AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29600.t1 MTR_5g081860 98.155 271 5 0 1 271 1 271 0.0 558
MS.gene29600.t1 MTR_7g067080 62.150 214 72 2 3 209 11 222 1.40e-89 268
MS.gene29600.t1 MTR_5g069710 60.891 202 72 3 2 198 4 203 6.68e-84 254
MS.gene29600.t1 MTR_3g462790 63.819 199 59 4 16 203 27 223 1.86e-82 250
MS.gene29600.t1 MTR_1g111830 50.538 186 80 4 25 204 22 201 1.38e-55 179
MS.gene29600.t1 MTR_8g063600 48.634 183 92 1 20 202 3 183 1.93e-50 167
MS.gene29600.t1 MTR_4g111975 42.381 210 81 5 27 201 8 212 6.18e-47 159
MS.gene29600.t1 MTR_8g063870 45.506 178 83 2 25 202 6 169 7.59e-42 145
MS.gene29600.t1 MTR_2g100930 61.111 90 33 1 120 209 104 191 1.67e-29 114
MS.gene29600.t1 MTR_6g092540 69.863 73 20 1 119 191 91 161 8.17e-29 111
MS.gene29600.t1 MTR_4g100630 64.198 81 27 1 120 200 90 168 7.86e-28 109
MS.gene29600.t1 MTR_4g015130 71.429 70 18 1 134 203 2 69 9.36e-28 102
MS.gene29600.t1 MTR_8g101650 60.714 84 30 1 116 199 96 176 7.88e-27 105
MS.gene29600.t1 MTR_5g037080 60.000 90 34 1 112 201 89 176 9.10e-26 103
MS.gene29600.t1 MTR_4g107230 71.186 59 17 0 113 171 72 130 1.24e-24 100
MS.gene29600.t1 MTR_5g027570 60.256 78 27 1 119 192 82 159 2.68e-23 95.5
MS.gene29600.t1 MTR_5g088010 58.904 73 29 1 121 192 56 128 5.25e-23 94.7
MS.gene29600.t1 MTR_1g033600 39.695 131 65 3 25 142 10 139 6.32e-23 91.7
MS.gene29600.t1 MTR_3g104370 51.429 105 44 4 90 191 58 158 1.16e-22 93.6
MS.gene29600.t1 MTR_5g088060 58.025 81 32 2 113 192 261 340 1.20e-21 94.0
MS.gene29600.t1 MTR_5g488160 58.025 81 32 2 113 192 261 340 1.20e-21 94.0
MS.gene29600.t1 MTR_1g033620 70.968 62 16 1 141 202 21 80 2.35e-21 90.5
MS.gene29600.t1 MTR_1g022290 55.882 68 30 0 22 89 2 69 5.23e-21 85.1
MS.gene29600.t1 MTR_0036s0260 57.971 69 27 1 125 193 28 94 2.98e-20 86.7
MS.gene29600.t1 MTR_2g090305 57.971 69 27 1 125 193 28 94 8.61e-20 84.7
MS.gene29600.t1 MTR_3g111880 53.846 65 30 0 25 89 5 69 1.94e-19 81.3
MS.gene29600.t1 MTR_6g004250 52.941 68 32 0 22 89 5 72 1.10e-18 78.6
MS.gene29600.t1 MTR_5g027550 58.904 73 29 1 121 192 73 145 1.58e-18 82.4
MS.gene29600.t1 MTR_3g070110 40.764 157 79 6 48 196 21 171 1.79e-18 82.0
MS.gene29600.t1 MTR_7g089210 52.941 68 32 0 30 97 15 82 5.86e-18 77.0
MS.gene29600.t1 MTR_5g075760 33.000 200 119 7 26 218 12 203 6.88e-18 80.5
MS.gene29600.t1 MTR_5g020170 45.333 75 41 0 15 89 7 81 1.98e-17 75.9
MS.gene29600.t1 MTR_3g116720 52.381 63 30 0 27 89 16 78 1.98e-17 75.5
MS.gene29600.t1 MTR_3g013440 47.945 73 37 1 18 89 1 73 1.36e-16 73.6
MS.gene29600.t1 MTR_1g048660 53.030 66 29 1 126 191 13 76 1.72e-16 73.2
MS.gene29600.t1 MTR_5g075790 30.000 200 124 5 26 218 21 211 3.66e-16 75.9
