AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05080.t1 MTR_3g063250 98.000 400 8 0 1 400 1 400 0.0 786
MS.gene05080.t1 MTR_3g063250 97.820 367 8 0 1 367 1 367 0.0 720
MS.gene05080.t1 MTR_3g063240 86.957 322 41 1 79 400 7 327 0.0 560
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05080.t1 AT3G02690 75.610 328 75 2 69 395 89 412 3.56e-166 472

Find 113 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCGATGCTGCTTGCTTTC+AGG 0.060471 3.4:-65431913 MS.gene05080:CDS
GTACTTGCTGCTTTGTTATT+TGG 0.128361 3.4:-65430785 MS.gene05080:CDS
TACCTTCTGGTTTCAATGCT+TGG 0.281970 3.4:-65431959 MS.gene05080:CDS
TCTCACCTGTACAGCTTGTT+GGG 0.293813 3.4:-65428759 MS.gene05080:CDS
GTCGATGCTGCTTGCTTTCA+GGG 0.300946 3.4:-65431912 MS.gene05080:CDS
GCAGAAGACTTCAGCTGGTT+TGG 0.301404 3.4:-65431871 MS.gene05080:CDS
CAGAAGACTTCAGCTGGTTT+GGG 0.335089 3.4:-65431870 MS.gene05080:CDS
ATTGGAGTTGTTGGAGCTGC+CGG 0.341031 3.4:-65430755 MS.gene05080:CDS
GTGCTTAGGGGAAGCGTTAT+GGG 0.349859 3.4:-65432141 MS.gene05080:CDS
GGTGGATTCTGTTGATTTGC+CGG 0.362199 3.4:+65432268 None:intergenic
AGAGGAAGAGCTTTACCTTC+TGG 0.363399 3.4:-65431972 MS.gene05080:CDS
TGTGCTTAGGGGAAGCGTTA+TGG 0.370312 3.4:-65432142 MS.gene05080:CDS
TTCTCACCTGTACAGCTTGT+TGG 0.377272 3.4:-65428760 MS.gene05080:CDS
GGTGAGTCCATTGGAGTTGT+TGG 0.381294 3.4:-65430764 MS.gene05080:CDS
CGAGAAGAAGAGGGGAATTG+TGG 0.385531 3.4:+65432347 None:intergenic
GGAGCTGCCGGGCTTGTACT+TGG 0.385948 3.4:-65430743 MS.gene05080:CDS
AACAATGAGCCTGCTGTAAG+TGG 0.386921 3.4:-65429738 MS.gene05080:CDS
AGTTGCTCCCATCAAATGAT+AGG 0.387462 3.4:+65430425 None:intergenic
GCGGGTGGTGGTGTTGGTTA+AGG 0.401721 3.4:+65432394 None:intergenic
CATCGAAGAGACTGTGCTTA+GGG 0.402534 3.4:-65432154 MS.gene05080:CDS
TATTGATTCACAACCTTTGA+CGG 0.403423 3.4:-65430813 MS.gene05080:CDS
CGAAAATTGAGGCAAACATT+GGG 0.404211 3.4:+65429171 None:intergenic
TTTCAGGGGTTTCTTGCTGA+AGG 0.419771 3.4:-65431897 MS.gene05080:CDS
CACTGTGGGGAAGTGGGGAG+TGG 0.422259 3.4:-65430399 MS.gene05080:CDS
TTCCTTCGTCTTCTTCGGTT+AGG 0.426662 3.4:+65432195 None:intergenic
CCGAAAATTGAGGCAAACAT+TGG 0.438271 3.4:+65429170 None:intergenic
TGTGGGGAAGTGGGGAGTGG+TGG 0.438538 3.4:-65430396 MS.gene05080:CDS
ACCCATCCAGTTGCCATGAT+AGG 0.438828 3.4:+65430304 None:intergenic
TTGGAGTTGTTGGAGCTGCC+GGG 0.442346 3.4:-65430754 MS.gene05080:CDS
TTACCTGCCCTATCATTTGA+TGG 0.443344 3.4:-65430433 MS.gene05080:CDS
AACTTCTCACTGTGGGGAAG+TGG 0.443633 3.4:-65430406 MS.gene05080:CDS
AAAGAAGTGATTCCTAATTA+CGG 0.454305 3.4:-65432062 MS.gene05080:CDS
TCTGATCCTATCATGGCAAC+TGG 0.460438 3.4:-65430310 MS.gene05080:CDS
TTGCAGCATATGGTTATTGG+TGG 0.460764 3.4:-65429789 MS.gene05080:intron
TTGGTAGATTGCGTAGGAAC+AGG 0.464261 3.4:-65432236 MS.gene05080:CDS
CATGATAGGATCAGAGTACT+TGG 0.465171 3.4:+65430318 None:intergenic
TTCAGGGGTTTCTTGCTGAA+GGG 0.468219 3.4:-65431896 MS.gene05080:CDS
TTGTTATTTGGTGAGTCCAT+TGG 0.469846 3.4:-65430773 MS.gene05080:CDS
GTGGAAAAGCGAGAAGAAGA+GGG 0.476516 3.4:+65432338 None:intergenic
TTTGGAAGTGCTGTTAGCTA+TGG 0.483715 3.4:-65429660 MS.gene05080:CDS
GGTTAAGGTGACGGTGGTGA+AGG 0.486318 3.4:+65432409 None:intergenic
TCATCGAAGAGACTGTGCTT+AGG 0.486342 3.4:-65432155 MS.gene05080:CDS
GGTGGAAAAGCGAGAAGAAG+AGG 0.489558 3.4:+65432337 None:intergenic
GTACAGTTCAACGGATGTAT+TGG 0.491468 3.4:-65429703 MS.gene05080:CDS
ATGCGGAAACGGAGAGAAGA+TGG 0.492013 3.4:+65432311 None:intergenic
CTGGCCCCAACAAGCTGTAC+AGG 0.499277 3.4:+65428754 None:intergenic
GGGTTGCAGAAGACTTCAGC+TGG 0.500512 3.4:-65431876 MS.gene05080:CDS
CAAGTACTCTGATCCTATCA+TGG 0.508310 3.4:-65430317 MS.gene05080:CDS
ACTTCTCACTGTGGGGAAGT+GGG 0.511659 3.4:-65430405 MS.gene05080:CDS
GGTGGTGTTGGTTAAGGTGA+CGG 0.513546 3.4:+65432400 None:intergenic
GAAAGAGTAGCGGCGGGTGG+TGG 0.513851 3.4:+65432382 None:intergenic
GCAAGTACAGCCACCGTCAA+AGG 0.517053 3.4:+65430800 None:intergenic
ATCCTATCATGGCAACTGGA+TGG 0.518310 3.4:-65430306 MS.gene05080:CDS
GTAGCGGCGGGTGGTGGTGT+TGG 0.525807 3.4:+65432388 None:intergenic
GGGCTTGTACTTGGCGTCGT+AGG 0.527479 3.4:-65430734 MS.gene05080:CDS
TTGGCACTGTCATGGTTCGG+TGG 0.529695 3.4:-65430345 MS.gene05080:CDS
CTCACCTGTACAGCTTGTTG+GGG 0.533384 3.4:-65428758 MS.gene05080:CDS
TGGAGCATGGAATGCGGAAA+CGG 0.533737 3.4:+65432300 None:intergenic
TGGCACTGTCATGGTTCGGT+GGG 0.533959 3.4:-65430344 MS.gene05080:CDS
TACCTGCCCTATCATTTGAT+GGG 0.539425 3.4:-65430432 MS.gene05080:CDS
CTTCTCACTGTGGGGAAGTG+GGG 0.546730 3.4:-65430404 MS.gene05080:CDS
TGGGAGCAACTTCTCACTGT+GGG 0.546919 3.4:-65430413 MS.gene05080:CDS
