 0.665775 | 4.2:-44210548 | None:intergenic |
| GAAACCGCCAAGGATTGGAA+GGG | 0.668035 | 4.2:+44210502 | MS.gene050134:CDS |
| CATCGCCAAAGAAACCGCCA+AGG | 0.687884 | 4.2:+44210492 | MS.gene050134:CDS |
| CAACAACCACCTCAATCCTG+AGG | 0.689306 | 4.2:-44210847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACTAAGAACATCAAGCATAA+TGG | + | chr4.2:44210643-44210662 | MS.gene050134:CDS | 30.0% | |
| CTAAGAACATCAAGCATAAT+GGG | + | chr4.2:44210644-44210663 | MS.gene050134:CDS | 30.0% | |
| ! | TGATGTTCTTAGTCTTCTTG+CGG | - | chr4.2:44210636-44210655 | None:intergenic | 35.0% |
| ATGTCTTCTCCGATCTTCTT+TGG | - | chr4.2:44210475-44210494 | None:intergenic | 40.0% | |
| GACGTAAACTTCGACGATTT+GGG | - | chr4.2:44210383-44210402 | None:intergenic | 40.0% | |
| ! | TAAACTTCGACGATTTGGGA+TGG | - | chr4.2:44210379-44210398 | None:intergenic | 40.0% |
| ! | TGTTGATGGGAAAGATCCAA+AGG | + | chr4.2:44210786-44210805 | MS.gene050134:CDS | 40.0% |
| AGATCCAAAGGATTTGCAGC+AGG | + | chr4.2:44210798-44210817 | MS.gene050134:CDS | 45.0% | |
| ATCTCCTGCTGCAAATCCTT+TGG | - | chr4.2:44210805-44210824 | None:intergenic | 45.0% | |
| CAAAATCTCCTTCACCGTTC+CGG | - | chr4.2:44210740-44210759 | None:intergenic | 45.0% | |
| CAAGGATTGGAAGGGTCTTA+GGG | + | chr4.2:44210510-44210529 | MS.gene050134:CDS | 45.0% | |
| CTGTTGGGTGTACTGTTGAT+GGG | + | chr4.2:44210773-44210792 | MS.gene050134:CDS | 45.0% | |
| CTTAGCCTGACGATTCTGAA+CGG | - | chr4.2:44210551-44210570 | None:intergenic | 45.0% | |
| GGACGTAAACTTCGACGATT+TGG | - | chr4.2:44210384-44210403 | None:intergenic | 45.0% | |
| GGTCTCTCACCAAAGAAGAT+CGG | + | chr4.2:44210463-44210482 | MS.gene050134:CDS | 45.0% | |
| TCTGTTGGGTGTACTGTTGA+TGG | + | chr4.2:44210772-44210791 | MS.gene050134:CDS | 45.0% | |
| TTGCAGCAGGAGATTAGTGA+TGG | + | chr4.2:44210811-44210830 | MS.gene050134:CDS | 45.0% | |
| TTGCGAAGATTATGAAGCCG+AGG | + | chr4.2:44210695-44210714 | MS.gene050134:CDS | 45.0% | |
| ! | ATTTGGGATGGATCGAGCTT+TGG | - | chr4.2:44210367-44210386 | None:intergenic | 45.0% |
| ! | GAACGGTGAAGGAGATTTTG+GGG | + | chr4.2:44210740-44210759 | MS.gene050134:CDS | 45.0% |
| ! | GCTGGTTATCAAGGCTTTGA+AGG | + | chr4.2:44210597-44210616 | MS.gene050134:CDS | 45.0% |
| ! | GGAACGGTGAAGGAGATTTT+GGG | + | chr4.2:44210739-44210758 | MS.gene050134:CDS | 45.0% |
| ! | TGGGGACTTGTGTTTCTGTT+GGG | + | chr4.2:44210758-44210777 | MS.gene050134:CDS | 45.0% |
| ! | TGGTGATGTTGAGATTCCTC+AGG | + | chr4.2:44210831-44210850 | MS.gene050134:CDS | 45.0% |
| ! | TTGGGGACTTGTGTTTCTGT+TGG | + | chr4.2:44210757-44210776 | MS.gene050134:CDS | 45.0% |
| !! | AGGCTTTGAAGGAACCAGAA+AGG | + | chr4.2:44210608-44210627 | MS.gene050134:CDS | 45.0% |
| !! | GGCTTTGAAGGAACCAGAAA+GGG | + | chr4.2:44210609-44210628 | MS.gene050134:CDS | 45.0% |
| AAGACCCTTCCAATCCTTGG+CGG | - | chr4.2:44210509-44210528 | None:intergenic | 50.0% | |
| AGAAACCGCCAAGGATTGGA+AGG | + | chr4.2:44210501-44210520 | MS.gene050134:CDS | 50.0% | |
| CCAAAGAAACCGCCAAGGAT+TGG | + | chr4.2:44210497-44210516 | MS.gene050134:CDS | 50.0% | |
| CCAAGGATTGGAAGGGTCTT+AGG | + | chr4.2:44210509-44210528 | MS.gene050134:CDS | 50.0% | |
| CCAATCCTTGGCGGTTTCTT+TGG | - | chr4.2:44210500-44210519 | None:intergenic | 50.0% | |
| CCTAAGACCCTTCCAATCCT+TGG | - | chr4.2:44210512-44210531 | None:intergenic | 50.0% | |
