Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30784.t1 | XP_003601083.1 | 93.3 | 445 | 27 | 2 | 1 | 443 | 1 | 444 | 5.60E-233 | 816.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30784.t1 | G7J3K0 | 93.3 | 445 | 27 | 2 | 1 | 443 | 1 | 444 | 4.0e-233 | 816.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049821 | MS.gene30784 | 0.81177 | 5.93E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene30784 | 0.81192 | 5.50E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene30784 | 0.864972 | 8.27E-65 | -1.69E-46 |
| MS.gene050807 | MS.gene30784 | 0.803685 | 3.10E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene30784 | 0.805672 | 1.19E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene30784 | 0.809646 | 1.71E-50 | -1.69E-46 |
| MS.gene051789 | MS.gene30784 | 0.812117 | 4.98E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene30784 | 0.817614 | 3.01E-52 | -1.69E-46 |
| MS.gene052142 | MS.gene30784 | 0.802447 | 5.59E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene30784 | 0.805151 | 1.53E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene30784 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene30784 | 0.821319 | 4.30E-53 | -1.69E-46 |
| MS.gene059006 | MS.gene30784 | 0.829492 | 4.99E-55 | -1.69E-46 |
| MS.gene060137 | MS.gene30784 | -0.808752 | 2.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30784.t1 | MTR_3g072840 | 93.258 | 445 | 27 | 2 | 1 | 443 | 1 | 444 | 0.0 | 810 |
| MS.gene30784.t1 | MTR_3g072830 | 54.566 | 449 | 186 | 9 | 1 | 439 | 1 | 441 | 1.57e-151 | 438 |
| MS.gene30784.t1 | MTR_3g007470 | 63.610 | 349 | 124 | 3 | 96 | 443 | 36 | 382 | 5.32e-144 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30784.t1 | AT2G41705 | 51.059 | 425 | 193 | 7 | 25 | 440 | 37 | 455 | 2.50e-119 | 356 |
| MS.gene30784.t1 | AT2G41705 | 51.059 | 425 | 193 | 7 | 25 | 440 | 37 | 455 | 2.50e-119 | 356 |
| MS.gene30784.t1 | AT2G41705 | 51.059 | 425 | 193 | 7 | 25 | 440 | 37 | 455 | 2.50e-119 | 356 |
| MS.gene30784.t1 | AT2G41705 | 51.059 | 425 | 193 | 7 | 25 | 440 | 37 | 455 | 2.50e-119 | 356 |
Find 87 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATCTGCCATCAAATA+TGG | 0.217091 | 3.1:-59593104 | MS.gene30784:intron |
| AGGACTTCAATTTGGTCTAT+TGG | 0.243981 | 3.1:-59591511 | MS.gene30784:CDS |
| TGTCGATCATCATTGGTTTC+TGG | 0.244597 | 3.1:-59592142 | MS.gene30784:CDS |
| TGGTGATATTAGCTTTGTTA+TGG | 0.283155 | 3.1:-59591992 | MS.gene30784:CDS |
| CCCATCTTTGTTTCAACAAA+TGG | 0.283826 | 3.1:-59593776 | MS.gene30784:CDS |
| GCCTGCATTGTTGGACCTCT+TGG | 0.293298 | 3.1:-59591903 | MS.gene30784:CDS |
| AGACTTAACGAGTGCGAAAT+TGG | 0.297010 | 3.1:-59591852 | MS.gene30784:CDS |
| TCATTTGGACCAAGTGGTTT+TGG | 0.299453 | 3.1:-59593154 | MS.gene30784:CDS |
| TGATAGAAAACAAGCATCTT+TGG | 0.307803 | 3.1:-59591443 | MS.gene30784:CDS |
| GGACTTCAATTTGGTCTATT+GGG | 0.318154 | 3.1:-59591510 | MS.gene30784:CDS |
| CTCACTCACATTCTTGAAAC+AGG | 0.318173 | 3.1:+59591351 | None:intergenic |
| ACAATATAGTTATTATTAGA+TGG | 0.318561 | 3.1:+59593818 | None:intergenic |
| TTATATATCAAACCAGAAAA+TGG | 0.319807 | 3.1:-59593881 | MS.gene30784:CDS |
