Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29142.t1 | XP_003613088.1 | 94.8 | 346 | 13 | 2 | 1 | 341 | 1 | 346 | 7.90E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29142.t1 | Q8LGA1 | 47.7 | 331 | 143 | 9 | 1 | 324 | 1 | 308 | 2.0e-69 | 264.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29142.t1 | G7JXR1 | 94.8 | 346 | 13 | 2 | 1 | 341 | 1 | 346 | 5.7e-179 | 636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29142 | MS.gene065674 | PPI |
| MS.gene29142 | MS.gene043340 | PPI |
| MS.gene29142 | MS.gene35752 | PPI |
| MS.gene92988 | MS.gene29142 | PPI |
| MS.gene29142 | MS.gene31553 | PPI |
| MS.gene29142 | MS.gene029005 | PPI |
| MS.gene29142 | MS.gene71698 | PPI |
| MS.gene29142 | MS.gene029573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29142.t1 | MTR_5g032550 | 94.798 | 346 | 13 | 2 | 1 | 341 | 1 | 346 | 0.0 | 659 |
| MS.gene29142.t1 | MTR_5g032550 | 95.588 | 272 | 11 | 1 | 1 | 271 | 1 | 272 | 0.0 | 523 |
| MS.gene29142.t1 | MTR_8g068950 | 43.750 | 368 | 170 | 9 | 1 | 333 | 1 | 366 | 1.95e-92 | 280 |
| MS.gene29142.t1 | MTR_3g100710 | 49.861 | 359 | 149 | 10 | 1 | 333 | 1 | 354 | 3.60e-89 | 272 |
| MS.gene29142.t1 | MTR_4g080990 | 44.706 | 340 | 175 | 7 | 1 | 333 | 1 | 334 | 1.81e-86 | 264 |
| MS.gene29142.t1 | MTR_5g065830 | 45.392 | 293 | 141 | 5 | 57 | 331 | 54 | 345 | 2.15e-77 | 241 |
| MS.gene29142.t1 | MTR_3g100710 | 45.125 | 359 | 137 | 11 | 1 | 333 | 1 | 325 | 8.22e-68 | 216 |
| MS.gene29142.t1 | MTR_8g063120 | 39.506 | 243 | 139 | 4 | 53 | 291 | 56 | 294 | 2.76e-48 | 166 |
| MS.gene29142.t1 | MTR_8g063120 | 43.850 | 187 | 105 | 0 | 53 | 239 | 56 | 242 | 3.55e-48 | 164 |
| MS.gene29142.t1 | MTR_1g107535 | 37.736 | 265 | 147 | 4 | 91 | 340 | 107 | 368 | 6.55e-48 | 166 |
| MS.gene29142.t1 | MTR_4g094942 | 32.500 | 320 | 189 | 10 | 11 | 316 | 8 | 314 | 3.10e-44 | 155 |
| MS.gene29142.t1 | MTR_3g102310 | 34.783 | 299 | 159 | 9 | 56 | 331 | 55 | 340 | 1.20e-43 | 154 |
| MS.gene29142.t1 | MTR_5g035360 | 37.991 | 229 | 138 | 2 | 58 | 282 | 44 | 272 | 1.95e-43 | 153 |
| MS.gene29142.t1 | MTR_2g089490 | 31.579 | 266 | 170 | 6 | 68 | 324 | 28 | 290 | 2.96e-32 | 122 |
| MS.gene29142.t1 | MTR_5g015670 | 34.343 | 198 | 121 | 4 | 89 | 281 | 101 | 294 | 2.45e-31 | 121 |
| MS.gene29142.t1 | MTR_2g011500 | 30.493 | 223 | 143 | 5 | 89 | 305 | 82 | 298 | 6.64e-31 | 119 |
| MS.gene29142.t1 | MTR_2g089490 | 30.798 | 263 | 173 | 5 | 68 | 324 | 28 | 287 | 4.62e-30 | 116 |
| MS.gene29142.t1 | MTR_3g103080 | 46.218 | 119 | 63 | 1 | 91 | 209 | 67 | 184 | 1.27e-25 | 105 |
| MS.gene29142.t1 | MTR_4g095790 | 29.808 | 208 | 128 | 6 | 89 | 283 | 66 | 268 | 4.87e-19 | 86.7 |
| MS.gene29142.t1 | MTR_3g088415 | 29.293 | 198 | 128 | 6 | 40 | 236 | 225 | 411 | 9.22e-13 | 69.3 |
| MS.gene29142.t1 | MTR_3g088415 | 29.293 | 198 | 128 | 6 | 40 | 236 | 225 | 411 | 1.28e-12 | 68.9 |
| MS.gene29142.t1 | MTR_3g102520 | 28.736 | 174 | 115 | 6 | 37 | 209 | 75 | 240 | 3.97e-12 | 67.0 |
| MS.gene29142.t1 | MTR_3g088415 | 30.488 | 164 | 108 | 4 | 40 | 203 | 225 | 382 | 1.13e-11 | 65.9 |
