Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29779.t1 | XP_003602073.2 | 93.9 | 294 | 18 | 0 | 1 | 294 | 1 | 294 | 3.40E-152 | 547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29779.t1 | O64885 | 54.6 | 293 | 125 | 4 | 1 | 288 | 1 | 290 | 6.4e-75 | 282.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29779.t1 | G7J512 | 93.9 | 294 | 18 | 0 | 1 | 294 | 38 | 331 | 2.5e-152 | 547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29779 | MS.gene36640 | PPI |
| MS.gene29779 | MS.gene023974 | PPI |
| MS.gene29779 | MS.gene96949 | PPI |
| MS.gene29779 | MS.gene035194 | PPI |
| MS.gene29779 | MS.gene23437 | PPI |
| MS.gene29779 | MS.gene85452 | PPI |
| MS.gene29779 | MS.gene058668 | PPI |
| MS.gene29779 | MS.gene018651 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29779.t1 | MTR_3g088850 | 96.599 | 294 | 10 | 0 | 1 | 294 | 1 | 294 | 0.0 | 589 |
| MS.gene29779.t1 | MTR_3g088850 | 96.599 | 294 | 10 | 0 | 1 | 294 | 38 | 331 | 0.0 | 588 |
| MS.gene29779.t1 | MTR_3g088850 | 96.599 | 294 | 10 | 0 | 1 | 294 | 64 | 357 | 0.0 | 587 |
| MS.gene29779.t1 | MTR_3g096970 | 89.456 | 294 | 28 | 1 | 1 | 294 | 1 | 291 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29779.t1 | AT2G44510 | 54.949 | 293 | 124 | 4 | 1 | 288 | 1 | 290 | 1.34e-93 | 281 |
| MS.gene29779.t1 | AT5G03830 | 47.967 | 246 | 85 | 7 | 1 | 244 | 1 | 205 | 1.72e-53 | 176 |
| MS.gene29779.t1 | AT5G03830 | 47.967 | 246 | 85 | 7 | 1 | 244 | 1 | 205 | 1.72e-53 | 176 |
| MS.gene29779.t1 | AT5G03830 | 47.967 | 246 | 85 | 7 | 1 | 244 | 1 | 205 | 1.72e-53 | 176 |
Find 87 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTCTTGGCTTGCTTTA+AGG | 0.096395 | 3.3:+64758148 | None:intergenic |
| CTCAAAGGATTCAATGGATT+TGG | 0.172099 | 3.3:+64759397 | None:intergenic |
| TTGCTACCGCTCTTAATTTA+TGG | 0.178946 | 3.3:-64758884 | MS.gene29779:CDS |
| TGATCAGTTGAGATTACTTT+TGG | 0.218935 | 3.3:-64758118 | MS.gene29779:CDS |
| TGGCTTTGCAGACTTGATTT+TGG | 0.241139 | 3.3:-64758970 | MS.gene29779:CDS |
| CCATGGAAATCATTTGGTTT+AGG | 0.265164 | 3.3:+64759044 | None:intergenic |
| TTAGGTCGTTGCTTCCTTCT+TGG | 0.271489 | 3.3:+64759497 | None:intergenic |
| CTCTTCCAAAGTGTGCTTGC+TGG | 0.277420 | 3.3:+64759237 | None:intergenic |
| CTCTTAATTTATGGAGGTAT+AGG | 0.323978 | 3.3:-64758875 | MS.gene29779:CDS |
| TCAGATGACTCGGACCCTTC+TGG | 0.356080 | 3.3:+64759211 | None:intergenic |
| AGCACATAACGTAGGTCTTC+TGG | 0.358688 | 3.3:-64758088 | MS.gene29779:CDS |
| TTAACTCCATGGAAATCATT+TGG | 0.362300 | 3.3:+64759038 | None:intergenic |
| GCTTAAACTGGAAGGAATTC+CGG | 0.375583 | 3.3:+64757846 | None:intergenic |
| TCTTAATTTATGGAGGTATA+GGG | 0.378376 | 3.3:-64758874 | MS.gene29779:intron |
| CGAGTAAGAGCGCGGGCAAA+AGG | 0.390292 | 3.3:+64759452 | None:intergenic |
| AATGTAATGGGCCAAGATTT+AGG | 0.400189 | 3.3:+64759479 | None:intergenic |
| TAATAGAAACATCATGATAA+TGG | 0.401909 | 3.3:+64757398 | None:intergenic |
| GTATTATATAATGCTTAAAC+TGG | 0.402268 | 3.3:+64757834 | None:intergenic |
| TGCTTCCTTCTTGGCTTTCG+AGG | 0.418543 | 3.3:+64759506 | None:intergenic |
| CATATAAATGTGGTAAAAGC+TGG | 0.418657 | 3.3:+64758037 | None:intergenic |