| GTGATAACAGGACTTCAATT+TGG | 0.320323 | 3.1:-59591519 | MS.gene30784:CDS |
| TACTTATTGCAAAAGTCATT+TGG | 0.339763 | 3.1:-59593169 | MS.gene30784:CDS |
| GGTGATATTAGCTTTGTTAT+GGG | 0.342133 | 3.1:-59591991 | MS.gene30784:CDS |
| GGCAATTCATGTTCCATTGC+AGG | 0.342935 | 3.1:+59593842 | None:intergenic |
| CACTGGATCTTGTCTTTGCT+CGG | 0.345396 | 3.1:-59592411 | MS.gene30784:CDS |
| TGTTTCGTGTCTAACTCATT+TGG | 0.377439 | 3.1:-59593570 | MS.gene30784:CDS |
| TTGTTGGACCTCTTGGTGTA+TGG | 0.380313 | 3.1:-59591896 | MS.gene30784:CDS |
| GACCTCTTGGTGTATGGCTT+AGG | 0.383143 | 3.1:-59591890 | MS.gene30784:CDS |
| TCCATTTGTTGAAACAAAGA+TGG | 0.386494 | 3.1:+59593775 | None:intergenic |
| GGTCTAACAACCGGCTACTT+AGG | 0.389772 | 3.1:-59592492 | MS.gene30784:CDS |
| TCTTTGCTCGGCTTTGTACT+AGG | 0.391256 | 3.1:-59592399 | MS.gene30784:intron |
| AATTGTGATACTGTGATAAC+AGG | 0.402053 | 3.1:-59591531 | MS.gene30784:CDS |
| AAAACTTACTGATTTCTTGA+GGG | 0.431062 | 3.1:+59591749 | None:intergenic |
| GTTGGGGTTCTGCAGTTAGC+AGG | 0.434224 | 3.1:-59594030 | MS.gene30784:CDS |
| CGTGAGTGTGGTTCAGCTGC+AGG | 0.439210 | 3.1:-59593959 | MS.gene30784:CDS |
| CATGGAGCGAACGAGCAGTT+GGG | 0.449685 | 3.1:-59594047 | MS.gene30784:CDS |
| GCCTAACAACTTTCAGCGGC+TGG | 0.451556 | 3.1:-59592467 | MS.gene30784:CDS |
| TCCAGCCGCTGAAAGTTGTT+AGG | 0.453775 | 3.1:+59592466 | None:intergenic |
| TGACAGCTTCCCTCGTCAAT+TGG | 0.455108 | 3.1:-59592033 | MS.gene30784:CDS |
| CTGGTTTGATATATAAAGAC+AGG | 0.458399 | 3.1:+59593888 | None:intergenic |
| GTAGCATTGTCGATCATCAT+TGG | 0.460693 | 3.1:-59592149 | MS.gene30784:CDS |
| TTGTGGTTAGCCTGCATTGT+TGG | 0.460887 | 3.1:-59591912 | MS.gene30784:CDS |
| ATGCTCGAGCTCAGTGTCGC+TGG | 0.460917 | 3.1:-59592435 | MS.gene30784:CDS |
| CGAAACAAATTCCAGTAGCT+TGG | 0.472897 | 3.1:+59593586 | None:intergenic |
| GTCTAACAACCGGCTACTTA+GGG | 0.474314 | 3.1:-59592491 | MS.gene30784:CDS |
| CTAGCCATTGGTCTAACAAC+CGG | 0.476478 | 3.1:-59592501 | MS.gene30784:CDS |
| CAGAGGCGAACCATATTTGA+TGG | 0.478725 | 3.1:+59593094 | None:intergenic |
| AGCTCAGTGTCGCTGGACAC+TGG | 0.485522 | 3.1:-59592428 | MS.gene30784:CDS |
| ATGGGGTGTGAGTAGTGCTT+TGG | 0.485675 | 3.1:-59591973 | MS.gene30784:CDS |
| CATGAAGTTACCCAAGCTAC+TGG | 0.489022 | 3.1:-59593597 | MS.gene30784:CDS |
| GAGAGCATTTGTCTATGCTA+TGG | 0.494452 | 3.1:-59591421 | MS.gene30784:CDS |
| AAAAGAAAATGAAACGCAAA+TGG | 0.498184 | 3.1:+59591395 | None:intergenic |
| CCAACTGCTCGTTCGCTCCA+TGG | 0.502807 | 3.1:+59594048 | None:intergenic |
| GAAACAAATTCCAGTAGCTT+GGG | 0.506298 | 3.1:+59593587 | None:intergenic |
| CCATGGAGCGAACGAGCAGT+TGG | 0.508369 | 3.1:-59594048 | MS.gene30784:CDS |
| CTTTGTTTCAACAAATGGAA+AGG | 0.511711 | 3.1:-59593771 | MS.gene30784:CDS |
| CATTGGTTTCTGGACGGCGA+AGG | 0.512919 | 3.1:-59592132 | MS.gene30784:CDS |
| GTGATATTAGCTTTGTTATG+GGG | 0.520721 | 3.1:-59591990 | MS.gene30784:CDS |
| GGTAGTGACGATAGTGTTGT+TGG | 0.522919 | 3.1:-59592012 | MS.gene30784:CDS |
| AACGAGTGCGAAATTGGAGG+AGG | 0.526946 | 3.1:-59591846 | MS.gene30784:CDS |
