AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061188


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061188.t1 MTR_5g081550 98.104 422 8 0 1 422 1 422 0.0 857
MS.gene061188.t1 MTR_3g069720 71.494 435 104 6 1 416 1 434 0.0 625
MS.gene061188.t1 MTR_1g022075 52.865 384 161 9 1 378 1 370 2.20e-136 396
MS.gene061188.t1 MTR_3g111790 52.713 387 159 10 1 378 8 379 1.73e-135 394
MS.gene061188.t1 MTR_5g019880 50.524 382 164 7 1 373 10 375 1.40e-132 386
MS.gene061188.t1 MTR_1g106875 43.627 408 210 7 14 419 74 463 4.55e-113 340
MS.gene061188.t1 MTR_1g018620 47.950 317 157 2 58 374 113 421 3.82e-108 327
MS.gene061188.t1 MTR_3g102670 46.906 307 155 2 68 374 93 391 2.34e-103 313
MS.gene061188.t1 MTR_6g445110 42.473 372 194 5 14 373 17 380 3.34e-99 301
MS.gene061188.t1 MTR_1g054670 41.562 320 167 5 58 376 50 350 8.00e-83 258
MS.gene061188.t1 MTR_7g109880 60.256 78 23 3 3 72 125 202 1.17e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061188.t1 AT5G05840 62.061 427 142 6 1 408 1 426 0.0 518
MS.gene061188.t1 AT3G55720 53.472 432 177 10 1 409 1 431 2.17e-146 424
MS.gene061188.t1 AT5G66740 50.526 380 169 6 1 374 1 367 1.91e-132 385
MS.gene061188.t1 AT1G75160 51.621 401 162 8 1 377 3 395 4.20e-132 385
MS.gene061188.t1 AT3G19540 49.684 316 150 2 59 374 129 435 2.98e-108 328
MS.gene061188.t1 AT1G49840 41.063 414 223 6 6 409 78 480 1.55e-107 326
MS.gene061188.t1 AT1G27690 43.717 382 198 6 6 378 41 414 2.28e-106 321
MS.gene061188.t1 AT1G79420 38.718 390 207 10 13 376 19 402 4.29e-92 284
MS.gene061188.t1 AT5G06610 37.466 371 203 9 14 376 4 353 9.07e-79 248

Find 98 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAGAGTTGGTGGTTTC+TGG 0.051533 5.1:+63759976 MS.gene061188:CDS
CTGAAACTGAATCTATATTT+TGG 0.075141 5.1:+63761829 MS.gene061188:CDS
GATGATCTTGATTCACTATT+TGG 0.153365 5.1:-63759263 None:intergenic
GGCATCATTCGCATGCTTCT+AGG 0.261802 5.1:+63760052 MS.gene061188:CDS
TTGAAGAGAGATGAAGAAAA+AGG 0.287471 5.1:+63762062 MS.gene061188:CDS
GAACCAAAAGTCCCGTTCTT+TGG 0.288761 5.1:-63761770 None:intergenic
CTTCTATACTTACAATGTTA+TGG 0.298201 5.1:-63759403 None:intergenic
ATCATCACTCGGAACATTAA+AGG 0.303398 5.1:+63759380 MS.gene061188:CDS
CAGCCAAAGAACGGGACTTT+TGG 0.303793 5.1:+63761767 MS.gene061188:CDS
CCATGTGGTTCCACTCTTGT+TGG 0.309635 5.1:-63759216 None:intergenic
TAATATTAAAGGGTTGTCTT+TGG 0.310573 5.1:+63762016 MS.gene061188:CDS
TTGTTGGTGAAAATATCTTC+TGG 0.344725 5.1:-63759200 None:intergenic
TAGCACATTGTGGGAAAACT+TGG 0.371373 5.1:+63761907 MS.gene061188:CDS
AGAGTTTGTGGTAGGGGAAG+GGG 0.373912 5.1:+63759855 MS.gene061188:CDS
AGTAGTAACATAGAAATAAT+TGG 0.376252 5.1:+63761723 MS.gene061188:CDS
CAAGGCCATCCTCATGATAA+AGG 0.376628 5.1:-63759154 None:intergenic
CACATCAATAGCAGCTACTT+TGG 0.378200 5.1:-63762153 None:intergenic
GCATCATTCGCATGCTTCTA+GGG 0.389492 5.1:+63760053 MS.gene061188:CDS
AAAAGTTGAATATTTGTGTT+TGG 0.391721 5.1:-63759299 None:intergenic
GTTTAGAGTTGGTGGTTTCT+GGG 0.395885 5.1:+63759977 MS.gene061188:CDS
GGTGGATATGAAAGAAGAGT+TGG 0.398116 5.1:+63759915 MS.gene061188:CDS
GCCACTTAAACGTTTACTTC+AGG 0.407710 5.1:+63760086 MS.gene061188:CDS
CTTGTCCTTGAATGATTCTC+AGG 0.407841 5.1:-63761957 None:intergenic
TGGGTCACTTTATCAAGGTT+TGG 0.410083 5.1:+63761927 MS.gene061188:CDS
AACTCTAAACACCACAATTC+TGG 0.410084 5.1:-63759964 None:intergenic
AATAGATTGGCAGTGGACTT+TGG 0.412063 5.1:-63761603 None:intergenic
GGACAAGTATAAATGAGGTT+TGG 0.421027 5.1:+63761973 MS.gene061188:CDS
TTTAATGTTCCGAGTGATGA+TGG 0.425423 5.1:-63759378 None:intergenic
GGCTACTTCAGCCAAAGAAC+GGG 0.437173 5.1:+63761759 MS.gene061188:CDS