GTTAAGGTGACGGTGGTGAA+GGG 0.547874 3.4:+65432410 None:intergenic
GGCAGCTCCAACAACTCCAA+TGG 0.552770 3.4:+65430757 None:intergenic
GCTTCTTGCAGCTCAGAGCA+TGG 0.554655 3.4:-65430371 MS.gene05080:CDS
TCCTATCATGGCAACTGGAT+GGG 0.555793 3.4:-65430305 MS.gene05080:intron
TTAAGACTCCCACTTACAGC+AGG 0.557189 3.4:+65429729 None:intergenic
GCAGCACCACGGCGACAGCA+TGG 0.560788 3.4:+65432439 None:intergenic
CGTAGGACTTGTGTTACTTG+AGG 0.562304 3.4:-65430717 MS.gene05080:intron
CTCCCATCAAATGATAGGGC+AGG 0.566112 3.4:+65430430 None:intergenic
CAGTTGGCACTGTCATGGTT+CGG 0.567605 3.4:-65430348 MS.gene05080:CDS
TTTCTGGGGAACTGCAATGG+TGG 0.568350 3.4:-65432090 MS.gene05080:CDS
TACTGTAGCTGCAATATACA+TGG 0.570176 3.4:-65428728 MS.gene05080:CDS
ATCTACCAACTCGAGGTCGG+TGG 0.578134 3.4:+65432250 None:intergenic
GCAACAAGAAGAAACCCAGC+TGG 0.582668 3.4:+65432008 None:intergenic
CATGGCAGTTGGCACTGTCA+TGG 0.583057 3.4:-65430353 MS.gene05080:CDS
GGGGAATTGTGGAGTGTGAG+AGG 0.584400 3.4:+65432358 None:intergenic
GTTGCTCCCATCAAATGATA+GGG 0.584772 3.4:+65430426 None:intergenic
TACGACGCCAAGTACAAGCC+CGG 0.585440 3.4:+65430736 None:intergenic
TCGATGCTGCTTGCTTTCAG+GGG 0.585931 3.4:-65431911 MS.gene05080:CDS
GCAGCTCAGAGCATGGCAGT+TGG 0.587376 3.4:-65430364 MS.gene05080:CDS
TGATTCACAACCTTTGACGG+TGG 0.594698 3.4:-65430810 MS.gene05080:CDS
ATCCAAGCATTGAAACCAGA+AGG 0.594844 3.4:+65431957 None:intergenic
ACGGAGAGAAGATGGAGTGG+TGG 0.595523 3.4:+65432319 None:intergenic
TGGAAAAGCGAGAAGAAGAG+GGG 0.596948 3.4:+65432339 None:intergenic
GCAGTCTTACCCGAAAATTG+AGG 0.600905 3.4:+65429160 None:intergenic
TAAGAATCGCGAATGCCACA+AGG 0.602922 3.4:+65429760 None:intergenic
CCATGCTCCAACAAAACCAC+CGG 0.603023 3.4:-65432287 MS.gene05080:CDS
GCAATCTACCAACTCGAGGT+CGG 0.604725 3.4:+65432247 None:intergenic
AGAGGTGAAAGAGTAGCGGC+GGG 0.615126 3.4:+65432376 None:intergenic
AGAATCCACCGACCTCGAGT+TGG 0.615914 3.4:-65432255 MS.gene05080:CDS
ACAATGAGCCTGCTGTAAGT+GGG 0.625638 3.4:-65429737 MS.gene05080:CDS
GAGAGGTGAAAGAGTAGCGG+CGG 0.626582 3.4:+65432375 None:intergenic
GGTGTTGGTTAAGGTGACGG+TGG 0.628057 3.4:+65432403 None:intergenic
TATTGCAGCTACAGTAACAC+TGG 0.628956 3.4:+65428735 None:intergenic
AAGAATCGCGAATGCCACAA+GGG 0.631679 3.4:+65429761 None:intergenic
GAAAATTGAGGCAAACATTG+GGG 0.640798 3.4:+65429172 None:intergenic
TCTTAAAGAGTACAGTTCAA+CGG 0.646276 3.4:-65429712 MS.gene05080:CDS
ATGGGAGCAACTTCTCACTG+TGG 0.649529 3.4:-65430414 MS.gene05080:CDS
GGTGAAAGAGTAGCGGCGGG+TGG 0.654425 3.4:+65432379 None:intergenic
ATCGAAGAGACTGTGCTTAG+GGG 0.657103 3.4:-65432153 MS.gene05080:CDS
GAAACGGAGAGAAGATGGAG+TGG 0.658221 3.4:+65432316 None:intergenic
TTAGGGGAAGCGTTATGGGA+AGG 0.660097 3.4:-65432137 MS.gene05080:CDS
AGAATCGCGAATGCCACAAG+GGG 0.663619 3.4:+65429762 None:intergenic
CTACGCAATCTACCAACTCG+AGG 0.669742 3.4:+65432243 None:intergenic
TGTGAGAGGTGAAAGAGTAG+CGG 0.670902 3.4:+65432372 None:intergenic
GGATTCTGTTGATTTGCCGG+TGG 0.671329 3.4:+65432271 None:intergenic
CTCGAGTTGGTAGATTGCGT+AGG 0.679030 3.4:-65432242 MS.gene05080:CDS
CTCCTAACCGAAGAAGACGA+AGG 0.687930 3.4:-65432197 MS.gene05080:CDS
AAGGGAGTTGAGCAGCACCA+CGG 0.694244 3.4:+65432428 None:intergenic
GGGAGCAACTTCTCACTGTG+GGG 0.700978 3.4:-65430412 MS.gene05080:CDS
TCGTGGCCATGCTGTCGCCG+TGG 0.709410 3.4:-65432445 None:intergenic
GAATCGCGAATGCCACAAGG+GGG 0.735698 3.4:+65429763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATAATTGTAAAAGA+TGG + chr3.4:65432146-65432165 None:intergenic 10.0%
!!! TTTCATTATATTTATTTTTG+CGG - chr3.4:65430989-65431008 MS.gene05080:intron 10.0%
!!! TTTTTTTTTTTTAAAGAAAG+TGG + chr3.4:65431708-65431727 None:intergenic 10.0%
!! AAAAAAAAAAAATCAAAACC+CGG + chr3.4:65432025-65432044 None:intergenic 15.0%
!! TAAAAATTACAAAATCAACT+AGG + chr3.4:65430610-65430629 None:intergenic 15.0%
!! TAAATATATGAATTTCAACA+AGG - chr3.4:65431593-65431612 MS.gene05080:intron 15.0%
!!! AAAATATTTGAATTTTCTAG+AGG + chr3.4:65432267-65432286 None:intergenic 15.0%
!!! AAAATCTTTTACATATATTG+TGG - chr3.4:65430522-65430541 MS.gene05080:intron 15.0%
!!! AAGATTTTGATTTCTAATTT+TGG + chr3.4:65430510-65430529 None:intergenic 15.0%
!!! AGATTTTGATTTCTAATTTT+GGG + chr3.4:65430509-65430528 None:intergenic 15.0%
!!! CAATTTGTTAAAAAAAAAAG+AGG - chr3.4:65431250-65431269 MS.gene05080:intron 15.0%
!!! CTTGATTTTTTAATTGAAAA+AGG + chr3.4:65430934-65430953 None:intergenic 15.0%
!! AAATATGTAAGTGTACAAAA+TGG + chr3.4:65431823-65431842 None:intergenic 20.0%
!! ACTAGTAGTACTATTAATAA+GGG - chr3.4:65429569-65429588 MS.gene05080:intron 20.0%