| GGAGGAAGGAAAAGTGAGAG+TGG | 0.527956 | 3.1:-59593920 | MS.gene30784:CDS |
| CCATTTGTTGAAACAAAGAT+GGG | 0.530182 | 3.1:+59593776 | None:intergenic |
| CCATATTTGATGGCAGATCA+AGG | 0.532230 | 3.1:+59593104 | None:intergenic |
| ATTGGTTTCTGGACGGCGAA+GGG | 0.538719 | 3.1:-59592131 | MS.gene30784:CDS |
| TGTTTCTGCTGCTTGTATCA+CGG | 0.540208 | 3.1:-59591784 | MS.gene30784:CDS |
| GGACGGCGAAGGGATTCAAA+TGG | 0.542568 | 3.1:-59592121 | MS.gene30784:CDS |
| TATATCAAAACTAAACTGGA+AGG | 0.543094 | 3.1:-59592057 | MS.gene30784:CDS |
| ACCAAGAGGTCCAACAATGC+AGG | 0.546644 | 3.1:+59591902 | None:intergenic |
| CTGGTCACGCCAAAACCACT+TGG | 0.550500 | 3.1:+59593145 | None:intergenic |
| CAAAAGTCATTTGGACCAAG+TGG | 0.552223 | 3.1:-59593160 | MS.gene30784:CDS |
| ACTTACTGATTTCTTGAGGG+TGG | 0.554227 | 3.1:+59591752 | None:intergenic |
| TGTTAGGCTCCCTAAGTAGC+CGG | 0.558390 | 3.1:+59592482 | None:intergenic |
| GTATCTGAACATCTAGCCAT+TGG | 0.561646 | 3.1:-59592513 | MS.gene30784:CDS |
| GGAAGGAAAAGTGAGAGTGG+TGG | 0.583294 | 3.1:-59593917 | MS.gene30784:CDS |
| GATACAAGCAGCAGAAACAT+TGG | 0.593081 | 3.1:+59591788 | None:intergenic |
| TTGTTGAAACAAAGATGGGA+AGG | 0.595444 | 3.1:+59593780 | None:intergenic |
| CTTAACGAGTGCGAAATTGG+AGG | 0.610168 | 3.1:-59591849 | MS.gene30784:CDS |
| AAGATGGGAAGGTGTTCTTG+TGG | 0.616586 | 3.1:+59593791 | None:intergenic |
| ACGAGTGCGAAATTGGAGGA+GGG | 0.618522 | 3.1:-59591845 | MS.gene30784:CDS |
| ATTTGTGTACAATCCTGCAA+TGG | 0.626316 | 3.1:-59593855 | MS.gene30784:CDS |
| GGGAGCCTAACAACTTTCAG+CGG | 0.627758 | 3.1:-59592471 | MS.gene30784:CDS |
| ATGGAGCGAACGAGCAGTTG+GGG | 0.627866 | 3.1:-59594046 | MS.gene30784:CDS |
| AACCTAAGCCATACACCAAG+AGG | 0.629036 | 3.1:+59591888 | None:intergenic |
| GATCATCATTGGTTTCTGGA+CGG | 0.641979 | 3.1:-59592138 | MS.gene30784:CDS |
| GTAGCCGGTTGTTAGACCAA+TGG | 0.643579 | 3.1:+59592497 | None:intergenic |
| GGCTAGATGTTCAGATACGT+AGG | 0.652546 | 3.1:+59592518 | None:intergenic |
| TCACTCACATTCTTGAAACA+GGG | 0.660582 | 3.1:+59591352 | None:intergenic |
| ATATAGTTATTATTAGATGG+CGG | 0.673569 | 3.1:+59593821 | None:intergenic |
| GTGTGTCAAAATGTAGATGT+TGG | 0.674681 | 3.1:-59594001 | MS.gene30784:CDS |
| ATCGTCACTACCAATTGACG+AGG | 0.676634 | 3.1:+59592023 | None:intergenic |
| GAAGCTGAGAATCGTGAGTG+TGG | 0.687844 | 3.1:-59593971 | MS.gene30784:CDS |
| TAAATATGCAGGTCTTAACG+AGG | 0.700815 | 3.1:-59593192 | MS.gene30784:intron |
| GTGGTGGTGAAGCTCAGTTG+TGG | 0.736786 | 3.1:-59591929 | MS.gene30784:CDS |
| TCGTCACTACCAATTGACGA+GGG | 0.749970 | 3.1:+59592024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATAGTTATTATTAGA+TGG | + | chr3.1:59591587-59591606 | None:intergenic | 15.0% |
| !! | ATAATTCCTAAGATTAAAAA+TGG | - | chr3.1:59592589-59592608 | MS.gene30784:intron | 15.0% |
| !! | TAATATTTCAAAATAGTCTA+TGG | - | chr3.1:59593734-59593753 | MS.gene30784:intron | 15.0% |
| !! | TATATCATTAACAACAAAAA+AGG | + | chr3.1:59591701-59591720 | None:intergenic | 15.0% |
| !! | TTTAATAAAATGCATTTGAT+AGG | + | chr3.1:59592745-59592764 | None:intergenic | 15.0% |
| !!! | TTTATTTCTTTGAATTCTAA+AGG | - | chr3.1:59592349-59592368 | MS.gene30784:intron | 15.0% |