MS.gene29600.t1 MTR_8g077360 49.231 65 32 1 25 89 3 66 2.83e-15 69.3
MS.gene29600.t1 MTR_8g077380 49.231 65 32 1 25 89 3 66 2.84e-15 69.3
MS.gene29600.t1 MTR_8g077390 49.231 65 32 1 25 89 3 66 2.84e-15 69.3
MS.gene29600.t1 MTR_8g077420 50.820 61 29 1 27 87 5 64 5.97e-14 65.9
MS.gene29600.t1 MTR_5g020540 50.820 61 29 1 27 87 4 63 3.14e-13 63.5
MS.gene29600.t1 MTR_1g083180 55.714 70 29 2 127 195 63 131 3.54e-13 66.6
MS.gene29600.t1 MTR_3g111920 41.270 63 37 0 27 89 3 65 9.22e-13 62.8
MS.gene29600.t1 MTR_6g043490 41.026 78 41 2 125 197 107 184 6.11e-12 64.3
MS.gene29600.t1 MTR_6g043480 53.191 47 22 0 125 171 107 153 7.14e-12 63.9
MS.gene29600.t1 MTR_8g072990 50.000 50 25 0 122 171 97 146 1.06e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29600.t1 AT2G38090 59.716 211 69 2 3 199 5 213 5.57e-86 259
MS.gene29600.t1 AT3G11280 59.910 222 70 6 3 212 1 215 1.28e-80 244
MS.gene29600.t1 AT3G11280 59.910 222 70 6 3 212 1 215 1.28e-80 244
MS.gene29600.t1 AT5G05790 55.947 227 90 5 3 222 4 227 1.05e-78 239
MS.gene29600.t1 AT5G05790 55.947 227 90 5 3 222 4 227 1.05e-78 239
MS.gene29600.t1 AT5G58900 58.216 213 68 5 16 210 15 224 7.14e-77 235
MS.gene29600.t1 AT5G01200 54.067 209 73 6 6 196 12 215 6.39e-67 209
MS.gene29600.t1 AT5G08520 51.087 184 80 2 27 202 12 193 9.92e-54 176
MS.gene29600.t1 AT1G49010 45.050 202 81 4 21 194 2 201 1.32e-49 166
MS.gene29600.t1 AT5G04760 43.333 210 89 7 25 231 4 186 3.85e-46 154
MS.gene29600.t1 AT5G23650 42.654 211 89 5 20 215 6 199 5.11e-44 152
MS.gene29600.t1 AT3G10580 37.379 206 101 6 27 231 8 186 4.16e-35 127
MS.gene29600.t1 AT3G10580 37.379 206 101 6 27 231 8 186 8.87e-35 127
MS.gene29600.t1 AT4G09450 42.515 167 80 4 26 192 6 156 1.09e-31 116
MS.gene29600.t1 AT5G47390 66.250 80 25 1 112 191 83 160 1.22e-27 109
MS.gene29600.t1 AT5G56840 63.415 82 29 1 120 201 86 166 1.29e-27 106
MS.gene29600.t1 AT5G61620 67.568 74 22 1 119 192 102 173 1.53e-26 105
MS.gene29600.t1 AT1G19000 51.327 113 48 3 112 219 89 199 3.92e-25 101
MS.gene29600.t1 AT1G19000 51.327 113 48 3 112 219 89 199 3.92e-25 101
MS.gene29600.t1 AT3G16350 55.238 105 42 2 116 217 125 227 6.55e-25 102
MS.gene29600.t1 AT1G70000 72.131 61 17 0 112 172 85 145 7.03e-25 100
MS.gene29600.t1 AT1G70000 72.131 61 17 0 112 172 85 145 7.03e-25 100
MS.gene29600.t1 AT3G10590 42.222 180 79 11 27 192 7 175 1.14e-23 95.5
MS.gene29600.t1 AT1G74840 75.000 52 13 0 120 171 91 142 5.80e-22 92.0
MS.gene29600.t1 AT1G74840 75.000 52 13 0 120 171 91 142 8.20e-22 92.0
MS.gene29600.t1 AT1G75250 55.556 63 28 0 27 89 12 74 6.81e-18 78.2
MS.gene29600.t1 AT1G75250 55.556 63 28 0 27 89 12 74 6.82e-18 77.0
