Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29845.t1 | XP_013460855.1 | 98.8 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 3.30E-188 | 667.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29845.t1 | Q6MEW4 | 60.6 | 221 | 87 | 0 | 97 | 317 | 4 | 224 | 1.3e-76 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29845.t1 | A0A072UYQ0 | 98.8 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 2.3e-188 | 667.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050577 | MS.gene29845 | -0.801552 | 8.53E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene29845 | -0.807731 | 4.38E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene29845 | -0.808081 | 3.69E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene29845 | -0.801442 | 8.99E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene29845 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene29845 | -0.801973 | 6.99E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene29845 | -0.808629 | 2.82E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29845.t1 | MTR_3g074040 | 98.844 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 0.0 | 706 |
| MS.gene29845.t1 | MTR_8g091330 | 79.842 | 253 | 51 | 0 | 93 | 345 | 74 | 326 | 1.18e-156 | 442 |
| MS.gene29845.t1 | MTR_8g091330 | 79.842 | 253 | 51 | 0 | 93 | 345 | 66 | 318 | 1.39e-156 | 442 |
| MS.gene29845.t1 | MTR_8g091330 | 80.000 | 240 | 48 | 0 | 106 | 345 | 1 | 240 | 7.15e-150 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29845.t1 | AT1G22170 | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 8.70e-179 | 499 |
| MS.gene29845.t1 | AT1G22170 | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 8.70e-179 | 499 |
| MS.gene29845.t1 | AT1G78050 | 72.000 | 325 | 79 | 4 | 25 | 343 | 9 | 327 | 9.42e-172 | 481 |
Find 79 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACACCGCTTCTGATATTT+TGG | 0.174047 | 3.4:-72644818 | None:intergenic |
| ATTTATCATACTTGATTTCT+TGG | 0.211753 | 3.4:-72645009 | None:intergenic |
| ACGACTCACCGTGTCGAATA+AGG | 0.265042 | 3.4:-72645215 | None:intergenic |
| CTACCTTCTTACGGCGGTGC+TGG | 0.280926 | 3.4:-72645404 | None:intergenic |
| ACCTACTTGGTCTCTGAAAT+AGG | 0.318239 | 3.4:-72646046 | None:intergenic |
| ATATCAGAAGCGGTGTATTA+AGG | 0.323655 | 3.4:+72644823 | MS.gene29845:CDS |
| TCAAAGAAGGAAGATTCATT+AGG | 0.358232 | 3.4:+72646594 | MS.gene29845:CDS |
| TTGCAATCTCATTCTCATCT+TGG | 0.370490 | 3.4:+72644780 | MS.gene29845:CDS |
| ATTGAACCCCAACTTCTATC+TGG | 0.372989 | 3.4:+72646362 | MS.gene29845:CDS |
| GAAGTATGTCACCATGCTAT+TGG | 0.383236 | 3.4:+72644753 | MS.gene29845:CDS |
| GATGTAAATATGAGATCAAC+TGG | 0.389772 | 3.4:-72645339 | None:intergenic |
| TAAAATGCATACCTTGGTAT+AGG | 0.393283 | 3.4:-72646657 | None:intergenic |
| TACAGCGTTTGGCTCTTTAC+AGG | 0.396467 | 3.4:+72647474 | MS.gene29845:intron |
| TCCTCCCAATGGTGAAAGTC+TGG | 0.399875 | 3.4:+72645999 | MS.gene29845:CDS |
| CATTCTTTCCAGATAGAAGT+TGG | 0.400888 | 3.4:-72646370 | None:intergenic |
| TTTGTCGAGATACATGATAA+TGG | 0.419771 | 3.4:-72646426 | None:intergenic |
| CAAGAAACAGCAGACAGATA+TGG | 0.420753 | 3.4:+72645934 | MS.gene29845:CDS |