| GGGTTTCTCAAAGGATTCAA+TGG | 0.435353 | 3.3:+64759391 | None:intergenic |
| CTTACCTTGATGTCGAAGAA+TGG | 0.441510 | 3.3:-64759001 | MS.gene29779:CDS |
| ATGGATTTGGAACGACGGTT+TGG | 0.441562 | 3.3:+64759410 | None:intergenic |
| TTACCTTGATGTCGAAGAAT+GGG | 0.448973 | 3.3:-64759000 | MS.gene29779:CDS |
| GGAAGCAACGACCTAAATCT+TGG | 0.457740 | 3.3:-64759490 | MS.gene29779:CDS |
| GATCAGCAACACCCTTCTCT+TGG | 0.470409 | 3.3:+64758136 | None:intergenic |
| GAGTAAGAGCGCGGGCAAAA+GGG | 0.470885 | 3.3:+64759453 | None:intergenic |
| GCAAAAGGGGAGAATGTAAT+GGG | 0.471618 | 3.3:+64759467 | None:intergenic |
| GGCAAAAGGGGAGAATGTAA+TGG | 0.485013 | 3.3:+64759466 | None:intergenic |
| TAACTTGCCTCATGAGGTGC+AGG | 0.500201 | 3.3:+64757444 | None:intergenic |
| CGGTTTGGCTTAGAAACAAA+GGG | 0.512973 | 3.3:+64759425 | None:intergenic |
| ATATAAATGTGGTAAAAGCT+GGG | 0.516100 | 3.3:+64758038 | None:intergenic |
| AACAGCCAACGAAGGACCTC+CGG | 0.519563 | 3.3:-64757865 | MS.gene29779:intron |
| AATCCCATTCTTCGACATCA+AGG | 0.523684 | 3.3:+64758997 | None:intergenic |
| TGGCTCCAGCAAGCACACTT+TGG | 0.524816 | 3.3:-64759242 | MS.gene29779:CDS |
| CAGAGCAACAGAAAAGAAAA+CGG | 0.530065 | 3.3:-64757647 | MS.gene29779:CDS |
| GAAGGGTCCGAGTCATCTGA+TGG | 0.530189 | 3.3:-64759208 | MS.gene29779:CDS |
| TCTCTTGGCTTGCTTTAAGG+AGG | 0.534343 | 3.3:+64758151 | None:intergenic |
| GTGGTAAAAGCTGGGGAGGA+AGG | 0.534852 | 3.3:+64758046 | None:intergenic |
| CCTTAAAGCAAGCCAAGAGA+AGG | 0.538235 | 3.3:-64758148 | MS.gene29779:CDS |
| ATAATTTCCAGTTAAGCTCA+TGG | 0.539419 | 3.3:-64757497 | MS.gene29779:intron |
| TCAGCAGCCTGCACCTCATG+AGG | 0.539473 | 3.3:-64757451 | MS.gene29779:CDS |
| AATACTTAGCAAAATTTACA+AGG | 0.539825 | 3.3:-64757816 | MS.gene29779:intron |
| CCTAAACCAAATGATTTCCA+TGG | 0.542817 | 3.3:-64759044 | MS.gene29779:CDS |
| CTACCGCTCTTAATTTATGG+AGG | 0.556422 | 3.3:-64758881 | MS.gene29779:CDS |
| TATATAATGCTTAAACTGGA+AGG | 0.560232 | 3.3:+64757838 | None:intergenic |
| GTAGAGGATGATGAGGACGA+AGG | 0.562570 | 3.3:-64758918 | MS.gene29779:CDS |
| GCAGCAAGGTCTTAACTCCA+TGG | 0.566822 | 3.3:+64759027 | None:intergenic |
| ATGTCTCACCTCATCTTCTG+TGG | 0.569078 | 3.3:+64757987 | None:intergenic |
| GGAAGGTGTGGGTTTCTCAA+AGG | 0.571208 | 3.3:+64759382 | None:intergenic |
| AAATGCCTCGAAAGCCAAGA+AGG | 0.572851 | 3.3:-64759511 | MS.gene29779:CDS |
| TACTGTAGGGACTGTTGTGA+AGG | 0.577451 | 3.3:-64758940 | MS.gene29779:CDS |
| TTACTAGTAGAGGAAGGTGT+GGG | 0.584179 | 3.3:+64759371 | None:intergenic |
| AGTAAGAGCGCGGGCAAAAG+GGG | 0.585680 | 3.3:+64759454 | None:intergenic |
| GAATTCCGGAGGTCCTTCGT+TGG | 0.585803 | 3.3:+64757860 | None:intergenic |
| AAAAGAGAATCATATAAATG+TGG | 0.590238 | 3.3:+64758027 | None:intergenic |
| AAAAGGTGTCTTACTAGTAG+AGG | 0.591028 | 3.3:+64759361 | None:intergenic |
| ACGGTTTGGCTTAGAAACAA+AGG | 0.596096 | 3.3:+64759424 | None:intergenic |
| AAGGGTCCGAGTCATCTGAT+GGG | 0.600422 | 3.3:-64759207 | MS.gene29779:CDS |
| GTCATGGGCCACAGAAGATG+AGG | 0.600540 | 3.3:-64757995 | MS.gene29779:intron |
| ATCATATAACTTGCCTCATG+AGG | 0.601021 | 3.3:+64757438 | None:intergenic |