!! ATAAATGAAAATTCACAGAA+AGG + chr3.4:65431567-65431586 None:intergenic 20.0%
!! ATAATATGGTGTATTCTTTA+TGG + chr3.4:65431881-65431900 None:intergenic 20.0%
!! GATACTTCAATAAATTATGA+AGG + chr3.4:65432197-65432216 None:intergenic 20.0%
!! TAACATATCTATTCTACAAA+AGG + chr3.4:65429550-65429569 None:intergenic 20.0%
!! TAATATGGTGTATTCTTTAT+GGG + chr3.4:65431880-65431899 None:intergenic 20.0%
!! TACTAGTAGTACTATTAATA+AGG - chr3.4:65429568-65429587 MS.gene05080:intron 20.0%
!! TAGTGAAATGATGATTATAT+AGG - chr3.4:65431190-65431209 MS.gene05080:intron 20.0%
!!! ATGTTTTCTTAAAAAATGAG+AGG + chr3.4:65431735-65431754 None:intergenic 20.0%
!!! GATAATTTTATGCTATGAAA+CGG - chr3.4:65430890-65430909 MS.gene05080:intron 20.0%
!!! TAATTTTGGTTTTAACCTAA+AGG - chr3.4:65430450-65430469 MS.gene05080:intron 20.0%
!!! TACTTGAGGTATTTTAATTT+TGG - chr3.4:65430436-65430455 MS.gene05080:CDS 20.0%
!!! TGTTTTCTTAAAAAATGAGA+GGG + chr3.4:65431734-65431753 None:intergenic 20.0%
!!! TTTTAAATTGTAACGCAAAA+AGG + chr3.4:65431034-65431053 None:intergenic 20.0%
! AAAATCAGAAAGACAACTAA+TGG - chr3.4:65432072-65432091 MS.gene05080:CDS 25.0%
! AAAGAAGTGATTCCTAATTA+CGG - chr3.4:65429077-65429096 MS.gene05080:intron 25.0%
! AAATTATGAAGGATGTAAGT+GGG + chr3.4:65432186-65432205 None:intergenic 25.0%
! ACGAAAAAATGTGTATACAA+AGG + chr3.4:65432325-65432344 None:intergenic 25.0%
! CTATGTAGCAATTCTTTAAA+CGG - chr3.4:65432095-65432114 MS.gene05080:CDS 25.0%
! CTTTAGTGAATAAACATAGA+AGG + chr3.4:65430662-65430681 None:intergenic 25.0%
! GCACAATGTCAATAATAATA+TGG + chr3.4:65431895-65431914 None:intergenic 25.0%
! GTGTTTCATATTGATAGATA+TGG - chr3.4:65430178-65430197 MS.gene05080:intron 25.0%
! TAAATTATGAAGGATGTAAG+TGG + chr3.4:65432187-65432206 None:intergenic 25.0%
! TACTAATTACCATATTGAAG+AGG + chr3.4:65431782-65431801 None:intergenic 25.0%
! TCAAATGAAGCTTACATTTA+GGG - chr3.4:65429667-65429686 MS.gene05080:CDS 25.0%
! TGAATTAGAGCTTATAGTTA+GGG - chr3.4:65429624-65429643 MS.gene05080:intron 25.0%
! TGTTAAAAAAAAAAGAGGCA+TGG - chr3.4:65431255-65431274 MS.gene05080:intron 25.0%
! TTCAAATGAAGCTTACATTT+AGG - chr3.4:65429666-65429685 MS.gene05080:CDS 25.0%
! TTGAATTAGAGCTTATAGTT+AGG - chr3.4:65429623-65429642 MS.gene05080:intron 25.0%
!! AAATTCACACTTTTGTAAAC+TGG + chr3.4:65431070-65431089 None:intergenic 25.0%
!! AGTTTACAAAAGTGTGAATT+TGG - chr3.4:65431069-65431088 MS.gene05080:intron 25.0%
!! CTTATGTTTTATGTTGTAAC+CGG - chr3.4:65429989-65430008 MS.gene05080:intron 25.0%
!! GTTTACAAAAGTGTGAATTT+GGG - chr3.4:65431070-65431089 MS.gene05080:intron 25.0%
!! GTTTTCTTAAAAAATGAGAG+GGG + chr3.4:65431733-65431752 None:intergenic 25.0%
!! TTTACATATATTGTGGATTG+CGG - chr3.4:65430529-65430548 MS.gene05080:intron 25.0%
!! TTTTAGCATACAATTTCTCT+TGG - chr3.4:65430625-65430644 MS.gene05080:intron 25.0%
!!! ATTTTTTCGTTTGGTATTTC+AGG - chr3.4:65432335-65432354 MS.gene05080:CDS 25.0%
!!! TATTGATAGATATGGATTAG+AGG - chr3.4:65430186-65430205 MS.gene05080:intron 25.0%
!!! TATTTCAGGTTTTTGTATCT+CGG - chr3.4:65432349-65432368 MS.gene05080:CDS 25.0%
!!! TGTATACACATTTTTTCGTT+TGG - chr3.4:65432326-65432345 MS.gene05080:CDS 25.0%
AAAAGTTGGGGATTCATATT+TGG + chr3.4:65430019-65430038 None:intergenic 30.0%
AAACGTTGGATATATAAGAG+AGG - chr3.4:65429777-65429796 MS.gene05080:CDS 30.0%
AACTAGGTAATTGTATGATG+TGG + chr3.4:65430594-65430613 None:intergenic 30.0%
ACATAAAAACCCAAACATGT+TGG + chr3.4:65429902-65429921 None:intergenic 30.0%
ACTGTAGTGTAGTTCTTATT+TGG - chr3.4:65429946-65429965 MS.gene05080:intron 30.0%
ATAAAAACCCAAACATGTTG+GGG + chr3.4:65429900-65429919 None:intergenic 30.0%
ATTTGACCTTGTAACCTTAA+GGG - chr3.4:65431635-65431654 MS.gene05080:intron 30.0%
CAGATTCATATTGATAGACA+TGG + chr3.4:65430145-65430164 None:intergenic 30.0%
CATAAAAACCCAAACATGTT+GGG + chr3.4:65429901-65429920 None:intergenic 30.0%
CATCCATGTAAAATCCAAAA+CGG - chr3.4:65431752-65431771 MS.gene05080:intron 30.0%
! AATATCACCGTTCTTTTTCT+GGG - chr3.4:65429034-65429053 MS.gene05080:intron 30.0%
! ATATTTCTGCAACTATGATC+AGG + chr3.4:65431128-65431147 None:intergenic 30.0%
! CATGTTTGTGTATCTTTTTG+AGG - chr3.4:65432298-65432317 MS.gene05080:CDS 30.0%
! TAATATCACCGTTCTTTTTC+TGG - chr3.4:65429033-65429052 MS.gene05080:intron 30.0%
! TATTTCTGCAACTATGATCA+GGG + chr3.4:65431127-65431146 None:intergenic 30.0%
! TCTTAAAGAGTACAGTTCAA+CGG - chr3.4:65431427-65431446 MS.gene05080:intron 30.0%
! TTCTTTTACAGTGCAACTAA+AGG - chr3.4:65431506-65431525 MS.gene05080:intron 30.0%
!! GTATAAGCGCTTTTTATGAT+AGG - chr3.4:65429357-65429376 MS.gene05080:intron 30.0%