| !! | AAATAGAGAAAAAAAACTCA+AGG | + | chr3.1:59591904-59591923 | None:intergenic | 20.0% |
| !! | AATTGTCATAATAAATATGC+AGG | - | chr3.1:59592199-59592218 | MS.gene30784:intron | 20.0% |
| !! | AATTTCAACAACAAATTAGA+CGG | - | chr3.1:59592014-59592033 | MS.gene30784:CDS | 20.0% |
| !! | ATATAGTTATTATTAGATGG+CGG | + | chr3.1:59591584-59591603 | None:intergenic | 20.0% |
| !! | ATGTGTTAAATTATGTTTAG+TGG | - | chr3.1:59592051-59592070 | MS.gene30784:CDS | 20.0% |
| !! | GAAATAAATGAGTTCAAAAA+TGG | - | chr3.1:59593451-59593470 | MS.gene30784:intron | 20.0% |
| !! | TGATTAATGAATATAACTAG+TGG | - | chr3.1:59592075-59592094 | MS.gene30784:CDS | 20.0% |
| !! | TGCATATTTATTATGACAAT+TGG | + | chr3.1:59592200-59592219 | None:intergenic | 20.0% |
| !! | TTATATATCAAACCAGAAAA+TGG | - | chr3.1:59591521-59591540 | MS.gene30784:CDS | 20.0% |
| !!! | ATAGTTCCATTTTTAATCTT+AGG | + | chr3.1:59592598-59592617 | None:intergenic | 20.0% |
| !!! | ATGCTTTTACTTTGTTTTTT+AGG | - | chr3.1:59591769-59591788 | MS.gene30784:CDS | 20.0% |
| !!! | ATGTTAGTAAATTTAGAGTA+TGG | - | chr3.1:59592412-59592431 | MS.gene30784:CDS | 20.0% |
| !!! | CTTTTATATCAAAACTAAAC+TGG | - | chr3.1:59593341-59593360 | MS.gene30784:intron | 20.0% |
| ! | AAAAGAAAATGAAACGCAAA+TGG | + | chr3.1:59594010-59594029 | None:intergenic | 25.0% |
| ! | AAAGCAATTCAAGTCTTTAT+TGG | - | chr3.1:59592482-59592501 | MS.gene30784:CDS | 25.0% |
| ! | AAATAACCATGGTAGTTATA+AGG | - | chr3.1:59592387-59592406 | MS.gene30784:intron | 25.0% |
| ! | ATAAATGAGTTCAAAAATGG+TGG | - | chr3.1:59593454-59593473 | MS.gene30784:intron | 25.0% |
| ! | CATATTAAGAAGAGTTTGTA+AGG | - | chr3.1:59593203-59593222 | MS.gene30784:intron | 25.0% |
| ! | GGAAATATGTTAAATGAGTT+TGG | - | chr3.1:59591964-59591983 | MS.gene30784:CDS | 25.0% |
| ! | TAAAAGGAGAAAAATAACCA+TGG | - | chr3.1:59592376-59592395 | MS.gene30784:intron | 25.0% |
| ! | TAATGAATATAACTAGTGGA+TGG | - | chr3.1:59592079-59592098 | MS.gene30784:CDS | 25.0% |
| ! | TACTTATTGCAAAAGTCATT+TGG | - | chr3.1:59592233-59592252 | MS.gene30784:intron | 25.0% |
| ! | TATATCAAAACTAAACTGGA+AGG | - | chr3.1:59593345-59593364 | MS.gene30784:intron | 25.0% |
| ! | TTATCATGATGACTAAATCT+TGG | - | chr3.1:59592435-59592454 | MS.gene30784:CDS | 25.0% |
| ! | TTTCTTGATGTTAAAGAGTA+TGG | - | chr3.1:59591932-59591951 | MS.gene30784:CDS | 25.0% |
| !! | ATTGCTATAAACCTGATTTT+TGG | - | chr3.1:59593831-59593850 | MS.gene30784:CDS | 25.0% |
| !! | ATTTGCGTTTCATTTTCTTT+TGG | - | chr3.1:59594009-59594028 | MS.gene30784:CDS | 25.0% |
| !! | GAATTCTAAAGGAGAATAAA+AGG | - | chr3.1:59592360-59592379 | MS.gene30784:intron | 25.0% |
| !! | GAATTTTTGACACATGATTT+TGG | - | chr3.1:59593794-59593813 | MS.gene30784:CDS | 25.0% |
| !! | TTTGCGTTTCATTTTCTTTT+GGG | - | chr3.1:59594010-59594029 | MS.gene30784:CDS | 25.0% |
| !!! | AAAAACTTACTGATTTCTTG+AGG | + | chr3.1:59593657-59593676 | None:intergenic | 25.0% |
| !!! | AAAACTTACTGATTTCTTGA+GGG | + | chr3.1:59593656-59593675 | None:intergenic | 25.0% |
| !!! | ACTTCTATTTTTGCTTTCTT+AGG | - | chr3.1:59592696-59592715 | MS.gene30784:intron | 25.0% |