| AAATGTGGTAAAAGCTGGGG+AGG | 0.603377 | 3.3:+64758042 | None:intergenic |
| AAACTCCCCATCAGATGACT+CGG | 0.618901 | 3.3:+64759201 | None:intergenic |
| CTTAAAGCAAGCCAAGAGAA+GGG | 0.622283 | 3.3:-64758147 | MS.gene29779:CDS |
| CTTACTAGTAGAGGAAGGTG+TGG | 0.627433 | 3.3:+64759370 | None:intergenic |
| GGTGTCTTACTAGTAGAGGA+AGG | 0.630445 | 3.3:+64759365 | None:intergenic |
| ACTTTGGAAGAGAGACCAGA+AGG | 0.630897 | 3.3:-64759226 | MS.gene29779:CDS |
| GGGCATACGAGTAAGAGCGC+GGG | 0.637156 | 3.3:+64759445 | None:intergenic |
| AAGATGTATTATGAAACTCA+AGG | 0.638398 | 3.3:-64758181 | MS.gene29779:CDS |
| TATAAATGTGGTAAAAGCTG+GGG | 0.644703 | 3.3:+64758039 | None:intergenic |
| ATCAAGGTAAGTTTGCAGCA+AGG | 0.645459 | 3.3:+64759013 | None:intergenic |
| TCTTCTGGTCTCACAACGTG+TGG | 0.646090 | 3.3:-64758073 | MS.gene29779:CDS |
| AGGGACTGTTGTGAAGGTAG+AGG | 0.647189 | 3.3:-64758934 | MS.gene29779:CDS |
| AGGGTCCGAGTCATCTGATG+GGG | 0.656952 | 3.3:-64759206 | MS.gene29779:CDS |
| GCAGGCTGCTGAGTGCGCAG+AGG | 0.665779 | 3.3:+64757462 | None:intergenic |
| CTTTGGAAGAGAGACCAGAA+GGG | 0.667517 | 3.3:-64759225 | MS.gene29779:CDS |
| AGGGCATACGAGTAAGAGCG+CGG | 0.669005 | 3.3:+64759444 | None:intergenic |
| ATTCAATGGATTTGGAACGA+CGG | 0.673927 | 3.3:+64759405 | None:intergenic |
| AGTGCGCAGAGGAAAACAGA+AGG | 0.677336 | 3.3:+64757473 | None:intergenic |
| GTCGAAGAATGGGATTTGAG+TGG | 0.692626 | 3.3:-64758990 | MS.gene29779:CDS |
| ACGGAGCGATGATAGCGAAG+AGG | 0.694142 | 3.3:-64757628 | MS.gene29779:CDS |
| AATAGTATACGTAAAGCCAG+AGG | 0.698407 | 3.3:-64757604 | MS.gene29779:CDS |
| ATACCTCCATAAATTAAGAG+CGG | 0.705253 | 3.3:+64758878 | None:intergenic |
| TGTGAAGGTAGAGGATGATG+AGG | 0.709733 | 3.3:-64758925 | MS.gene29779:CDS |
| TAAACTGGAAGGAATTCCGG+AGG | 0.716607 | 3.3:+64757849 | None:intergenic |
| GGGGAACAAGCACATAACGT+AGG | 0.723235 | 3.3:-64758096 | MS.gene29779:CDS |
| GCACACTTAACAGCCAACGA+AGG | 0.730403 | 3.3:-64757873 | MS.gene29779:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTATATATTACAATCA+AGG | + | chr3.3:64758108-64758127 | None:intergenic | 15.0% |
| !! | TTAAATTATAAAAGGGAAAA+AGG | + | chr3.3:64757557-64757576 | None:intergenic | 15.0% |
| !!! | AGAAAATTGATTTTTTCTTT+CGG | - | chr3.3:64758228-64758247 | MS.gene29779:intron | 15.0% |
| !!! | TTATGTTTTATTTGTAAGTT+TGG | - | chr3.3:64758625-64758644 | MS.gene29779:intron | 15.0% |
| !! | AAAAGAGAATCATATAAATG+TGG | + | chr3.3:64758874-64758893 | None:intergenic | 20.0% |
| !! | AAATTGAATAATAGCATAAG+AGG | + | chr3.3:64757732-64757751 | None:intergenic | 20.0% |
| !! | AATACTTAGCAAAATTTACA+AGG | - | chr3.3:64759082-64759101 | MS.gene29779:intron | 20.0% |
| !! | ATAAAGAGGAATAAACAAAA+AGG | + | chr3.3:64758179-64758198 | None:intergenic | 20.0% |
| !! | GACAAAATAATTCAAAATGA+TGG | + | chr3.3:64759357-64759376 | None:intergenic | 20.0% |
| !! | GTATTATATAATGCTTAAAC+TGG | + | chr3.3:64759067-64759086 | None:intergenic | 20.0% |
| !! | TAAAACATTACAAAAACAAG+TGG | + | chr3.3:64759195-64759214 | None:intergenic | 20.0% |
| !! | TAATAGAAACATCATGATAA+TGG | + | chr3.3:64759503-64759522 | None:intergenic | 20.0% |