| MS.gene29142.t1 | MTR_3g060770 | 31.783 | 129 | 85 | 2 | 73 | 199 | 41 | 168 | 1.24e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29142.t1 | AT5G65420 | 47.734 | 331 | 143 | 9 | 1 | 324 | 1 | 308 | 2.16e-90 | 273 |
| MS.gene29142.t1 | AT5G65420 | 46.334 | 341 | 143 | 10 | 1 | 324 | 1 | 318 | 4.73e-87 | 265 |
| MS.gene29142.t1 | AT5G65420 | 53.386 | 251 | 101 | 5 | 1 | 249 | 1 | 237 | 1.05e-84 | 257 |
| MS.gene29142.t1 | AT5G10440 | 53.815 | 249 | 102 | 4 | 41 | 279 | 12 | 257 | 1.47e-82 | 253 |
| MS.gene29142.t1 | AT2G22490 | 45.277 | 307 | 146 | 5 | 28 | 314 | 26 | 330 | 3.27e-74 | 233 |
| MS.gene29142.t1 | AT5G65420 | 51.293 | 232 | 97 | 5 | 1 | 230 | 1 | 218 | 4.63e-73 | 226 |
| MS.gene29142.t1 | AT2G22490 | 44.805 | 308 | 147 | 6 | 28 | 314 | 26 | 331 | 1.17e-72 | 229 |
| MS.gene29142.t1 | AT5G10440 | 58.101 | 179 | 74 | 1 | 53 | 230 | 31 | 209 | 2.84e-69 | 216 |
| MS.gene29142.t1 | AT1G70210 | 36.986 | 292 | 154 | 7 | 1 | 284 | 12 | 281 | 4.28e-51 | 173 |
| MS.gene29142.t1 | AT3G50070 | 41.475 | 217 | 122 | 2 | 91 | 303 | 86 | 301 | 6.92e-47 | 162 |
| MS.gene29142.t1 | AT5G67260 | 39.189 | 222 | 129 | 2 | 88 | 305 | 93 | 312 | 4.50e-45 | 158 |
| MS.gene29142.t1 | AT5G67260 | 39.189 | 222 | 129 | 2 | 88 | 305 | 93 | 312 | 2.50e-44 | 157 |
| MS.gene29142.t1 | AT4G34160 | 39.109 | 202 | 119 | 1 | 91 | 288 | 87 | 288 | 7.45e-43 | 152 |
| MS.gene29142.t1 | AT4G03270 | 32.103 | 271 | 166 | 10 | 68 | 329 | 35 | 296 | 1.04e-26 | 107 |
| MS.gene29142.t1 | AT4G37630 | 39.490 | 157 | 92 | 3 | 89 | 243 | 70 | 225 | 5.65e-26 | 104 |
| MS.gene29142.t1 | AT4G37630 | 39.623 | 159 | 91 | 4 | 89 | 243 | 70 | 227 | 2.61e-25 | 103 |
| MS.gene29142.t1 | AT4G37630 | 39.610 | 154 | 88 | 4 | 94 | 243 | 75 | 227 | 5.45e-25 | 103 |
| MS.gene29142.t1 | AT4G03270 | 32.103 | 271 | 165 | 11 | 68 | 329 | 35 | 295 | 7.00e-25 | 102 |
| MS.gene29142.t1 | AT5G02110 | 25.328 | 229 | 164 | 4 | 55 | 281 | 42 | 265 | 2.32e-15 | 76.6 |
| MS.gene29142.t1 | AT5G02110 | 28.947 | 152 | 101 | 4 | 132 | 281 | 90 | 236 | 1.79e-12 | 67.8 |
| MS.gene29142.t1 | AT1G77390 | 29.167 | 216 | 139 | 8 | 40 | 251 | 163 | 368 | 2.44e-12 | 68.2 |
| MS.gene29142.t1 | AT4G37490 | 31.214 | 173 | 111 | 5 | 40 | 211 | 149 | 314 | 8.90e-12 | 66.2 |
| MS.gene29142.t1 | AT3G11520 | 31.746 | 126 | 82 | 2 | 85 | 210 | 185 | 306 | 2.12e-11 | 65.1 |
| MS.gene29142.t1 | AT3G11520 | 31.746 | 126 | 82 | 2 | 85 | 210 | 185 | 306 | 2.51e-11 | 64.7 |
Find 68 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCAGGTATTGACTTCT+TGG | 0.185519 | 5.3:+21643007 | MS.gene29142:intron |
| CAACAGGCTCATGCTTATTA+TGG | 0.202944 | 5.3:+21642315 | MS.gene29142:intron |
| CTTCTCACTTGCAGCTAAAA+TGG | 0.203094 | 5.3:+21642554 | MS.gene29142:CDS |
| GGACTACTATGTGAAGAATT+TGG | 0.222114 | 5.3:-21643554 | None:intergenic |
| AGCGGTGGCCATTTCTTTAA+AGG | 0.230204 | 5.3:+21643055 | MS.gene29142:CDS |
| GTATTGACTTCTTGGAATTC+AGG | 0.261158 | 5.3:+21643015 | MS.gene29142:CDS |
| GCTCATGCTTATTATGGATT+TGG | 0.271798 | 5.3:+21642321 | MS.gene29142:CDS |
