AlfalfaGEDB | MS.gene28875

M. sativa cultivar XinJiangDaYe / MS.gene28875

KEGG: K18757
GO: -
PFAM: PF05383.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28875.t1	XP_003629259.1	89.4	404	39	2	1	401	1	403	6.20E-162	580.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28875.t1	Q94K80	32.3	368	204	13	46	400	101	436	2.3e-16	88.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28875.t1	G7LB62	89.4	404	39	2	1	401	1	403	4.4e-162	580.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050750	MS.gene28875	-0.80276	4.81E-49	-1.69E-46
MS.gene050953	MS.gene28875	-0.804625	1.97E-49	-1.69E-46
MS.gene052176	MS.gene28875	-0.806599	7.61E-50	-1.69E-46
MS.gene052309	MS.gene28875	0.823769	1.16E-53	-1.69E-46
MS.gene052358	MS.gene28875	0.85344	2.39E-61	-1.69E-46
MS.gene052361	MS.gene28875	0.801357	9.35E-49	-1.69E-46
MS.gene052965	MS.gene28875	0.814408	1.56E-51	-1.69E-46
MS.gene054405	MS.gene28875	-0.800799	1.22E-48	-1.69E-46
MS.gene060572	MS.gene28875	-0.814684	1.36E-51	-1.69E-46
MS.gene061040	MS.gene28875	0.860374	2.16E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28875.t1	MTR_8g075120	93.812	404	21	2	1	401	1	403	0.0	680
MS.gene28875.t1	MTR_5g022790	44.700	434	178	17	4	400	15	423	1.29e-88	282
MS.gene28875.t1	MTR_5g022790	49.158	297	113	11	126	400	8	288	8.39e-76	241
MS.gene28875.t1	MTR_5g022790	49.158	297	113	11	126	400	8	288	1.60e-74	241
MS.gene28875.t1	MTR_1g025920	38.298	423	198	18	17	407	91	482	3.58e-48	171
MS.gene28875.t1	MTR_1g025920	38.702	416	192	18	17	400	91	475	6.93e-48	171
MS.gene28875.t1	MTR_3g114450	33.333	381	178	16	59	399	88	432	1.87e-34	133
MS.gene28875.t1	MTR_3g114340	34.054	370	165	18	69	399	33	362	8.04e-31	122
MS.gene28875.t1	MTR_3g114450	31.476	359	170	16	59	377	88	410	6.10e-24	103
MS.gene28875.t1	MTR_5g088200	45.161	93	50	1	310	401	290	382	6.18e-17	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28875.t1	AT4G35890	35.219	389	189	17	37	400	86	436	1.48e-43	159
MS.gene28875.t1	AT4G35890	34.153	366	178	17	37	377	86	413	4.22e-36	137
MS.gene28875.t1	AT5G66100	33.250	400	193	18	26	400	52	402	4.46e-33	129
MS.gene28875.t1	AT5G66100	30.745	322	158	17	49	345	66	347	1.71e-11	65.5