| !! | TCTCAAATAAAAGATGTATT+TGG | + | chr3.3:64758653-64758672 | None:intergenic | 20.0% |
| !!! | ATAATATCTCTGTTGTTTAA+GGG | - | chr3.3:64757800-64757819 | MS.gene29779:intron | 20.0% |
| !!! | ATTGCTATTTTTAGCTTTTA+TGG | - | chr3.3:64759148-64759167 | MS.gene29779:intron | 20.0% |
| !!! | ATTTTGGTAATCAAGAAAAA+AGG | - | chr3.3:64758356-64758375 | MS.gene29779:intron | 20.0% |
| !!! | GTAGTATATGATTACTATTT+TGG | + | chr3.3:64758334-64758353 | None:intergenic | 20.0% |
| !!! | TAATCATATACTACGTATTT+TGG | - | chr3.3:64758340-64758359 | MS.gene29779:intron | 20.0% |
| !!! | TATAATATCTCTGTTGTTTA+AGG | - | chr3.3:64757799-64757818 | MS.gene29779:intron | 20.0% |
| ! | AAGATGTATTATGAAACTCA+AGG | - | chr3.3:64758717-64758736 | MS.gene29779:intron | 25.0% |
| ! | AAGCTAAAAATAGCAATAAG+AGG | + | chr3.3:64759145-64759164 | None:intergenic | 25.0% |
| ! | ATATAAATGTGGTAAAAGCT+GGG | + | chr3.3:64758863-64758882 | None:intergenic | 25.0% |
| ! | CAAAAAAGTAAAGGAAAAAG+AGG | + | chr3.3:64758082-64758101 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAGGAATTTGTA+TGG | - | chr3.3:64758367-64758386 | MS.gene29779:intron | 25.0% |
| ! | TAACTAGTAAAATTGCACAA+GGG | + | chr3.3:64758285-64758304 | None:intergenic | 25.0% |
| ! | TAAGAGGACAATAAATAGAA+AGG | + | chr3.3:64759129-64759148 | None:intergenic | 25.0% |
| ! | TATATAATGCTTAAACTGGA+AGG | + | chr3.3:64759063-64759082 | None:intergenic | 25.0% |
| ! | TGCAAAGTGTAAAACATAAA+AGG | + | chr3.3:64757607-64757626 | None:intergenic | 25.0% |
| ! | TGTTTATTCCTCTTTATCTT+TGG | - | chr3.3:64758182-64758201 | MS.gene29779:CDS | 25.0% |
| ! | TTAGTAGATAAGATAGATGA+CGG | + | chr3.3:64758586-64758605 | None:intergenic | 25.0% |
| ! | TTGCTCCTAGAAAAATTATT+AGG | + | chr3.3:64758698-64758717 | None:intergenic | 25.0% |
| !! | AGCTTAACTGGAAATTATTT+TGG | + | chr3.3:64759399-64759418 | None:intergenic | 25.0% |
| !! | ATTTGGTTTAGGATCAAAAA+AGG | + | chr3.3:64757846-64757865 | None:intergenic | 25.0% |
| !! | GTAATGTTTTACTTCATTTC+TGG | - | chr3.3:64759204-64759223 | MS.gene29779:CDS | 25.0% |
| !! | TCTTAATTTATGGAGGTATA+GGG | - | chr3.3:64758024-64758043 | MS.gene29779:CDS | 25.0% |
| !! | TTGAGCCTAATAATTTTTCT+AGG | - | chr3.3:64758690-64758709 | MS.gene29779:intron | 25.0% |
| !!! | AAATTTTGTTTATGACTGAC+TGG | - | chr3.3:64758481-64758500 | MS.gene29779:intron | 25.0% |
| !!! | ATATGATTACTATTTTGGTG+AGG | + | chr3.3:64758329-64758348 | None:intergenic | 25.0% |
| !!! | CTCTTTTTCCTTTACTTTTT+TGG | - | chr3.3:64758080-64758099 | MS.gene29779:CDS | 25.0% |
| !!! | TCTTTTTAATGAAGTGTCAT+GGG | - | chr3.3:64758888-64758907 | MS.gene29779:CDS | 25.0% |
| AAAATTGCACAAGGGTAAAA+TGG | + | chr3.3:64758277-64758296 | None:intergenic | 30.0% | |
| ATAATTTCCAGTTAAGCTCA+TGG | - | chr3.3:64759401-64759420 | MS.gene29779:CDS | 30.0% | |
| ATACCTCCATAAATTAAGAG+CGG | + | chr3.3:64758023-64758042 | None:intergenic | 30.0% | |
| CAACGTTTCTTTAATGTCTT+TGG | - | chr3.3:64758428-64758447 | MS.gene29779:intron | 30.0% | |
| CATATAAATGTGGTAAAAGC+TGG | + | chr3.3:64758864-64758883 | None:intergenic | 30.0% | |