| TGATTTCTTGGAAGTGTCAT+TGG | 0.426824 | 3.4:-72644997 | None:intergenic |
| CCCATAAAACCAACTGAAGC+TGG | 0.429711 | 3.4:+72646626 | MS.gene29845:CDS |
| ATTCTTTCCAGATAGAAGTT+GGG | 0.435809 | 3.4:-72646369 | None:intergenic |
| CAACAACTGACGTCTGTGAA+TGG | 0.445999 | 3.4:-72644944 | None:intergenic |
| AGTTGCCAAGCTGCTATGAC+TGG | 0.450681 | 3.4:-72645769 | None:intergenic |
| ATTAGTTTAGAACTGTCAAC+TGG | 0.450749 | 3.4:+72646551 | MS.gene29845:CDS |
| TTTCAGGTATGGAGAACTAC+AGG | 0.452952 | 3.4:+72645900 | MS.gene29845:intron |
| CTCTCGTTGTGCATAACAAT+AGG | 0.456310 | 3.4:-72645688 | None:intergenic |
| TGCAGTAATGGCTTGTCAAA+GGG | 0.459448 | 3.4:+72644867 | MS.gene29845:CDS |
| TCATTCTCGCTACCTTCTTA+CGG | 0.461824 | 3.4:-72645413 | None:intergenic |
| CTTACGGCGGTGCTGGGTCA+TGG | 0.466672 | 3.4:-72645397 | None:intergenic |
| TACCTTCTTACGGCGGTGCT+GGG | 0.479212 | 3.4:-72645403 | None:intergenic |
| TCTTTGAAAATGTAAAGCAT+TGG | 0.479538 | 3.4:-72646578 | None:intergenic |
| GGCTCTTTACAGGCAGAAGT+TGG | 0.481694 | 3.4:+72647484 | MS.gene29845:CDS |
| AACAACTGACGTCTGTGAAT+GGG | 0.484469 | 3.4:-72644943 | None:intergenic |
| ATTTCCAGACTTTCACCATT+GGG | 0.485719 | 3.4:-72646003 | None:intergenic |
| CATAGCTTCGGCGCCACTCA+TGG | 0.486599 | 3.4:-72645969 | None:intergenic |
| ATAGATGAGGCAATTGAAGC+TGG | 0.487774 | 3.4:+72645297 | MS.gene29845:CDS |
| AAGGGAATAAGTAGCCGCTT+TGG | 0.491574 | 3.4:+72644885 | MS.gene29845:CDS |
| TTCGACACGGTGAGTCGTTG+TGG | 0.492540 | 3.4:+72645220 | MS.gene29845:CDS |
| CATTTCCAGACTTTCACCAT+TGG | 0.497995 | 3.4:-72646004 | None:intergenic |
| ACAGACGTCAGTTGTTGATC+CGG | 0.498795 | 3.4:+72644950 | MS.gene29845:CDS |
| AATGAGAAGAATTTGTTCAC+AGG | 0.510239 | 3.4:+72645243 | MS.gene29845:CDS |
| CTGCAGTAATGGCTTGTCAA+AGG | 0.514800 | 3.4:+72644866 | MS.gene29845:CDS |
| TGTATTAAGGTTGGCGACAA+AGG | 0.518818 | 3.4:+72644836 | MS.gene29845:CDS |
| TTCTTTCCAGATAGAAGTTG+GGG | 0.521049 | 3.4:-72646368 | None:intergenic |
| AAGAAGGAAGATTCATTAGG+AGG | 0.521386 | 3.4:+72646597 | MS.gene29845:CDS |
| AAGGAAGATTCATTAGGAGG+GGG | 0.527349 | 3.4:+72646600 | MS.gene29845:CDS |
| GTGCTGGGTCATGGCAAGCA+TGG | 0.530804 | 3.4:-72645388 | None:intergenic |
| GAATTACAATACAATTCCTC+TGG | 0.533183 | 3.4:-72644908 | None:intergenic |
| GAGGAGGTATGTCATAGCTT+CGG | 0.535709 | 3.4:-72645981 | None:intergenic |
| GACCCAGCACCGCCGTAAGA+AGG | 0.536334 | 3.4:+72645401 | MS.gene29845:CDS |
| TCTATACCCTTCTTGCTAAG+TGG | 0.548267 | 3.4:-72645279 | None:intergenic |
| AGAAGGAAGATTCATTAGGA+GGG | 0.551932 | 3.4:+72646598 | MS.gene29845:CDS |
| AGACTTTCACCATTGGGAGG+AGG | 0.552095 | 3.4:-72645997 | None:intergenic |
| CAGAAGCGGTGTATTAAGGT+TGG | 0.552496 | 3.4:+72644827 | MS.gene29845:CDS |
| TCTCGACAAATTAACTTCCC+AGG | 0.565688 | 3.4:+72646439 | MS.gene29845:CDS |
| GCATAAACTCCAGCTTCAGT+TGG | 0.565994 | 3.4:-72646635 | None:intergenic |
| GAAGGAAGATTCATTAGGAG+GGG | 0.570970 | 3.4:+72646599 | MS.gene29845:CDS |
| TGATGTACCACTTAGCAAGA+AGG | 0.585970 | 3.4:+72645272 | MS.gene29845:CDS |
| GAATAGCCCAATCACCTCCT+GGG | 0.586449 | 3.4:-72646456 | None:intergenic |