!! TAACCGTTTTGGATTTTACA+TGG + chr3.4:65431758-65431777 None:intergenic 30.0%
!! TATTGATAGACATGGATTAG+AGG + chr3.4:65430137-65430156 None:intergenic 30.0%
!! TATTGATTCACAACCTTTGA+CGG - chr3.4:65430326-65430345 MS.gene05080:CDS 30.0%
!!! GGTCAATTTTTTCTCTTGAA+TGG + chr3.4:65432125-65432144 None:intergenic 30.0%
!!! GTCAACTTTTTGTGTTGATT+CGG - chr3.4:65430223-65430242 MS.gene05080:intron 30.0%
AACGGTTAACCTCTTCAATA+TGG - chr3.4:65431770-65431789 MS.gene05080:intron 35.0%
AAGCTGAAAACAGCTTATGA+AGG - chr3.4:65429471-65429490 MS.gene05080:intron 35.0%
ACGAAAAAAGGACCGTAATT+AGG + chr3.4:65429092-65429111 None:intergenic 35.0%
ACTGCAGTGTAGTTCTTATT+TGG + chr3.4:65430064-65430083 None:intergenic 35.0%
AGAGCTTATAGTTAGGGTTA+GGG - chr3.4:65429630-65429649 MS.gene05080:intron 35.0%
ATGTAGTTTAGATCACCTTG+GGG - chr3.4:65431658-65431677 MS.gene05080:intron 35.0%
CACTCTTACCCAAAACTTTA+AGG + chr3.4:65429821-65429840 None:intergenic 35.0%
CCATATGCTGCAAAAGAAAA+AGG + chr3.4:65431343-65431362 None:intergenic 35.0%
CGAAAATTGAGGCAAACATT+GGG + chr3.4:65431971-65431990 None:intergenic 35.0%
CGAATTAAGACACTTCCTTT+AGG + chr3.4:65430468-65430487 None:intergenic 35.0%
GAAAATTGAGGCAAACATTG+GGG + chr3.4:65431970-65431989 None:intergenic 35.0%
GATCTAAACTACATCCCTTA+AGG + chr3.4:65431652-65431671 None:intergenic 35.0%
GATGTAGTTTAGATCACCTT+GGG - chr3.4:65431657-65431676 MS.gene05080:intron 35.0%
GATTTGACCTTGTAACCTTA+AGG - chr3.4:65431634-65431653 MS.gene05080:intron 35.0%
GTAGCAATTCTTTAAACGGA+AGG - chr3.4:65432099-65432118 MS.gene05080:CDS 35.0%
TACTGTAGCTGCAATATACA+TGG - chr3.4:65432411-65432430 MS.gene05080:CDS 35.0%
TAGAGCTTATAGTTAGGGTT+AGG - chr3.4:65429629-65429648 MS.gene05080:intron 35.0%
TTCACTAAAGCAAACACTAC+TGG - chr3.4:65430672-65430691 MS.gene05080:intron 35.0%
! AACCCATTGCCTTAAAGTTT+TGG - chr3.4:65429809-65429828 MS.gene05080:intron 35.0%
! AATTTTGGGCTGTGCTTAAA+GGG + chr3.4:65430495-65430514 None:intergenic 35.0%
! ACCCATTGCCTTAAAGTTTT+GGG - chr3.4:65429810-65429829 MS.gene05080:intron 35.0%
! ATATCACCGTTCTTTTTCTG+GGG - chr3.4:65429035-65429054 MS.gene05080:intron 35.0%
! ATTGAAGAGGTTAACCGTTT+TGG + chr3.4:65431769-65431788 None:intergenic 35.0%
! CAATGTTTGCCTCAATTTTC+GGG - chr3.4:65431970-65431989 MS.gene05080:CDS 35.0%
! CCAATGTTTGCCTCAATTTT+CGG - chr3.4:65431969-65431988 MS.gene05080:CDS 35.0%
! CCTTTTTCTTTTGCAGCATA+TGG - chr3.4:65431340-65431359 MS.gene05080:intron 35.0%
! CTTTTCGTTTAATTCCAGCT+GGG - chr3.4:65429117-65429136 MS.gene05080:intron 35.0%
! CTTTTGCAGCATATGGTTAT+TGG - chr3.4:65431347-65431366 MS.gene05080:intron 35.0%
! TAATTTTGGGCTGTGCTTAA+AGG + chr3.4:65430496-65430515 None:intergenic 35.0%
! TCTTTTCGTTTAATTCCAGC+TGG - chr3.4:65429116-65429135 MS.gene05080:intron 35.0%
! TGTTTTTCCTTCGTCTTCTT+CGG + chr3.4:65428952-65428971 None:intergenic 35.0%
! TTTTTCGTACCTTTTGTCAC+CGG - chr3.4:65432236-65432255 MS.gene05080:CDS 35.0%
!! ACATGGATTAGAGGAAAAGT+TGG + chr3.4:65430128-65430147 None:intergenic 35.0%
!! ACCCAAAACTTTAAGGCAAT+GGG + chr3.4:65429814-65429833 None:intergenic 35.0%
!! ACTTTAAGGCAATGGGTTTA+TGG + chr3.4:65429807-65429826 None:intergenic 35.0%
!! AGTTCTTATTTGGTGCACAT+TGG - chr3.4:65429956-65429975 MS.gene05080:intron 35.0%
!! AGTTCTTATTTGGTGCACAT+TGG + chr3.4:65429975-65429956 None:intergenic 35.0%
!! ATGGATTAGAGGAAAAGTTG+GGG + chr3.4:65430216-65430197 None:intergenic 35.0%
!! CATGGATTAGAGGAAAAGTT+GGG + chr3.4:65430127-65430146 None:intergenic 35.0%
!! CTTTAAGGCAATGGGTTTAT+GGG + chr3.4:65429806-65429825 None:intergenic 35.0%
!! GAATTTTCTAGAGGAAATGC+CGG + chr3.4:65432258-65432277 None:intergenic 35.0%
!! GTACTTGCTGCTTTGTTATT+TGG - chr3.4:65430354-65430373 MS.gene05080:CDS 35.0%
!! TACCCAAAACTTTAAGGCAA+TGG + chr3.4:65429815-65429834 None:intergenic 35.0%
!! TTGTTATTTGGTGAGTCCAT+TGG - chr3.4:65430366-65430385 MS.gene05080:CDS 35.0%
!!! TAAAGTTTTGGGTAAGAGTG+TGG - chr3.4:65429821-65429840 MS.gene05080:intron 35.0%
!!! TGTTGCTTGTTTTGACTATC+TGG - chr3.4:65430282-65430301 MS.gene05080:intron 35.0%
!!! TTGTTGCTGCTTTGTTTTGT+TGG - chr3.4:65429708-65429727 MS.gene05080:CDS 35.0%
AAGTGTGAATTTGGGTGTGT+TGG - chr3.4:65431078-65431097 MS.gene05080:intron 40.0%
ACTAGAAATGGAGGAAACGT+TGG - chr3.4:65429763-65429782 MS.gene05080:CDS 40.0%
AGTTGCTCCCATCAAATGAT+AGG + chr3.4:65430717-65430736 None:intergenic 40.0%
ATGGCTTAGAGGAAAAGTTG+GGG + chr3.4:65430031-65430050 None:intergenic 40.0%
CAAGTACTCTGATCCTATCA+TGG - chr3.4:65430822-65430841 MS.gene05080:intron 40.0%