GGTTTGTACTCATTAGTGAT+AGG 0.438302 5.1:-63759356 None:intergenic
ACCTGAAGTAAACGTTTAAG+TGG 0.449339 5.1:-63760087 None:intergenic
TGTTGGTGAAAATATCTTCT+GGG 0.457944 5.1:-63759199 None:intergenic
TACTCATTAGTGATAGGAAA+AGG 0.467257 5.1:-63759350 None:intergenic
GTGATAGGAAAAGGAATCAA+TGG 0.469817 5.1:-63759341 None:intergenic
TGTTGAGTTGTTGAATAGAT+TGG 0.471791 5.1:-63761616 None:intergenic
ATTGTGGTGTTTAGAGTTGG+TGG 0.473766 5.1:+63759969 MS.gene061188:CDS
CAGAGTTTGTGGTAGGGGAA+GGG 0.478274 5.1:+63759854 MS.gene061188:CDS
AAACTTGGGTCACTTTATCA+AGG 0.484471 5.1:+63761922 MS.gene061188:CDS
CATACAAGACTATAGAATAG+TGG 0.484564 5.1:+63761872 MS.gene061188:CDS
AATAGGTACCTCAGAGTTTG+TGG 0.486835 5.1:+63759843 MS.gene061188:CDS
AAAATTAGTGCAGGGAGTGA+TGG 0.488027 5.1:+63760003 MS.gene061188:CDS
GAACTTCTAGCACAGTTTCA+AGG 0.494000 5.1:-63759172 None:intergenic
GATGGTGAAGAAAGTGAAGA+AGG 0.494517 5.1:+63759894 MS.gene061188:CDS
AAATGAGGTTTGGAAAATTG+AGG 0.496792 5.1:+63761983 MS.gene061188:CDS
GAGTTTGTGGTAGGGGAAGG+GGG 0.497184 5.1:+63759856 MS.gene061188:CDS
GTGGATATGAAAGAAGAGTT+GGG 0.501576 5.1:+63759916 MS.gene061188:CDS
TTCAAGGACAAGTATAAATG+AGG 0.502582 5.1:+63761968 MS.gene061188:CDS
TCTGGGTACAAAATTAGTGC+AGG 0.503450 5.1:+63759994 MS.gene061188:CDS
TCAGAGTTTGTGGTAGGGGA+AGG 0.507152 5.1:+63759853 MS.gene061188:CDS
ACTTCTTGTTTGTAATGAAG+TGG 0.507830 5.1:-63761700 None:intergenic
GCCATCCTCATGATAAAGGT+TGG 0.509678 5.1:-63759150 None:intergenic
TACCTCAGAGTTTGTGGTAG+GGG 0.512855 5.1:+63759849 MS.gene061188:CDS
AGTAAACGTTTAAGTGGCCT+AGG 0.518850 5.1:-63760081 None:intergenic
CCATCCTCATGATAAAGGTT+GGG 0.519135 5.1:-63759149 None:intergenic
GTATTCAAATAGCACATTGT+GGG 0.530481 5.1:+63761898 MS.gene061188:CDS
AAAACAATATGTTGCAGCTG+TGG 0.532218 5.1:+63759765 MS.gene061188:CDS
GTTGAAAGTATGTATGCAAT+GGG 0.538137 5.1:+63759811 MS.gene061188:CDS
CCCAACCTTTATCATGAGGA+TGG 0.540030 5.1:+63759149 MS.gene061188:CDS
GCAATGGGTGAAGTGAGAAT+AGG 0.542727 5.1:+63759826 MS.gene061188:CDS
TTAATGTTCCGAGTGATGAT+GGG 0.547777 5.1:-63759377 None:intergenic
TGCAGGGAGTGATGGAAAAG+TGG 0.552240 5.1:+63760011 MS.gene061188:CDS
GTGATGGAAAAGTGGCTTGG+AGG 0.553808 5.1:+63760019 MS.gene061188:CDS
GTGAAAATATCTTCTGGGAT+GGG 0.555387 5.1:-63759194 None:intergenic
AGAATTGTGGTGTTTAGAGT+TGG 0.558165 5.1:+63759966 MS.gene061188:CDS
TTGCTTCATGTTCTTCCATG+TGG 0.558177 5.1:-63759231 None:intergenic
GGAGTGATGGAAAAGTGGCT+TGG 0.558565 5.1:+63760016 MS.gene061188:CDS
AGGCTACTTCAGCCAAAGAA+CGG 0.558907 5.1:+63761758 MS.gene061188:CDS
GGTGAAGAAAGTGAAGAAGG+TGG 0.561830 5.1:+63759897 MS.gene061188:CDS
GGGTGTGAATAGCAAGAAGA+TGG 0.564348 5.1:+63759876 MS.gene061188:CDS
GTTGTTGAATAGATTGGCAG+TGG 0.565381 5.1:-63761610 None:intergenic
TTGTCCCAACCTTTATCATG+AGG 0.572543 5.1:+63759145 MS.gene061188:CDS
GGTGAAAATATCTTCTGGGA+TGG 0.575300 5.1:-63759195 None:intergenic
AAGGACCTGAGAATCATTCA+AGG 0.576245 5.1:+63761952 MS.gene061188:CDS
GGTACCTCAGAGTTTGTGGT+AGG 0.581374 5.1:+63759847 MS.gene061188:CDS
AAACAATATGTTGCAGCTGT+GGG 0.581917 5.1:+63759766 MS.gene061188:CDS
TGTTGAAAGTATGTATGCAA+TGG 0.588575 5.1:+63759810 MS.gene061188:CDS
GGTATTCAAATAGCACATTG+TGG 0.592853 5.1:+63761897 MS.gene061188:CDS
TCATCTCTCTTCAAATCACT+AGG 0.595333 5.1:-63762053 None:intergenic
TGGCTTGGAGGCAAACACCT+TGG 0.599300 5.1:+63760031 MS.gene061188:CDS
CAAAGTAGCTGCTATTGATG+TGG 0.599483 5.1:+63762154 MS.gene061188:CDS
AGCACATTGTGGGAAAACTT+GGG 0.600682 5.1:+63761908 MS.gene061188:CDS
ACTTTATCAAGGTTTGGTGA+AGG 0.603544 5.1:+63761933 MS.gene061188:CDS
CAATATGTTGCAGCTGTGGG+AGG 0.604968 5.1:+63759769 MS.gene061188:CDS
CATGGAAGAACATGAAGCAA+TGG 0.606163 5.1:+63759234 MS.gene061188:CDS