| !!! | TGGTTTGGTTTTGTTTTTAA+AGG | - | chr3.1:59592853-59592872 | MS.gene30784:intron | 25.0% |
| !!! | TTACTTTGTTTTTTAGGTTC+TGG | - | chr3.1:59591775-59591794 | MS.gene30784:CDS | 25.0% |
| AAGAAGAGTTTGTAAGGAAA+TGG | - | chr3.1:59593209-59593228 | MS.gene30784:intron | 30.0% | |
| AATTGTGATACTGTGATAAC+AGG | - | chr3.1:59593871-59593890 | MS.gene30784:CDS | 30.0% | |
| ACATAACCTTATAACTACCA+TGG | + | chr3.1:59592396-59592415 | None:intergenic | 30.0% | |
| ATAAGTGCGATTTAAAGACT+AGG | - | chr3.1:59593028-59593047 | MS.gene30784:intron | 30.0% | |
| TGATAGAAAACAAGCATCTT+TGG | - | chr3.1:59593959-59593978 | MS.gene30784:CDS | 30.0% | |
| TGTGAAGACATAAAACAAGT+AGG | - | chr3.1:59591659-59591678 | MS.gene30784:intron | 30.0% | |
| TTGCTTTCTTAGGATCAATA+TGG | - | chr3.1:59592706-59592725 | MS.gene30784:intron | 30.0% | |
| ! | CCATTTGTTGAAACAAAGAT+GGG | + | chr3.1:59591629-59591648 | None:intergenic | 30.0% |
| ! | CTGGTTTGATATATAAAGAC+AGG | + | chr3.1:59591517-59591536 | None:intergenic | 30.0% |
| ! | CTTTGTTTCAACAAATGGAA+AGG | - | chr3.1:59591631-59591650 | MS.gene30784:intron | 30.0% |
| ! | CTTTTACACATTTTCCAGAT+TGG | - | chr3.1:59592814-59592833 | MS.gene30784:intron | 30.0% |
| ! | GTAAGGAAATGGAATTTTGT+AGG | - | chr3.1:59593220-59593239 | MS.gene30784:intron | 30.0% |
| ! | TACACAAATGTTCCATTTTC+TGG | + | chr3.1:59591536-59591555 | None:intergenic | 30.0% |
| ! | TCCATTTGTTGAAACAAAGA+TGG | + | chr3.1:59591630-59591649 | None:intergenic | 30.0% |
| ! | TCTAATCTCATTTTACAGCA+TGG | + | chr3.1:59593150-59593169 | None:intergenic | 30.0% |
| ! | TTTTTGACACATGATTTTGG+AGG | - | chr3.1:59593797-59593816 | MS.gene30784:CDS | 30.0% |
| !! | ACTTGAATTGCTTTTCAATC+AGG | + | chr3.1:59592476-59592495 | None:intergenic | 30.0% |
| !! | GGTGATATTAGCTTTGTTAT+GGG | - | chr3.1:59593411-59593430 | MS.gene30784:intron | 30.0% |
| !! | GTGATATTAGCTTTGTTATG+GGG | - | chr3.1:59593412-59593431 | MS.gene30784:intron | 30.0% |
| !! | TGGTGATATTAGCTTTGTTA+TGG | - | chr3.1:59593410-59593429 | MS.gene30784:intron | 30.0% |
| !!! | CAGATTGGTTCCTTTTTTAT+GGG | - | chr3.1:59592829-59592848 | MS.gene30784:intron | 30.0% |
| !!! | TTTTGAAATGGCTTCGATTT+GGG | - | chr3.1:59593581-59593600 | MS.gene30784:CDS | 30.0% |
| !!! | TTTTTGAAATGGCTTCGATT+TGG | - | chr3.1:59593580-59593599 | MS.gene30784:CDS | 30.0% |
| AAAATGGAACTATCTGTTCC+AGG | - | chr3.1:59592605-59592624 | MS.gene30784:intron | 35.0% | |
| AATGAGTTCAAAAATGGTGG+TGG | - | chr3.1:59593457-59593476 | MS.gene30784:intron | 35.0% | |
| ACCAAACCATCCCATAAAAA+AGG | + | chr3.1:59592842-59592861 | None:intergenic | 35.0% | |
| AGGACTTCAATTTGGTCTAT+TGG | - | chr3.1:59593891-59593910 | MS.gene30784:CDS | 35.0% | |
| ATTTGTGTACAATCCTGCAA+TGG | - | chr3.1:59591547-59591566 | MS.gene30784:intron | 35.0% | |
| CCATAAAAAAGGAACCAATC+TGG | + | chr3.1:59592831-59592850 | None:intergenic | 35.0% | |
| CTACTCGACGCAATTAAATT+AGG | - | chr3.1:59592138-59592157 | MS.gene30784:CDS | 35.0% | |
| GAAACAAATTCCAGTAGCTT+GGG | + | chr3.1:59591818-59591837 | None:intergenic | 35.0% | |