CCGAAAATTGAGGCAAACAT+TGG + chr3.4:65431972-65431991 None:intergenic 40.0%
CGAAAAGACGCAACGAAAAA+AGG + chr3.4:65429104-65429123 None:intergenic 40.0%
CTACATCCCTTAAGGTTACA+AGG + chr3.4:65431644-65431663 None:intergenic 40.0%
GATGGCTTAGAGGAAAAGTT+GGG + chr3.4:65430032-65430051 None:intergenic 40.0%
GCTAACAGCACTTCCAAAAA+TGG + chr3.4:65431477-65431496 None:intergenic 40.0%
GGATGTAGTTTAGATCACCT+TGG - chr3.4:65431656-65431675 MS.gene05080:intron 40.0%
GTACAGTTCAACGGATGTAT+TGG - chr3.4:65431436-65431455 MS.gene05080:intron 40.0%
GTTGCTCCCATCAAATGATA+GGG + chr3.4:65430716-65430735 None:intergenic 40.0%
TAACAATGGGAAAGAGTTGC+CGG - chr3.4:65432003-65432022 MS.gene05080:CDS 40.0%
TACCTGCCCTATCATTTGAT+GGG - chr3.4:65430707-65430726 MS.gene05080:intron 40.0%
TATTGCAGCTACAGTAACAC+TGG + chr3.4:65432407-65432426 None:intergenic 40.0%
TCACAGAAAGGAAAAGAGAG+AGG + chr3.4:65431555-65431574 None:intergenic 40.0%
TGAAAGGTCTCTCGTTGTTT+AGG - chr3.4:65431283-65431302 MS.gene05080:intron 40.0%
TTACCTGCCCTATCATTTGA+TGG - chr3.4:65430706-65430725 MS.gene05080:intron 40.0%
TTCCAAAAATGGACGTGTAG+AGG + chr3.4:65431466-65431485 None:intergenic 40.0%
TTGCAGCATATGGTTATTGG+TGG - chr3.4:65431350-65431369 MS.gene05080:intron 40.0%
TTGTAACGCAAAAAGGCTTG+AGG + chr3.4:65431027-65431046 None:intergenic 40.0%
! AAGCTTACATTTAGGGTCAG+AGG - chr3.4:65429674-65429693 MS.gene05080:CDS 40.0%
! AAGGTGTCAGTTCAGTGTTA+AGG - chr3.4:65431612-65431631 MS.gene05080:intron 40.0%
! CATGATAGGATCAGAGTACT+TGG + chr3.4:65430824-65430843 None:intergenic 40.0%
! TTTTGTTGGAGCATGGAATG+CGG + chr3.4:65428848-65428867 None:intergenic 40.0%
!! ATCCAAGCATTGAAACCAGA+AGG + chr3.4:65429185-65429204 None:intergenic 40.0%
!! CTTATTTGGTGCACATTGGA+TGG - chr3.4:65429960-65429979 MS.gene05080:intron 40.0%
!! CTTATTTGGTGCACATTGGA+TGG + chr3.4:65429979-65429960 None:intergenic 40.0%
!! TACCTTCTGGTTTCAATGCT+TGG - chr3.4:65429180-65429199 MS.gene05080:CDS 40.0%
!! TTTGGAAGTGCTGTTAGCTA+TGG - chr3.4:65431479-65431498 MS.gene05080:intron 40.0%
!!! CTTGTTTTGACTATCTGGCA+TGG - chr3.4:65430287-65430306 MS.gene05080:intron 40.0%
!!! GTTGCTTTTGCTGCTTTTAG+AGG - chr3.4:65429149-65429168 MS.gene05080:intron 40.0%
AACAATGAGCCTGCTGTAAG+TGG - chr3.4:65431401-65431420 MS.gene05080:intron 45.0%
AACAATGGGAAAGAGTTGCC+GGG - chr3.4:65432004-65432023 MS.gene05080:CDS 45.0%
AAGAATCGCGAATGCCACAA+GGG + chr3.4:65431381-65431400 None:intergenic 45.0%
ACAATGAGCCTGCTGTAAGT+GGG - chr3.4:65431402-65431421 MS.gene05080:intron 45.0%
AGAGGAAAAGTTGGGGATTC+TGG + chr3.4:65430024-65430043 None:intergenic 45.0%
AGAGGAAGAGCTTTACCTTC+TGG - chr3.4:65429167-65429186 MS.gene05080:intron 45.0%
ATCCTATCATGGCAACTGGA+TGG - chr3.4:65430833-65430852 MS.gene05080:intron 45.0%
ATCGAAGAGACTGTGCTTAG+GGG - chr3.4:65428986-65429005 MS.gene05080:intron 45.0%
ATCTGGCATGGATATATCGC+AGG - chr3.4:65430299-65430318 MS.gene05080:intron 45.0%
CAAACATGTTGGGGATTCTG+GGG + chr3.4:65429891-65429910 None:intergenic 45.0%
CAACTATGATCAGGGACTCA+GGG + chr3.4:65431119-65431138 None:intergenic 45.0%
CATCGAAGAGACTGTGCTTA+GGG - chr3.4:65428985-65429004 MS.gene05080:intron 45.0%
CCAAACATGTTGGGGATTCT+GGG + chr3.4:65429892-65429911 None:intergenic 45.0%
CCAGAATCCCCAACATGTTT+GGG - chr3.4:65429890-65429909 MS.gene05080:intron 45.0%
CCTTGGGGACAGTTGTAAAA+TGG - chr3.4:65431673-65431692 MS.gene05080:intron 45.0%
CTCGTTGTTTAGGAACTCTC+TGG - chr3.4:65431293-65431312 MS.gene05080:intron 45.0%
GCAGTCTTACCCGAAAATTG+AGG + chr3.4:65431982-65432001 None:intergenic 45.0%
GCAGTTCCCCAGAAAAAGAA+CGG + chr3.4:65429044-65429063 None:intergenic 45.0%
GGATGGCTTAGAGGAAAAGT+TGG + chr3.4:65430033-65430052 None:intergenic 45.0%
GGCAACTCTTTCCCATTGTT+AGG + chr3.4:65432004-65432023 None:intergenic 45.0%
GGGTAAGACTGCCTAACAAT+GGG - chr3.4:65431990-65432009 MS.gene05080:CDS 45.0%
GTGGAAAAGCGAGAAGAAGA+GGG + chr3.4:65428804-65428823 None:intergenic 45.0%
TAAGAATCGCGAATGCCACA+AGG + chr3.4:65431382-65431401 None:intergenic 45.0%
TCATCGAAGAGACTGTGCTT+AGG - chr3.4:65428984-65429003 MS.gene05080:intron 45.0%
TCCTATCATGGCAACTGGAT+GGG - chr3.4:65430834-65430853 MS.gene05080:intron 45.0%
TCTGATCCTATCATGGCAAC+TGG - chr3.4:65430829-65430848 MS.gene05080:intron 45.0%
TGATTCACAACCTTTGACGG+TGG - chr3.4:65430329-65430348 MS.gene05080:CDS 45.0%
TGGAAAAGCGAGAAGAAGAG+GGG + chr3.4:65428803-65428822 None:intergenic 45.0%
TGTGAGAGGTGAAAGAGTAG+CGG + chr3.4:65428770-65428789 None:intergenic 45.0%
TTAAGACTCCCACTTACAGC+AGG + chr3.4:65431413-65431432 None:intergenic 45.0%