| GAGAGGCTCTTGATTGGATT+TGG | 0.272878 | 5.3:+21641836 | MS.gene29142:CDS |
| GCCTCAATCTGTAGATTTAC+AGG | 0.274886 | 5.3:+21642590 | MS.gene29142:CDS |
| GATGATGTTGTTGATGGTTC+TGG | 0.309996 | 5.3:+21641628 | MS.gene29142:CDS |
| GTTCTGGAATCTCACCTTCT+TGG | 0.314559 | 5.3:+21641644 | MS.gene29142:CDS |
| TTGTACCTCAAAGCCCTATA+GGG | 0.333615 | 5.3:+21643486 | MS.gene29142:CDS |
| TTCTGGAATCTCACCTTCTT+GGG | 0.334756 | 5.3:+21641645 | MS.gene29142:CDS |
| CTAATGATATTAAGCTCATT+AGG | 0.351519 | 5.3:+21642757 | MS.gene29142:CDS |
| AAGATTGCGTAGTGGTGATT+TGG | 0.353471 | 5.3:+21641798 | MS.gene29142:CDS |
| GATCTTTCCTTGATCAAGAT+TGG | 0.365408 | 5.3:+21643443 | MS.gene29142:CDS |
| ATAGTAGTCCAAATGCTAAA+AGG | 0.376678 | 5.3:+21643567 | MS.gene29142:CDS |
| CCTGCATCAAGAACCCCTAT+AGG | 0.379153 | 5.3:-21643500 | None:intergenic |
| TGATTTCTTCATTGTAGATA+AGG | 0.415109 | 5.3:+21643112 | MS.gene29142:CDS |
| CATTGTGAAGTTCCACTTGA+AGG | 0.419205 | 5.3:-21643605 | None:intergenic |
| TTGCCTATCTGTGAACTACT+TGG | 0.419531 | 5.3:+21642356 | MS.gene29142:CDS |
| TTTGTACCTCAAAGCCCTAT+AGG | 0.422461 | 5.3:+21643485 | MS.gene29142:CDS |
| GCCTTATCAACTTCTTGTGC+TGG | 0.423850 | 5.3:-21643083 | None:intergenic |
| TTAGAAGAGAGGCTCTTGAT+TGG | 0.426958 | 5.3:+21641830 | MS.gene29142:CDS |
| TGGCAGTTCCTTTAAAGAAA+TGG | 0.427409 | 5.3:-21643063 | None:intergenic |
| CTGCATCAAGAACCCCTATA+GGG | 0.428782 | 5.3:-21643499 | None:intergenic |
| GCTAAAAGGATCAAATTTGA+TGG | 0.428970 | 5.3:+21643581 | MS.gene29142:CDS |
| GTATACCCTTGATTATGTTA+AGG | 0.453130 | 5.3:-21642891 | None:intergenic |
| CCTATAGGGGTTCTTGATGC+AGG | 0.456097 | 5.3:+21643500 | MS.gene29142:CDS |
| TGAGGAAATTGTGAAGGTTA+TGG | 0.456594 | 5.3:+21641732 | MS.gene29142:CDS |
| ATTGCCACCAATCTTGATCA+AGG | 0.460300 | 5.3:-21643450 | None:intergenic |
| TACAATGAAGAAATCAGTTA+TGG | 0.468668 | 5.3:-21643105 | None:intergenic |
| AGCTAAAACAATTCAAAGAA+TGG | 0.472457 | 5.3:+21642732 | MS.gene29142:CDS |
| GCTCATCCTTAACATAATCA+AGG | 0.474269 | 5.3:+21642885 | MS.gene29142:CDS |
| GGACCACACAAATGTTAACT+TGG | 0.481111 | 5.3:+21641666 | MS.gene29142:CDS |
| ATAGGGCTTTGAGGTACAAA+TGG | 0.498065 | 5.3:-21643482 | None:intergenic |
| GACTACTTCCTTGCTAAGAT+CGG | 0.500349 | 5.3:+21642817 | MS.gene29142:CDS |
| GCCAGCACAAGAAGTTGATA+AGG | 0.501706 | 5.3:+21643082 | MS.gene29142:CDS |
| GATCCAAGTAGTTCACAGAT+AGG | 0.505367 | 5.3:-21642359 | None:intergenic |
| GGCTCTTGATTGGATTTGGA+AGG | 0.516855 | 5.3:+21641840 | MS.gene29142:CDS |
| CACAGATAGGCAAAGACTCA+AGG | 0.519430 | 5.3:-21642346 | None:intergenic |
| CTTTCCTTGATCAAGATTGG+TGG | 0.528333 | 5.3:+21643446 | MS.gene29142:CDS |
| GAAGGATCATTTGCATAGAG+AGG | 0.536411 | 5.3:+21641765 | MS.gene29142:CDS |
| TTCTGAAATCGCTGCAGCGG+TGG | 0.538599 | 5.3:+21643040 | MS.gene29142:CDS |
| ACCTGTAAATCTACAGATTG+AGG | 0.541543 | 5.3:-21642591 | None:intergenic |
| GCTCATTAGGATGGAAAATG+TGG | 0.544567 | 5.3:+21642770 | MS.gene29142:CDS |
| AGAACCCCTATAGGGCTTTG+AGG | 0.545480 | 5.3:-21643491 | None:intergenic |
| CTATAGGGGTTCTTGATGCA+GGG | 0.546611 | 5.3:+21643501 | MS.gene29142:CDS |