| GCTGCATTAACTAACATGTT+TGG | - | chr3.1:59592509-59592528 | MS.gene30784:CDS | 35.0% | |
| GGACTTCAATTTGGTCTATT+GGG | - | chr3.1:59593892-59593911 | MS.gene30784:CDS | 35.0% | |
| GTAAAAAACGGTATGATCAC+TGG | + | chr3.1:59592279-59592298 | None:intergenic | 35.0% | |
| GTGATAACAGGACTTCAATT+TGG | - | chr3.1:59593883-59593902 | MS.gene30784:CDS | 35.0% | |
| GTGTGTCAAAATGTAGATGT+TGG | - | chr3.1:59591401-59591420 | MS.gene30784:CDS | 35.0% | |
| TAAATATGCAGGTCTTAACG+AGG | - | chr3.1:59592210-59592229 | MS.gene30784:intron | 35.0% | |
| TGGCAGATCAAGGTAAAAAA+CGG | + | chr3.1:59592291-59592310 | None:intergenic | 35.0% | |
| TGTTTCGTGTCTAACTCATT+TGG | - | chr3.1:59591832-59591851 | MS.gene30784:CDS | 35.0% | |
| TTGTTGAAACAAAGATGGGA+AGG | + | chr3.1:59591625-59591644 | None:intergenic | 35.0% | |
| ! | CCCATCTTTGTTTCAACAAA+TGG | - | chr3.1:59591626-59591645 | MS.gene30784:intron | 35.0% |
| ! | TAAAGAGTATGGTAGATGCT+AGG | - | chr3.1:59591943-59591962 | MS.gene30784:CDS | 35.0% |
| !! | ATATAGCTTTTCAAGGAGGA+AGG | - | chr3.1:59591468-59591487 | MS.gene30784:CDS | 35.0% |
| !! | CTAACTCATTTGGCTGTTTT+TGG | - | chr3.1:59591842-59591861 | MS.gene30784:CDS | 35.0% |
| !!! | ATAAACCTGATTTTTGGTGC+AGG | - | chr3.1:59593837-59593856 | MS.gene30784:CDS | 35.0% |
| !!! | CCAGATTGGTTCCTTTTTTA+TGG | - | chr3.1:59592828-59592847 | MS.gene30784:intron | 35.0% |
| !!! | TCCTTTTTTATGGGATGGTT+TGG | - | chr3.1:59592838-59592857 | MS.gene30784:intron | 35.0% |
| !!! | TTGGTTCCTTTTTTATGGGA+TGG | - | chr3.1:59592833-59592852 | MS.gene30784:intron | 35.0% |
| AATGCTTCAAGCTCAAAACC+TGG | + | chr3.1:59592626-59592645 | None:intergenic | 40.0% | |
| AGACTTAACGAGTGCGAAAT+TGG | - | chr3.1:59593550-59593569 | MS.gene30784:CDS | 40.0% | |
| ATTCACCTGCACCAAAAATC+AGG | + | chr3.1:59593845-59593864 | None:intergenic | 40.0% | |
| CAAAAGTCATTTGGACCAAG+TGG | - | chr3.1:59592242-59592261 | MS.gene30784:intron | 40.0% | |
| CCTTGATCTGCCATCAAATA+TGG | - | chr3.1:59592298-59592317 | MS.gene30784:intron | 40.0% | |
| CGAAACAAATTCCAGTAGCT+TGG | + | chr3.1:59591819-59591838 | None:intergenic | 40.0% | |
| CGACGCAATTAAATTAGGAG+AGG | - | chr3.1:59592143-59592162 | MS.gene30784:CDS | 40.0% | |
| CTAAGAATCAGTGAATGCAG+AGG | + | chr3.1:59592328-59592347 | None:intergenic | 40.0% | |
| GATACAAGCAGCAGAAACAT+TGG | + | chr3.1:59593617-59593636 | None:intergenic | 40.0% | |
| GTAGCATTGTCGATCATCAT+TGG | - | chr3.1:59593253-59593272 | MS.gene30784:intron | 40.0% | |
| GTATCTGAACATCTAGCCAT+TGG | - | chr3.1:59592889-59592908 | MS.gene30784:intron | 40.0% | |
| TGCGTCGAGTAGATGATTAA+TGG | + | chr3.1:59592130-59592149 | None:intergenic | 40.0% | |
| ! | CCATATTTGATGGCAGATCA+AGG | + | chr3.1:59592301-59592320 | None:intergenic | 40.0% |
| ! | GCAGGAGATATAGCTTTTCA+AGG | - | chr3.1:59591461-59591480 | MS.gene30784:CDS | 40.0% |
| ! | TACTAGTTTCCTCACAGTTG+AGG | - | chr3.1:59591745-59591764 | MS.gene30784:intron | 40.0% |
| ! | TCATTTGGACCAAGTGGTTT+TGG | - | chr3.1:59592248-59592267 | MS.gene30784:intron | 40.0% |
| ! | TGTTTCTGCTGCTTGTATCA+CGG | - | chr3.1:59593618-59593637 | MS.gene30784:intron | 40.0% |