TTCAGGGGTTTCTTGCTGAA+GGG - chr3.4:65429243-65429262 MS.gene05080:intron 45.0%
TTCCTTCGTCTTCTTCGGTT+AGG + chr3.4:65428947-65428966 None:intergenic 45.0%
TTCTCACCTGTACAGCTTGT+TGG - chr3.4:65432379-65432398 MS.gene05080:CDS 45.0%
TTCTGGCAGTCTTTGCATTC+TGG + chr3.4:65430102-65430121 None:intergenic 45.0%
TTGGTAGATTGCGTAGGAAC+AGG - chr3.4:65428903-65428922 MS.gene05080:intron 45.0%
TTGTGCTTGTGATGCATTGC+AGG - chr3.4:65431909-65431928 MS.gene05080:CDS 45.0%
TTTCAGGGGTTTCTTGCTGA+AGG - chr3.4:65429242-65429261 MS.gene05080:intron 45.0%
! AAGAGGCATGGACATCTGAA+AGG - chr3.4:65431267-65431286 MS.gene05080:intron 45.0%
! CAGAAGACTTCAGCTGGTTT+GGG - chr3.4:65429269-65429288 MS.gene05080:intron 45.0%
! CCATTTTACAACTGTCCCCA+AGG + chr3.4:65431676-65431695 None:intergenic 45.0%
! CTCCTCTACACGTCCATTTT+TGG - chr3.4:65431461-65431480 MS.gene05080:intron 45.0%
! CTTACATTTAGGGTCAGAGG+TGG - chr3.4:65429677-65429696 MS.gene05080:CDS 45.0%
! GTGTGGTGTCTCTCTTTTAG+CGG - chr3.4:65429838-65429857 MS.gene05080:intron 45.0%
! TCTCACCTGTACAGCTTGTT+GGG - chr3.4:65432380-65432399 MS.gene05080:CDS 45.0%
! TGTCCCACATCGACTAGAAA+TGG - chr3.4:65429751-65429770 MS.gene05080:CDS 45.0%
! TGTGGTGTCTCTCTTTTAGC+GGG - chr3.4:65429839-65429858 MS.gene05080:intron 45.0%
! TTAGGAACTCTCTGGAAGCT+TGG - chr3.4:65431301-65431320 MS.gene05080:intron 45.0%
!! CCTCCATTTCTAGTCGATGT+GGG + chr3.4:65429757-65429776 None:intergenic 45.0%
!! CGTAGGACTTGTGTTACTTG+AGG - chr3.4:65430422-65430441 MS.gene05080:CDS 45.0%
!! CTTTTTCTGGGGAACTGCAA+TGG - chr3.4:65429046-65429065 MS.gene05080:intron 45.0%
!! GGGATTCATATTTGGTGCAC+CGG + chr3.4:65430011-65430030 None:intergenic 45.0%
!! GGTGGATTCTGTTGATTTGC+CGG + chr3.4:65428874-65428893 None:intergenic 45.0%
!! TCCTCCATTTCTAGTCGATG+TGG + chr3.4:65429758-65429777 None:intergenic 45.0%
!!! TGATTTGCCGGTGGTTTTGT+TGG + chr3.4:65428862-65428881 None:intergenic 45.0%
!!! TTTGATTTTTTTTTTTTTTT+TGG - chr3.4:65432028-65432047 MS.gene05080:CDS 5.0%
AACTTCTCACTGTGGGGAAG+TGG - chr3.4:65430733-65430752 MS.gene05080:CDS 50.0%
ACCCATCCAGTTGCCATGAT+AGG + chr3.4:65430838-65430857 None:intergenic 50.0%
ACTTCTCACTGTGGGGAAGT+GGG - chr3.4:65430734-65430753 MS.gene05080:CDS 50.0%
AGAATCGCGAATGCCACAAG+GGG + chr3.4:65431380-65431399 None:intergenic 50.0%
ATGCGGAAACGGAGAGAAGA+TGG + chr3.4:65428831-65428850 None:intergenic 50.0%
ATGGGAGCAACTTCTCACTG+TGG - chr3.4:65430725-65430744 MS.gene05080:CDS 50.0%
ATTGGAGTTGTTGGAGCTGC+CGG - chr3.4:65430384-65430403 MS.gene05080:CDS 50.0%
CAGTTGGCACTGTCATGGTT+CGG - chr3.4:65430791-65430810 MS.gene05080:CDS 50.0%
CCATGCTCCAACAAAACCAC+CGG - chr3.4:65428852-65428871 MS.gene05080:intron 50.0%
CCCAAACATGTTGGGGATTC+TGG + chr3.4:65429893-65429912 None:intergenic 50.0%
CCCAGAATCCCCAACATGTT+TGG - chr3.4:65429889-65429908 MS.gene05080:intron 50.0%
CGAGAAGAAGAGGGGAATTG+TGG + chr3.4:65428795-65428814 None:intergenic 50.0%
CGGGTAAGACTGCCTAACAA+TGG - chr3.4:65431989-65432008 MS.gene05080:CDS 50.0%
CTACGCAATCTACCAACTCG+AGG + chr3.4:65428899-65428918 None:intergenic 50.0%
CTCCCATCAAATGATAGGGC+AGG + chr3.4:65430712-65430731 None:intergenic 50.0%
CTCCTAACCGAAGAAGACGA+AGG - chr3.4:65428942-65428961 MS.gene05080:intron 50.0%
GAAACGGAGAGAAGATGGAG+TGG + chr3.4:65428826-65428845 None:intergenic 50.0%
GAGGAAATGCCGGTGACAAA+AGG + chr3.4:65432248-65432267 None:intergenic 50.0%
GCAACAAGAAGAAACCCAGC+TGG + chr3.4:65429134-65429153 None:intergenic 50.0%
GCAACTATGATCAGGGACTC+AGG + chr3.4:65431120-65431139 None:intergenic 50.0%
GCAATCTACCAACTCGAGGT+CGG + chr3.4:65428895-65428914 None:intergenic 50.0%
GCAGAAGACTTCAGCTGGTT+TGG - chr3.4:65429268-65429287 MS.gene05080:intron 50.0%
GGTGAGTCCATTGGAGTTGT+TGG - chr3.4:65430375-65430394 MS.gene05080:CDS 50.0%
GGTGGAAAAGCGAGAAGAAG+AGG + chr3.4:65428805-65428824 None:intergenic 50.0%
GTGCACATTGGATGGCTTAG+AGG + chr3.4:65429987-65429968 None:intergenic 50.0%
TGGAGCATGGAATGCGGAAA+CGG + chr3.4:65428842-65428861 None:intergenic 50.0%
TGGGAGCAACTTCTCACTGT+GGG - chr3.4:65430726-65430745 MS.gene05080:CDS 50.0%
! CCCACATCGACTAGAAATGG+AGG - chr3.4:65429754-65429773 MS.gene05080:CDS 50.0%
! GTCGATGCTGCTTGCTTTCA+GGG - chr3.4:65429227-65429246 MS.gene05080:intron 50.0%
! GTTAAGGTGACGGTGGTGAA+GGG + chr3.4:65428732-65428751 None:intergenic 50.0%
! TCGATGCTGCTTGCTTTCAG+GGG - chr3.4:65429228-65429247 MS.gene05080:intron 50.0%
! TTTCTGGGGAACTGCAATGG+TGG - chr3.4:65429049-65429068 MS.gene05080:intron 50.0%