| CGTTCAGAATCGTCAGGCTA+AGG | + | chr4.2:44210549-44210568 | MS.gene050134:CDS | 50.0% | |
| GAAACCGCCAAGGATTGGAA+GGG | + | chr4.2:44210502-44210521 | MS.gene050134:CDS | 50.0% | |
| GATTATGAAGCCGAGGTCGA+TGG | + | chr4.2:44210702-44210721 | MS.gene050134:CDS | 50.0% | |
| TTCTTTGGTGAGAGACCGAG+AGG | - | chr4.2:44210460-44210479 | None:intergenic | 50.0% | |
| ! | CGGAACGGTGAAGGAGATTT+TGG | + | chr4.2:44210738-44210757 | MS.gene050134:CDS | 50.0% |
| AGACCGAGAGGACCGATCTT+GGG | - | chr4.2:44210448-44210467 | None:intergenic | 55.0% | |
| AGTTCCCTCGCTCCCAAGAT+CGG | + | chr4.2:44210433-44210452 | MS.gene050134:CDS | 55.0% | |
| CATCGCCAAAGAAACCGCCA+AGG | + | chr4.2:44210492-44210511 | MS.gene050134:CDS | 55.0% | |
| GAAGTTTACGTCCGCGTCAC+CGG | + | chr4.2:44210391-44210410 | MS.gene050134:CDS | 55.0% | |
| GCTCACCGTTCAGAATCGTC+AGG | + | chr4.2:44210543-44210562 | MS.gene050134:CDS | 55.0% | |
| GTCTTCTTGCGGTCCCTTTC+TGG | - | chr4.2:44210625-44210644 | None:intergenic | 55.0% | |
| ! | TGGGATGGATCGAGCTTTGG+CGG | - | chr4.2:44210364-44210383 | None:intergenic | 55.0% |
| AGCTCCTTCGCCATCGACCT+CGG | - | chr4.2:44210715-44210734 | None:intergenic | 60.0% | |
| AGGACCGATCTTGGGAGCGA+GGG | - | chr4.2:44210440-44210459 | None:intergenic | 60.0% | |
| GAGACCGAGAGGACCGATCT+TGG | - | chr4.2:44210449-44210468 | None:intergenic | 60.0% | |
| GATCTTGGGAGCGAGGGAAC+TGG | - | chr4.2:44210434-44210453 | None:intergenic | 60.0% | |
| GCTCCCAAGATCGGTCCTCT+CGG | + | chr4.2:44210442-44210461 | MS.gene050134:CDS | 60.0% | |
| GGTCGCTGTTGTTCCGTCTG+CGG | + | chr4.2:44210570-44210589 | MS.gene050134:CDS | 60.0% | |
| TCGATGGCGAAGGAGCTTGC+CGG | + | chr4.2:44210718-44210737 | MS.gene050134:CDS | 60.0% | |
| ATAACCAGCGCCGCCGCAGA+CGG | - | chr4.2:44210586-44210605 | None:intergenic | 65.0% | |
| CGCTGTTGTTCCGTCTGCGG+CGG | + | chr4.2:44210573-44210592 | MS.gene050134:CDS | 65.0% | |
| GAAGCCGAGGTCGATGGCGA+AGG | + | chr4.2:44210708-44210727 | MS.gene050134:CDS | 65.0% | |
| GAGGACCGATCTTGGGAGCG+AGG | - | chr4.2:44210441-44210460 | None:intergenic | 65.0% | |
| GGAGCTTGCCGGAACGGTGA+AGG | + | chr4.2:44210729-44210748 | MS.gene050134:CDS | 65.0% | |
| GGCGAAGGAGCTTGCCGGAA+CGG | + | chr4.2:44210723-44210742 | MS.gene050134:CDS | 65.0% | |
| GTTTACGTCCGCGTCACCGG+CGG | + | chr4.2:44210394-44210413 | MS.gene050134:CDS | 65.0% | |
| !! | TGCGGCGGCGCTGGTTATCA+AGG | + | chr4.2:44210588-44210607 | MS.gene050134:CDS | 65.0% |
| CGACTTCACCGCCGGTGACG+CGG | - | chr4.2:44210405-44210424 | None:intergenic | 70.0% | |
| CGCGTCACCGGCGGTGAAGT+CGG | + | chr4.2:44210403-44210422 | MS.gene050134:CDS | 70.0% | |
| GGCAGCTCCGACTTCACCGC+CGG | - | chr4.2:44210413-44210432 | None:intergenic | 70.0% | |
| TGTTCCGTCTGCGGCGGCGC+TGG | + | chr4.2:44210579-44210598 | MS.gene050134:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 44210358 | 44210858 | 44210358 | ID=MS.gene050134 |
| chr4.2 | mRNA | 44210358 | 44210858 | 44210358 | ID=MS.gene050134.t1;Parent=MS.gene050134 |
| chr4.2 | exon | 44210358 | 44210858 | 44210358 | ID=MS.gene050134.t1.exon1;Parent=MS.gene050134.t1 |
| chr4.2 | CDS | 44210358 | 44210858 | 44210358 | ID=cds.MS.gene050134.t1;Parent=MS.gene050134.t1 |
| Gene Sequence |
| Protein sequence |