| !! | ACTTACTGATTTCTTGAGGG+TGG | + | chr3.1:59593653-59593672 | None:intergenic | 40.0% |
| !! | GAGAGCATTTGTCTATGCTA+TGG | - | chr3.1:59593981-59594000 | MS.gene30784:CDS | 40.0% |
| !! | GATCATCATTGGTTTCTGGA+CGG | - | chr3.1:59593264-59593283 | MS.gene30784:intron | 40.0% |
| !! | GGAGATATAGCTTTTCAAGG+AGG | - | chr3.1:59591464-59591483 | MS.gene30784:CDS | 40.0% |
| !! | TGTCGATCATCATTGGTTTC+TGG | - | chr3.1:59593260-59593279 | MS.gene30784:intron | 40.0% |
| !! | TTGGAGGAGGGTTTTTGAAA+TGG | - | chr3.1:59593569-59593588 | MS.gene30784:CDS | 40.0% |
| !!! | TGGCTGTTTTTGGCATTCTT+GGG | - | chr3.1:59591852-59591871 | MS.gene30784:CDS | 40.0% |
| !!! | TTGGCTGTTTTTGGCATTCT+TGG | - | chr3.1:59591851-59591870 | MS.gene30784:CDS | 40.0% |
| AACCTAAGCCATACACCAAG+AGG | + | chr3.1:59593517-59593536 | None:intergenic | 45.0% | |
| ATCGTCACTACCAATTGACG+AGG | + | chr3.1:59593382-59593401 | None:intergenic | 45.0% | |
| CACTGGATCTTGTCTTTGCT+CGG | - | chr3.1:59592991-59593010 | MS.gene30784:intron | 45.0% | |
| CAGAGGCGAACCATATTTGA+TGG | + | chr3.1:59592311-59592330 | None:intergenic | 45.0% | |
| CATGAAGTTACCCAAGCTAC+TGG | - | chr3.1:59591805-59591824 | MS.gene30784:CDS | 45.0% | |
| CTTAACGAGTGCGAAATTGG+AGG | - | chr3.1:59593553-59593572 | MS.gene30784:CDS | 45.0% | |
| GGCAATTCATGTTCCATTGC+AGG | + | chr3.1:59591563-59591582 | None:intergenic | 45.0% | |
| GGCTAGATGTTCAGATACGT+AGG | + | chr3.1:59592887-59592906 | None:intergenic | 45.0% | |
| GGTAGTGACGATAGTGTTGT+TGG | - | chr3.1:59593390-59593409 | MS.gene30784:intron | 45.0% | |
| GTCTAACAACCGGCTACTTA+GGG | - | chr3.1:59592911-59592930 | MS.gene30784:intron | 45.0% | |
| TCGTCACTACCAATTGACGA+GGG | + | chr3.1:59593381-59593400 | None:intergenic | 45.0% | |
| ! | AAAAGCATGCCTCAACTGTG+AGG | + | chr3.1:59591757-59591776 | None:intergenic | 45.0% |
| ! | CTAGCCATTGGTCTAACAAC+CGG | - | chr3.1:59592901-59592920 | MS.gene30784:intron | 45.0% |
| ! | TCTTTGCTCGGCTTTGTACT+AGG | - | chr3.1:59593003-59593022 | MS.gene30784:intron | 45.0% |
| ! | TTGTTGGACCTCTTGGTGTA+TGG | - | chr3.1:59593506-59593525 | MS.gene30784:intron | 45.0% |
| !! | AAGATGGGAAGGTGTTCTTG+TGG | + | chr3.1:59591614-59591633 | None:intergenic | 45.0% |
| !! | TTGTGGTTAGCCTGCATTGT+TGG | - | chr3.1:59593490-59593509 | MS.gene30784:intron | 45.0% |
| !!! | GGCTGTTTTTGGCATTCTTG+GGG | - | chr3.1:59591853-59591872 | MS.gene30784:CDS | 45.0% |
| AACGAGTGCGAAATTGGAGG+AGG | - | chr3.1:59593556-59593575 | MS.gene30784:CDS | 50.0% | |
| ACCAAGAGGTCCAACAATGC+AGG | + | chr3.1:59593503-59593522 | None:intergenic | 50.0% | |
| ACGAGTGCGAAATTGGAGGA+GGG | - | chr3.1:59593557-59593576 | MS.gene30784:CDS | 50.0% | |
| ATGGGGTGTGAGTAGTGCTT+TGG | - | chr3.1:59593429-59593448 | MS.gene30784:intron | 50.0% | |
| GAAGCTGAGAATCGTGAGTG+TGG | - | chr3.1:59591431-59591450 | MS.gene30784:CDS | 50.0% | |
| GGAAGGAAAAGTGAGAGTGG+TGG | - | chr3.1:59591485-59591504 | MS.gene30784:CDS | 50.0% | |
| GGAGGAAGGAAAAGTGAGAG+TGG | - | chr3.1:59591482-59591501 | MS.gene30784:CDS | 50.0% | |
| GGGAGCCTAACAACTTTCAG+CGG | - | chr3.1:59592931-59592950 | MS.gene30784:intron | 50.0% | |