| CTAACTAGTAAAATTGCACA+AGG | + | chr3.3:64758286-64758305 | None:intergenic | 30.0% | |
| TATAAATGTGGTAAAAGCTG+GGG | + | chr3.3:64758862-64758881 | None:intergenic | 30.0% | |
| TATAATAACACAAGCGATCA+TGG | + | chr3.3:64757755-64757774 | None:intergenic | 30.0% | |
| TTAACTCCATGGAAATCATT+TGG | + | chr3.3:64757863-64757882 | None:intergenic | 30.0% | |
| TTAGGCTCAATTTAGATTAG+CGG | + | chr3.3:64758680-64758699 | None:intergenic | 30.0% | |
| TTATTCCTCTTTATCTTTGG+CGG | - | chr3.3:64758185-64758204 | MS.gene29779:CDS | 30.0% | |
| ! | AATGTCTTTGGTTCATTGAA+TGG | - | chr3.3:64758440-64758459 | MS.gene29779:intron | 30.0% |
| ! | CTCTTAATTTATGGAGGTAT+AGG | - | chr3.3:64758023-64758042 | MS.gene29779:CDS | 30.0% |
| ! | TGATCAGTTGAGATTACTTT+TGG | - | chr3.3:64758780-64758799 | MS.gene29779:intron | 30.0% |
| !! | ATCAGTTGAGATTACTTTTG+GGG | - | chr3.3:64758782-64758801 | MS.gene29779:intron | 30.0% |
| !! | CTCTTTTTAATGAAGTGTCA+TGG | - | chr3.3:64758887-64758906 | MS.gene29779:CDS | 30.0% |
| !! | GATCAGTTGAGATTACTTTT+GGG | - | chr3.3:64758781-64758800 | MS.gene29779:intron | 30.0% |
| AATAGTATACGTAAAGCCAG+AGG | - | chr3.3:64759294-64759313 | MS.gene29779:intron | 35.0% | |
| CAAAAAAGGCAAAATCTGCT+TGG | + | chr3.3:64757832-64757851 | None:intergenic | 35.0% | |
| CAGAGCAACAGAAAAGAAAA+CGG | - | chr3.3:64759251-64759270 | MS.gene29779:intron | 35.0% | |
| CCTAAACCAAATGATTTCCA+TGG | - | chr3.3:64757854-64757873 | MS.gene29779:CDS | 35.0% | |
| TAATTCAAAATGATGGCACC+AGG | + | chr3.3:64759350-64759369 | None:intergenic | 35.0% | |
| TATTCCTCTTTATCTTTGGC+GGG | - | chr3.3:64758186-64758205 | MS.gene29779:CDS | 35.0% | |
| TCGTGAAAAATTTCATCCTC+TGG | + | chr3.3:64759313-64759332 | None:intergenic | 35.0% | |
| TTACCTTGATGTCGAAGAAT+GGG | - | chr3.3:64757898-64757917 | MS.gene29779:intron | 35.0% | |
| TTGCTACCGCTCTTAATTTA+TGG | - | chr3.3:64758014-64758033 | MS.gene29779:CDS | 35.0% | |
| ! | ACGAGGTATTATTAGTATCC+TGG | - | chr3.3:64759329-64759348 | MS.gene29779:intron | 35.0% |
| ! | AGACATTGATAGCATCAGAT+GGG | - | chr3.3:64758928-64758947 | MS.gene29779:CDS | 35.0% |
| ! | AGAGGATGAAATTTTTCACG+AGG | - | chr3.3:64759312-64759331 | MS.gene29779:intron | 35.0% |
| ! | ATCATATAACTTGCCTCATG+AGG | + | chr3.3:64759463-64759482 | None:intergenic | 35.0% |
| ! | ATGTTTTTCTGTTTGACTGC+TGG | - | chr3.3:64758964-64758983 | MS.gene29779:CDS | 35.0% |
| ! | ATTCAATGGATTTGGAACGA+CGG | + | chr3.3:64757496-64757515 | None:intergenic | 35.0% |
| ! | CCATGGAAATCATTTGGTTT+AGG | + | chr3.3:64757857-64757876 | None:intergenic | 35.0% |
| ! | CTCAAAGGATTCAATGGATT+TGG | + | chr3.3:64757504-64757523 | None:intergenic | 35.0% |
| ! | GAGCTTCTAAAAAAGTTGAG+GGG | + | chr3.3:64758564-64758583 | None:intergenic | 35.0% |
| ! | GGAGCTTCTAAAAAAGTTGA+GGG | + | chr3.3:64758565-64758584 | None:intergenic | 35.0% |
| ! | TCAAGGCACCAAAAAAGTAA+AGG | + | chr3.3:64758091-64758110 | None:intergenic | 35.0% |
| !! | AAAAGGTGTCTTACTAGTAG+AGG | + | chr3.3:64757540-64757559 | None:intergenic | 35.0% |
| !! | AATGTAATGGGCCAAGATTT+AGG | + | chr3.3:64757422-64757441 | None:intergenic | 35.0% |