GTACCTCAGAGTTTGTGGTA+GGG 0.607485 5.1:+63759848 MS.gene061188:CDS
CTGGGTACAAAATTAGTGCA+GGG 0.608598 5.1:+63759995 MS.gene061188:CDS
CATCATTCGCATGCTTCTAG+GGG 0.611771 5.1:+63760054 MS.gene061188:CDS
TTCAACAACTCAACATGCAT+AGG 0.619833 5.1:+63761624 MS.gene061188:CDS
CAAGACTATAGAATAGTGGA+TGG 0.626381 5.1:+63761876 MS.gene061188:CDS
ATGCTTCTAGGGGTCCACCT+AGG 0.627986 5.1:+63760064 MS.gene061188:CDS
CCAACAAGAGTGGAACCACA+TGG 0.640059 5.1:+63759216 MS.gene061188:CDS
GAAGCATGCGAATGATGCCA+AGG 0.650253 5.1:-63760048 None:intergenic
TCTCTCTTCAAATCACTAGG+AGG 0.655690 5.1:-63762050 None:intergenic
AGTACAAACCCATCATCACT+CGG 0.661995 5.1:+63759369 MS.gene061188:CDS
TTCCCCTACCACAAACTCTG+AGG 0.664595 5.1:-63759851 None:intergenic
AAACGTTTAAGTGGCCTAGG+TGG 0.667507 5.1:-63760078 None:intergenic
GATATGAAAGAAGAGTTGGG+AGG 0.679988 5.1:+63759919 MS.gene061188:CDS
GGCAAAAGAGACCAGAATTG+TGG 0.686509 5.1:+63759953 MS.gene061188:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAACAAAAAATATAAGTT+TGG + chr5.1:63760716-63760735 MS.gene061188:intron 10.0%
!! TTGAATAAAAAAAATATTGA+AGG + chr5.1:63759635-63759654 MS.gene061188:intron 10.0%
!!! AAGTTGATTTTAATATTAAA+GGG + chr5.1:63762006-63762025 MS.gene061188:CDS 10.0%
!!! TCATTTTATTTTTATAACAA+TGG + chr5.1:63760329-63760348 MS.gene061188:intron 10.0%
!!! AAAATAATATGAGGAAATTT+TGG + chr5.1:63761288-63761307 MS.gene061188:intron 15.0%
!!! AAATAATATGAGGAAATTTT+GGG + chr5.1:63761289-63761308 MS.gene061188:intron 15.0%
!!! ATAATTTTTATGTGTTTTGA+AGG + chr5.1:63759717-63759736 MS.gene061188:intron 15.0%
!!! GAAGTTGATTTTAATATTAA+AGG + chr5.1:63762005-63762024 MS.gene061188:CDS 15.0%
!!! TTCTCAAAATTTTATCTAAA+TGG + chr5.1:63759590-63759609 MS.gene061188:intron 15.0%
!!! TTTTGTCTAATTAAAAATTG+TGG - chr5.1:63759485-63759504 None:intergenic 15.0%
!! AAAAGTTGAATATTTGTGTT+TGG - chr5.1:63759302-63759321 None:intergenic 20.0%
!! AGTAGTAACATAGAAATAAT+TGG + chr5.1:63761723-63761742 MS.gene061188:CDS 20.0%
!! ATTTCCATGAAAAAACAATT+TGG - chr5.1:63760842-63760861 None:intergenic 20.0%
!!! AAATAGCTTTAAGAAATAGT+TGG + chr5.1:63760425-63760444 MS.gene061188:intron 20.0%
!!! AATAATATGAGGAAATTTTG+GGG + chr5.1:63761290-63761309 MS.gene061188:intron 20.0%
!!! AATAGTTGGCAAATTTTAAT+TGG + chr5.1:63760439-63760458 MS.gene061188:intron 20.0%
!!! AGATTTTAGTTTAATCAAGT+TGG - chr5.1:63761808-63761827 None:intergenic 20.0%
!!! ATTATTGTCTTAATTTGAAC+AGG + chr5.1:63761572-63761591 MS.gene061188:intron 20.0%
!!! ATTTCCAAATTGTTTTTTCA+TGG + chr5.1:63760835-63760854 MS.gene061188:intron 20.0%
!!! CTAGTTTTGAAAATAATATG+AGG + chr5.1:63761279-63761298 MS.gene061188:intron 20.0%
!!! TGAAACTGAATCTATATTTT+GGG + chr5.1:63761830-63761849 MS.gene061188:CDS 20.0%
!!! TTAATGTTACGTTTTCAAAT+TGG + chr5.1:63760382-63760401 MS.gene061188:intron 20.0%
!!! TTATTGTCTTAATTTGAACA+GGG + chr5.1:63761573-63761592 MS.gene061188:intron 20.0%
! ACAATTTAATAGCTAATGCA+AGG + chr5.1:63760912-63760931 MS.gene061188:intron 25.0%
! CTATGATACACTTATTTGAA+TGG - chr5.1:63761214-63761233 None:intergenic 25.0%
! CTTCTATACTTACAATGTTA+TGG - chr5.1:63759406-63759425 None:intergenic 25.0%
! GTATAATGCATATCAAAAGA+GGG + chr5.1:63761426-63761445 MS.gene061188:intron 25.0%
! TAATATTAAAGGGTTGTCTT+TGG + chr5.1:63762016-63762035 MS.gene061188:CDS 25.0%
! TATAATGCATATCAAAAGAG+GGG + chr5.1:63761427-63761446 MS.gene061188:intron 25.0%
! TTATGAATTTAAGAAACTCG+TGG - chr5.1:63759568-63759587 None:intergenic 25.0%
!! ACAAATATTCAACTTTTGCT+TGG + chr5.1:63759305-63759324 MS.gene061188:CDS 25.0%
!! ATAATATGAGGAAATTTTGG+GGG + chr5.1:63761291-63761310 MS.gene061188:intron 25.0%