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Find 149 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACCTGCGATTGAGGCA+AGG	0.626925	8.2:+29872092	None:intergenic
AACAACAGATGAAGTACGAA+CGG	0.617545	8.2:+29869833	None:intergenic
AACAATCTGGCTCCAAGGTG+CGG	0.577674	8.2:+29872401	None:intergenic
AAGAGGAACATGGATGATCA+GGG	0.588462	8.2:-29870900	MS.gene28875:CDS
AAGCAAGTTAAGGATACTGC+AGG	0.569915	8.2:-29871766	MS.gene28875:CDS
AAGGTCGATAAATCCAAGGA+AGG	0.645541	8.2:+29872111	None:intergenic
AATCCTGCTATTAAATTTAG+AGG	0.222995	8.2:+29870870	None:intergenic
AATCTGGCTCCAAGGTGCGG+CGG	0.658713	8.2:+29872404	None:intergenic
AATTCAAACGCGTCTTCCAA+TGG	0.478217	8.2:-29871691	MS.gene28875:CDS
AATTCATCCAGGAACCGGAA+TGG	0.615009	8.2:-29871532	MS.gene28875:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACTCATCAGAAAACTTAT+CGG	-	chr8.2:29870164-29870183	MS.gene28875:intron	30.0%
CGCAACTTCTTAAAACTTAA+GGG	-	chr8.2:29871545-29871564	MS.gene28875:CDS	30.0%
GAATATCCAAAACATTGATC+TGG	-	chr8.2:29872303-29872322	MS.gene28875:CDS	30.0%
GATCATATTTCCCTTATGTT+AGG	-	chr8.2:29871452-29871471	MS.gene28875:CDS	30.0%
GCAACTTCTTAAAACTTAAG+GGG	-	chr8.2:29871546-29871565	MS.gene28875:CDS	30.0%
GTTCCTCTAAATTTAATAGC+AGG	-	chr8.2:29871011-29871030	MS.gene28875:intron	30.0%
TCATATTTCCCTTATGTTAG+GGG	-	chr8.2:29871454-29871473	MS.gene28875:CDS	30.0%
TCGCAACTTCTTAAAACTTA+AGG	-	chr8.2:29871544-29871563	MS.gene28875:CDS	30.0%
TGACAACATTCAGATTGTAT+TGG	-	chr8.2:29872025-29872044	MS.gene28875:intron	30.0%
TTAACGGTAGAGACAATTAT+AGG	-	chr8.2:29870479-29870498	MS.gene28875:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	29869455	29872451	29869455	ID=MS.gene28875
chr8.2	mRNA	29869455	29872451	29869455	ID=MS.gene28875.t1;Parent=MS.gene28875
chr8.2	exon	29872098	29872451	29872098	ID=MS.gene28875.t1.exon1;Parent=MS.gene28875.t1
chr8.2	CDS	29872098	29872451	29872098	ID=cds.MS.gene28875.t1;Parent=MS.gene28875.t1
chr8.2	exon	29871290	29871818	29871290	ID=MS.gene28875.t1.exon2;Parent=MS.gene28875.t1
chr8.2	CDS	29871290	29871818	29871290	ID=cds.MS.gene28875.t1;Parent=MS.gene28875.t1
chr8.2	exon	29871059	29871212	29871059	ID=MS.gene28875.t1.exon3;Parent=MS.gene28875.t1
chr8.2	CDS	29871059	29871212	29871059	ID=cds.MS.gene28875.t1;Parent=MS.gene28875.t1
chr8.2	exon	29870863	29870953	29870863	ID=MS.gene28875.t1.exon4;Parent=MS.gene28875.t1
chr8.2	CDS	29870863	29870953	29870863	ID=cds.MS.gene28875.t1;Parent=MS.gene28875.t1
chr8.2	exon	29869824	29869895	29869824	ID=MS.gene28875.t1.exon5;Parent=MS.gene28875.t1
chr8.2	CDS	29869824	29869895	29869824	ID=cds.MS.gene28875.t1;Parent=MS.gene28875.t1
chr8.2	exon	29869455	29869478	29869455	ID=MS.gene28875.t1.exon6;Parent=MS.gene28875.t1
chr8.2	CDS	29869455	29869478	29869455	ID=cds.MS.gene28875.t1;Parent=MS.gene28875.t1