| ACTTGCAGCTAAAATGGAAG+AGG | 0.550041 | 5.3:+21642560 | MS.gene29142:CDS |
| AGCAAGGAAGTAGTCTATGA+AGG | 0.550885 | 5.3:-21642809 | None:intergenic |
| TGATATTAAGCTCATTAGGA+TGG | 0.552715 | 5.3:+21642761 | MS.gene29142:CDS |
| TAACTTGGACAACGTTGGAT+CGG | 0.558747 | 5.3:+21641681 | MS.gene29142:CDS |
| GTCTTCTGAAATCGCTGCAG+CGG | 0.561028 | 5.3:+21643037 | MS.gene29142:CDS |
| AATGTTAACTTGGACAACGT+TGG | 0.568354 | 5.3:+21641676 | MS.gene29142:CDS |
| GGATTTGAGTGTTAGAAGAG+AGG | 0.569462 | 5.3:+21641819 | MS.gene29142:CDS |
| AAATTTGATGGACCTTCAAG+TGG | 0.574775 | 5.3:+21643593 | MS.gene29142:CDS |
| TGTACCTCAAAGCCCTATAG+GGG | 0.578080 | 5.3:+21643487 | MS.gene29142:CDS |
| ACATTTGTGTGGTCCCAAGA+AGG | 0.578876 | 5.3:-21641658 | None:intergenic |
| CTCATCCTTAACATAATCAA+GGG | 0.583650 | 5.3:+21642886 | MS.gene29142:CDS |
| GGTTATGGTTGAGAAAGAGA+AGG | 0.598755 | 5.3:+21641747 | MS.gene29142:CDS |
| ACAAAGTGAGGAAATTGTGA+AGG | 0.612417 | 5.3:+21641726 | MS.gene29142:CDS |
| ACAGATAGGCAAAGACTCAA+GGG | 0.613418 | 5.3:-21642345 | None:intergenic |
| AAGTAGTCTATGAAGGAACA+AGG | 0.614706 | 5.3:-21642802 | None:intergenic |
| TCTCGCAACCGATCTTAGCA+AGG | 0.618158 | 5.3:-21642825 | None:intergenic |
| CTCATTAGGATGGAAAATGT+GGG | 0.625418 | 5.3:+21642771 | MS.gene29142:CDS |
| TGTCCAAGTTAACATTTGTG+TGG | 0.630293 | 5.3:-21641669 | None:intergenic |
| ATGTTCAGAGAGGTGTGACT+TGG | 0.635092 | 5.3:+21642505 | MS.gene29142:intron |
| TATTTGATAAGATTGCGTAG+TGG | 0.700846 | 5.3:+21641790 | MS.gene29142:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTCACATTTTTTTTTT+TGG | - | chr5.3:21642008-21642027 | None:intergenic | 10.0% |
| !! | AAAAAACCAAAATTCAAATA+AGG | - | chr5.3:21642207-21642226 | None:intergenic | 15.0% |
| !! | CAATGAAAATTAGAACTTTA+TGG | - | chr5.3:21641894-21641913 | None:intergenic | 20.0% |
| !!! | AAAGTTCTAATTTTCATTGA+AGG | + | chr5.3:21641895-21641914 | MS.gene29142:intron | 20.0% |
| !!! | AAGTTCTAATTTTCATTGAA+GGG | + | chr5.3:21641896-21641915 | MS.gene29142:intron | 20.0% |
| !!! | TTCTTAATTGATTTCCATTT+TGG | + | chr5.3:21642176-21642195 | MS.gene29142:intron | 20.0% |
| ! | AATTACACAATTAACGATCT+TGG | - | chr5.3:21643212-21643231 | None:intergenic | 25.0% |
| ! | AGCTAAAACAATTCAAAGAA+TGG | + | chr5.3:21642732-21642751 | MS.gene29142:CDS | 25.0% |
| ! | CTAATGATATTAAGCTCATT+AGG | + | chr5.3:21642757-21642776 | MS.gene29142:CDS | 25.0% |
| ! | CTCAATCTTGTATTGTAATT+GGG | + | chr5.3:21642255-21642274 | MS.gene29142:intron | 25.0% |
| ! | GTCTTCTGATATGAAATTAA+TGG | + | chr5.3:21643235-21643254 | MS.gene29142:intron | 25.0% |
| ! | TACAATGAAGAAATCAGTTA+TGG | - | chr5.3:21643108-21643127 | None:intergenic | 25.0% |
| ! | TATTTGATATTCGATCTTAC+CGG | - | chr5.3:21642408-21642427 | None:intergenic | 25.0% |
| ! | TGATTTCTTCATTGTAGATA+AGG | + | chr5.3:21643112-21643131 | MS.gene29142:CDS | 25.0% |
| !! | AATTTGATCCTTTTAGCATT+TGG | - | chr5.3:21643578-21643597 | None:intergenic | 25.0% |
| !! | GTTTTTCATTGAGGTTTAAT+TGG | + | chr5.3:21642103-21642122 | MS.gene29142:intron | 25.0% |