MS.gene29600.t1 AT4G39250 48.485 66 34 0 27 92 14 79 1.56e-17 76.3
MS.gene29600.t1 AT2G21650 47.761 67 35 0 27 93 14 80 4.32e-16 72.4
MS.gene29600.t1 AT2G18328 54.098 61 27 1 29 89 14 73 4.30e-14 66.2
MS.gene29600.t1 AT1G19510 51.724 58 28 0 32 89 17 74 4.86e-13 64.3
MS.gene29600.t1 AT3G10595 29.054 148 81 5 24 171 3 126 2.89e-12 64.3

Find 53 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCCTATGCAGCAGAAAA+TGG 0.222210 5.2:+69881326 MS.gene29600:CDS
TATGCTAAGCTGAAAGTTTC+GGG 0.251091 5.2:+69881423 MS.gene29600:CDS
TCGGGTTTCGCGACAGCTTC+TGG 0.263182 5.2:+69881441 MS.gene29600:CDS
CTGATGGGACTTCTAAAGTA+TGG 0.266546 5.2:+69881096 MS.gene29600:CDS
ACCAGGAATCGGAACATTTC+CGG 0.268577 5.2:-69879452 None:intergenic
GCCGGAAATGTTCCGATTCC+TGG 0.317971 5.2:+69879451 MS.gene29600:CDS
TTATGCTAAGCTGAAAGTTT+CGG 0.326332 5.2:+69881422 MS.gene29600:CDS
CTTCTCTACTCCATTCTGTT+TGG 0.332735 5.2:-69879279 None:intergenic
AGGAGACACATTGACTAATA+AGG 0.335368 5.2:-69881310 None:intergenic
ACATAAAATAAGGAGAATAA+AGG 0.337256 5.2:-69879225 None:intergenic
TGTGATTTAAGGTATGGATT+TGG 0.345223 5.2:+69879198 None:intergenic
TGATGTGATTAAGCAGTATA+GGG 0.364968 5.2:+69879399 MS.gene29600:CDS
AGAAGGCATGTGACTGTTAG+AGG 0.384719 5.2:+69879535 MS.gene29600:CDS
AAGATTGCTGAGATGATTCC+TGG 0.391655 5.2:+69879364 MS.gene29600:CDS
TTGATGTGATTAAGCAGTAT+AGG 0.399334 5.2:+69879398 MS.gene29600:CDS
TTTGTATCCAACATAAAATA+AGG 0.405866 5.2:-69879235 None:intergenic
ATAAGGCAAAAGGTTTCTTC+TGG 0.415949 5.2:+69881204 MS.gene29600:CDS
GCAATCTTAAGCCATCTATC+TGG 0.417904 5.2:-69879349 None:intergenic
TAAAGTATGGCAAAGGCGAC+TGG 0.439380 5.2:+69881109 MS.gene29600:CDS
CATAAAATAAGGAGAATAAA+GGG 0.445828 5.2:-69879224 None:intergenic
GATTAAGCAGTATAGGGAAT+TGG 0.449715 5.2:+69879405 MS.gene29600:CDS
GCATGACTTGCTACTTGTGT+TGG 0.455619 5.2:-69881168 None:intergenic
TGCTCTTGCTATATATGATA+AGG 0.457525 5.2:+69879321 MS.gene29600:CDS
ATAAGGATACACCAGATAGA+TGG 0.475384 5.2:+69879338 MS.gene29600:CDS
ATGCACAAAAGTACTACATA+AGG 0.480834 5.2:+69881187 MS.gene29600:CDS
AGAGGAAGAAAGGTGTTCCT+TGG 0.489408 5.2:+69879569 MS.gene29600:CDS
AAAGTACTACATAAGGCAAA+AGG 0.510073 5.2:+69881194 MS.gene29600:CDS
AATAAGGACTTGTTATCTGA+TGG 0.512003 5.2:-69881294 None:intergenic
GAGGCAAGATAACCAGGAAT+CGG 0.520347 5.2:-69879463 None:intergenic
TGATGGATCACCACAAGGGC+AGG 0.524353 5.2:+69881371 MS.gene29600:CDS
TCTCCTATGCAGCAGAAAAT+GGG 0.535185 5.2:+69881327 MS.gene29600:CDS
AGTACTAGCCACTACAATGA+TGG 0.540673 5.2:+69881354 MS.gene29600:CDS
TCTGATCATGAGAGGAAGAA+AGG 0.544690 5.2:+69879559 MS.gene29600:CDS
AAAGAAGAGGCAAGATAACC+AGG 0.552310 5.2:-69879469 None:intergenic
AAGAGAGTTACCAAACAGAA+TGG 0.556624 5.2:+69879269 MS.gene29600:CDS