Gene Sequence

>MS.gene28875

ATGGCCATGAACGCTTCCTCTCCCGCCGCCGCACCTTGGAGCCAGATTGTTGCCTCCACCGCTGCTTCCGCCGTACCTCATTCATCGCCGTCACCTCCTCCTCCTTCCTCCGCCGCTGTCGACACTTTCGCCGTCACTGAGGCGGCGGAAGACATCGACAACACTTCCGGTGGTAAGAGACCTGTTTGGAGTAAACCCTCCAATGCTGCTGCTTCTTCGGTCATGGATGCTGACTCATGGCCTGCTTTATCTGAATCCGCCAAAGCTCCGGCGAAATCGCCACCACCACCGCCATCACCACCACAGGAATTGGTGAAACCTTCCTTGGATTTATCGACCTTGCCTCAATCGCAGGTATTTTTTTCTCCTACTTTGGTTGCTTATTTATTACGTCAAAAAATAATAAGTAAATAATTAAATAGCTCCTTTATTTATCAAGTTAGGGTTTGTTGTATTCTGAGTTAGTTTTGTTATTATTTGCATATAACTGAAATATATTTGGAATTGTTACTGGAGATCAAGTTATTTACTTGTTTAGTTTTGATTGCAAAACGTGTTTACTATTTTACTTTCTGTTTTTGTTATGTTTGTGGACATAGAAATTGATGACATTGTTTTGAGTGTTGATTTTAGGGTACTGGAAGTATGCTTCACTCTCCTCAGAAGCAAGTTAAGGATACTGCAGGCGTCAACAATGTGACATCAGTGCCAACTCATCAGAAAACTTATCGGCGTTCGAATTCAAACGCGTCTTCCAATGGAGGCCGCCAGCCGCCACAAATGTCTGCGCCTCAAGGTTTCGTTGCTGTCCCACCAGGGTCCCACAATCATAACTCTGCTCAAATGGAACATCTACCAAGAGCTGGATTTGTGCCCAATGATCAGCCTCAGCGCCGAAATTCATCCAGGAACCGGAATGGCGGTGGTCTACAACCACGCGGAGATGGTTCTCACCATTTTAACTCTGGAAGCAGACGTGATCAGGACCGCGGAAATCAGGACTGGAATGCTCATAATAGAAATTTTAACGGTAGAGACAATTATAGGTCTCCAAGATTTGTTCCACAGTTTGTAAGGCCTCCACCGCCTACTAATCATGCCCAATACTATCCCCCGCCACCACCACCAATCCCACCTTATATGGGCTCATATGGATATCATGGTATGCTATTTAACATTAAGATGTTATTTTGTGAATTATGGGCATGCTCTGATGATGATGATGATATGCATTTGCAGACCTAACGCTTCAAATGATGTATGGTCCACCTTTGCATGTGGAGCCTCCGAGAAGTGTACCGTTTGTGCAACCGATATCTTCTGCAATATTTTTTCCACCTCCGGATTCTGAGTTGCATACTAAGATTGTCAACCAGATTGACTACTATTTCAGGTAACGTTTATCTATTGGTTTGCACCAATTTTCATTTTATTGTTTTGTTAATTTTTTAACTATCTTACAAAGTTGACTCTTTTTGCCCCAACTTGTCTTTTGCAGTGATCTCAATTTAAGCAACGACACATACTTGAAGAGGAACATGGATGATCAGGGCTGGGTTCCTCTAAATTTAATAGCAGGATTCAATAAAGTAAGTTGTTTGGTGATAATTGATTTGTTTGTTTTAATTAAATCTGACATGGGTATCATTTTGTTTATAACTCATTGATGATACAGAGCAATAGTTTAAAAAATTGACATAATCAATTTATCGTTGGAATATTAAACTGTATCTATATTTAATCAATATCTTTTACCCTGGATTTGAAGATCGTTGTTGTATTCTTTAAGCTCATATTCAGTAAGTCTATTCAATAACAATTTGTATTAGGCTAAACTGCACTTTTTGACCCGTAAGTTTCAAAAAGTTGCGATTTTGGCCCCCTATTTAAAAAAATTACAATTTTGGCCCCTTTCGTCCCAAAATTGCTGAGAAGACGCCACGTGTCCCAAAAAAGGGGTCATAGTCGCAACTTTTTGAGAAGATAAGGGGTCAAAAGATCATATTTCCCTTATGTTAGGGGGTCAAAAGAGCATATTTCCCTAAACAGGGGGTCACTTTTGTCATTTTCTTTCATAGGGGGGCCAAAATCGCAACTTCTTAAAACTTAAGGGGTGAAAAGTGCACTTTAGCCTTTGTATTAATAATCTTTTGATATGGTTTACTTTCTAATTTTACTATTTTTTGATTTGGTTGAAATTGTTTGCTTGTACTAGCCTCTTTTATGATTGTTCTTCTAAGTAACTCTCTTCGATAAAATTAGAAAATATGAGTGGAGGCAAATTTTAATGAGAAAATACACTTTATAACTCTTCGATATATGCACACATTTGCAAAAATCAAAACTTTGTTTGATTGTAACCAAATCCTTTTGATTTTCACTTTTTCACTTGATTTCACTTTTTCTCTTAAATTTTTAAATTGATTAAATTGATGATCTTTTGAATATAATCTTTTGAATATAGATGACGACGATGTTAATGATAATATCAATTATAATGTGGGTTGTACCGTTGTTTGTTTAGTAGATAACAAATGCATTTTTTTTGTCTCTTAGGTCAAACTTTTGACTGACAACATTCAGATTGTATTGGATGCCGTTCGTACTTCATCTGTTGTTGAAGTGCAGGTATTATTGTAGTTGTAACAATTTGTAAGCACAAACATTCTAATTTAGTACTTTTGTTTGTGATGTGTATTTATTAACTTTTTTATTTATTTTTTGTTTTTTTGTTTTCAATCTGTTACTTTTATTTTTAGGGTGATAAAATAAGGAGGCGGAATTGGATCACACTTTCTTCACAGTTTCATAACGTCAATGGTTCTCAAGTTGTTGCACAACTAGCAAAGAATATCCAAAACATTGATCTGGAAACAAATAAAAACGGTGCATCTGGAGAACTGCATGTTTCAAACAGTTAGAGCAGACTTTTCTTAAACAATTTTAATGGAGAATATTGTTCGGATGAGGCAGGAAGCGGGATCTAACATGTTATGA

Protein sequence

>MS.gene28875.t1

MAMNASSPAAAPWSQIVASTAASAVPHSSPSPPPPSSAAVDTFAVTEAAEDIDNTSGGKRPVWSKPSNAAASSVMDADSWPALSESAKAPAKSPPPPPSPPQELVKPSLDLSTLPQSQGTGSMLHSPQKQVKDTAGVNNVTSVPTHQKTYRRSNSNASSNGGRQPPQMSAPQGFVAVPPGSHNHNSAQMEHLPRAGFVPNDQPQRRNSSRNRNGGGLQPRGDGSHHFNSGSRRDQDRGNQDWNAHNRNFNGRDNYRSPRFVPQFVRPPPPTNHAQYYPPPPPPIPPYMGSYGYHDLTLQMMYGPPLHVEPPRSVPFVQPISSAIFFPPPDSELHTKIVNQIDYYFSDLNLSNDTYLKRNMDDQGWVPLNLIAGFNKVKLLTDNIQIVLDAVRTSSVVEVQEAGSNML