!! CTGAAACTGAATCTATATTT+TGG + chr5.1:63761829-63761848 MS.gene061188:CDS 25.0%
!! CTTGTCACATATTTTTCTTT+TGG + chr5.1:63761390-63761409 MS.gene061188:intron 25.0%
!! GAAGCAGATTGAATTTTATA+TGG - chr5.1:63762116-63762135 None:intergenic 25.0%
!! TAATTTTGTCTAAGTTCAAG+TGG - chr5.1:63761183-63761202 None:intergenic 25.0%
!!! AAACTCATGTGTTTTTACTT+AGG + chr5.1:63759502-63759521 MS.gene061188:intron 25.0%
!!! ACATATTTTTCTTTTGGCTA+TGG + chr5.1:63761396-63761415 MS.gene061188:intron 25.0%
!!! ATTTTTATGTGTTTTGAAGG+AGG + chr5.1:63759720-63759739 MS.gene061188:intron 25.0%
!!! CATATTTTTCTTTTGGCTAT+GGG + chr5.1:63761397-63761416 MS.gene061188:intron 25.0%
AAATGAGGTTTGGAAAATTG+AGG + chr5.1:63761983-63762002 MS.gene061188:CDS 30.0%
AAATGTAGACCTTCACTTTA+TGG - chr5.1:63760878-63760897 None:intergenic 30.0%
AAGGGAAAACAAAGTGAAAT+GGG - chr5.1:63760668-63760687 None:intergenic 30.0%
ACCTTCATGTAAAAAAGACA+AGG - chr5.1:63760687-63760706 None:intergenic 30.0%
ACTATGATTTAAAGATCGTG+CGG - chr5.1:63761146-63761165 None:intergenic 30.0%
CAAATCAATTAGGCAATGTT+TGG - chr5.1:63760761-63760780 None:intergenic 30.0%
CATACAAGACTATAGAATAG+TGG + chr5.1:63761872-63761891 MS.gene061188:CDS 30.0%
CCTTCATGTAAAAAAGACAA+GGG - chr5.1:63760686-63760705 None:intergenic 30.0%
GATGATCTTGATTCACTATT+TGG - chr5.1:63759266-63759285 None:intergenic 30.0%
GGTATAATGCATATCAAAAG+AGG + chr5.1:63761425-63761444 MS.gene061188:intron 30.0%
GTATTCAAATAGCACATTGT+GGG + chr5.1:63761898-63761917 MS.gene061188:CDS 30.0%
TACTCATTAGTGATAGGAAA+AGG - chr5.1:63759353-63759372 None:intergenic 30.0%
TCAAAAGAGGGGAATATAAA+AGG + chr5.1:63761438-63761457 MS.gene061188:intron 30.0%
TTCAAGGACAAGTATAAATG+AGG + chr5.1:63761968-63761987 MS.gene061188:CDS 30.0%
TTGAAGAGAGATGAAGAAAA+AGG + chr5.1:63762062-63762081 MS.gene061188:CDS 30.0%
! ACAAGCATTGTTGACATTTA+GGG - chr5.1:63760985-63761004 None:intergenic 30.0%
! ACTTCTTGTTTGTAATGAAG+TGG - chr5.1:63761703-63761722 None:intergenic 30.0%
! ATAATTGGTCACACAGTTTT+AGG + chr5.1:63761738-63761757 MS.gene061188:CDS 30.0%
! GTTGAAAGTATGTATGCAAT+GGG + chr5.1:63759811-63759830 MS.gene061188:CDS 30.0%
! TGTTGAAAGTATGTATGCAA+TGG + chr5.1:63759810-63759829 MS.gene061188:CDS 30.0%
! TGTTGAGTTGTTGAATAGAT+TGG - chr5.1:63761619-63761638 None:intergenic 30.0%
! TGTTGGTGAAAATATCTTCT+GGG - chr5.1:63759202-63759221 None:intergenic 30.0%
! TTGTTGGTGAAAATATCTTC+TGG - chr5.1:63759203-63759222 None:intergenic 30.0%
!! ATGTCGATTTATTGTTCAAC+CGG + chr5.1:63761237-63761256 MS.gene061188:intron 30.0%
!!! GATTTTTTCGAAGCTTTTTG+TGG + chr5.1:63759612-63759631 MS.gene061188:intron 30.0%
!!! TGACCTTTTTCAAATGAGAA+GGG - chr5.1:63760815-63760834 None:intergenic 30.0%
!!! TTGACCTTTTTCAAATGAGA+AGG - chr5.1:63760816-63760835 None:intergenic 30.0%
AAAACAATATGTTGCAGCTG+TGG + chr5.1:63759765-63759784 MS.gene061188:CDS 35.0%
AAACAATATGTTGCAGCTGT+GGG + chr5.1:63759766-63759785 MS.gene061188:CDS 35.0%
AAAGAGGGGAATATAAAAGG+AGG + chr5.1:63761441-63761460 MS.gene061188:intron 35.0%
AACTCTAAACACCACAATTC+TGG - chr5.1:63759967-63759986 None:intergenic 35.0%
ACCTGAAGTAAACGTTTAAG+TGG - chr5.1:63760090-63760109 None:intergenic 35.0%
ATCATCACTCGGAACATTAA+AGG + chr5.1:63759380-63759399 MS.gene061188:CDS 35.0%
CAAGGGAAAACAAAGTGAAA+TGG - chr5.1:63760669-63760688 None:intergenic 35.0%
CAATTAGGCAATGTTTGGTT+AGG - chr5.1:63760756-63760775 None:intergenic 35.0%
CTATGATTTAAAGATCGTGC+GGG - chr5.1:63761145-63761164 None:intergenic 35.0%
GGACAAGTATAAATGAGGTT+TGG + chr5.1:63761973-63761992 MS.gene061188:CDS 35.0%
GGGGTAGATTCAAATCAATT+AGG - chr5.1:63760771-63760790 None:intergenic 35.0%