AGGCAAAAGGTTTCTTCTGG+AGG 0.582472 5.2:+69881207 MS.gene29600:CDS
ACTATGATGGAAACAGAAGA+AGG 0.582942 5.2:+69879518 MS.gene29600:CDS
TCATAGAGATCCTGCCCTTG+TGG 0.585420 5.2:-69881381 None:intergenic
CTTGGACTGAAGAGGAACAT+AGG 0.585629 5.2:+69879587 MS.gene29600:CDS
CTATGTTCCTCTTCAGTCCA+AGG 0.586053 5.2:-69879586 None:intergenic
CTATGCAGCAGAAAATGGGT+TGG 0.587490 5.2:+69881331 MS.gene29600:CDS
AGGTGTTCCTTGGACTGAAG+AGG 0.592742 5.2:+69879579 MS.gene29600:CDS
GCTTCTGGAGATTTCAACAA+AGG 0.599003 5.2:+69881456 MS.gene29600:CDS
GTTGTGATATCATGAATGCT+TGG 0.600782 5.2:-69881246 None:intergenic
GATGTGAGTGAAATTGAGGC+CGG 0.613302 5.2:+69879433 MS.gene29600:CDS
AACTTCAAAGGTGAAAGAAG+AGG 0.617592 5.2:-69879482 None:intergenic
TACAATGATGGATCACCACA+AGG 0.622159 5.2:+69881366 MS.gene29600:CDS
ACATCAATAACAGTCTTACC+AGG 0.630015 5.2:-69879382 None:intergenic
TTAGAGGTTCTGATCATGAG+AGG 0.633143 5.2:+69879551 MS.gene29600:CDS
GTGGTGATCCATCATTGTAG+TGG 0.633599 5.2:-69881362 None:intergenic
AGAAGATGTGAGTGAAATTG+AGG 0.635385 5.2:+69879429 MS.gene29600:CDS
GGACTTCTAAAGTATGGCAA+AGG 0.636983 5.2:+69881102 MS.gene29600:CDS
ACAATGATGGATCACCACAA+GGG 0.720384 5.2:+69881367 MS.gene29600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAACATATAATTTTTTTTA+AGG + chr5.2:69879981-69880000 MS.gene29600:intron 10.0%
!!! TTTTTTTTTTAAAAGAACAT+AGG + chr5.2:69880113-69880132 MS.gene29600:intron 10.0%
!! AAATTAAAAACCTAAAATCT+AGG - chr5.2:69880701-69880720 None:intergenic 15.0%
!!! AATAACAAGTAACTTTTAAA+CGG - chr5.2:69881030-69881049 None:intergenic 15.0%
!!! TTATATGTTGTTTTTATTCA+AGG - chr5.2:69879972-69879991 None:intergenic 15.0%
!! ACATAAAATAAGGAGAATAA+AGG - chr5.2:69879228-69879247 None:intergenic 20.0%
!! CATAAAATAAGGAGAATAAA+GGG - chr5.2:69879227-69879246 None:intergenic 20.0%
!! TTTGTATCCAACATAAAATA+AGG - chr5.2:69879238-69879257 None:intergenic 20.0%
!!! ATAACAAGTAACTTTTAAAC+GGG - chr5.2:69881029-69881048 None:intergenic 20.0%
!!! ATTTCATTTTCCTAGATTTT+AGG + chr5.2:69880688-69880707 MS.gene29600:intron 20.0%
!!! ATTTTATGTTGGATACAAAT+TGG + chr5.2:69879239-69879258 MS.gene29600:CDS 20.0%
!!! TTATTCTCCTTATTTTATGT+TGG + chr5.2:69879228-69879247 MS.gene29600:CDS 20.0%
! AAAAGACAATTGAAGATTCT+AGG - chr5.2:69879626-69879645 None:intergenic 25.0%
! AAGATTGAGGAGAAATAAAA+AGG + chr5.2:69880385-69880404 MS.gene29600:intron 25.0%
! AGAGACGGAAAAAATAAAAT+TGG + chr5.2:69879745-69879764 MS.gene29600:intron 25.0%
! ATTGACATGTTAAATTGAGT+TGG + chr5.2:69880984-69881003 MS.gene29600:intron 25.0%
! TTCGAAAAACAAAACTATGA+TGG + chr5.2:69879505-69879524 MS.gene29600:CDS 25.0%
!! TAACAAGTAACTTTTAAACG+GGG - chr5.2:69881028-69881047 None:intergenic 25.0%
!! TATTTCCGACTCTTTTTAAA+CGG + chr5.2:69880896-69880915 MS.gene29600:intron 25.0%
!!! ATGTTAAATTGAGTTGGTTT+AGG + chr5.2:69880990-69881009 MS.gene29600:intron 25.0%
!!! TTGTTTTACTCTTTTCTCTA+TGG + chr5.2:69879654-69879673 MS.gene29600:intron 25.0%
!!! TTGTTTTTCGAAAACTTCAA+AGG - chr5.2:69879497-69879516 None:intergenic 25.0%
AAAAACTCTTTGTGCATGAT+TGG + chr5.2:69881051-69881070 MS.gene29600:intron 30.0%
AAGAGAGAATAAAAACAGGT+GGG - chr5.2:69880419-69880438 None:intergenic 30.0%
AATTTGAGTCTGTAACACTT+AGG + chr5.2:69879774-69879793 MS.gene29600:intron 30.0%
ACGATTGTAAACTCGAAAAT+TGG - chr5.2:69880186-69880205 None:intergenic 30.0%
AGAAATAGAGTAGATTTGAC+GGG + chr5.2:69879871-69879890 MS.gene29600:intron 30.0%
AGTATCACATTTCTCTTGTT+TGG - chr5.2:69880459-69880478 None:intergenic 30.0%
ATGTAGCACAATTACAATTG+AGG - chr5.2:69880852-69880871 None:intergenic 30.0%
ATTGAGGAGAAATAAAAAGG+TGG + chr5.2:69880388-69880407 MS.gene29600:intron 30.0%
ATTTGAGTCTGTAACACTTA+GGG + chr5.2:69879775-69879794 MS.gene29600:intron 30.0%
CAGCTAATGAATCATATTCA+TGG + chr5.2:69880637-69880656 MS.gene29600:intron 30.0%
GAAAGTTAGAAGAGAGAAAT+AGG + chr5.2:69879816-69879835 MS.gene29600:intron 30.0%
GAGAAATAGAGTAGATTTGA+CGG + chr5.2:69879870-69879889 MS.gene29600:intron 30.0%
GCATAACTTGATCATTAGTT+TGG + chr5.2:69880918-69880937 MS.gene29600:intron 30.0%
TGATGTGATTAAGCAGTATA+GGG + chr5.2:69879399-69879418 MS.gene29600:CDS 30.0%
TGTGAAGAGAGAATAAAAAC+AGG - chr5.2:69880423-69880442 None:intergenic 30.0%
TTATGCTAAGCTGAAAGTTT+CGG + chr5.2:69881422-69881441 MS.gene29600:CDS 30.0%
TTGATGTGATTAAGCAGTAT+AGG + chr5.2:69879398-69879417 MS.gene29600:CDS 30.0%
! AAAGTACTACATAAGGCAAA+AGG + chr5.2:69881194-69881213 MS.gene29600:CDS 30.0%
! TGCTCTTGCTATATATGATA+AGG + chr5.2:69879321-69879340 MS.gene29600:CDS 30.0%
! TTATGCCGTTTAAAAAGAGT+CGG - chr5.2:69880904-69880923 None:intergenic 30.0%
!! AATAAGGACTTGTTATCTGA+TGG - chr5.2:69881297-69881316 None:intergenic 30.0%
!! ATGCACAAAAGTACTACATA+AGG + chr5.2:69881187-69881206 MS.gene29600:CDS 30.0%
!! GTAAACTCGAAAATTGGTTT+TGG - chr5.2:69880180-69880199 None:intergenic 30.0%
!!! AGTTTTTTCTTAGATTGTGG+AGG + chr5.2:69879678-69879697 MS.gene29600:intron 30.0%
!!! GGAAGTTTTTTCTTAGATTG+TGG + chr5.2:69879675-69879694 MS.gene29600:intron 30.0%
AACTTCAAAGGTGAAAGAAG+AGG - chr5.2:69879485-69879504 None:intergenic 35.0%
AAGAGAGTTACCAAACAGAA+TGG + chr5.2:69879269-69879288 MS.gene29600:CDS 35.0%
ACATCAATAACAGTCTTACC+AGG - chr5.2:69879385-69879404 None:intergenic 35.0%
ACCAAACATAGTGTTAACGA+TGG + chr5.2:69880528-69880547 MS.gene29600:intron 35.0%