| !!! | GTTCATCCTTATTTGAATTT+TGG | + | chr5.3:21642198-21642217 | MS.gene29142:intron | 25.0% |
| !!! | TCAAAAGTGTGTTTTTTATG+TGG | + | chr5.3:21642032-21642051 | MS.gene29142:intron | 25.0% |
| !!! | TTCTTTGAATTGTTTTAGCT+TGG | - | chr5.3:21642732-21642751 | None:intergenic | 25.0% |
| ATAGTAGTCCAAATGCTAAA+AGG | + | chr5.3:21643567-21643586 | MS.gene29142:CDS | 30.0% | |
| ATCAATTAGTATGCAATGTC+TGG | + | chr5.3:21642081-21642100 | MS.gene29142:intron | 30.0% | |
| ATGAGATTCTTAACTAAGTG+TGG | + | chr5.3:21641953-21641972 | MS.gene29142:intron | 30.0% | |
| CAAATAAGGATGAACCAAAA+TGG | - | chr5.3:21642193-21642212 | None:intergenic | 30.0% | |
| CCAATTACAATACAAGATTG+AGG | - | chr5.3:21642257-21642276 | None:intergenic | 30.0% | |
| CCTCAATCTTGTATTGTAAT+TGG | + | chr5.3:21642254-21642273 | MS.gene29142:intron | 30.0% | |
| CTCATCCTTAACATAATCAA+GGG | + | chr5.3:21642886-21642905 | MS.gene29142:CDS | 30.0% | |
| GAAACATGATATCAAACACA+AGG | - | chr5.3:21643372-21643391 | None:intergenic | 30.0% | |
| GATCAGAGTAATTGAAAAAC+CGG | - | chr5.3:21642454-21642473 | None:intergenic | 30.0% | |
| GCTAAAAGGATCAAATTTGA+TGG | + | chr5.3:21643581-21643600 | MS.gene29142:CDS | 30.0% | |
| GTATACCCTTGATTATGTTA+AGG | - | chr5.3:21642894-21642913 | None:intergenic | 30.0% | |
| TAAGAACAATGTAGTACACA+AGG | - | chr5.3:21642947-21642966 | None:intergenic | 30.0% | |
| TATTTGATAAGATTGCGTAG+TGG | + | chr5.3:21641790-21641809 | MS.gene29142:CDS | 30.0% | |
| TGATATTAAGCTCATTAGGA+TGG | + | chr5.3:21642761-21642780 | MS.gene29142:CDS | 30.0% | |
| TGTGTACTACATTGTTCTTA+AGG | + | chr5.3:21642947-21642966 | MS.gene29142:intron | 30.0% | |
| ! | TCTTGCAATCAATGACTTTT+CGG | - | chr5.3:21642857-21642876 | None:intergenic | 30.0% |
| !! | CATTGATATTGATAATGCAC+AGG | + | chr5.3:21642684-21642703 | MS.gene29142:intron | 30.0% |
| !! | CCTATCTGTTTTTCAATTAC+CGG | + | chr5.3:21642386-21642405 | MS.gene29142:CDS | 30.0% |
| !!! | TGTTTTGATGATGTTGTTGA+TGG | + | chr5.3:21641622-21641641 | MS.gene29142:CDS | 30.0% |
| AAGTAGTCTATGAAGGAACA+AGG | - | chr5.3:21642805-21642824 | None:intergenic | 35.0% | |
| AATTAACGATCTTGGCCATT+TGG | - | chr5.3:21643204-21643223 | None:intergenic | 35.0% | |
| ACAAAGTGAGGAAATTGTGA+AGG | + | chr5.3:21641726-21641745 | MS.gene29142:CDS | 35.0% | |
| ACATGCCATACACAACAATT+AGG | - | chr5.3:21642489-21642508 | None:intergenic | 35.0% | |
| ACCTGTAAATCTACAGATTG+AGG | - | chr5.3:21642594-21642613 | None:intergenic | 35.0% | |
| CAATTACTCTGATCTCTTGT+TGG | + | chr5.3:21642460-21642479 | MS.gene29142:intron | 35.0% | |
| CCGGTAATTGAAAAACAGAT+AGG | - | chr5.3:21642389-21642408 | None:intergenic | 35.0% | |
| CTCATTAGGATGGAAAATGT+GGG | + | chr5.3:21642771-21642790 | MS.gene29142:CDS | 35.0% | |
| CTTTCTGTAATGTGATCAAC+AGG | + | chr5.3:21642299-21642318 | MS.gene29142:intron | 35.0% | |
| GATCTTTCCTTGATCAAGAT+TGG | + | chr5.3:21643443-21643462 | MS.gene29142:CDS | 35.0% | |
| GCTCATCCTTAACATAATCA+AGG | + | chr5.3:21642885-21642904 | MS.gene29142:CDS | 35.0% | |
| GCTCATGCTTATTATGGATT+TGG | + | chr5.3:21642321-21642340 | MS.gene29142:CDS | 35.0% | |