GGTATTCAAATAGCACATTG+TGG + chr5.1:63761897-63761916 MS.gene061188:CDS 35.0%
GGTTTGTACTCATTAGTGAT+AGG - chr5.1:63759359-63759378 None:intergenic 35.0%
GTGATAGGAAAAGGAATCAA+TGG - chr5.1:63759344-63759363 None:intergenic 35.0%
GTGGATATGAAAGAAGAGTT+GGG + chr5.1:63759916-63759935 MS.gene061188:CDS 35.0%
TAGACCTTCACTTTATGGTA+GGG - chr5.1:63760873-63760892 None:intergenic 35.0%
TCATCTCTCTTCAAATCACT+AGG - chr5.1:63762056-63762075 None:intergenic 35.0%
TTAATGTTCCGAGTGATGAT+GGG - chr5.1:63759380-63759399 None:intergenic 35.0%
TTATCCCTACCATAAAGTGA+AGG + chr5.1:63760866-63760885 MS.gene061188:intron 35.0%
TTCAACAACTCAACATGCAT+AGG + chr5.1:63761624-63761643 MS.gene061188:CDS 35.0%
TTTAATGTTCCGAGTGATGA+TGG - chr5.1:63759381-63759400 None:intergenic 35.0%
! AAACTTGGGTCACTTTATCA+AGG + chr5.1:63761922-63761941 MS.gene061188:CDS 35.0%
! AGAATTGTGGTGTTTAGAGT+TGG + chr5.1:63759966-63759985 MS.gene061188:CDS 35.0%
! CAAGACTATAGAATAGTGGA+TGG + chr5.1:63761876-63761895 MS.gene061188:CDS 35.0%
! CAAGCATTGTTGACATTTAG+GGG - chr5.1:63760984-63761003 None:intergenic 35.0%
! CACTTTGAGTTCGTTTATAG+TGG - chr5.1:63760176-63760195 None:intergenic 35.0%
! GACAAGCATTGTTGACATTT+AGG - chr5.1:63760986-63761005 None:intergenic 35.0%
! GATATTTTCACCAACAAGAG+TGG + chr5.1:63759206-63759225 MS.gene061188:CDS 35.0%
! TGGTTTGCAAAATGTTGTGT+TGG + chr5.1:63761316-63761335 MS.gene061188:intron 35.0%
!! ACTTTATCAAGGTTTGGTGA+AGG + chr5.1:63761933-63761952 MS.gene061188:CDS 35.0%
!! GTGAAAATATCTTCTGGGAT+GGG - chr5.1:63759197-63759216 None:intergenic 35.0%
!!! CCCTTGTCTTTTTTACATGA+AGG + chr5.1:63760683-63760702 MS.gene061188:intron 35.0%
AAAATTAGTGCAGGGAGTGA+TGG + chr5.1:63760003-63760022 MS.gene061188:CDS 40.0%
AAGGACCTGAGAATCATTCA+AGG + chr5.1:63761952-63761971 MS.gene061188:CDS 40.0%
AATAGGTACCTCAGAGTTTG+TGG + chr5.1:63759843-63759862 MS.gene061188:CDS 40.0%
AATCTACCCCACCTAAAACT+AGG + chr5.1:63760781-63760800 MS.gene061188:intron 40.0%
AGCACATTGTGGGAAAACTT+GGG + chr5.1:63761908-63761927 MS.gene061188:CDS 40.0%
AGGGGTCACAGCTAATTAAT+TGG - chr5.1:63760966-63760985 None:intergenic 40.0%
AGTAAACGTTTAAGTGGCCT+AGG - chr5.1:63760084-63760103 None:intergenic 40.0%
AGTACAAACCCATCATCACT+CGG + chr5.1:63759369-63759388 MS.gene061188:CDS 40.0%
CAAAACTAGACCGAACTTCA+TGG - chr5.1:63761268-63761287 None:intergenic 40.0%
CAAAGTAGCTGCTATTGATG+TGG + chr5.1:63762154-63762173 MS.gene061188:CDS 40.0%
CACATCAATAGCAGCTACTT+TGG - chr5.1:63762156-63762175 None:intergenic 40.0%
CATGGAAGAACATGAAGCAA+TGG + chr5.1:63759234-63759253 MS.gene061188:CDS 40.0%
CCATCCTCATGATAAAGGTT+GGG - chr5.1:63759152-63759171 None:intergenic 40.0%
CCTCCCTTCTCATTTGAAAA+AGG + chr5.1:63760809-63760828 MS.gene061188:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr5.1:63760501-63760520 None:intergenic 40.0%
CTGGGTACAAAATTAGTGCA+GGG + chr5.1:63759995-63760014 MS.gene061188:CDS 40.0%
CTTGTCCTTGAATGATTCTC+AGG - chr5.1:63761960-63761979 None:intergenic 40.0%
GAACTTCTAGCACAGTTTCA+AGG - chr5.1:63759175-63759194 None:intergenic 40.0%
GAGAGATGAAGAAAAAGGAG+TGG + chr5.1:63762067-63762086 MS.gene061188:CDS 40.0%
GATATGAAAGAAGAGTTGGG+AGG + chr5.1:63759919-63759938 MS.gene061188:CDS 40.0%
GATGGTGAAGAAAGTGAAGA+AGG + chr5.1:63759894-63759913 MS.gene061188:CDS 40.0%
GCACTATTTGCCACAATTCA+AGG - chr5.1:63760504-63760523 None:intergenic 40.0%
GCCACTTAAACGTTTACTTC+AGG + chr5.1:63760086-63760105 MS.gene061188:CDS 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr5.1:63760512-63760531 MS.gene061188:intron 40.0%
GGTGGATATGAAAGAAGAGT+TGG + chr5.1:63759915-63759934 MS.gene061188:CDS 40.0%