| !! | AGTTAGCAATTTGTTGCAGA+AGG | - | chr3.3:64758300-64758319 | MS.gene29779:intron | 35.0% |
| !! | TCAGTTGAGATTACTTTTGG+GGG | - | chr3.3:64758783-64758802 | MS.gene29779:intron | 35.0% |
| !!! | ATTTTGGAACAGACTACTGT+AGG | - | chr3.3:64757944-64757963 | MS.gene29779:intron | 35.0% |
| !!! | TGGTGGACTAATTTTCACTT+TGG | - | chr3.3:64758984-64759003 | MS.gene29779:CDS | 35.0% |
| !!! | TTTTGGAACAGACTACTGTA+GGG | - | chr3.3:64757945-64757964 | MS.gene29779:intron | 35.0% |
| AATCCCATTCTTCGACATCA+AGG | + | chr3.3:64757904-64757923 | None:intergenic | 40.0% | |
| AGTAAGTCAGTGTGATGTCA+AGG | + | chr3.3:64758150-64758169 | None:intergenic | 40.0% | |
| ATCAAGGTAAGTTTGCAGCA+AGG | + | chr3.3:64757888-64757907 | None:intergenic | 40.0% | |
| CTACCGCTCTTAATTTATGG+AGG | - | chr3.3:64758017-64758036 | MS.gene29779:CDS | 40.0% | |
| CTTAAAGCAAGCCAAGAGAA+GGG | - | chr3.3:64758751-64758770 | MS.gene29779:intron | 40.0% | |
| CTTACCTTGATGTCGAAGAA+TGG | - | chr3.3:64757897-64757916 | MS.gene29779:intron | 40.0% | |
| GCAAAAGGGGAGAATGTAAT+GGG | + | chr3.3:64757434-64757453 | None:intergenic | 40.0% | |
| GCTTAAACTGGAAGGAATTC+CGG | + | chr3.3:64759055-64759074 | None:intergenic | 40.0% | |
| GGGTTTCTCAAAGGATTCAA+TGG | + | chr3.3:64757510-64757529 | None:intergenic | 40.0% | |
| TAGGAAGTGGGTCAGAAATA+GGG | + | chr3.3:64757631-64757650 | None:intergenic | 40.0% | |
| ! | ACGGTTTGGCTTAGAAACAA+AGG | + | chr3.3:64757477-64757496 | None:intergenic | 40.0% |
| ! | CGGAGCTTCTAAAAAAGTTG+AGG | + | chr3.3:64758566-64758585 | None:intergenic | 40.0% |
| ! | CGGTTTGGCTTAGAAACAAA+GGG | + | chr3.3:64757476-64757495 | None:intergenic | 40.0% |
| ! | GAGACATTGATAGCATCAGA+TGG | - | chr3.3:64758927-64758946 | MS.gene29779:CDS | 40.0% |
| ! | GTCTTTGGTTCATTGAATGG+TGG | - | chr3.3:64758443-64758462 | MS.gene29779:intron | 40.0% |
| ! | TTACTAGTAGAGGAAGGTGT+GGG | + | chr3.3:64757530-64757549 | None:intergenic | 40.0% |
| ! | TTTTTCTGTTTGACTGCTGG+TGG | - | chr3.3:64758967-64758986 | MS.gene29779:CDS | 40.0% |
| !! | TGGCTTTGCAGACTTGATTT+TGG | - | chr3.3:64757928-64757947 | MS.gene29779:intron | 40.0% |
| AAACTCCCCATCAGATGACT+CGG | + | chr3.3:64757700-64757719 | None:intergenic | 45.0% | |
| AAATGTGGTAAAAGCTGGGG+AGG | + | chr3.3:64758859-64758878 | None:intergenic | 45.0% | |
| AGAAGGACCATGAGCTTAAC+TGG | + | chr3.3:64759411-64759430 | None:intergenic | 45.0% | |
| AGCACATAACGTAGGTCTTC+TGG | - | chr3.3:64758810-64758829 | MS.gene29779:intron | 45.0% | |
| ATGTCTCACCTCATCTTCTG+TGG | + | chr3.3:64758914-64758933 | None:intergenic | 45.0% | |
| CCTTAAAGCAAGCCAAGAGA+AGG | - | chr3.3:64758750-64758769 | MS.gene29779:intron | 45.0% | |
| CTAGGAAGTGGGTCAGAAAT+AGG | + | chr3.3:64757632-64757651 | None:intergenic | 45.0% | |
| CTTACTAGTAGAGGAAGGTG+TGG | + | chr3.3:64757531-64757550 | None:intergenic | 45.0% | |
| GAGGTATAGGGTAAGTCACA+TGG | - | chr3.3:64758036-64758055 | MS.gene29779:CDS | 45.0% | |
| GATACCCGCCAAAGATAAAG+AGG | + | chr3.3:64758193-64758212 | None:intergenic | 45.0% | |
| GGAAGCAACGACCTAAATCT+TGG | - | chr3.3:64757408-64757427 | MS.gene29779:CDS | 45.0% | |