| GGACTACTATGTGAAGAATT+TGG | - | chr5.3:21643557-21643576 | None:intergenic | 35.0% | |
| GTACAATTCAATTGCATTGC+AGG | + | chr5.3:21642993-21643012 | MS.gene29142:intron | 35.0% | |
| TCTTCATTGTAGATAAGGTG+AGG | + | chr5.3:21643117-21643136 | MS.gene29142:intron | 35.0% | |
| TGAGGAAATTGTGAAGGTTA+TGG | + | chr5.3:21641732-21641751 | MS.gene29142:CDS | 35.0% | |
| TGTCCAAGTTAACATTTGTG+TGG | - | chr5.3:21641672-21641691 | None:intergenic | 35.0% | |
| TTTCCTTTGTTGAATTGTGC+AGG | + | chr5.3:21643388-21643407 | MS.gene29142:intron | 35.0% | |
| ! | AAATTTGATGGACCTTCAAG+TGG | + | chr5.3:21643593-21643612 | MS.gene29142:CDS | 35.0% |
| ! | AATGTTAACTTGGACAACGT+TGG | + | chr5.3:21641676-21641695 | MS.gene29142:CDS | 35.0% |
| ! | AGTTTGCTTGTGTTCTTTAC+CGG | + | chr5.3:21642432-21642451 | MS.gene29142:intron | 35.0% |
| ! | CTACATGTGGTAATGAATCT+CGG | - | chr5.3:21643261-21643280 | None:intergenic | 35.0% |
| ! | CTTGCAATCAATGACTTTTC+GGG | - | chr5.3:21642856-21642875 | None:intergenic | 35.0% |
| ! | TGCTTGCTCAACTAATTTTG+TGG | + | chr5.3:21642140-21642159 | MS.gene29142:intron | 35.0% |
| ! | TGGCAGTTCCTTTAAAGAAA+TGG | - | chr5.3:21643066-21643085 | None:intergenic | 35.0% |
| !! | ATGTTTTGTTGCACAAAGTG+AGG | + | chr5.3:21641714-21641733 | MS.gene29142:CDS | 35.0% |
| !! | GATATTGATAATGCACAGGT+TGG | + | chr5.3:21642688-21642707 | MS.gene29142:intron | 35.0% |
| !! | GTATTGACTTCTTGGAATTC+AGG | + | chr5.3:21643015-21643034 | MS.gene29142:CDS | 35.0% |
| !!! | CAATGTCTGGTTTTTCATTG+AGG | + | chr5.3:21642094-21642113 | MS.gene29142:intron | 35.0% |
| !!! | CTTGCTCACTGTTTTTATGT+GGG | - | chr5.3:21643318-21643337 | None:intergenic | 35.0% |
| !!! | TCTTGCTCACTGTTTTTATG+TGG | - | chr5.3:21643319-21643338 | None:intergenic | 35.0% |
| !!! | TGCATGAGTTTTAAGAGTGA+TGG | + | chr5.3:21643524-21643543 | MS.gene29142:CDS | 35.0% |
| AAGATTGCGTAGTGGTGATT+TGG | + | chr5.3:21641798-21641817 | MS.gene29142:CDS | 40.0% | |
| ACAGATAGGCAAAGACTCAA+GGG | - | chr5.3:21642348-21642367 | None:intergenic | 40.0% | |
| ACATGTAGAACTTCTACCAC+AGG | + | chr5.3:21643273-21643292 | MS.gene29142:intron | 40.0% | |
| ACTTGCAGCTAAAATGGAAG+AGG | + | chr5.3:21642560-21642579 | MS.gene29142:CDS | 40.0% | |
| AGCAAGGAAGTAGTCTATGA+AGG | - | chr5.3:21642812-21642831 | None:intergenic | 40.0% | |
| ATTGCCACCAATCTTGATCA+AGG | - | chr5.3:21643453-21643472 | None:intergenic | 40.0% | |
| CAACAGGCTCATGCTTATTA+TGG | + | chr5.3:21642315-21642334 | MS.gene29142:intron | 40.0% | |
| CATGTAGAACTTCTACCACA+GGG | + | chr5.3:21643274-21643293 | MS.gene29142:intron | 40.0% | |
| CATTGTGAAGTTCCACTTGA+AGG | - | chr5.3:21643608-21643627 | None:intergenic | 40.0% | |
| CTTCTCACTTGCAGCTAAAA+TGG | + | chr5.3:21642554-21642573 | MS.gene29142:CDS | 40.0% | |
| CTTGATTGGATTTGGAAGGT+TGG | + | chr5.3:21641844-21641863 | MS.gene29142:intron | 40.0% | |
| CTTTCCTTGATCAAGATTGG+TGG | + | chr5.3:21643446-21643465 | MS.gene29142:CDS | 40.0% | |
| GAAGGATCATTTGCATAGAG+AGG | + | chr5.3:21641765-21641784 | MS.gene29142:CDS | 40.0% | |