| GGTCTAACAACCGGCTACTT+AGG | - | chr3.1:59592910-59592929 | MS.gene30784:intron | 50.0% | |
| GTAGCCGGTTGTTAGACCAA+TGG | + | chr3.1:59592908-59592927 | None:intergenic | 50.0% | |
| TCCAGCCGCTGAAAGTTGTT+AGG | + | chr3.1:59592939-59592958 | None:intergenic | 50.0% | |
| TGACAGCTTCCCTCGTCAAT+TGG | - | chr3.1:59593369-59593388 | MS.gene30784:intron | 50.0% | |
| TGTTAGGCTCCCTAAGTAGC+CGG | + | chr3.1:59592923-59592942 | None:intergenic | 50.0% | |
| ! | ATTGGTTTCTGGACGGCGAA+GGG | - | chr3.1:59593271-59593290 | MS.gene30784:intron | 50.0% |
| ! | GACCTCTTGGTGTATGGCTT+AGG | - | chr3.1:59593512-59593531 | MS.gene30784:intron | 50.0% |
| ATGGAGCGAACGAGCAGTTG+GGG | - | chr3.1:59591356-59591375 | MS.gene30784:CDS | 55.0% | |
| CTGGTCACGCCAAAACCACT+TGG | + | chr3.1:59592260-59592279 | None:intergenic | 55.0% | |
| GCCTAACAACTTTCAGCGGC+TGG | - | chr3.1:59592935-59592954 | MS.gene30784:intron | 55.0% | |
| GCCTGCATTGTTGGACCTCT+TGG | - | chr3.1:59593499-59593518 | MS.gene30784:intron | 55.0% | |
| GGACGGCGAAGGGATTCAAA+TGG | - | chr3.1:59593281-59593300 | MS.gene30784:intron | 55.0% | |
| GTTGGGGTTCTGCAGTTAGC+AGG | - | chr3.1:59591372-59591391 | MS.gene30784:CDS | 55.0% | |
| ! | GTGGTGGTGAAGCTCAGTTG+TGG | - | chr3.1:59593473-59593492 | MS.gene30784:intron | 55.0% |
| !! | CATTGGTTTCTGGACGGCGA+AGG | - | chr3.1:59593270-59593289 | MS.gene30784:intron | 55.0% |
| ATGCTCGAGCTCAGTGTCGC+TGG | - | chr3.1:59592967-59592986 | MS.gene30784:intron | 60.0% | |
| CGTGAGTGTGGTTCAGCTGC+AGG | - | chr3.1:59591443-59591462 | MS.gene30784:CDS | 60.0% | |
| ! | AGCTCAGTGTCGCTGGACAC+TGG | - | chr3.1:59592974-59592993 | MS.gene30784:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 59591356 | 59594068 | 59591356 | ID=MS.gene30784 |
| chr3.1 | mRNA | 59591356 | 59594068 | 59591356 | ID=MS.gene30784.t1;Parent=MS.gene30784 |
| chr3.1 | exon | 59593748 | 59594068 | 59593748 | ID=MS.gene30784.t1.exon1;Parent=MS.gene30784.t1 |
| chr3.1 | CDS | 59593748 | 59594068 | 59593748 | ID=cds.MS.gene30784.t1;Parent=MS.gene30784.t1 |
| chr3.1 | exon | 59593550 | 59593633 | 59593550 | ID=MS.gene30784.t1.exon2;Parent=MS.gene30784.t1 |
| chr3.1 | CDS | 59593550 | 59593633 | 59593550 | ID=cds.MS.gene30784.t1;Parent=MS.gene30784.t1 |
| chr3.1 | exon | 59593105 | 59593203 | 59593105 | ID=MS.gene30784.t1.exon3;Parent=MS.gene30784.t1 |
| chr3.1 | CDS | 59593105 | 59593203 | 59593105 | ID=cds.MS.gene30784.t1;Parent=MS.gene30784.t1 |
| chr3.1 | exon | 59592400 | 59592592 | 59592400 | ID=MS.gene30784.t1.exon4;Parent=MS.gene30784.t1 |
| chr3.1 | CDS | 59592400 | 59592592 | 59592400 | ID=cds.MS.gene30784.t1;Parent=MS.gene30784.t1 |
| chr3.1 | exon | 59591758 | 59592182 | 59591758 | ID=MS.gene30784.t1.exon5;Parent=MS.gene30784.t1 |
| chr3.1 | CDS | 59591758 | 59592182 | 59591758 | ID=cds.MS.gene30784.t1;Parent=MS.gene30784.t1 |
| chr3.1 | exon | 59591356 | 59591565 | 59591356 | ID=MS.gene30784.t1.exon6;Parent=MS.gene30784.t1 |
| chr3.1 | CDS | 59591356 | 59591565 | 59591356 | ID=cds.MS.gene30784.t1;Parent=MS.gene30784.t1 |
| Gene Sequence |
| Protein sequence |