!! CTCACCTGTACAGCTTGTTG+GGG - chr3.4:65432381-65432400 MS.gene05080:CDS 50.0%
!! CTCGAGTTGGTAGATTGCGT+AGG - chr3.4:65428897-65428916 MS.gene05080:intron 50.0%
!! GGATTCTGTTGATTTGCCGG+TGG + chr3.4:65428871-65428890 None:intergenic 50.0%
!! GGTGGTGTTGGTTAAGGTGA+CGG + chr3.4:65428742-65428761 None:intergenic 50.0%
!! GTGCTTAGGGGAAGCGTTAT+GGG - chr3.4:65428998-65429017 MS.gene05080:intron 50.0%
!! TGTGCTTAGGGGAAGCGTTA+TGG - chr3.4:65428997-65429016 MS.gene05080:intron 50.0%
!! TTAGGGGAAGCGTTATGGGA+AGG - chr3.4:65429002-65429021 MS.gene05080:intron 50.0%
AAGGGAGTTGAGCAGCACCA+CGG + chr3.4:65428714-65428733 None:intergenic 55.0%
ACGGAGAGAAGATGGAGTGG+TGG + chr3.4:65428823-65428842 None:intergenic 55.0%
AGAATCCACCGACCTCGAGT+TGG - chr3.4:65428884-65428903 MS.gene05080:intron 55.0%
AGAGGTGAAAGAGTAGCGGC+GGG + chr3.4:65428766-65428785 None:intergenic 55.0%
ATCTACCAACTCGAGGTCGG+TGG + chr3.4:65428892-65428911 None:intergenic 55.0%
CATGGCAGTTGGCACTGTCA+TGG - chr3.4:65430786-65430805 MS.gene05080:CDS 55.0%
CTTCTCACTGTGGGGAAGTG+GGG - chr3.4:65430735-65430754 MS.gene05080:CDS 55.0%
GAATCGCGAATGCCACAAGG+GGG + chr3.4:65431379-65431398 None:intergenic 55.0%
GAGAGGTGAAAGAGTAGCGG+CGG + chr3.4:65428767-65428786 None:intergenic 55.0%
GCAAGTACAGCCACCGTCAA+AGG + chr3.4:65430342-65430361 None:intergenic 55.0%
GCTTCTTGCAGCTCAGAGCA+TGG - chr3.4:65430768-65430787 MS.gene05080:CDS 55.0%
GGCAGCTCCAACAACTCCAA+TGG + chr3.4:65430385-65430404 None:intergenic 55.0%
GGGAGCAACTTCTCACTGTG+GGG - chr3.4:65430727-65430746 MS.gene05080:CDS 55.0%
GGGGAATTGTGGAGTGTGAG+AGG + chr3.4:65428784-65428803 None:intergenic 55.0%
GGGTTGCAGAAGACTTCAGC+TGG - chr3.4:65429263-65429282 MS.gene05080:intron 55.0%
TACGACGCCAAGTACAAGCC+CGG + chr3.4:65430406-65430425 None:intergenic 55.0%
TTGGAGTTGTTGGAGCTGCC+GGG - chr3.4:65430385-65430404 MS.gene05080:CDS 55.0%
! ATGTTGGGGATTCTGGGGAG+CGG + chr3.4:65429886-65429905 None:intergenic 55.0%
! CGTCGATGCTGCTTGCTTTC+AGG - chr3.4:65429226-65429245 MS.gene05080:intron 55.0%
! GGTTAAGGTGACGGTGGTGA+AGG + chr3.4:65428733-65428752 None:intergenic 55.0%
! TATTGGTGGTCTCCCCCTTG+TGG - chr3.4:65431364-65431383 MS.gene05080:intron 55.0%
! TTGGCACTGTCATGGTTCGG+TGG - chr3.4:65430794-65430813 MS.gene05080:CDS 55.0%
!! CGGCAATGGGCTAAACGTCT+AGG + chr3.4:65429866-65429885 None:intergenic 55.0%
!! GGTGTTGGTTAAGGTGACGG+TGG + chr3.4:65428739-65428758 None:intergenic 55.0%
!! TGGCACTGTCATGGTTCGGT+GGG - chr3.4:65430795-65430814 MS.gene05080:CDS 55.0%
!!! CCGGTGGTTTTGTTGGAGCA+TGG + chr3.4:65428855-65428874 None:intergenic 55.0%
CTGGCCCCAACAAGCTGTAC+AGG + chr3.4:65432388-65432407 None:intergenic 60.0%
GCAGCTCAGAGCATGGCAGT+TGG - chr3.4:65430775-65430794 MS.gene05080:CDS 60.0%
GGGCTTGTACTTGGCGTCGT+AGG - chr3.4:65430405-65430424 MS.gene05080:CDS 60.0%
! GGATTCTGGGGAGCGGCAAT+GGG + chr3.4:65429879-65429898 None:intergenic 60.0%
!! GCGGGTGGTGGTGTTGGTTA+AGG + chr3.4:65428748-65428767 None:intergenic 60.0%
CACTGTGGGGAAGTGGGGAG+TGG - chr3.4:65430740-65430759 MS.gene05080:CDS 65.0%
GAAAGAGTAGCGGCGGGTGG+TGG + chr3.4:65428760-65428779 None:intergenic 65.0%
GGAGCTGCCGGGCTTGTACT+TGG - chr3.4:65430396-65430415 MS.gene05080:CDS 65.0%
GGTGAAAGAGTAGCGGCGGG+TGG + chr3.4:65428763-65428782 None:intergenic 65.0%
TGTGGGGAAGTGGGGAGTGG+TGG - chr3.4:65430743-65430762 MS.gene05080:CDS 65.0%
! GGGATTCTGGGGAGCGGCAA+TGG + chr3.4:65429880-65429899 None:intergenic 65.0%
! GTAGCGGCGGGTGGTGGTGT+TGG + chr3.4:65428754-65428773 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 65428702 65432459 65428702 ID=MS.gene05080
chr3.4 mRNA 65428702 65432459 65428702 ID=MS.gene05080.t1;Parent=MS.gene05080
chr3.4 exon 65431866 65432459 65431866 ID=MS.gene05080.t1.exon1;Parent=MS.gene05080.t1
chr3.4 CDS 65431866 65432459 65431866 ID=cds.MS.gene05080.t1;Parent=MS.gene05080.t1
chr3.4 exon 65430718 65430840 65430718 ID=MS.gene05080.t1.exon2;Parent=MS.gene05080.t1
chr3.4 CDS 65430718 65430840 65430718 ID=cds.MS.gene05080.t1;Parent=MS.gene05080.t1
chr3.4 exon 65430306 65430455 65430306 ID=MS.gene05080.t1.exon3;Parent=MS.gene05080.t1
chr3.4 CDS 65430306 65430455 65430306 ID=cds.MS.gene05080.t1;Parent=MS.gene05080.t1
chr3.4 exon 65429634 65429805 65429634 ID=MS.gene05080.t1.exon4;Parent=MS.gene05080.t1
chr3.4 CDS 65429634 65429805 65429634 ID=cds.MS.gene05080.t1;Parent=MS.gene05080.t1
chr3.4 exon 65429170 65429230 65429170 ID=MS.gene05080.t1.exon5;Parent=MS.gene05080.t1
chr3.4 CDS 65429170 65429230 65429170 ID=cds.MS.gene05080.t1;Parent=MS.gene05080.t1