AGAAAGATGAGAGAAGTGAT+TGG - chr5.2:69880361-69880380 None:intergenic 35.0%
AGAAGATGTGAGTGAAATTG+AGG + chr5.2:69879429-69879448 MS.gene29600:CDS 35.0%
AGGAGAAATAAAAAGGTGGT+AGG + chr5.2:69880392-69880411 MS.gene29600:intron 35.0%
AGTAAGACAGAAGTTAGAGA+CGG + chr5.2:69879730-69879749 MS.gene29600:intron 35.0%
ATAAGGATACACCAGATAGA+TGG + chr5.2:69879338-69879357 MS.gene29600:CDS 35.0%
ATAAGGCAAAAGGTTTCTTC+TGG + chr5.2:69881204-69881223 MS.gene29600:CDS 35.0%
ATCATACACGCGTGTTATAA+TGG - chr5.2:69880239-69880258 None:intergenic 35.0%
ATGCCATTGCAATTTCACAT+TGG - chr5.2:69880319-69880338 None:intergenic 35.0%
GAAGAGAGAATAAAAACAGG+TGG - chr5.2:69880420-69880439 None:intergenic 35.0%
GATTAAGCAGTATAGGGAAT+TGG + chr5.2:69879405-69879424 MS.gene29600:CDS 35.0%
GGAGAAATAAAAAGGTGGTA+GGG + chr5.2:69880393-69880412 MS.gene29600:intron 35.0%
GTTGTGATATCATGAATGCT+TGG - chr5.2:69881249-69881268 None:intergenic 35.0%
TATGCTAAGCTGAAAGTTTC+GGG + chr5.2:69881423-69881442 MS.gene29600:CDS 35.0%
TCCATCGTTAACACTATGTT+TGG - chr5.2:69880532-69880551 None:intergenic 35.0%
TTGCCAATGTGAAATTGCAA+TGG + chr5.2:69880313-69880332 MS.gene29600:intron 35.0%
TTTGTGCATGATTGGAATCA+CGG + chr5.2:69881059-69881078 MS.gene29600:intron 35.0%
! ACTATGATGGAAACAGAAGA+AGG + chr5.2:69879518-69879537 MS.gene29600:CDS 35.0%
! AGGAGACACATTGACTAATA+AGG - chr5.2:69881313-69881332 None:intergenic 35.0%
! GTAACTTTTAAACGGGGTAA+AGG - chr5.2:69881022-69881041 None:intergenic 35.0%
! TTCGAGTTTACAATCGTTGT+TGG + chr5.2:69880189-69880208 MS.gene29600:intron 35.0%
!! TTCAACAAAGGAGCTGTTTT+TGG + chr5.2:69881468-69881487 MS.gene29600:CDS 35.0%
AAAGAAGAGGCAAGATAACC+AGG - chr5.2:69879472-69879491 None:intergenic 40.0%
AAGATTGCTGAGATGATTCC+TGG + chr5.2:69879364-69879383 MS.gene29600:CDS 40.0%
AGTACTAGCCACTACAATGA+TGG + chr5.2:69881354-69881373 MS.gene29600:CDS 40.0%
CATCTTTCTTCGCAAGATTG+AGG + chr5.2:69880372-69880391 MS.gene29600:intron 40.0%
CTTCTCTACTCCATTCTGTT+TGG - chr5.2:69879282-69879301 None:intergenic 40.0%
GCAATCTTAAGCCATCTATC+TGG - chr5.2:69879352-69879371 None:intergenic 40.0%
TCTCCTATGCAGCAGAAAAT+GGG + chr5.2:69881327-69881346 MS.gene29600:CDS 40.0%
TCTGATCATGAGAGGAAGAA+AGG + chr5.2:69879559-69879578 MS.gene29600:CDS 40.0%
TGCAATTTCACATTGGCAAG+AGG - chr5.2:69880312-69880331 None:intergenic 40.0%
TGTAACACTTAGGGTGTGTT+TGG + chr5.2:69879784-69879803 MS.gene29600:intron 40.0%
! CTATGACTGCTCTTTTCATG+AGG + chr5.2:69881398-69881417 MS.gene29600:CDS 40.0%
! GCATACAGACGTTTTCTGAT+GGG + chr5.2:69881081-69881100 MS.gene29600:intron 40.0%
! GCTTCTGGAGATTTCAACAA+AGG + chr5.2:69881456-69881475 MS.gene29600:CDS 40.0%
! TACAATCGTTGTTGGTTAGC+AGG + chr5.2:69880197-69880216 MS.gene29600:intron 40.0%
! TTAGAGGTTCTGATCATGAG+AGG + chr5.2:69879551-69879570 MS.gene29600:CDS 40.0%
!! ACAATGATGGATCACCACAA+GGG + chr5.2:69881367-69881386 MS.gene29600:CDS 40.0%
!! AGTAGATTTGACGGGTTGTT+TGG + chr5.2:69879879-69879898 MS.gene29600:intron 40.0%
!! CTGATGGGACTTCTAAAGTA+TGG + chr5.2:69881096-69881115 MS.gene29600:CDS 40.0%
!! GGACTTCTAAAGTATGGCAA+AGG + chr5.2:69881102-69881121 MS.gene29600:CDS 40.0%
!! TACAATGATGGATCACCACA+AGG + chr5.2:69881366-69881385 MS.gene29600:CDS 40.0%
ACCAGGAATCGGAACATTTC+CGG - chr5.2:69879455-69879474 None:intergenic 45.0%
AGGCAAAAGGTTTCTTCTGG+AGG + chr5.2:69881207-69881226 MS.gene29600:CDS 45.0%
CTATGCAGCAGAAAATGGGT+TGG + chr5.2:69881331-69881350 MS.gene29600:CDS 45.0%
CTATGTTCCTCTTCAGTCCA+AGG - chr5.2:69879589-69879608 None:intergenic 45.0%
CTTGGACTGAAGAGGAACAT+AGG + chr5.2:69879587-69879606 MS.gene29600:CDS 45.0%
GAAATAGGTGAGAGAGAGTG+TGG + chr5.2:69879831-69879850 MS.gene29600:intron 45.0%
GAGGCAAGATAACCAGGAAT+CGG - chr5.2:69879466-69879485 None:intergenic 45.0%
GATGTGAGTGAAATTGAGGC+CGG + chr5.2:69879433-69879452 MS.gene29600:CDS 45.0%
GTCTCCTATGCAGCAGAAAA+TGG + chr5.2:69881326-69881345 MS.gene29600:CDS 45.0%
GTGGTGATCCATCATTGTAG+TGG - chr5.2:69881365-69881384 None:intergenic 45.0%
TAAAGTATGGCAAAGGCGAC+TGG + chr5.2:69881109-69881128 MS.gene29600:CDS 45.0%
! AGAAGGCATGTGACTGTTAG+AGG + chr5.2:69879535-69879554 MS.gene29600:CDS 45.0%
! CAACCCATTTTCTGCTGCAT+AGG - chr5.2:69881333-69881352 None:intergenic 45.0%
! GGCATACAGACGTTTTCTGA+TGG + chr5.2:69881080-69881099 MS.gene29600:intron 45.0%
!! AGAGGAAGAAAGGTGTTCCT+TGG + chr5.2:69879569-69879588 MS.gene29600:CDS 45.0%
!! GCATGACTTGCTACTTGTGT+TGG - chr5.2:69881171-69881190 None:intergenic 45.0%
AGGTGTTCCTTGGACTGAAG+AGG + chr5.2:69879579-69879598 MS.gene29600:CDS 50.0%
TCATAGAGATCCTGCCCTTG+TGG - chr5.2:69881384-69881403 None:intergenic 50.0%
GCCGGAAATGTTCCGATTCC+TGG + chr5.2:69879451-69879470 MS.gene29600:CDS 55.0%
! TGATGGATCACCACAAGGGC+AGG + chr5.2:69881371-69881390 MS.gene29600:CDS 55.0%
TCGGGTTTCGCGACAGCTTC+TGG + chr5.2:69881441-69881460 MS.gene29600:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 69879211 69881506 69879211 ID=MS.gene29600
chr5.2 mRNA 69879211 69881506 69879211 ID=MS.gene29600.t1;Parent=MS.gene29600
chr5.2 exon 69879211 69879608 69879211 ID=MS.gene29600.t1.exon1;Parent=MS.gene29600.t1
chr5.2 CDS 69879211 69879608 69879211 ID=cds.MS.gene29600.t1;Parent=MS.gene29600.t1
chr5.2 exon 69881089 69881506 69881089 ID=MS.gene29600.t1.exon2;Parent=MS.gene29600.t1
chr5.2 CDS 69881089 69881506 69881089 ID=cds.MS.gene29600.t1;Parent=MS.gene29600.t1
Gene Sequence

>MS.gene29600

ATGGATTTGGAAACCCTTTATTCTCCTTATTTTATGTTGGATACAAATTGGCTTGTTGAAGAGAGTTACCAAACAGAATGGAGTAGAGAAGATAACAAGAAGTTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGCTTAAGATTGCTGAGATGATTCCTGGTAAGACTGTTATTGATGTGATTAAGCAGTATAGGGAATTGGTAGAAGATGTGAGTGAAATTGAGGCCGGAAATGTTCCGATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAAGTTTTCGAAAAACAAAACTATGATGGAAACAGAAGAAGGCATGTGACTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGGTGAGTTTCATCAACCTAGAATCTTCAATTGTCTTTTTGTTTTTGTTGTTTTACTCTTTTCTCTATGGAAGTTTTTTCTTAGATTGTGGAGGAAGAAAATCTATACTACTAGAAAAATTGAAGTAAGACAGAAGTTAGAGACGGAAAAAATAAAATTGGTCACAAAATTTGAGTCTGTAACACTTAGGGTGTGTTTGGTTGTGAGAAGAAAGTTAGAAGAGAGAAATAGGTGAGAGAGAGTGTGGTAAGAGAGAAATATATGAGAAATAGAGTAGATTTGACGGGTTGTTTGGTATAAGAGAAAGAAGAGAGAAATAGAAGAGAAAGAGATGCTGCTATATTTTGAAAAGACTAAAAAATCCTTGAATAAAAACAACATATAATTTTTTTTAAGGAAAAACAACATATAATTTATGATTGATTAATTTACTTTTTGTACAAATTAAATTAATTTATTAGTTTGATATAATTAATTTTTTTAATTTAAATTTTTATAAACTTAGTTTTTTTTTTTAAAAGAACATAGGTTAATTTACTTTAAATTAATTTAACGTGTATTATATGTTTTCCAAAACCAATTTTCGAGTTTACAATCGTTGTTGGTTAGCAGGTAGCAGCTACTCAGTTCCATTATAACACGCGTGTATGATGTGTTGCAAACTTTTATTTAAAAAAAAAAAGTGTTGTAAATTGTACTATGCCTCTTGCCAATGTGAAATTGCAATGGCATAAACGTAAATTTGCTCACTCCAATCACTTCTCTCATCTTTCTTCGCAAGATTGAGGAGAAATAAAAAGGTGGTAGGGCCCACCTGTTTTTATTCTCTCTTCACAATTTCTTTGCTATCCAAACAAGAGAAATGTGATACTTCTCTTCTATTTCTCTCTTCACTAACTCTCTCTTCTCTAATTCTCTTCTACCAAACATAGTGTTAACGATGGAGTTAGAGATGAATTTCTCTTCTTTTTTTTCATCTCAAGATTTCTGTCGCTATTTCAGTTTTTCTAGTAGTATTGATATTGAAATTCAGCTAATGAATCATATTCATGGATATACTTAAATAGCAACTCAATTTTTCATTTCATTTTCCTAGATTTTAGGTTTTTAATTTCTCATACAATTCTAATCGACATTTATAATAGCTGACTTGTTAATCTAGTGAAATATTTCGATTTTAGTCACAGTCACGTTGCGATCTTTGAGATTGCGAAAAATCACAATCACATGCAGAAGATGCAGCCTCAATTGTAATTGTGCTACATTTTTAAAGACGTCAAAAAATTTGATATTTCCGACTCTTTTTAAACGGCATAACTTGATCATTAGTTTGGATAAGTATATTAAATTTTGAACTTCAAGCAAAAGCACAAATCAATTGACATGTTAAATTGAGTTGGTTTAGGAGTTTGCCTTTACCCCGTTTAAAAGTTACTTGTTATTGAAAAACTCTTTGTGCATGATTGGAATCACGGCATACAGACGTTTTCTGATGGGACTTCTAAAGTATGGCAAAGGCGACTGGAGAAACATCTCGCGCAATTTCGTCGTGACAAAGACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTTCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGATATCACAACTGTTACTCTCACAGAAACTTCTTCTCCATCAGATAACAAGTCCTTATTAGTCAATGTGTCTCCTATGCAGCAGAAAATGGGTTGGAGTACTAGCCACTACAATGATGGATCACCACAAGGGCAGGATCTCTATGACTGCTCTTTTCATGAGGCTTATGCTAAGCTGAAAGTTTCGGGTTTCGCGACAGCTTCTGGAGATTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTGTAA
Protein sequence

>MS.gene29600.t1

MDLETLYSPYFMLDTNWLVEESYQTEWSREDNKKFESALAIYDKDTPDRWLKIAEMIPGKTVIDVIKQYRELVEDVSEIEAGNVPIPGYLASSFTFEVFEKQNYDGNRRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSPSDNKSLLVNVSPMQQKMGWSTSHYNDGSPQGQDLYDCSFHEAYAKLKVSGFATASGDFNKGAVFGIHAL