GTAGACCTTCACTTTATGGT+AGG - chr5.1:63760874-63760893 None:intergenic 40.0%
GTTGTTGAATAGATTGGCAG+TGG - chr5.1:63761613-63761632 None:intergenic 40.0%
TAGCACATTGTGGGAAAACT+TGG + chr5.1:63761907-63761926 MS.gene061188:CDS 40.0%
TCTCTCTTCAAATCACTAGG+AGG - chr5.1:63762053-63762072 None:intergenic 40.0%
TCTGGGTACAAAATTAGTGC+AGG + chr5.1:63759994-63760013 MS.gene061188:CDS 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr5.1:63760478-63760497 None:intergenic 40.0%
TTGCTTCATGTTCTTCCATG+TGG - chr5.1:63759234-63759253 None:intergenic 40.0%
TTGTCCCAACCTTTATCATG+AGG + chr5.1:63759145-63759164 MS.gene061188:CDS 40.0%
! AATAGATTGGCAGTGGACTT+TGG - chr5.1:63761606-63761625 None:intergenic 40.0%
! ATTGTGGTGTTTAGAGTTGG+TGG + chr5.1:63759969-63759988 MS.gene061188:CDS 40.0%
! GGTGAAAATATCTTCTGGGA+TGG - chr5.1:63759198-63759217 None:intergenic 40.0%
! TAACAATGGACTCAATCCCA+TGG + chr5.1:63760343-63760362 MS.gene061188:intron 40.0%
! TGGGTCACTTTATCAAGGTT+TGG + chr5.1:63761927-63761946 MS.gene061188:CDS 40.0%
!! GTTTAGAGTTGGTGGTTTCT+GGG + chr5.1:63759977-63759996 MS.gene061188:CDS 40.0%
!! TGTTTAGAGTTGGTGGTTTC+TGG + chr5.1:63759976-63759995 MS.gene061188:CDS 40.0%
!! TTCTTTTGGCTATGGGACAA+CGG + chr5.1:63761404-63761423 MS.gene061188:intron 40.0%
!!! CAACTTTTGCTTGGTGTTGT+AGG + chr5.1:63759314-63759333 MS.gene061188:CDS 40.0%
!!! CCTTTTTCAAATGAGAAGGG+AGG - chr5.1:63760812-63760831 None:intergenic 40.0%
AAACGTTTAAGTGGCCTAGG+TGG - chr5.1:63760081-63760100 None:intergenic 45.0%
ACCGAACTTCATGGTTCAAC+CGG - chr5.1:63761259-63761278 None:intergenic 45.0%
ACCGGTTGAACCATGAAGTT+CGG + chr5.1:63761255-63761274 MS.gene061188:intron 45.0%
AGGCTACTTCAGCCAAAGAA+CGG + chr5.1:63761758-63761777 MS.gene061188:CDS 45.0%
CAAGGCCATCCTCATGATAA+AGG - chr5.1:63759157-63759176 None:intergenic 45.0%
CATCATTCGCATGCTTCTAG+GGG + chr5.1:63760054-63760073 MS.gene061188:CDS 45.0%
CCCAACCTTTATCATGAGGA+TGG + chr5.1:63759149-63759168 MS.gene061188:CDS 45.0%
GAACCAAAAGTCCCGTTCTT+TGG - chr5.1:63761773-63761792 None:intergenic 45.0%
GCAATGGGTGAAGTGAGAAT+AGG + chr5.1:63759826-63759845 MS.gene061188:CDS 45.0%
GCATCATTCGCATGCTTCTA+GGG + chr5.1:63760053-63760072 MS.gene061188:CDS 45.0%
GCCATCCTCATGATAAAGGT+TGG - chr5.1:63759153-63759172 None:intergenic 45.0%
GGCAAAAGAGACCAGAATTG+TGG + chr5.1:63759953-63759972 MS.gene061188:CDS 45.0%
GGGTGTGAATAGCAAGAAGA+TGG + chr5.1:63759876-63759895 MS.gene061188:CDS 45.0%
GGTGAAGAAAGTGAAGAAGG+TGG + chr5.1:63759897-63759916 MS.gene061188:CDS 45.0%
GTACCTCAGAGTTTGTGGTA+GGG + chr5.1:63759848-63759867 MS.gene061188:CDS 45.0%
TACCTCAGAGTTTGTGGTAG+GGG + chr5.1:63759849-63759868 MS.gene061188:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr5.1:63760484-63760503 None:intergenic 45.0%
!! AGTTGGGAGGTTTTGTGTTG+TGG + chr5.1:63759932-63759951 MS.gene061188:CDS 45.0%
!! ATGAGGAAATTTTGGGGGTG+TGG + chr5.1:63761296-63761315 MS.gene061188:intron 45.0%
!!! AGGAAGCACCTAGTTTTAGG+TGG - chr5.1:63760792-63760811 None:intergenic 45.0%
!!! GAAGCACCTAGTTTTAGGTG+GGG - chr5.1:63760790-63760809 None:intergenic 45.0%
!!! GGAAGCACCTAGTTTTAGGT+GGG - chr5.1:63760791-63760810 None:intergenic 45.0%
AGAGTTTGTGGTAGGGGAAG+GGG + chr5.1:63759855-63759874 MS.gene061188:CDS 50.0%
AGCCACACCTCCTTGAATTG+TGG + chr5.1:63760491-63760510 MS.gene061188:intron 50.0%
ATCAAAGGGATTGGAAGGGC+AGG - chr5.1:63761082-63761101 None:intergenic 50.0%
ATCGTGCGGGTTTGATGCAA+GGG - chr5.1:63761132-63761151 None:intergenic 50.0%
CAATATGTTGCAGCTGTGGG+AGG + chr5.1:63759769-63759788 MS.gene061188:CDS 50.0%
CACCGTGAGATGATTGGAGT+CGG + chr5.1:63761106-63761125 MS.gene061188:intron 50.0%