chr3.4 exon 65428702 65428804 65428702 ID=MS.gene05080.t1.exon6;Parent=MS.gene05080.t1
chr3.4 CDS 65428702 65428804 65428702 ID=cds.MS.gene05080.t1;Parent=MS.gene05080.t1
Gene Sequence

>MS.gene05080

ATGCTGTCGCCGTGGTGCTGCTCAACTCCCTTCACCACCGTCACCTTAACCAACACCACCACCCGCCGCTACTCTTTCACCTCTCACACTCCACAATTCCCCTCTTCTTCTCGCTTTTCCACCACTCCATCTTCTCTCCGTTTCCGCATTCCATGCTCCAACAAAACCACCGGCAAATCAACAGAATCCACCGACCTCGAGTTGGTAGATTGCGTAGGAACAGGACAAAATGTAGAGTGTCTCCTAACCGAAGAAGACGAAGGAAAAACAAAAGATGAATCATCATCGAAGAGACTGTGCTTAGGGGAAGCGTTATGGGAAGGTGCAGTGTTAATATCACCGTTCTTTTTCTGGGGAACTGCAATGGTGGCGATGAAAGAAGTGATTCCTAATTACGGTCCTTTTTTCGTTGCGTCTTTTCGTTTAATTCCAGCTGGGTTTCTTCTTGTTGCTTTTGCTGCTTTTAGAGGAAGAGCTTTACCTTCTGGTTTCAATGCTTGGATTTCTATCGCAATATTCGCACTCGTCGATGCTGCTTGCTTTCAGGGGTTTCTTGCTGAAGGGTTGCAGAAGACTTCAGCTGGTTTGGGCAGTGTATGTTTGCATTTCATTTCTTACTCAATTTTGTTGTTACTAACTTACTTTGCAGCTTATAGTATAAGCGCTTTTTATGATAGGCGAAGCTATTTCTATAACAAAAAGTTAAGTTGTTTTGTTTTGTAAGCTATAAGCTGTTTTCATAAACTAGCTTAGAGAACTTATGAAAAATAAGCTGAAAACAGCTTATGAAGGTATCGTAAGTTGAATAGATGTGTTACTAGTTGAAAACAGTTTACAAAAATTGACCTTTTGTAGAATAGATATGTTACTAGTAGTACTATTAATAAGGGTTAAAAAAAATTAATGCATATATTTAGTAATTTGAATTAGAGCTTATAGTTAGGGTTAGGGACACATTTTTCTTTTCAAATGAAGCTTACATTTAGGGTCAGAGGTGGCATTATTGTTGTTGCTGCTTTGTTTTGTTGGAAATCAAGTGTGAGTGATAATGTCCCACATCGACTAGAAATGGAGGAAACGTTGGATATATAAGAGAGGAGACCCATAAACCCATTGCCTTAAAGTTTTGGGTAAGAGTGTGGTGTCTCTCTTTTAGCGGGTCCTAGACGTTTAGCCCATTGCCGCTCCCCAGAATCCCCAACATGTTTGGGTTTTTATGTCTAGTTCATGTGTCTTTGCTAGAGACTGTAGTGTAGTTCTTATTTGGTGCACATTGGATGGCTTAGTCTTATGTTTTATGTTGTAACCGGTGCACCAAATATGAATCCCCAACTTTTCCTCTAAGCCATCCAATGTGCACCAAATAAGAACTACACTGCAGTCTCTAGCAAAGACTGCCAGAATGCAAAGACTGCCAGAATCCCCAACTTTTCCTCTAATCCATGTCTATCAATATGAATCTGTAAAATGTTGTTTGTGTTTCATATTGATAGATATGGATTAGAGGAAAAGTTGCTTTGAGTCAACTTTTTGTGTTGATTCGGATTCTAGATTGCAGTGAGAGAATTAATTGTTTTAATTGTTGCTTGTTTTGACTATCTGGCATGGATATATCGCAGGTTATTATTGATTCACAACCTTTGACGGTGGCTGTACTTGCTGCTTTGTTATTTGGTGAGTCCATTGGAGTTGTTGGAGCTGCCGGGCTTGTACTTGGCGTCGTAGGACTTGTGTTACTTGAGGTATTTTAATTTTGGTTTTAACCTAAAGGAAGTGTCTTAATTCGCATACCCTTTAAGCACAGCCCAAAATTAGAAATCAAAATCTTTTACATATATTGTGGATTGCGGAATGATATTTAGCTTATGTCTTGCTATAGTTAGTGCTGTCCACATCATACAATTACCTAGTTGATTTTGTAATTTTTAGCATACAATTTCTCTTGGACTAGACATTACCTTCTATGTTTATTCACTAAAGCAAACACTACTGGTTTTATTGCAGTTACCTGCCCTATCATTTGATGGGAGCAACTTCTCACTGTGGGGAAGTGGGGAGTGGTGGATGCTTCTTGCAGCTCAGAGCATGGCAGTTGGCACTGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTATCATGGCAACTGGATGGGTACGCTTCAAATCTCATTCTGACTCTAGTTTTTGATAATTTTATGCTATGAAACGGAACTTAATGATTAGTATTCCTTTTTCAATTAAAAAATCAAGATGCATTTCTTCAAATGTACAAAATTATAGCTATTTTTCATTATATTTATTTTTGCGGTGTTTTGAGTGTCCTCAAGCCTTTTTGCGTTACAATTTAAAACGATACGATAAGTCCAGTTTACAAAAGTGTGAATTTGGGTGTGTTGGACTCTAATATATAGACCCTGAGTCCCTGATCATAGTTGCAGAAATATTTATTTCAGCATATGTTTCAACAATAAGTTTGTATACTGAAATAGTGAAATGATGATTATATAGGTATTACGTTCATATATTAGTATTTATGCAAAAAAAATCAATTTGTTAAAAAAAAAAGAGGCATGGACATCTGAAAGGTCTCTCGTTGTTTAGGAACTCTCTGGAAGCTTGGTTCAAAACTTTACTATCCTTTTTCTTTTGCAGCATATGGTTATTGGTGGTCTCCCCCTTGTGGCATTCGCGATTCTTAACAATGAGCCTGCTGTAAGTGGGAGTCTTAAAGAGTACAGTTCAACGGATGTATTGGCACTCCTCTACACGTCCATTTTTGGAAGTGCTGTTAGCTATGGTGTGTTCTTTTACAGTGCAACTAAAGGTATGTATATCTTTCTGATCATGACCTCTCTCTTTTCCTTTCTGTGAATTTTCATTTATAGTCTTTAAATATATGAATTTCAACAAGGTGTCAGTTCAGTGTTAAGGATTTGACCTTGTAACCTTAAGGGATGTAGTTTAGATCACCTTGGGGACAGTTGTAAAATGGTTATTAGTGCCACTTTCTTTAAAAAAAAAAAATTCCCCTCTCATTTTTTAAGAAAACATCCATGTAAAATCCAAAACGGTTAACCTCTTCAATATGGTAATTAGTATTATTGATTTATCTTTAGCCATTTTGTACACTTACATATTTGAACTTTATTTTTGTTTTTCAAAATTCTTATCGACCCATAAAGAATACACCATATTATTATTGACATTGTGCTTGTGATGCATTGCAGGTAGCTTGACAAAGCTCAGTTCACTTACATTTCTAACCCCAATGTTTGCCTCAATTTTCGGGTAAGACTGCCTAACAATGGGAAAGAGTTGCCGGGTTTTGATTTTTTTTTTTTTTTTGGAATTATGTAGCAGAGAGAATAAAAATCAGAAAGACAACTAATGGCTATGTAGCAATTCTTTAAACGGAAGGCCATTCAAGAGAAAAAATTGACCATCTTTTACAATTATATATTTTTTTTAACAGAATAACACCCACTTACATCCTTCATAATTTATTGAAGTATCGTGCTCACAAGATCATAACTTTTTCGTACCTTTTGTCACCGGCATTTCCTCTAGAAAATTCAAATATTTTCTGTCAAATTACATGTTTGTGTATCTTTTTGAGGACCTTTGTATACACATTTTTTCGTTTGGTATTTCAGGTTTTTGTATCTCGGTGAGACATTCTCACCTGTACAGCTTGTTGGGGCCAGTGTTACTGTAGCTGCAATATACATGGTTAACTTCAGAAACACTTCAGAATGA

Protein sequence

>MS.gene05080.t1

MLSPWCCSTPFTTVTLTNTTTRRYSFTSHTPQFPSSSRFSTTPSSLRFRIPCSNKTTGKSTESTDLELVDCVGTGQNVECLLTEEDEGKTKDESSSKRLCLGEALWEGAVLISPFFFWGTAMVAMKEVIPNYGPFFVASFRLIPAGFLLVAFAAFRGRALPSGFNAWISIAIFALVDAACFQGFLAEGLQKTSAGLGSVIIDSQPLTVAVLAALLFGESIGVVGAAGLVLGVVGLVLLELPALSFDGSNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWHMVIGGLPLVAFAILNNEPAVSGSLKEYSSTDVLALLYTSIFGSAVSYGVFFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQLVGASVTVAAIYMVNFRNTSE