AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29934

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29934.t1 MTR_8g464260 98.905 274 3 0 1 274 105 378 0.0 564
MS.gene29934.t1 MTR_2g012510 72.527 273 75 0 2 274 194 466 1.74e-147 421
MS.gene29934.t1 MTR_4g090525 61.455 275 105 1 1 274 176 450 1.19e-116 342
MS.gene29934.t1 MTR_4g094672 44.292 219 97 5 11 229 53 246 3.15e-55 179
MS.gene29934.t1 MTR_2g011680 30.035 283 148 12 10 265 146 405 1.28e-21 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29934.t1 AT5G54390 72.202 277 61 3 2 274 109 373 1.23e-139 398
MS.gene29934.t1 AT5G63980 46.245 253 110 5 10 262 107 333 5.02e-71 223
MS.gene29934.t1 AT5G09290 42.264 265 119 6 10 274 107 337 1.20e-62 201
MS.gene29934.t1 AT5G63990 40.824 267 129 7 2 268 103 340 9.84e-60 194
MS.gene29934.t1 AT5G64000 42.424 264 126 7 11 274 65 302 2.15e-56 183
MS.gene29934.t1 AT5G64000 42.424 264 126 7 11 274 108 345 3.66e-56 184
MS.gene29934.t1 AT5G63990 38.073 218 108 5 2 219 103 293 6.06e-45 154
MS.gene29934.t1 AT4G05090 28.986 276 158 9 8 268 109 361 2.45e-21 92.4
MS.gene29934.t1 AT4G05090 28.986 276 158 9 8 268 141 393 4.13e-21 92.0

Find 91 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGACTTCACTGGGTAAT+TGG 0.114406 8.2:-46147475 None:intergenic
TTCAAAGGGAACGTACTTAG+AGG 0.300891 8.2:+46148619 MS.gene29934:CDS
AAAGTTGTTCTTGGAGTTCT+TGG 0.314451 8.2:+46147447 MS.gene29934:CDS
GAGGATGGAAAAGTTGTTCT+TGG 0.316763 8.2:+46147438 MS.gene29934:CDS
CGAATAGGCCTAGCACAATT+TGG 0.328303 8.2:-46147654 None:intergenic
AATCCCAATGTGCCGTCAAC+AGG 0.339938 8.2:-46147375 None:intergenic
TTGATGCTGTTTATGCTAGC+TGG 0.345159 8.2:+46148696 MS.gene29934:CDS
GACCCTGTTGACGGCACATT+GGG 0.370234 8.2:+46147372 MS.gene29934:CDS
TTCATGAAATTTGCAAAGTC+AGG 0.372813 8.2:+46148500 MS.gene29934:CDS
ATTGGCCGCTGCAGCTCAAC+GGG 0.373644 8.2:+46147321 MS.gene29934:CDS
TTTGAGTTTGCCCTTTCTAC+TGG 0.375537 8.2:-46147720 None:intergenic
CAGGTTACAAAGAAAAGATA+TGG 0.389849 8.2:+46148519 MS.gene29934:CDS
TCTGACTTCACTGGGTAATT+GGG 0.398839 8.2:-46147474 None:intergenic
ATATCGTTGTTTGATGATAC+TGG 0.400328 8.2:-46147515 None:intergenic
ACTCTTGATGCATGCGGAAA+AGG 0.410703 8.2:+46147552 MS.gene29934:CDS
TGCAAATTTCATGAATATCT+CGG 0.414493 8.2:-46148492 None:intergenic
AGTTTCTTCTGTTGATGATC+CGG 0.429160 8.2:+46147677 MS.gene29934:CDS
CAAGAGTTATGTCTGGACTT+TGG 0.431295 8.2:-46147275 None:intergenic
ACGGCACATTGGGATTTGTA+CGG 0.436123 8.2:+46147382 MS.gene29934:CDS
CATTCTAACGTCCTATCTTC+AGG 0.439215 8.2:-46147630 None:intergenic
TTTAGCCATTCTGACTTCAC+TGG 0.439440 8.2:-46147483 None:intergenic
GCCCTTACGTGTCCACAGTA+TGG 0.443252 8.2:+46148439 MS.gene29934:CDS
TTCTGTTGATGATCCGGCAT+TGG 0.445837 8.2:+46147683 MS.gene29934:CDS
AAGTTGTTCTTGGAGTTCTT+GGG 0.448569 8.2:+46147448 MS.gene29934:CDS
CGTTGAGCTGCAGCGGCCAA+TGG 0.448822 8.2:-46147319 None:intergenic
AGGTGCTAGTGGAAGGCATT+GGG 0.449905 8.2:+46147344 MS.gene29934:CDS
GATGTTCCAAGAGTTATGTC+TGG 0.451980 8.2:-46147282 None:intergenic
CGGCACATTGGGATTTGTAC+GGG 0.465953 8.2:+46147383 MS.gene29934:CDS
TGGGACTCCTCAAATTTATG+AGG 0.466477 8.2:+46148716 MS.gene29934:CDS
CAAAGTCCAGACATAACTCT+TGG 0.467323 8.2:+46147276 MS.gene29934:CDS
CATTGGCCGCTGCAGCTCAA+CGG 0.472445 8.2:+46147320 MS.gene29934:CDS
TGGGTACTTGACCCTGTTGA+CGG 0.474366 8.2:+46147363 MS.gene29934:CDS
GGTGGTGTGGTAACCGATGC+CGG 0.477095 8.2:+46148578 MS.gene29934:CDS
CTCTATGCGAACCAGTAGAA+AGG 0.478562 8.2:+46147709 MS.gene29934:CDS
AGTCGTTGATTCCTGAAGAT+AGG 0.478934 8.2:+46147619 MS.gene29934:CDS
TAGAGGTCGGCCTCCGGCAT+CGG 0.486133 8.2:-46148591 None:intergenic
TCAACAGAAGAAACTCGAAT+AGG 0.492310 8.2:-46147669 None:intergenic
TGATGCTGTTTATGCTAGCT+GGG 0.492410 8.2:+46148697 MS.gene29934:CDS
TCAGAAGTTCTCGCGGCCAT+TGG 0.498717 8.2:+46147303 MS.gene29934:CDS
TACCATACTGTGGACACGTA+AGG 0.499750 8.2:-46148441 None:intergenic
GTGAGCAAGGCCAGCTGTGA+AGG 0.502989 8.2:-46147748 None:intergenic
GAGGTGCTAGTGGAAGGCAT+TGG 0.506229 8.2:+46147343 MS.gene29934:CDS
GCTCTAGCTTTGATTGAGGA+TGG 0.519160 8.2:+46147423 MS.gene29934:CDS
CAAGGCCAGCTGTGAAGGAA+TGG 0.524890 8.2:-46147743 None:intergenic
TCAAACCATTCCTTCACAGC+TGG 0.535193 8.2:+46147738 MS.gene29934:CDS
GGCCGCTGCAGCTCAACGGG+AGG 0.542625 8.2:+46147324 MS.gene29934:CDS
AAAGTCTAGAGGTCGGCCTC+CGG 0.545768 8.2:-46148597 None:intergenic
CGAGGCATAATTGCATGCTC+TGG 0.546827 8.2:+46148650 MS.gene29934:CDS
TCAAAGGGAACGTACTTAGA+GGG 0.547056 8.2:+46148620 MS.gene29934:CDS
TGACCCTGTTGACGGCACAT+TGG 0.552603 8.2:+46147371 MS.gene29934:CDS
TCGCATAGAGTTGCCAATGC+CGG 0.553182 8.2:-46147696 None:intergenic
TCTATGCGAACCAGTAGAAA+GGG 0.553675 8.2:+46147710 MS.gene29934:CDS
CACCTCCCGTTGAGCTGCAG+CGG 0.555384 8.2:-46147326 None:intergenic
TTGCTCACAGTGTAGGACTA+AGG 0.556338 8.2:+46147763 MS.gene29934:CDS
CGGTGTTGTGATTGTTGAAG+AGG 0.559759 8.2:+46148553 MS.gene29934:CDS
AGCTCAACGGGAGGTGCTAG+TGG 0.561690 8.2:+46147333 MS.gene29934:CDS
CAACGGGAGGTGCTAGTGGA+AGG 0.562576 8.2:+46147337 MS.gene29934:CDS
TTAGCCATTCTGACTTCACT+GGG 0.565040 8.2:-46147482 None:intergenic
CTGAAGATAGGACGTTAGAA+TGG 0.566383 8.2:+46147631 MS.gene29934:CDS
AGGTTACAAAGAAAAGATAT+GGG 0.567323 8.2:+46148520 MS.gene29934:CDS
TAAAGTATGCAGCAATAGCA+AGG 0.571197 8.2:+46148462 MS.gene29934:CDS
TAGAATGGCCAAATTGTGCT+AGG 0.579511 8.2:+46147646 MS.gene29934:CDS
ATTACCCAGTGAAGTCAGAA+TGG 0.582785 8.2:+46147478 MS.gene29934:CDS
TGGACTTTGGAGACCATACA+TGG 0.586518 8.2:-46147262 None:intergenic
AAGATATGGGATCATGCTGC+CGG 0.592595 8.2:+46148533 MS.gene29934:CDS
AAAGTATGCAGCAATAGCAA+GGG 0.593183 8.2:+46148463 MS.gene29934:CDS
GCTGGCCTTGCTCACAGTGT+AGG 0.593474 8.2:+46147756 MS.gene29934:CDS
GGTTGCTCTAGCTTTGATTG+AGG 0.597081 8.2:+46147419 MS.gene29934:CDS
ACCATACTGTGGACACGTAA+GGG 0.598695 8.2:-46148440 None:intergenic
CTGCATACTTTACCATACTG+TGG 0.600089 8.2:-46148451 None:intergenic
TTAGTCCTACACTGTGAGCA+AGG 0.600437 8.2:-46147761 None:intergenic
GTTGTGATTGTTGAAGAGGC+CGG 0.603344 8.2:+46148557 MS.gene29934:CDS
CAGAGCATGCAATTATGCCT+CGG 0.606208 8.2:-46148649 None:intergenic
TGTACGGGGCGATCAGTATG+CGG 0.612887 8.2:+46147398 MS.gene29934:CDS
CTCTTCAACAATCACAACAC+CGG 0.618190 8.2:-46148552 None:intergenic
TTGTATGCAAAGAGAGGCAG+TGG 0.622560 8.2:+46147582 MS.gene29934:CDS
GGCACATTGGGATTTGTACG+GGG 0.624183 8.2:+46147384 MS.gene29934:CDS
ATCCCAATGTGCCGTCAACA+GGG 0.626643 8.2:-46147374 None:intergenic
AGAGAGGCAGTGGTGAGGCG+TGG 0.628860 8.2:+46147592 MS.gene29934:CDS
TGTTGAAGAGGCCGGTGGTG+TGG 0.638056 8.2:+46148565 MS.gene29934:CDS
CCTTTGAAAAGTCTAGAGGT+CGG 0.639579 8.2:-46148604 None:intergenic
GGCATCGGTTACCACACCAC+CGG 0.647173 8.2:-46148576 None:intergenic
GTTCCCTTTGAAAAGTCTAG+AGG 0.652497 8.2:-46148608 None:intergenic
TGCAAAGAGAGGCAGTGGTG+AGG 0.660835 8.2:+46147587 MS.gene29934:CDS
TCAACAACTCTTGATGCATG+CGG 0.662013 8.2:+46147546 MS.gene29934:CDS
TGGAACATCAGAAGTTCTCG+CGG 0.662297 8.2:+46147296 MS.gene29934:CDS
TACTTAGAGGGTCTTGACCG+AGG 0.675960 8.2:+46148632 MS.gene29934:CDS
AAGTATGCAGCAATAGCAAG+GGG 0.677278 8.2:+46148464 MS.gene29934:CDS
GTGATTGTTGAAGAGGCCGG+TGG 0.685575 8.2:+46148560 MS.gene29934:CDS
GGTGTGGTAACCGATGCCGG+AGG 0.697260 8.2:+46148581 MS.gene29934:CDS
TGTGTGTTGTATGCAAAGAG+AGG 0.730469 8.2:+46147576 MS.gene29934:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATATAATATAATTCC+AGG + chr8.2:46148116-46148135 MS.gene29934:intron 10.0%
!! CTAAAAAAAAAAAAAAAAAC+TGG + chr8.2:46148178-46148197 MS.gene29934:intron 10.0%
!!! CAGTTTTTTTTTTTTTTTTT+AGG - chr8.2:46148180-46148199 None:intergenic 10.0%
!!! AATAAACTTAGATTATGTTT+TGG - chr8.2:46148326-46148345 None:intergenic 15.0%
!!! TATGTATAATTTTAGTTGTA+CGG - chr8.2:46148097-46148116 None:intergenic 15.0%
!! TTAATTATTGTACTTTCGAT+AGG + chr8.2:46148142-46148161 MS.gene29934:intron 20.0%
! AAGTACAATAATTAAATGCC+TGG - chr8.2:46148137-46148156 None:intergenic 25.0%
! AATTTCAGAGAATACAGATT+AGG - chr8.2:46148285-46148304 None:intergenic 25.0%
! AGGTTACAAAGAAAAGATAT+GGG + chr8.2:46148520-46148539 MS.gene29934:CDS 25.0%
! TGCAAATTTCATGAATATCT+CGG - chr8.2:46148495-46148514 None:intergenic 25.0%
! TTTGGAAGATATTGTAAACA+AGG - chr8.2:46148308-46148327 None:intergenic 25.0%
AGCTTATGCATATCAATAAG+TGG - chr8.2:46147947-46147966 None:intergenic 30.0%
CAGGTTACAAAGAAAAGATA+TGG + chr8.2:46148519-46148538 MS.gene29934:CDS 30.0%
TACTTTCGATAGGAACAATA+TGG + chr8.2:46148152-46148171 MS.gene29934:intron 30.0%
TTCATGAAATTTGCAAAGTC+AGG + chr8.2:46148500-46148519 MS.gene29934:CDS 30.0%
! AATTCCAACAATGGTGTTAA+AGG - chr8.2:46148381-46148400 None:intergenic 30.0%
! ATATCGTTGTTTGATGATAC+TGG - chr8.2:46147518-46147537 None:intergenic 30.0%
!! AGTGTCTTGTTTGAAGATTA+AGG + chr8.2:46147904-46147923 MS.gene29934:intron 30.0%
AAAGATAGGAATCATAGACC+AGG + chr8.2:46148237-46148256 MS.gene29934:intron 35.0%
AAAGTATGCAGCAATAGCAA+GGG + chr8.2:46148463-46148482 MS.gene29934:CDS 35.0%
AAAGTTGTTCTTGGAGTTCT+TGG + chr8.2:46147447-46147466 MS.gene29934:CDS 35.0%
AAGTTGTTCTTGGAGTTCTT+GGG + chr8.2:46147448-46147467 MS.gene29934:CDS 35.0%
CATAGGAAGCTATGAAAGAT+AGG + chr8.2:46148223-46148242 MS.gene29934:intron 35.0%
CTTTCATATCTACTGGACAT+AGG + chr8.2:46148206-46148225 MS.gene29934:intron 35.0%
GAGCATTTCAATTCCAACAA+TGG - chr8.2:46148390-46148409 None:intergenic 35.0%
GATTAGGAACTCAAAACAGA+AGG - chr8.2:46148269-46148288 None:intergenic 35.0%
TAAAGTATGCAGCAATAGCA+AGG + chr8.2:46148462-46148481 MS.gene29934:CDS 35.0%
TACAGTTGCAGAACAATTGA+CGG - chr8.2:46147812-46147831 None:intergenic 35.0%
TCAACAGAAGAAACTCGAAT+AGG - chr8.2:46147672-46147691 None:intergenic 35.0%
TCTTCCTTTAACACCATTGT+TGG + chr8.2:46148374-46148393 MS.gene29934:intron 35.0%
!! AGTTTCTTCTGTTGATGATC+CGG + chr8.2:46147677-46147696 MS.gene29934:CDS 35.0%
AAGACCCGAGGTAACAAATA+GGG + chr8.2:46148070-46148089 MS.gene29934:intron 40.0%
AAGTATGCAGCAATAGCAAG+GGG + chr8.2:46148464-46148483 MS.gene29934:CDS 40.0%
ACAGTTGCAGAACAATTGAC+GGG - chr8.2:46147811-46147830 None:intergenic 40.0%
AGGAACTCAAAACAGAAGGA+AGG - chr8.2:46148265-46148284 None:intergenic 40.0%
ATTACCCAGTGAAGTCAGAA+TGG + chr8.2:46147478-46147497 MS.gene29934:CDS 40.0%
CAAAGTCCAGACATAACTCT+TGG + chr8.2:46147276-46147295 MS.gene29934:CDS 40.0%
CAAGAGTTATGTCTGGACTT+TGG - chr8.2:46147278-46147297 None:intergenic 40.0%
CATTCTAACGTCCTATCTTC+AGG - chr8.2:46147633-46147652 None:intergenic 40.0%
CTCTTCAACAATCACAACAC+CGG - chr8.2:46148555-46148574 None:intergenic 40.0%
CTGAAGATAGGACGTTAGAA+TGG + chr8.2:46147631-46147650 MS.gene29934:CDS 40.0%
CTGCATACTTTACCATACTG+TGG - chr8.2:46148454-46148473 None:intergenic 40.0%
GAGGATGGAAAAGTTGTTCT+TGG + chr8.2:46147438-46147457 MS.gene29934:CDS 40.0%
GATGTTCCAAGAGTTATGTC+TGG - chr8.2:46147285-46147304 None:intergenic 40.0%
TAGAATGGCCAAATTGTGCT+AGG + chr8.2:46147646-46147665 MS.gene29934:CDS 40.0%
TCAAAGGGAACGTACTTAGA+GGG + chr8.2:46148620-46148639 MS.gene29934:CDS 40.0%
TCAACAACTCTTGATGCATG+CGG + chr8.2:46147546-46147565 MS.gene29934:CDS 40.0%
TCTATGCGAACCAGTAGAAA+GGG + chr8.2:46147710-46147729 MS.gene29934:CDS 40.0%
TCTGACTTCACTGGGTAATT+GGG - chr8.2:46147477-46147496 None:intergenic 40.0%
TGCTCTACACTCTCAAAATC+TGG + chr8.2:46148405-46148424 MS.gene29934:intron 40.0%
TGTGTGTTGTATGCAAAGAG+AGG + chr8.2:46147576-46147595 MS.gene29934:CDS 40.0%
TTAGCCATTCTGACTTCACT+GGG - chr8.2:46147485-46147504 None:intergenic 40.0%
TTCAAAGGGAACGTACTTAG+AGG + chr8.2:46148619-46148638 MS.gene29934:CDS 40.0%
TTCTGACTTCACTGGGTAAT+TGG - chr8.2:46147478-46147497 None:intergenic 40.0%
TTTAGCCATTCTGACTTCAC+TGG - chr8.2:46147486-46147505 None:intergenic 40.0%
! CCTTTGAAAAGTCTAGAGGT+CGG - chr8.2:46148607-46148626 None:intergenic 40.0%
! CGACCTCTAGACTTTTCAAA+GGG + chr8.2:46148605-46148624 MS.gene29934:CDS 40.0%
! GTTCCCTTTGAAAAGTCTAG+AGG - chr8.2:46148611-46148630 None:intergenic 40.0%
! TGATGCTGTTTATGCTAGCT+GGG + chr8.2:46148697-46148716 MS.gene29934:CDS 40.0%
! TTGATGCTGTTTATGCTAGC+TGG + chr8.2:46148696-46148715 MS.gene29934:CDS 40.0%
! TTTGAGTTTGCCCTTTCTAC+TGG - chr8.2:46147723-46147742 None:intergenic 40.0%
!! AGTCGTTGATTCCTGAAGAT+AGG + chr8.2:46147619-46147638 MS.gene29934:CDS 40.0%
AAGATATGGGATCATGCTGC+CGG + chr8.2:46148533-46148552 MS.gene29934:CDS 45.0%
ACCATACTGTGGACACGTAA+GGG - chr8.2:46148443-46148462 None:intergenic 45.0%
ACGGCACATTGGGATTTGTA+CGG + chr8.2:46147382-46147401 MS.gene29934:CDS 45.0%
ACTCTTGATGCATGCGGAAA+AGG + chr8.2:46147552-46147571 MS.gene29934:CDS 45.0%
CAAGACCCGAGGTAACAAAT+AGG + chr8.2:46148069-46148088 MS.gene29934:intron 45.0%
CAGAGCATGCAATTATGCCT+CGG - chr8.2:46148652-46148671 None:intergenic 45.0%
CGAATAGGCCTAGCACAATT+TGG - chr8.2:46147657-46147676 None:intergenic 45.0%
CTCTATGCGAACCAGTAGAA+AGG + chr8.2:46147709-46147728 MS.gene29934:CDS 45.0%
GGGACGACTTTCATATCTAC+TGG + chr8.2:46148199-46148218 MS.gene29934:intron 45.0%
GTTGTGATTGTTGAAGAGGC+CGG + chr8.2:46148557-46148576 MS.gene29934:CDS 45.0%
TACCATACTGTGGACACGTA+AGG - chr8.2:46148444-46148463 None:intergenic 45.0%
TCAAACCATTCCTTCACAGC+TGG + chr8.2:46147738-46147757 MS.gene29934:CDS 45.0%
TGGAACATCAGAAGTTCTCG+CGG + chr8.2:46147296-46147315 MS.gene29934:CDS 45.0%
TTAGTCCTACACTGTGAGCA+AGG - chr8.2:46147764-46147783 None:intergenic 45.0%
TTGCTCACAGTGTAGGACTA+AGG + chr8.2:46147763-46147782 MS.gene29934:CDS 45.0%
TTGTATGCAAAGAGAGGCAG+TGG + chr8.2:46147582-46147601 MS.gene29934:CDS 45.0%
! ACGGACCCTATTTGTTACCT+CGG - chr8.2:46148078-46148097 None:intergenic 45.0%
! CCGACCTCTAGACTTTTCAA+AGG + chr8.2:46148604-46148623 MS.gene29934:CDS 45.0%
!! CGGTGTTGTGATTGTTGAAG+AGG + chr8.2:46148553-46148572 MS.gene29934:CDS 45.0%
!! GCTCTAGCTTTGATTGAGGA+TGG + chr8.2:46147423-46147442 MS.gene29934:CDS 45.0%
!! GGTTGCTCTAGCTTTGATTG+AGG + chr8.2:46147419-46147438 MS.gene29934:CDS 45.0%
!! TTCTGTTGATGATCCGGCAT+TGG + chr8.2:46147683-46147702 MS.gene29934:CDS 45.0%
!!! ACCTCGGGTCTTGTTTTGAT+AGG - chr8.2:46148062-46148081 None:intergenic 45.0%
!! TAAAAAAAAAAAAAAAAACT+GGG + chr8.2:46148179-46148198 MS.gene29934:intron 5.0%
!!! AGTTTTTTTTTTTTTTTTTA+GGG - chr8.2:46148179-46148198 None:intergenic 5.0%
AATCCCAATGTGCCGTCAAC+AGG - chr8.2:46147378-46147397 None:intergenic 50.0%
ATCCCAATGTGCCGTCAACA+GGG - chr8.2:46147377-46147396 None:intergenic 50.0%
CGAGGCATAATTGCATGCTC+TGG + chr8.2:46148650-46148669 MS.gene29934:CDS 50.0%
CGGCACATTGGGATTTGTAC+GGG + chr8.2:46147383-46147402 MS.gene29934:CDS 50.0%
GCCTATCAAAACAAGACCCG+AGG + chr8.2:46148058-46148077 MS.gene29934:intron 50.0%
GGCACATTGGGATTTGTACG+GGG + chr8.2:46147384-46147403 MS.gene29934:CDS 50.0%
TACTTAGAGGGTCTTGACCG+AGG + chr8.2:46148632-46148651 MS.gene29934:CDS 50.0%
TCGCATAGAGTTGCCAATGC+CGG - chr8.2:46147699-46147718 None:intergenic 50.0%
TGGGTACTTGACCCTGTTGA+CGG + chr8.2:46147363-46147382 MS.gene29934:CDS 50.0%
! CGGACCCTATTTGTTACCTC+GGG - chr8.2:46148077-46148096 None:intergenic 50.0%
!! AGGTGCTAGTGGAAGGCATT+GGG + chr8.2:46147344-46147363 MS.gene29934:CDS 50.0%
!! CAAAACAGAAGGAAGGTGCC+TGG - chr8.2:46148258-46148277 None:intergenic 50.0%
AAAGTCTAGAGGTCGGCCTC+CGG - chr8.2:46148600-46148619 None:intergenic 55.0%
CAAGGCCAGCTGTGAAGGAA+TGG - chr8.2:46147746-46147765 None:intergenic 55.0%
GACCCTGTTGACGGCACATT+GGG + chr8.2:46147372-46147391 MS.gene29934:CDS 55.0%
GCCCTTACGTGTCCACAGTA+TGG + chr8.2:46148439-46148458 MS.gene29934:CDS 55.0%
GTGATTGTTGAAGAGGCCGG+TGG + chr8.2:46148560-46148579 MS.gene29934:CDS 55.0%
TCAGAAGTTCTCGCGGCCAT+TGG + chr8.2:46147303-46147322 MS.gene29934:CDS 55.0%
TGACCCTGTTGACGGCACAT+TGG + chr8.2:46147371-46147390 MS.gene29934:CDS 55.0%
TGCAAAGAGAGGCAGTGGTG+AGG + chr8.2:46147587-46147606 MS.gene29934:CDS 55.0%
TGTACGGGGCGATCAGTATG+CGG + chr8.2:46147398-46147417 MS.gene29934:CDS 55.0%
! GAGGTGCTAGTGGAAGGCAT+TGG + chr8.2:46147343-46147362 MS.gene29934:CDS 55.0%
ATTGGCCGCTGCAGCTCAAC+GGG + chr8.2:46147321-46147340 MS.gene29934:CDS 60.0%
CATTGGCCGCTGCAGCTCAA+CGG + chr8.2:46147320-46147339 MS.gene29934:CDS 60.0%
GGTGGTGTGGTAACCGATGC+CGG + chr8.2:46148578-46148597 MS.gene29934:CDS 60.0%
GTGAGCAAGGCCAGCTGTGA+AGG - chr8.2:46147751-46147770 None:intergenic 60.0%
TGTTGAAGAGGCCGGTGGTG+TGG + chr8.2:46148565-46148584 MS.gene29934:CDS 60.0%
!! AGCTCAACGGGAGGTGCTAG+TGG + chr8.2:46147333-46147352 MS.gene29934:CDS 60.0%
!! CAACGGGAGGTGCTAGTGGA+AGG + chr8.2:46147337-46147356 MS.gene29934:CDS 60.0%
!! GCTGGCCTTGCTCACAGTGT+AGG + chr8.2:46147756-46147775 MS.gene29934:CDS 60.0%
!! GGCATCGGTTACCACACCAC+CGG - chr8.2:46148579-46148598 None:intergenic 60.0%
AGAGAGGCAGTGGTGAGGCG+TGG + chr8.2:46147592-46147611 MS.gene29934:CDS 65.0%
CACCTCCCGTTGAGCTGCAG+CGG - chr8.2:46147329-46147348 None:intergenic 65.0%
CGTTGAGCTGCAGCGGCCAA+TGG - chr8.2:46147322-46147341 None:intergenic 65.0%
GGTGTGGTAACCGATGCCGG+AGG + chr8.2:46148581-46148600 MS.gene29934:CDS 65.0%
TAGAGGTCGGCCTCCGGCAT+CGG - chr8.2:46148594-46148613 None:intergenic 65.0%
GGCCGCTGCAGCTCAACGGG+AGG + chr8.2:46147324-46147343 MS.gene29934:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 46147264 46148736 46147264 ID=MS.gene29934
chr8.2 mRNA 46147264 46148736 46147264 ID=MS.gene29934.t1;Parent=MS.gene29934
chr8.2 exon 46147264 46147784 46147264 ID=MS.gene29934.t1.exon1;Parent=MS.gene29934.t1
chr8.2 CDS 46147264 46147784 46147264 ID=cds.MS.gene29934.t1;Parent=MS.gene29934.t1
chr8.2 exon 46148433 46148736 46148433 ID=MS.gene29934.t1.exon2;Parent=MS.gene29934.t1
chr8.2 CDS 46148433 46148736 46148433 ID=cds.MS.gene29934.t1;Parent=MS.gene29934.t1
Gene Sequence

>MS.gene29934

ATGTATGGTCTCCAAAGTCCAGACATAACTCTTGGAACATCAGAAGTTCTCGCGGCCATTGGCCGCTGCAGCTCAACGGGAGGTGCTAGTGGAAGGCATTGGGTACTTGACCCTGTTGACGGCACATTGGGATTTGTACGGGGCGATCAGTATGCGGTTGCTCTAGCTTTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTTGGGTGTCCCAATTACCCAGTGAAGTCAGAATGGCTAAATTATCAGTACCAGTATCATCAAACAACGATATCGCAAACATCAACAACTCTTGATGCATGCGGAAAAGGATGTGTGTTGTATGCAAAGAGAGGCAGTGGTGAGGCGTGGTTGCAGTCGTTGATTCCTGAAGATAGGACGTTAGAATGGCCAAATTGTGCTAGGCCTATTCGAGTTTCTTCTGTTGATGATCCGGCATTGGCAACTCTATGCGAACCAGTAGAAAGGGCAAACTCAAACCATTCCTTCACAGCTGGCCTTGCTCACAGTGTAGGACTAAGGTATAATATTTCTCTTTTTTTTTCCCGTCAATTGTTCTGCAACTGTACATATTTCAGACATCTGATTTTCTAAAAGTACATCAAGATAATTAGCAATGCAGACTGCAATGCATTTAAACAGTGTCTTGTTTGAAGATTAAGGATAAACAGCTTAATTAACCACTTATTGATATGCATAAGCTGAAAACAACGTACGAACATTTTCTTAGCTCTTTCTATAAGCTATTTCAAAGAGTCTCACAAGTGTTCATGTTAGCAGATAAGCTCAAAGAAGCCTATCAAAACAAGACCCGAGGTAACAAATAGGGTCCGTACAACTAAAATTATACATATATAATATAATATAATTCCAGGCATTTAATTATTGTACTTTCGATAGGAACAATATGGACCCTAAAAAAAAAAAAAAAAACTGGGACGACTTTCATATCTACTGGACATAGGAAGCTATGAAAGATAGGAATCATAGACCAGGCACCTTCCTTCTGTTTTGAGTTCCTAATCTGTATTCTCTGAAATTCCTTGTTTACAATATCTTCCAAAACATAATCTAAGTTTATTACACATATTTTTTATATACATATTTCTCTCTTCCTTTAACACCATTGTTGGAATTGAAATGCTCTACACTCTCAAAATCTGGTACAGAAAACAGCCCTTACGTGTCCACAGTATGGTAAAGTATGCAGCAATAGCAAGGGGAGATGCCGAGATATTCATGAAATTTGCAAAGTCAGGTTACAAAGAAAAGATATGGGATCATGCTGCCGGTGTTGTGATTGTTGAAGAGGCCGGTGGTGTGGTAACCGATGCCGGAGGCCGACCTCTAGACTTTTCAAAGGGAACGTACTTAGAGGGTCTTGACCGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTGATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGA
Protein sequence

>MS.gene29934.t1

MYGLQSPDITLGTSEVLAAIGRCSSTGGASGRHWVLDPVDGTLGFVRGDQYAVALALIEDGKVVLGVLGCPNYPVKSEWLNYQYQYHQTTISQTSTTLDACGKGCVLYAKRGSGEAWLQSLIPEDRTLEWPNCARPIRVSSVDDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKSGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGTYLEGLDRGIIACSGVTLHEKLIDAVYASWDSSNL