| CCATTCCAGTCATAGCAGCT+TGG | 0.588646 | 3.4:+72645764 | MS.gene29845:CDS |
| CATCACCAAAATATCAGAAG+CGG | 0.592490 | 3.4:+72644813 | MS.gene29845:CDS |
| AGAGTGAACAAGCAAAGGCA+TGG | 0.594259 | 3.4:+72645707 | MS.gene29845:CDS |
| TAAGTAGCCGCTTTGGCCAG+AGG | 0.595270 | 3.4:+72644892 | MS.gene29845:CDS |
| GATGTACCACTTAGCAAGAA+GGG | 0.602199 | 3.4:+72645273 | MS.gene29845:CDS |
| TCCAGACTTTCACCATTGGG+AGG | 0.603226 | 3.4:-72646000 | None:intergenic |
| CCAAGCTGCTATGACTGGAA+TGG | 0.606063 | 3.4:-72645764 | None:intergenic |
| CAACGAGAGTGAACAAGCAA+AGG | 0.606715 | 3.4:+72645702 | MS.gene29845:CDS |
| TACAATTCCTCTGGCCAAAG+CGG | 0.621755 | 3.4:-72644899 | None:intergenic |
| ATGTTATGATTGCCGCACAC+GGG | 0.631044 | 3.4:+72646390 | MS.gene29845:CDS |
| AATGTTATGATTGCCGCACA+CGG | 0.634751 | 3.4:+72646389 | MS.gene29845:CDS |
| TAGCAAGAAGGGTATAGATG+AGG | 0.640367 | 3.4:+72645284 | MS.gene29845:CDS |
| GTAAAGAACAAGTCCATGAG+TGG | 0.643785 | 3.4:+72645956 | MS.gene29845:CDS |
| TCTCAATGAATTCCCGTGTG+CGG | 0.651372 | 3.4:-72646402 | None:intergenic |
| TATGACATACCTCCTCCCAA+TGG | 0.657183 | 3.4:+72645988 | MS.gene29845:CDS |
| TTCAGGTATGGAGAACTACA+GGG | 0.659499 | 3.4:+72645901 | MS.gene29845:intron |
| GCTTTGATCCTTATTCGACA+CGG | 0.660091 | 3.4:+72645207 | MS.gene29845:CDS |
| ATTGCAAAGAGCCAATAGCA+TGG | 0.664561 | 3.4:-72644764 | None:intergenic |
| TTCTCGCTACCTTCTTACGG+CGG | 0.686843 | 3.4:-72645410 | None:intergenic |
| TGGAGTTTATGCCTATACCA+AGG | 0.695146 | 3.4:+72646646 | MS.gene29845:CDS |
| CGACAAATTAACTTCCCAGG+AGG | 0.718042 | 3.4:+72646442 | MS.gene29845:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATCATCTTAAAT+GGG | - | chr3.4:72646702-72646721 | None:intergenic | 10.0% |
| !! | TCAATTAATATAAATCTTAA+AGG | - | chr3.4:72646988-72647007 | None:intergenic | 10.0% |
| !! | AAAAAATGTGAACTTATAAT+AGG | + | chr3.4:72646097-72646116 | MS.gene29845:intron | 15.0% |
| !! | CTAAAAAAAATCATCTTAAA+TGG | - | chr3.4:72646703-72646722 | None:intergenic | 15.0% |
| !!! | AGAAAGTTTTGATTTAAAAA+TGG | + | chr3.4:72646730-72646749 | MS.gene29845:intron | 15.0% |
| !!! | CATTTAAGATGATTTTTTTT+AGG | + | chr3.4:72646701-72646720 | MS.gene29845:intron | 15.0% |
| !! | ATTTATCATACTTGATTTCT+TGG | - | chr3.4:72645012-72645031 | None:intergenic | 20.0% |
| !! | TTAGAGAATATTAGTAAGTA+TGG | + | chr3.4:72645507-72645526 | MS.gene29845:intron | 20.0% |
| !! | TTCATAATTATTATCCTTTC+AGG | + | chr3.4:72645884-72645903 | MS.gene29845:intron | 20.0% |
| !!! | TATAACAAAGACTAATTTTC+TGG | - | chr3.4:72645602-72645621 | None:intergenic | 20.0% |
| !!! | TATACATATTGTAACTTGTA+AGG | + | chr3.4:72646263-72646282 | MS.gene29845:intron | 20.0% |
| ! | AAAAATCATCTTAAATGGGA+CGG | - | chr3.4:72646698-72646717 | None:intergenic | 25.0% |
| ! | AAAAATGGATATTGTTTGTC+CGG | + | chr3.4:72646745-72646764 | MS.gene29845:intron | 25.0% |
| ! | AATTCTACCAGAAAGAAAAA+GGG | - | chr3.4:72647105-72647124 | None:intergenic | 25.0% |
| ! | AGGAGAAGTTTCAAAAATTA+AGG | - | chr3.4:72645826-72645845 | None:intergenic | 25.0% |
| ! | AGGTATTACAACTTTCTATT+AGG | - | chr3.4:72647160-72647179 | None:intergenic | 25.0% |