| GACTACTTCCTTGCTAAGAT+CGG | + | chr5.3:21642817-21642836 | MS.gene29142:CDS | 40.0% | |
| GATCCAAGTAGTTCACAGAT+AGG | - | chr5.3:21642362-21642381 | None:intergenic | 40.0% | |
| GCCTCAATCTGTAGATTTAC+AGG | + | chr5.3:21642590-21642609 | MS.gene29142:CDS | 40.0% | |
| GCTCATTAGGATGGAAAATG+TGG | + | chr5.3:21642770-21642789 | MS.gene29142:CDS | 40.0% | |
| GGAAGCCTAATTGTTGTGTA+TGG | + | chr5.3:21642481-21642500 | MS.gene29142:intron | 40.0% | |
| GGACCACACAAATGTTAACT+TGG | + | chr5.3:21641666-21641685 | MS.gene29142:CDS | 40.0% | |
| GGATTTGAGTGTTAGAAGAG+AGG | + | chr5.3:21641819-21641838 | MS.gene29142:CDS | 40.0% | |
| GGTTATGGTTGAGAAAGAGA+AGG | + | chr5.3:21641747-21641766 | MS.gene29142:CDS | 40.0% | |
| TAACTTGGACAACGTTGGAT+CGG | + | chr5.3:21641681-21641700 | MS.gene29142:CDS | 40.0% | |
| TCTCCTGCACAATTCAACAA+AGG | - | chr5.3:21643394-21643413 | None:intergenic | 40.0% | |
| TCTTGGCCATTTGGATTCAA+CGG | - | chr5.3:21643195-21643214 | None:intergenic | 40.0% | |
| TGTGGTAGAAGTTCTACATG+TGG | - | chr5.3:21643274-21643293 | None:intergenic | 40.0% | |
| TTAGAAGAGAGGCTCTTGAT+TGG | + | chr5.3:21641830-21641849 | MS.gene29142:CDS | 40.0% | |
| TTGCCTATCTGTGAACTACT+TGG | + | chr5.3:21642356-21642375 | MS.gene29142:CDS | 40.0% | |
| TTGTACCTCAAAGCCCTATA+GGG | + | chr5.3:21643486-21643505 | MS.gene29142:CDS | 40.0% | |
| TTGTGTGTAATTCCCGGAAA+TGG | + | chr5.3:21643140-21643159 | MS.gene29142:intron | 40.0% | |
| TTTGTACCTCAAAGCCCTAT+AGG | + | chr5.3:21643485-21643504 | MS.gene29142:CDS | 40.0% | |
| ! | AATTCCCGGAAATGGATTCT+CGG | + | chr5.3:21643148-21643167 | MS.gene29142:intron | 40.0% |
| !! | ATAGGGCTTTGAGGTACAAA+TGG | - | chr5.3:21643485-21643504 | None:intergenic | 40.0% |
| !! | CATTGCAGGTATTGACTTCT+TGG | + | chr5.3:21643007-21643026 | MS.gene29142:intron | 40.0% |
| !! | GATGATGTTGTTGATGGTTC+TGG | + | chr5.3:21641628-21641647 | MS.gene29142:CDS | 40.0% |
| !! | TTCTGGAATCTCACCTTCTT+GGG | + | chr5.3:21641645-21641664 | MS.gene29142:CDS | 40.0% |
| !!! | CTGTTTTTATGTGGGAACCA+TGG | - | chr5.3:21643310-21643329 | None:intergenic | 40.0% |
| AACTTCTACCACAGGGAATC+CGG | + | chr5.3:21643281-21643300 | MS.gene29142:intron | 45.0% | |
| ACATTTGTGTGGTCCCAAGA+AGG | - | chr5.3:21641661-21641680 | None:intergenic | 45.0% | |
| AGCGGTGGCCATTTCTTTAA+AGG | + | chr5.3:21643055-21643074 | MS.gene29142:CDS | 45.0% | |
| ATAGCCGAGAATCCATTTCC+GGG | - | chr5.3:21643155-21643174 | None:intergenic | 45.0% | |
| CACAGATAGGCAAAGACTCA+AGG | - | chr5.3:21642349-21642368 | None:intergenic | 45.0% | |
| CATAGCCGAGAATCCATTTC+CGG | - | chr5.3:21643156-21643175 | None:intergenic | 45.0% | |
| CTATAGGGGTTCTTGATGCA+GGG | + | chr5.3:21643501-21643520 | MS.gene29142:CDS | 45.0% | |
| CTGCATCAAGAACCCCTATA+GGG | - | chr5.3:21643502-21643521 | None:intergenic | 45.0% | |
| GAGAGGCTCTTGATTGGATT+TGG | + | chr5.3:21641836-21641855 | MS.gene29142:CDS | 45.0% | |
| GCCTTATCAACTTCTTGTGC+TGG | - | chr5.3:21643086-21643105 | None:intergenic | 45.0% | |
| GGCTCTTGATTGGATTTGGA+AGG | + | chr5.3:21641840-21641859 | MS.gene29142:CDS | 45.0% | |
| GTGAGGTTGTGTGTAATTCC+CGG | + | chr5.3:21643134-21643153 | MS.gene29142:intron | 45.0% | |
| TCTCGACCGTTGAATCCAAA+TGG | + | chr5.3:21643186-21643205 | MS.gene29142:intron | 45.0% | |
| TGTACCTCAAAGCCCTATAG+GGG | + | chr5.3:21643487-21643506 | MS.gene29142:CDS | 45.0% | |
| TGTGTATGGCATGTTCAGAG+AGG | + | chr5.3:21642495-21642514 | MS.gene29142:intron | 45.0% | |
| ! | ATGTTCAGAGAGGTGTGACT+TGG | + | chr5.3:21642505-21642524 | MS.gene29142:intron | 45.0% |
| !! | GCCAGCACAAGAAGTTGATA+AGG | + | chr5.3:21643082-21643101 | MS.gene29142:CDS | 45.0% |
| !! | GTTCTGGAATCTCACCTTCT+TGG | + | chr5.3:21641644-21641663 | MS.gene29142:CDS | 45.0% |
| ACTTCTACCACAGGGAATCC+GGG | + | chr5.3:21643282-21643301 | MS.gene29142:intron | 50.0% | |
| AGAACCCCTATAGGGCTTTG+AGG | - | chr5.3:21643494-21643513 | None:intergenic | 50.0% | |
| CCTATAGGGGTTCTTGATGC+AGG | + | chr5.3:21643500-21643519 | MS.gene29142:CDS | 50.0% | |
| CCTGCATCAAGAACCCCTAT+AGG | - | chr5.3:21643503-21643522 | None:intergenic | 50.0% | |
| TCTCGCAACCGATCTTAGCA+AGG | - | chr5.3:21642828-21642847 | None:intergenic | 50.0% | |
| !! | GTCTTCTGAAATCGCTGCAG+CGG | + | chr5.3:21643037-21643056 | MS.gene29142:CDS | 50.0% |
| CTTCTACCACAGGGAATCCG+GGG | + | chr5.3:21643283-21643302 | MS.gene29142:intron | 55.0% | |
| TATGTGGGAACCATGGACCC+CGG | - | chr5.3:21643303-21643322 | None:intergenic | 55.0% | |
| !! | TTCTGAAATCGCTGCAGCGG+TGG | + | chr5.3:21643040-21643059 | MS.gene29142:CDS | 55.0% |
| CACAGGGAATCCGGGGTCCA+TGG | + | chr5.3:21643290-21643309 | MS.gene29142:intron | 65.0% | |
| CATGGACCCCGGATTCCCTG+TGG | - | chr5.3:21643292-21643311 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 21641562 | 21643628 | 21641562 | ID=MS.gene29142 |
| chr5.3 | mRNA | 21641562 | 21643628 | 21641562 | ID=MS.gene29142.t1;Parent=MS.gene29142 |
| chr5.3 | exon | 21641562 | 21641861 | 21641562 | ID=MS.gene29142.t1.exon1;Parent=MS.gene29142.t1 |
| chr5.3 | CDS | 21641562 | 21641861 | 21641562 | ID=cds.MS.gene29142.t1;Parent=MS.gene29142.t1 |
| chr5.3 | exon | 21642321 | 21642407 | 21642321 | ID=MS.gene29142.t1.exon2;Parent=MS.gene29142.t1 |
| chr5.3 | CDS | 21642321 | 21642407 | 21642321 | ID=cds.MS.gene29142.t1;Parent=MS.gene29142.t1 |
| chr5.3 | exon | 21642513 | 21642611 | 21642513 | ID=MS.gene29142.t1.exon3;Parent=MS.gene29142.t1 |
| chr5.3 | CDS | 21642513 | 21642611 | 21642513 | ID=cds.MS.gene29142.t1;Parent=MS.gene29142.t1 |
| chr5.3 | exon | 21642706 | 21642907 | 21642706 | ID=MS.gene29142.t1.exon4;Parent=MS.gene29142.t1 |
| chr5.3 | CDS | 21642706 | 21642907 | 21642706 | ID=cds.MS.gene29142.t1;Parent=MS.gene29142.t1 |
| chr5.3 | exon | 21643015 | 21643133 | 21643015 | ID=MS.gene29142.t1.exon5;Parent=MS.gene29142.t1 |
| chr5.3 | CDS | 21643015 | 21643133 | 21643015 | ID=cds.MS.gene29142.t1;Parent=MS.gene29142.t1 |
| chr5.3 | exon | 21643410 | 21643628 | 21643410 | ID=MS.gene29142.t1.exon6;Parent=MS.gene29142.t1 |
| chr5.3 | CDS | 21643410 | 21643628 | 21643410 | ID=cds.MS.gene29142.t1;Parent=MS.gene29142.t1 |
| Gene Sequence |
| Protein sequence |