CAGAGTTTGTGGTAGGGGAA+GGG + chr5.1:63759854-63759873 MS.gene061188:CDS 50.0%
CCAACAAGAGTGGAACCACA+TGG + chr5.1:63759216-63759235 MS.gene061188:CDS 50.0%
CCATGTGGTTCCACTCTTGT+TGG - chr5.1:63759219-63759238 None:intergenic 50.0%
GAAGCATGCGAATGATGCCA+AGG - chr5.1:63760051-63760070 None:intergenic 50.0%
GCCCATCAAAGGGATTGGAA+GGG - chr5.1:63761086-63761105 None:intergenic 50.0%
GCCCTTCCAATCCCTTTGAT+GGG + chr5.1:63761082-63761101 MS.gene061188:intron 50.0%
GGCATCATTCGCATGCTTCT+AGG + chr5.1:63760052-63760071 MS.gene061188:CDS 50.0%
GGCTACTTCAGCCAAAGAAC+GGG + chr5.1:63761759-63761778 MS.gene061188:CDS 50.0%
GGTACCTCAGAGTTTGTGGT+AGG + chr5.1:63759847-63759866 MS.gene061188:CDS 50.0%
TCAGAGTTTGTGGTAGGGGA+AGG + chr5.1:63759853-63759872 MS.gene061188:CDS 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr5.1:63760496-63760515 None:intergenic 50.0%
TGCCCTTCCAATCCCTTTGA+TGG + chr5.1:63761081-63761100 MS.gene061188:intron 50.0%
TTCCCCTACCACAAACTCTG+AGG - chr5.1:63759854-63759873 None:intergenic 50.0%
! CAATGGACTCAATCCCATGG+TGG + chr5.1:63760346-63760365 MS.gene061188:intron 50.0%
! CAGCCAAAGAACGGGACTTT+TGG + chr5.1:63761767-63761786 MS.gene061188:CDS 50.0%
! GGAGTGATGGAAAAGTGGCT+TGG + chr5.1:63760016-63760035 MS.gene061188:CDS 50.0%
! GTGATGGAAAAGTGGCTTGG+AGG + chr5.1:63760019-63760038 MS.gene061188:CDS 50.0%
! TGCAGGGAGTGATGGAAAAG+TGG + chr5.1:63760011-63760030 MS.gene061188:CDS 50.0%
!!! GGGAGGAAGCACCTAGTTTT+AGG - chr5.1:63760795-63760814 None:intergenic 50.0%
!!! TGTTTTGAAGGAGGCGTCGA+TGG + chr5.1:63759729-63759748 MS.gene061188:intron 50.0%
AATTTCCCAGCCCTCCACCA+TGG - chr5.1:63760363-63760382 None:intergenic 55.0%
ATCTCACGGTGGCCCATCAA+AGG - chr5.1:63761097-63761116 None:intergenic 55.0%
ATGGGCCACCGTGAGATGAT+TGG + chr5.1:63761100-63761119 MS.gene061188:intron 55.0%
ATTTCCCAGCCCTCCACCAT+GGG - chr5.1:63760362-63760381 None:intergenic 55.0%
CGACTCCAATCATCTCACGG+TGG - chr5.1:63761108-63761127 None:intergenic 55.0%
GAGTTTGTGGTAGGGGAAGG+GGG + chr5.1:63759856-63759875 MS.gene061188:CDS 55.0%
GATCGTGCGGGTTTGATGCA+AGG - chr5.1:63761133-63761152 None:intergenic 55.0%
GGCCCATCAAAGGGATTGGA+AGG - chr5.1:63761087-63761106 None:intergenic 55.0%
TCTCACGGTGGCCCATCAAA+GGG - chr5.1:63761096-63761115 None:intergenic 55.0%
TGGACTCAATCCCATGGTGG+AGG + chr5.1:63760349-63760368 MS.gene061188:intron 55.0%
! ATGCTTCTAGGGGTCCACCT+AGG + chr5.1:63760064-63760083 MS.gene061188:CDS 55.0%
! GGACTCAATCCCATGGTGGA+GGG + chr5.1:63760350-63760369 MS.gene061188:intron 55.0%
! GGCCGACTCCAATCATCTCA+CGG - chr5.1:63761111-63761130 None:intergenic 55.0%
! TGGCTTGGAGGCAAACACCT+TGG + chr5.1:63760031-63760050 MS.gene061188:CDS 55.0%
CGGTGGCCCATCAAAGGGAT+TGG - chr5.1:63761091-63761110 None:intergenic 60.0%
! CAATCCCATGGTGGAGGGCT+GGG + chr5.1:63760355-63760374 MS.gene061188:intron 60.0%
! TCAATCCCATGGTGGAGGGC+TGG + chr5.1:63760354-63760373 MS.gene061188:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 63759134 63762214 63759134 ID=MS.gene061188
chr5.1 mRNA 63759134 63762214 63759134 ID=MS.gene061188.t1;Parent=MS.gene061188
chr5.1 exon 63759134 63759412 63759134 ID=MS.gene061188.t1.exon1;Parent=MS.gene061188.t1
chr5.1 CDS 63759134 63759412 63759134 ID=cds.MS.gene061188.t1;Parent=MS.gene061188.t1
chr5.1 exon 63759739 63760107 63759739 ID=MS.gene061188.t1.exon2;Parent=MS.gene061188.t1
chr5.1 CDS 63759739 63760107 63759739 ID=cds.MS.gene061188.t1;Parent=MS.gene061188.t1
chr5.1 exon 63761594 63762214 63761594 ID=MS.gene061188.t1.exon3;Parent=MS.gene061188.t1
chr5.1 CDS 63761594 63762214 63761594 ID=cds.MS.gene061188.t1;Parent=MS.gene061188.t1
Gene Sequence

>MS.gene061188

ATGAAGAAGCTTTGTCCCAACCTTTATCATGAGGATGGCCTTGAAACTGTGCTAGAAGTTCCCATCCCAGAAGATATTTTCACCAACAAGAGTGGAACCACATGGAAGAACATGAAGCAATGGATGAAACCAAATAGTGAATCAAGATCATCACGTTTTGAAGATCCAAACACAAATATTCAACTTTTGCTTGGTGTTGTAGGAGCTCCATTGATTCCTTTTCCTATCACTAATGAGTACAAACCCATCATCACTCGGAACATTAAAGGCCATAACATTGTAAGTATAGAAGAAACTCTTTTGTTTTGTTTTCTTGATTGAGATTAATTATAAATTTATAATGCAATACCACAATTTTTAATTAGACAAAACTCATGTGTTTTTACTTAGGTGATTTTCGTATTGTTCTTAAGTTAAAATATTCATAACTACCACGAGTTTCTTAAATTCATAATTTTCTCAAAATTTTATCTAAATGGATTTTTTCGAAGCTTTTTGTGGTTGAATAAAAAAAATATTGAAGGTAAGAACAACAAATAATGAAATATACATAAGTTTTGTATAGTTAAATAATTTTTCTTAAATAATTTTTATGTGTTTTGAAGGAGGCGTCGATGGCGAAGTATATAGTAAAACAATATGTTGCAGCTGTGGGAGGAGAGAGTGTTTTAAATAATGTTGAAAGTATGTATGCAATGGGTGAAGTGAGAATAGGTACCTCAGAGTTTGTGGTAGGGGAAGGGGGTGTGAATAGCAAGAAGATGGTGAAGAAAGTGAAGAAGGTGGATATGAAAGAAGAGTTGGGAGGTTTTGTGTTGTGGCAAAAGAGACCAGAATTGTGGTGTTTAGAGTTGGTGGTTTCTGGGTACAAAATTAGTGCAGGGAGTGATGGAAAAGTGGCTTGGAGGCAAACACCTTGGCATCATTCGCATGCTTCTAGGGGTCCACCTAGGCCACTTAAACGTTTACTTCAGGTAAATTTAATTTAAAGTTCATTAATCATTTTGTGAATTTTGTGTTGCAATCATATTAATCTCGACCACTATAAACGAACTCAAAGTGTCTATGAGATGTCAACTCAATTTTAAAAGTTTGATTATGTATCTCAAGATACAGAGTTCAAATCTTCTAAAAAAACTATTGTAAAATAACTGTTATTGTTGTTTTAATAATAATAATAATAATTTATTTTTCATCATTTTATTTTTATAACAATGGACTCAATCCCATGGTGGAGGGCTGGGAAATTTAATGTTACGTTTTCAAATTGGAAAATGCTACTTCTCAAGAAAAATAGCTTTAAGAAATAGTTGGCAAATTTTAATTGGATGATTTATTTGTCCACTTCCTATTTTTCAGCCACACCTCCTTGAATTGTGGCAAATAGTGCATTGTGATTGGCTATTCTTTATTCTTGAAGAATTCTTGATGTTATTTTTCTAGAGATATAGCATTGCTCTTTCAAATTTGTTTGTTTCACATTGTTTCAAGTATGAATCTGATTTTAATGTGTTCAACTGTATGTTGTGTTCCCATTTCACTTTGTTTTCCCTTGTCTTTTTTACATGAAGGTCTAGCTTTCTATAACAAAAAATATAAGTTTGGACGTTGCAAGCTTACCTAACCAAACATTGCCTAATTGATTTGAATCTACCCCACCTAAAACTAGGTGCTTCCTCCCTTCTCATTTGAAAAAGGTCAATTTCCAAATTGTTTTTTCATGGAAATTAACTTATCCCTACCATAAAGTGAAGGTCTACATTTAATATCTAAAGTCAACAATTTAATAGCTAATGCAAGGAAATCTAAAGTTTGAAATTTGAATTTATCCAATTAATTAGCTGTGACCCCTAAATGTCAACAATGCTTGTCATTCTCATTGCTTAGTGCATGACAACTTGTTTCTAATTTTTTTCTTTCAAAATGCTTTGTTTTACTTTAATTTCCTGCCCTTCCAATCCCTTTGATGGGCCACCGTGAGATGATTGGAGTCGGCCCTTGCATCAAACCCGCACGATCTTTAAATCATAGTTCAACTATTTTAAACCACTTGAACTTAGACAAAATTATGATCGAACCATTCAAATAAGTGTATCATAGACAATGTCGATTTATTGTTCAACCGGTTGAACCATGAAGTTCGGTCTAGTTTTGAAAATAATATGAGGAAATTTTGGGGGTGTGGTTTGCAAAATGTTGTGTTGGTAGCAATAATATGATACTATATCTCAAAATCAAAAGCTTTATGATTTCATGCTTGTCACATATTTTTCTTTTGGCTATGGGACAACGGTATAATGCATATCAAAAGAGGGGAATATAAAAGGAGGACATGATGCTATTGTGTTAAGAAAATACAAATACTAGATTATAAGTTTATACAAATTACTATTATTTTGTTCATTATAATTTATACATATCTCTTAATAAATAAATTAATTATTGTCTTAATTTGAACAGGGTCTTGATCCAAAGTCCACTGCCAATCTATTCAACAACTCAACATGCATAGGAGAGAAGACAGTAAACAACGAAGAATGTTTCATTCTAAAACTTGAAGCAGAAACCACTTCATTACAAACAAGAAGTAGTAGTAACATAGAAATAATTGGTCACACAGTTTTAGGCTACTTCAGCCAAAGAACGGGACTTTTGGTTCAATTAGAAGACACCAACTTGATTAAACTAAAATCTTCTGAAACTGAATCTATATTTTGGGAAACAAATACAGAATCTCTCATACAAGACTATAGAATAGTGGATGGTATTCAAATAGCACATTGTGGGAAAACTTGGGTCACTTTATCAAGGTTTGGTGAAGGACCTGAGAATCATTCAAGGACAAGTATAAATGAGGTTTGGAAAATTGAGGAAGTTGATTTTAATATTAAAGGGTTGTCTTTGGATTGTTTTTTACCTCCTAGTGATTTGAAGAGAGATGAAGAAAAAGGAGTGGTTTCTGTTAGTAATGCTAAGTTACCATATAAAATTCAATCTGCTTCTTTTAAGATTAGTGCTTCCAAAGTAGCTGCTATTGATGTGGATGATTCATGTGTTAGTGATAACATTCAAGATATGTAG

Protein sequence

>MS.gene061188.t1

MKKLCPNLYHEDGLETVLEVPIPEDIFTNKSGTTWKNMKQWMKPNSESRSSRFEDPNTNIQLLLGVVGAPLIPFPITNEYKPIITRNIKGHNIEASMAKYIVKQYVAAVGGESVLNNVESMYAMGEVRIGTSEFVVGEGGVNSKKMVKKVKKVDMKEELGGFVLWQKRPELWCLELVVSGYKISAGSDGKVAWRQTPWHHSHASRGPPRPLKRLLQGLDPKSTANLFNNSTCIGEKTVNNEECFILKLEAETTSLQTRSSSNIEIIGHTVLGYFSQRTGLLVQLEDTNLIKLKSSETESIFWETNTESLIQDYRIVDGIQIAHCGKTWVTLSRFGEGPENHSRTSINEVWKIEEVDFNIKGLSLDCFLPPSDLKRDEEKGVVSVSNAKLPYKIQSASFKISASKVAAIDVDDSCVSDNIQDM