| ! | AGTTGAAATTGTCATATGAT+TGG | + | chr3.4:72645137-72645156 | MS.gene29845:intron | 25.0% |
| ! | ATTAGGACTAGATTTATCTA+AGG | - | chr3.4:72647143-72647162 | None:intergenic | 25.0% |
| ! | ATTCATTTACTACATTTGTC+TGG | - | chr3.4:72646215-72646234 | None:intergenic | 25.0% |
| ! | TTGAATTTCATTCATGATTG+AGG | + | chr3.4:72647004-72647023 | MS.gene29845:intron | 25.0% |
| !! | AATTATTATCCTTTCAGGTA+TGG | + | chr3.4:72645889-72645908 | MS.gene29845:intron | 25.0% |
| !! | ATGCTTTACATTTTCAAAGA+AGG | + | chr3.4:72646581-72646600 | MS.gene29845:CDS | 25.0% |
| !! | TCTATGTTTTATATTGCTAG+TGG | - | chr3.4:72646794-72646813 | None:intergenic | 25.0% |
| !! | TCTTTGAAAATGTAAAGCAT+TGG | - | chr3.4:72646581-72646600 | None:intergenic | 25.0% |
| !!! | AACTTGTAAGGTCAATTTTT+TGG | + | chr3.4:72646275-72646294 | MS.gene29845:intron | 25.0% |
| !!! | TCATAGTTAAGTGTTTTTTG+AGG | + | chr3.4:72646165-72646184 | MS.gene29845:intron | 25.0% |
| AAACAAAATTTCCACCTACT+TGG | - | chr3.4:72646062-72646081 | None:intergenic | 30.0% | |
| ACTAATAACCTGTCAAAAAG+CGG | - | chr3.4:72646537-72646556 | None:intergenic | 30.0% | |
| ACTTCTTGTAATCAAGTACT+AGG | + | chr3.4:72646926-72646945 | MS.gene29845:intron | 30.0% | |
| ATCTGCAATATTGGTATCAA+TGG | - | chr3.4:72646344-72646363 | None:intergenic | 30.0% | |
| ATTCTTTCCAGATAGAAGTT+GGG | - | chr3.4:72646372-72646391 | None:intergenic | 30.0% | |
| CAATTCTACCAGAAAGAAAA+AGG | - | chr3.4:72647106-72647125 | None:intergenic | 30.0% | |
| CTCGATCAAAATATTTCTCT+TGG | + | chr3.4:72647195-72647214 | MS.gene29845:intron | 30.0% | |
| GAATTACAATACAATTCCTC+TGG | - | chr3.4:72644911-72644930 | None:intergenic | 30.0% | |
| GATGTAAATATGAGATCAAC+TGG | - | chr3.4:72645342-72645361 | None:intergenic | 30.0% | |
| GCAACCAACAAAAATATACT+CGG | - | chr3.4:72645071-72645090 | None:intergenic | 30.0% | |
| TAAAATGCATACCTTGGTAT+AGG | - | chr3.4:72646660-72646679 | None:intergenic | 30.0% | |
| TAAGCAAACATGTCAAACTA+AGG | - | chr3.4:72647060-72647079 | None:intergenic | 30.0% | |
| TCAAAGAAGGAAGATTCATT+AGG | + | chr3.4:72646594-72646613 | MS.gene29845:CDS | 30.0% | |
| TGGTTGAAGTTATCTTCATA+CGG | + | chr3.4:72646300-72646319 | MS.gene29845:intron | 30.0% | |
| TTAAATGGGACGGAATATAA+AGG | - | chr3.4:72646688-72646707 | None:intergenic | 30.0% | |
| TTAACTATGAAGTTCAACCA+GGG | - | chr3.4:72646155-72646174 | None:intergenic | 30.0% | |
| TTTGTCGAGATACATGATAA+TGG | - | chr3.4:72646429-72646448 | None:intergenic | 30.0% | |
| ! | AAGGATTTTATCTGCAGTAA+TGG | + | chr3.4:72644855-72644874 | MS.gene29845:CDS | 30.0% |
| ! | AATGAGAAGAATTTGTTCAC+AGG | + | chr3.4:72645243-72645262 | MS.gene29845:CDS | 30.0% |
| ! | ATTAGTTTAGAACTGTCAAC+TGG | + | chr3.4:72646551-72646570 | MS.gene29845:CDS | 30.0% |
| ! | TTCTTATCCCTTTTTCTTTC+TGG | + | chr3.4:72647095-72647114 | MS.gene29845:intron | 30.0% |
| ! | TTTTGATCGAGAAAATCAAC+AGG | - | chr3.4:72647186-72647205 | None:intergenic | 30.0% |
| !! | CATAGAACATCAAAAGTGTT+TGG | + | chr3.4:72646808-72646827 | MS.gene29845:intron | 30.0% |
| !!! | AATGACTGACACTTATTTTG+AGG | - | chr3.4:72647291-72647310 | None:intergenic | 30.0% |
| !!! | GTAAGGTCAATTTTTTGGTA+TGG | + | chr3.4:72646280-72646299 | MS.gene29845:intron | 30.0% |
| AACCAAGTAAAGTCGTTAGT+GGG | - | chr3.4:72647455-72647474 | None:intergenic | 35.0% | |
| AAGAAGGAAGATTCATTAGG+AGG | + | chr3.4:72646597-72646616 | MS.gene29845:CDS | 35.0% | |
| AGAAGGAAGATTCATTAGGA+GGG | + | chr3.4:72646598-72646617 | MS.gene29845:CDS | 35.0% | |
| ATATCAGAAGCGGTGTATTA+AGG | + | chr3.4:72644823-72644842 | MS.gene29845:CDS | 35.0% | |
| ATTTCCAGACTTTCACCATT+GGG | - | chr3.4:72646006-72646025 | None:intergenic | 35.0% | |
| CATCACCAAAATATCAGAAG+CGG | + | chr3.4:72644813-72644832 | MS.gene29845:CDS | 35.0% | |
| CATTCTTTCCAGATAGAAGT+TGG | - | chr3.4:72646373-72646392 | None:intergenic | 35.0% | |
| CTAATAACCTGTCAAAAAGC+GGG | - | chr3.4:72646536-72646555 | None:intergenic | 35.0% | |
| CTTAACTATGAAGTTCAACC+AGG | - | chr3.4:72646156-72646175 | None:intergenic | 35.0% | |
| GTCGTATAAAATGCATACCT+TGG | - | chr3.4:72646666-72646685 | None:intergenic | 35.0% | |
| TAACCAAGTAAAGTCGTTAG+TGG | - | chr3.4:72647456-72647475 | None:intergenic | 35.0% | |
| TAAGTGTCAGTCATTAACGT+CGG | + | chr3.4:72647296-72647315 | MS.gene29845:intron | 35.0% | |
| TAATAACCTGTCAAAAAGCG+GGG | - | chr3.4:72646535-72646554 | None:intergenic | 35.0% | |
| TTCTTTCCAGATAGAAGTTG+GGG | - | chr3.4:72646371-72646390 | None:intergenic | 35.0% | |
| TTGCAATCTCATTCTCATCT+TGG | + | chr3.4:72644780-72644799 | MS.gene29845:CDS | 35.0% | |
| TTGGCATGAGTAAGAAATTC+TGG | + | chr3.4:72647234-72647253 | MS.gene29845:intron | 35.0% | |
| ! | ATACACCGCTTCTGATATTT+TGG | - | chr3.4:72644821-72644840 | None:intergenic | 35.0% |
| ! | TTCTTTCTGGTAGAATTGCA+AGG | + | chr3.4:72647108-72647127 | MS.gene29845:intron | 35.0% |
| !! | TGATTTCTTGGAAGTGTCAT+TGG | - | chr3.4:72645000-72645019 | None:intergenic | 35.0% |
| !! | TGGCTTTCTAAGATGTTAGT+TGG | + | chr3.4:72647215-72647234 | MS.gene29845:intron | 35.0% |
| !! | TGTGCCGAGTATATTTTTGT+TGG | + | chr3.4:72645064-72645083 | MS.gene29845:intron | 35.0% |
| !!! | ATTGGTGTTGCTTTTTGAAG+GGG | - | chr3.4:72644982-72645001 | None:intergenic | 35.0% |
| !!! | CATTGGTGTTGCTTTTTGAA+GGG | - | chr3.4:72644983-72645002 | None:intergenic | 35.0% |
| !!! | TCATTGGTGTTGCTTTTTGA+AGG | - | chr3.4:72644984-72645003 | None:intergenic | 35.0% |
| AACAACTGACGTCTGTGAAT+GGG | - | chr3.4:72644946-72644965 | None:intergenic | 40.0% | |
| AAGGAAGATTCATTAGGAGG+GGG | + | chr3.4:72646600-72646619 | MS.gene29845:CDS | 40.0% | |
| AAGTTCAACCAGGGAAAATG+GGG | - | chr3.4:72646146-72646165 | None:intergenic | 40.0% | |
| AAGTTGGATCATCGAGTGTT+AGG | + | chr3.4:72645097-72645116 | MS.gene29845:intron | 40.0% | |
| AATGTTATGATTGCCGCACA+CGG | + | chr3.4:72646389-72646408 | MS.gene29845:CDS | 40.0% | |
| ATAGATGAGGCAATTGAAGC+TGG | + | chr3.4:72645297-72645316 | MS.gene29845:CDS | 40.0% | |
| ATGGATATTGTTTGTCCGGA+AGG | + | chr3.4:72646749-72646768 | MS.gene29845:intron | 40.0% | |
| ATTGAACCCCAACTTCTATC+TGG | + | chr3.4:72646362-72646381 | MS.gene29845:CDS | 40.0% | |
| ATTGCAAAGAGCCAATAGCA+TGG | - | chr3.4:72644767-72644786 | None:intergenic | 40.0% | |
| CAAGAAACAGCAGACAGATA+TGG | + | chr3.4:72645934-72645953 | MS.gene29845:CDS | 40.0% | |
| CATTTCCAGACTTTCACCAT+TGG | - | chr3.4:72646007-72646026 | None:intergenic | 40.0% | |
| CTCTCGTTGTGCATAACAAT+AGG | - | chr3.4:72645691-72645710 | None:intergenic | 40.0% | |
| CTTTACTTGGTTACAGCGTT+TGG | + | chr3.4:72647463-72647482 | MS.gene29845:intron | 40.0% | |
| GAAGGAAGATTCATTAGGAG+GGG | + | chr3.4:72646599-72646618 | MS.gene29845:CDS | 40.0% | |
| GAAGTATGTCACCATGCTAT+TGG | + | chr3.4:72644753-72644772 | MS.gene29845:CDS | 40.0% | |
| GAAGTTCAACCAGGGAAAAT+GGG | - | chr3.4:72646147-72646166 | None:intergenic | 40.0% | |
| GATGTACCACTTAGCAAGAA+GGG | + | chr3.4:72645273-72645292 | MS.gene29845:CDS | 40.0% | |
| GCTTTGATCCTTATTCGACA+CGG | + | chr3.4:72645207-72645226 | MS.gene29845:CDS | 40.0% | |
| GTAAAGAACAAGTCCATGAG+TGG | + | chr3.4:72645956-72645975 | MS.gene29845:CDS | 40.0% | |
| GTCTAGATCGTATGTTGGAA+AGG | + | chr3.4:72646962-72646981 | MS.gene29845:intron | 40.0% | |
| TATTTCAGAGACCAAGTAGG+TGG | + | chr3.4:72646048-72646067 | MS.gene29845:intron | 40.0% | |
| TCATTCTCGCTACCTTCTTA+CGG | - | chr3.4:72645416-72645435 | None:intergenic | 40.0% | |
| TCGAGAAAATCAACAGGTCA+AGG | - | chr3.4:72647180-72647199 | None:intergenic | 40.0% | |
| TCTATACCCTTCTTGCTAAG+TGG | - | chr3.4:72645282-72645301 | None:intergenic | 40.0% | |
| TCTCGACAAATTAACTTCCC+AGG | + | chr3.4:72646439-72646458 | MS.gene29845:CDS | 40.0% | |
| TGAAGTTCAACCAGGGAAAA+TGG | - | chr3.4:72646148-72646167 | None:intergenic | 40.0% | |
| TGAGAGTCTAGATCGTATGT+TGG | + | chr3.4:72646957-72646976 | MS.gene29845:intron | 40.0% | |
| TGATGTACCACTTAGCAAGA+AGG | + | chr3.4:72645272-72645291 | MS.gene29845:CDS | 40.0% | |
| TGCTATTCAGCACGTTGTAA+AGG | - | chr3.4:72645846-72645865 | None:intergenic | 40.0% | |
| TGGAGTTTATGCCTATACCA+AGG | + | chr3.4:72646646-72646665 | MS.gene29845:CDS | 40.0% | |
| TGGGGTTCAATCTGCAATAT+TGG | - | chr3.4:72646353-72646372 | None:intergenic | 40.0% | |
| TGTAGTTCTCCATACCTGAA+AGG | - | chr3.4:72645901-72645920 | None:intergenic | 40.0% | |
| TGTATTAAGGTTGGCGACAA+AGG | + | chr3.4:72644836-72644855 | MS.gene29845:CDS | 40.0% | |
| TTACAACGTGCTGAATAGCA+CGG | + | chr3.4:72645846-72645865 | MS.gene29845:intron | 40.0% | |
| TTCAGGTATGGAGAACTACA+GGG | + | chr3.4:72645901-72645920 | MS.gene29845:intron | 40.0% | |
| ! | TAGCAAGAAGGGTATAGATG+AGG | + | chr3.4:72645284-72645303 | MS.gene29845:CDS | 40.0% |
| ! | TGCAGTAATGGCTTGTCAAA+GGG | + | chr3.4:72644867-72644886 | MS.gene29845:CDS | 40.0% |
| ! | TGTTGGTTGCTTCTTGAAGT+TGG | + | chr3.4:72645081-72645100 | MS.gene29845:intron | 40.0% |
| ! | TTTCAGGTATGGAGAACTAC+AGG | + | chr3.4:72645900-72645919 | MS.gene29845:intron | 40.0% |
| !! | ACCTACTTGGTCTCTGAAAT+AGG | - | chr3.4:72646049-72646068 | None:intergenic | 40.0% |
| !! | CTGATGCTCTAAAATGATGC+TGG | + | chr3.4:72647376-72647395 | MS.gene29845:intron | 40.0% |
| !! | TTAACCATTAACTTGCCTGC+AGG | + | chr3.4:72645663-72645682 | MS.gene29845:intron | 40.0% |
| !!! | ATTTTTCCCCGCTTTTTGAC+AGG | + | chr3.4:72646526-72646545 | MS.gene29845:intron | 40.0% |
| !!! | CCAGCTTCAGTTGGTTTTAT+GGG | - | chr3.4:72646629-72646648 | None:intergenic | 40.0% |
| !!! | TCCAGCTTCAGTTGGTTTTA+TGG | - | chr3.4:72646630-72646649 | None:intergenic | 40.0% |
| AAGGGAATAAGTAGCCGCTT+TGG | + | chr3.4:72644885-72644904 | MS.gene29845:CDS | 45.0% | |
| ACAGACGTCAGTTGTTGATC+CGG | + | chr3.4:72644950-72644969 | MS.gene29845:CDS | 45.0% | |
| AGAGTGAACAAGCAAAGGCA+TGG | + | chr3.4:72645707-72645726 | MS.gene29845:CDS | 45.0% | |
| ATGTTATGATTGCCGCACAC+GGG | + | chr3.4:72646390-72646409 | MS.gene29845:CDS | 45.0% | |
| CAAAGCTGCTTCATCTGAGT+TGG | - | chr3.4:72645193-72645212 | None:intergenic | 45.0% | |
| CAACAACTGACGTCTGTGAA+TGG | - | chr3.4:72644947-72644966 | None:intergenic | 45.0% | |
| CAACGAGAGTGAACAAGCAA+AGG | + | chr3.4:72645702-72645721 | MS.gene29845:CDS | 45.0% | |
| CAGAAGCGGTGTATTAAGGT+TGG | + | chr3.4:72644827-72644846 | MS.gene29845:CDS | 45.0% | |
| CCCATAAAACCAACTGAAGC+TGG | + | chr3.4:72646626-72646645 | MS.gene29845:CDS | 45.0% | |
| CGACAAATTAACTTCCCAGG+AGG | + | chr3.4:72646442-72646461 | MS.gene29845:CDS | 45.0% | |
| CTTCATGTCGCTATGTGCTA+TGG | + | chr3.4:72646847-72646866 | MS.gene29845:intron | 45.0% | |
| GCATAAACTCCAGCTTCAGT+TGG | - | chr3.4:72646638-72646657 | None:intergenic | 45.0% | |
| GCCTATTTCAGAGACCAAGT+AGG | + | chr3.4:72646045-72646064 | MS.gene29845:intron | 45.0% | |
| TAACTTCCCAGGAGGTGATT+GGG | + | chr3.4:72646450-72646469 | MS.gene29845:intron | 45.0% | |
| TACAATTCCTCTGGCCAAAG+CGG | - | chr3.4:72644902-72644921 | None:intergenic | 45.0% | |
| TATGACATACCTCCTCCCAA+TGG | + | chr3.4:72645988-72646007 | MS.gene29845:CDS | 45.0% | |
| TCTCAATGAATTCCCGTGTG+CGG | - | chr3.4:72646405-72646424 | None:intergenic | 45.0% | |
| TGCCCACTAACGACTTTACT+TGG | + | chr3.4:72647450-72647469 | MS.gene29845:intron | 45.0% | |
| TGGATCATCGAGTGTTAGGT+TGG | + | chr3.4:72645101-72645120 | MS.gene29845:intron | 45.0% | |
| TTAACTTCCCAGGAGGTGAT+TGG | + | chr3.4:72646449-72646468 | MS.gene29845:intron | 45.0% | |
| ! | CTGCAGTAATGGCTTGTCAA+AGG | + | chr3.4:72644866-72644885 | MS.gene29845:CDS | 45.0% |
| ! | GAGGAGGTATGTCATAGCTT+CGG | - | chr3.4:72645984-72646003 | None:intergenic | 45.0% |
| !! | CTTTTTGAAGGGGACAACAC+CGG | - | chr3.4:72644972-72644991 | None:intergenic | 45.0% |
| !! | TACAGCGTTTGGCTCTTTAC+AGG | + | chr3.4:72647474-72647493 | MS.gene29845:intron | 45.0% |
| ACGACTCACCGTGTCGAATA+AGG | - | chr3.4:72645218-72645237 | None:intergenic | 50.0% | |
| AGACTTTCACCATTGGGAGG+AGG | - | chr3.4:72646000-72646019 | None:intergenic | 50.0% | |
| AGTTGCCAAGCTGCTATGAC+TGG | - | chr3.4:72645772-72645791 | None:intergenic | 50.0% | |
| CCAAGCTGCTATGACTGGAA+TGG | - | chr3.4:72645767-72645786 | None:intergenic | 50.0% | |
| CCATTCCAGTCATAGCAGCT+TGG | + | chr3.4:72645764-72645783 | MS.gene29845:CDS | 50.0% | |
| GAATAGCCCAATCACCTCCT+GGG | - | chr3.4:72646459-72646478 | None:intergenic | 50.0% | |
| GCATAACAATAGGCACCTGC+AGG | - | chr3.4:72645681-72645700 | None:intergenic | 50.0% | |
| GGCTCTTTACAGGCAGAAGT+TGG | + | chr3.4:72647484-72647503 | MS.gene29845:CDS | 50.0% | |
| TCCAGACTTTCACCATTGGG+AGG | - | chr3.4:72646003-72646022 | None:intergenic | 50.0% | |
| TCCTCCCAATGGTGAAAGTC+TGG | + | chr3.4:72645999-72646018 | MS.gene29845:CDS | 50.0% | |
| TGAATAGCCCAATCACCTCC+TGG | - | chr3.4:72646460-72646479 | None:intergenic | 50.0% | |
| TTCAACCAGGGAAAATGGGG+TGG | - | chr3.4:72646143-72646162 | None:intergenic | 50.0% | |
| TTCTCGCTACCTTCTTACGG+CGG | - | chr3.4:72645413-72645432 | None:intergenic | 50.0% | |
| GGCACCTGCAGGCAAGTTAA+TGG | - | chr3.4:72645670-72645689 | None:intergenic | 55.0% | |
| GGGAAAATGGGGTGGAAGTG+CGG | - | chr3.4:72646135-72646154 | None:intergenic | 55.0% | |
| GTTTGTCCGGAAGGTTGCAG+TGG | + | chr3.4:72646758-72646777 | MS.gene29845:intron | 55.0% | |
| TACCTTCTTACGGCGGTGCT+GGG | - | chr3.4:72645406-72645425 | None:intergenic | 55.0% | |
| TTCGACACGGTGAGTCGTTG+TGG | + | chr3.4:72645220-72645239 | MS.gene29845:CDS | 55.0% | |
| ! | CAAGTGCCACTGCAACCTTC+CGG | - | chr3.4:72646767-72646786 | None:intergenic | 55.0% |
| ! | CACTTCCACCCCATTTTCCC+TGG | + | chr3.4:72646135-72646154 | MS.gene29845:intron | 55.0% |
| ! | TAAGTAGCCGCTTTGGCCAG+AGG | + | chr3.4:72644892-72644911 | MS.gene29845:CDS | 55.0% |
| CATAGCTTCGGCGCCACTCA+TGG | - | chr3.4:72645972-72645991 | None:intergenic | 60.0% | |
| CTACCTTCTTACGGCGGTGC+TGG | - | chr3.4:72645407-72645426 | None:intergenic | 60.0% | |
| GTGCTGGGTCATGGCAAGCA+TGG | - | chr3.4:72645391-72645410 | None:intergenic | 60.0% | |
| GACCCAGCACCGCCGTAAGA+AGG | + | chr3.4:72645401-72645420 | MS.gene29845:CDS | 65.0% | |
| ! | CTTACGGCGGTGCTGGGTCA+TGG | - | chr3.4:72645400-72645419 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72644744 | 72647520 | 72644744 | ID=MS.gene29845 |
| chr3.4 | mRNA | 72644744 | 72647520 | 72644744 | ID=MS.gene29845.t1;Parent=MS.gene29845 |
| chr3.4 | exon | 72644744 | 72645020 | 72644744 | ID=MS.gene29845.t1.exon1;Parent=MS.gene29845.t1 |
| chr3.4 | CDS | 72644744 | 72645020 | 72644744 | ID=cds.MS.gene29845.t1;Parent=MS.gene29845.t1 |
| chr3.4 | exon | 72645199 | 72645422 | 72645199 | ID=MS.gene29845.t1.exon2;Parent=MS.gene29845.t1 |
| chr3.4 | CDS | 72645199 | 72645422 | 72645199 | ID=cds.MS.gene29845.t1;Parent=MS.gene29845.t1 |
| chr3.4 | exon | 72645685 | 72645803 | 72645685 | ID=MS.gene29845.t1.exon3;Parent=MS.gene29845.t1 |
| chr3.4 | CDS | 72645685 | 72645803 | 72645685 | ID=cds.MS.gene29845.t1;Parent=MS.gene29845.t1 |
| chr3.4 | exon | 72645906 | 72646062 | 72645906 | ID=MS.gene29845.t1.exon4;Parent=MS.gene29845.t1 |
| chr3.4 | CDS | 72645906 | 72646062 | 72645906 | ID=cds.MS.gene29845.t1;Parent=MS.gene29845.t1 |
| chr3.4 | exon | 72646362 | 72646463 | 72646362 | ID=MS.gene29845.t1.exon5;Parent=MS.gene29845.t1 |
| chr3.4 | CDS | 72646362 | 72646463 | 72646362 | ID=cds.MS.gene29845.t1;Parent=MS.gene29845.t1 |
| chr3.4 | exon | 72646548 | 72646667 | 72646548 | ID=MS.gene29845.t1.exon6;Parent=MS.gene29845.t1 |
| chr3.4 | CDS | 72646548 | 72646667 | 72646548 | ID=cds.MS.gene29845.t1;Parent=MS.gene29845.t1 |
| chr3.4 | exon | 72647479 | 72647520 | 72647479 | ID=MS.gene29845.t1.exon7;Parent=MS.gene29845.t1 |
| chr3.4 | CDS | 72647479 | 72647520 | 72647479 | ID=cds.MS.gene29845.t1;Parent=MS.gene29845.t1 |
| Gene Sequence |
| Protein sequence |