| GGCAAAAGGGGAGAATGTAA+TGG | + | chr3.3:64757435-64757454 | None:intergenic | 45.0% | |
| GGTGTCTTACTAGTAGAGGA+AGG | + | chr3.3:64757536-64757555 | None:intergenic | 45.0% | |
| GTCGAAGAATGGGATTTGAG+TGG | - | chr3.3:64757908-64757927 | MS.gene29779:intron | 45.0% | |
| GTGATGTCAAGGTGATCACA+CGG | + | chr3.3:64758139-64758158 | None:intergenic | 45.0% | |
| TAAACTGGAAGGAATTCCGG+AGG | + | chr3.3:64759052-64759071 | None:intergenic | 45.0% | |
| TACTGTAGGGACTGTTGTGA+AGG | - | chr3.3:64757958-64757977 | MS.gene29779:intron | 45.0% | |
| TGATAGCATCAGATGGGTGA+GGG | - | chr3.3:64758934-64758953 | MS.gene29779:CDS | 45.0% | |
| TGTGAAGGTAGAGGATGATG+AGG | - | chr3.3:64757973-64757992 | MS.gene29779:intron | 45.0% | |
| TTAGGTCGTTGCTTCCTTCT+TGG | + | chr3.3:64757404-64757423 | None:intergenic | 45.0% | |
| ! | ACTTTGGAAGAGAGACCAGA+AGG | - | chr3.3:64757672-64757691 | MS.gene29779:intron | 45.0% |
| ! | ATGGATTTGGAACGACGGTT+TGG | + | chr3.3:64757491-64757510 | None:intergenic | 45.0% |
| ! | CTTTGGAAGAGAGACCAGAA+GGG | - | chr3.3:64757673-64757692 | MS.gene29779:intron | 45.0% |
| ! | TTGATAGCATCAGATGGGTG+AGG | - | chr3.3:64758933-64758952 | MS.gene29779:CDS | 45.0% |
| !! | CCTTCTCTTGGCTTGCTTTA+AGG | + | chr3.3:64758753-64758772 | None:intergenic | 45.0% |
| !! | CTATTTCTGACCCACTTCCT+AGG | - | chr3.3:64757630-64757649 | MS.gene29779:CDS | 45.0% |
| !! | TCTCTTGGCTTGCTTTAAGG+AGG | + | chr3.3:64758750-64758769 | None:intergenic | 45.0% |
| !! | ATAAACATTTAAATTATAAA+AGG | + | chr3.3:64757565-64757584 | None:intergenic | 5.0% |
| !! | TAAACATTTAAATTATAAAA+GGG | + | chr3.3:64757564-64757583 | None:intergenic | 5.0% |
| AAGGGTCCGAGTCATCTGAT+GGG | - | chr3.3:64757691-64757710 | MS.gene29779:intron | 50.0% | |
| AGGGACTGTTGTGAAGGTAG+AGG | - | chr3.3:64757964-64757983 | MS.gene29779:intron | 50.0% | |
| AGTGCGCAGAGGAAAACAGA+AGG | + | chr3.3:64759428-64759447 | None:intergenic | 50.0% | |
| CTCTTCCAAAGTGTGCTTGC+TGG | + | chr3.3:64757664-64757683 | None:intergenic | 50.0% | |
| CTGACCCACTTCCTAGGTAA+TGG | - | chr3.3:64757636-64757655 | MS.gene29779:CDS | 50.0% | |
| GATCAGCAACACCCTTCTCT+TGG | + | chr3.3:64758765-64758784 | None:intergenic | 50.0% | |
| GCACACTTAACAGCCAACGA+AGG | - | chr3.3:64759025-64759044 | MS.gene29779:CDS | 50.0% | |
| GCAGCAAGGTCTTAACTCCA+TGG | + | chr3.3:64757874-64757893 | None:intergenic | 50.0% | |
| GGAGCCATTACCTAGGAAGT+GGG | + | chr3.3:64757643-64757662 | None:intergenic | 50.0% | |
| GGGGAACAAGCACATAACGT+AGG | - | chr3.3:64758802-64758821 | MS.gene29779:intron | 50.0% | |
| GTAGAGGATGATGAGGACGA+AGG | - | chr3.3:64757980-64757999 | MS.gene29779:intron | 50.0% | |
| TCTTCTGGTCTCACAACGTG+TGG | - | chr3.3:64758825-64758844 | MS.gene29779:intron | 50.0% | |
| TGGAGCCATTACCTAGGAAG+TGG | + | chr3.3:64757644-64757663 | None:intergenic | 50.0% | |
| ! | GGAAGGTGTGGGTTTCTCAA+AGG | + | chr3.3:64757519-64757538 | None:intergenic | 50.0% |
| ! | TAACTTGCCTCATGAGGTGC+AGG | + | chr3.3:64759457-64759476 | None:intergenic | 50.0% |
| ! | TGCTTCCTTCTTGGCTTTCG+AGG | + | chr3.3:64757395-64757414 | None:intergenic | 50.0% |
| AACAGCCAACGAAGGACCTC+CGG | - | chr3.3:64759033-64759052 | MS.gene29779:CDS | 55.0% | |
| AGGGCATACGAGTAAGAGCG+CGG | + | chr3.3:64757457-64757476 | None:intergenic | 55.0% | |
| AGGGTCCGAGTCATCTGATG+GGG | - | chr3.3:64757692-64757711 | MS.gene29779:intron | 55.0% | |
| GAAGGGTCCGAGTCATCTGA+TGG | - | chr3.3:64757690-64757709 | MS.gene29779:intron | 55.0% | |
| GAATTCCGGAGGTCCTTCGT+TGG | + | chr3.3:64759041-64759060 | None:intergenic | 55.0% | |
| GTCATGGGCCACAGAAGATG+AGG | - | chr3.3:64758903-64758922 | MS.gene29779:CDS | 55.0% | |
| GTGGTAAAAGCTGGGGAGGA+AGG | + | chr3.3:64758855-64758874 | None:intergenic | 55.0% | |
| TGGCTCCAGCAAGCACACTT+TGG | - | chr3.3:64757656-64757675 | MS.gene29779:CDS | 55.0% | |
| ! | ACGGAGCGATGATAGCGAAG+AGG | - | chr3.3:64759270-64759289 | MS.gene29779:intron | 55.0% |
| ! | AGTAAGAGCGCGGGCAAAAG+GGG | + | chr3.3:64757447-64757466 | None:intergenic | 55.0% |
| ! | GAGTAAGAGCGCGGGCAAAA+GGG | + | chr3.3:64757448-64757467 | None:intergenic | 55.0% |
| ! | GCTTGCTGGAGCCATTACCT+AGG | + | chr3.3:64757650-64757669 | None:intergenic | 55.0% |
| ! | TCAGATGACTCGGACCCTTC+TGG | + | chr3.3:64757690-64757709 | None:intergenic | 55.0% |
| TCAGCAGCCTGCACCTCATG+AGG | - | chr3.3:64759447-64759466 | MS.gene29779:CDS | 60.0% | |
| ! | CGAGTAAGAGCGCGGGCAAA+AGG | + | chr3.3:64757449-64757468 | None:intergenic | 60.0% |
| ! | GGGCATACGAGTAAGAGCGC+GGG | + | chr3.3:64757456-64757475 | None:intergenic | 60.0% |
| GCAGGCTGCTGAGTGCGCAG+AGG | + | chr3.3:64759439-64759458 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 64757389 | 64759531 | 64757389 | ID=MS.gene29779 |
| chr3.3 | mRNA | 64757389 | 64759531 | 64757389 | ID=MS.gene29779.t1;Parent=MS.gene29779 |
| chr3.3 | exon | 64759375 | 64759531 | 64759375 | ID=MS.gene29779.t1.exon1;Parent=MS.gene29779.t1 |
| chr3.3 | CDS | 64759375 | 64759531 | 64759375 | ID=cds.MS.gene29779.t1;Parent=MS.gene29779.t1 |
| chr3.3 | exon | 64759198 | 64759268 | 64759198 | ID=MS.gene29779.t1.exon2;Parent=MS.gene29779.t1 |
| chr3.3 | CDS | 64759198 | 64759268 | 64759198 | ID=cds.MS.gene29779.t1;Parent=MS.gene29779.t1 |
| chr3.3 | exon | 64758875 | 64759099 | 64758875 | ID=MS.gene29779.t1.exon3;Parent=MS.gene29779.t1 |
| chr3.3 | CDS | 64758875 | 64759099 | 64758875 | ID=cds.MS.gene29779.t1;Parent=MS.gene29779.t1 |
| chr3.3 | exon | 64757996 | 64758208 | 64757996 | ID=MS.gene29779.t1.exon4;Parent=MS.gene29779.t1 |
| chr3.3 | CDS | 64757996 | 64758208 | 64757996 | ID=cds.MS.gene29779.t1;Parent=MS.gene29779.t1 |
| chr3.3 | exon | 64757817 | 64757882 | 64757817 | ID=MS.gene29779.t1.exon5;Parent=MS.gene29779.t1 |
| chr3.3 | CDS | 64757817 | 64757882 | 64757817 | ID=cds.MS.gene29779.t1;Parent=MS.gene29779.t1 |
| chr3.3 | exon | 64757587 | 64757679 | 64757587 | ID=MS.gene29779.t1.exon6;Parent=MS.gene29779.t1 |
| chr3.3 | CDS | 64757587 | 64757679 | 64757587 | ID=cds.MS.gene29779.t1;Parent=MS.gene29779.t1 |
| chr3.3 | exon | 64757389 | 64757508 | 64757389 | ID=MS.gene29779.t1.exon7;Parent=MS.gene29779.t1 |
| chr3.3 | CDS | 64757389 | 64757508 | 64757389 | ID=cds.MS.gene29779.t1;Parent=MS.gene29779.t1 |
| Gene Sequence |
| Protein sequence |
