Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31289.t1 | XP_013456093.1 | 85 | 320 | 41 | 1 | 1 | 313 | 1 | 320 | 2.50E-147 | 531.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31289.t1 | Q9FHE1 | 40.1 | 182 | 92 | 6 | 56 | 223 | 277 | 455 | 9.7e-23 | 109.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31289.t1 | A0A072UK42 | 85.0 | 320 | 41 | 1 | 1 | 313 | 1 | 320 | 1.8e-147 | 531.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene31289 | MS.gene90825 | PPI |
MS.gene31289 | MS.gene97346 | PPI |
MS.gene31289 | MS.gene029093 | PPI |
MS.gene31289 | MS.gene066439 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31289.t1 | MTR_4g063670 | 89.688 | 320 | 26 | 1 | 1 | 313 | 1 | 320 | 0.0 | 568 |
MS.gene31289.t1 | MTR_0867s0010 | 71.473 | 319 | 84 | 1 | 1 | 312 | 1 | 319 | 6.47e-152 | 429 |
MS.gene31289.t1 | MTR_4g083510 | 68.224 | 321 | 94 | 2 | 1 | 313 | 1 | 321 | 3.56e-150 | 424 |
MS.gene31289.t1 | MTR_1g051185 | 77.320 | 291 | 34 | 2 | 1 | 284 | 1 | 266 | 1.56e-149 | 421 |
MS.gene31289.t1 | MTR_3g069460 | 84.483 | 174 | 27 | 0 | 1 | 174 | 1 | 174 | 3.79e-108 | 312 |
MS.gene31289.t1 | MTR_8g015750 | 63.861 | 202 | 50 | 3 | 118 | 312 | 1 | 186 | 8.09e-72 | 220 |
MS.gene31289.t1 | MTR_7g088160 | 40.432 | 324 | 150 | 9 | 21 | 312 | 76 | 388 | 3.55e-62 | 202 |
MS.gene31289.t1 | MTR_7g107340 | 38.019 | 313 | 156 | 10 | 6 | 312 | 54 | 334 | 5.17e-47 | 161 |
MS.gene31289.t1 | MTR_8g015740 | 68.293 | 82 | 26 | 0 | 1 | 82 | 49 | 130 | 7.79e-34 | 120 |
MS.gene31289.t1 | MTR_7g114170 | 33.123 | 317 | 134 | 12 | 6 | 311 | 39 | 288 | 1.49e-26 | 106 |
MS.gene31289.t1 | MTR_6g081150 | 31.416 | 226 | 90 | 8 | 19 | 244 | 16 | 176 | 3.83e-20 | 86.3 |
MS.gene31289.t1 | MTR_2g023560 | 68.966 | 58 | 18 | 0 | 50 | 107 | 61 | 118 | 1.18e-19 | 83.2 |
MS.gene31289.t1 | MTR_4g013220 | 26.432 | 227 | 154 | 6 | 22 | 237 | 55 | 279 | 1.21e-16 | 79.7 |
MS.gene31289.t1 | MTR_6g453050 | 27.322 | 183 | 117 | 6 | 22 | 191 | 55 | 234 | 4.52e-16 | 77.8 |
MS.gene31289.t1 | MTR_3g067785 | 25.991 | 227 | 155 | 6 | 22 | 237 | 55 | 279 | 8.15e-16 | 77.0 |
MS.gene31289.t1 | MTR_4g026120 | 25.991 | 227 | 155 | 6 | 22 | 237 | 55 | 279 | 8.97e-16 | 77.0 |
MS.gene31289.t1 | MTR_4g036435 | 25.991 | 227 | 155 | 6 | 22 | 237 | 55 | 279 | 8.97e-16 | 77.0 |
MS.gene31289.t1 | MTR_5g066280 | 25.991 | 227 | 155 | 6 | 22 | 237 | 55 | 279 | 9.32e-16 | 77.0 |
MS.gene31289.t1 | MTR_1g106885 | 27.027 | 222 | 138 | 6 | 22 | 234 | 116 | 322 | 3.88e-15 | 75.9 |
MS.gene31289.t1 | MTR_5g077245 | 26.761 | 213 | 143 | 6 | 36 | 237 | 122 | 332 | 4.22e-15 | 75.5 |
MS.gene31289.t1 | MTR_2g022120 | 26.341 | 205 | 127 | 6 | 22 | 217 | 119 | 308 | 4.24e-15 | 75.5 |
MS.gene31289.t1 | MTR_7g062380 | 25.352 | 213 | 146 | 6 | 36 | 237 | 4 | 214 | 5.84e-15 | 73.9 |
MS.gene31289.t1 | MTR_2g072860 | 28.448 | 116 | 81 | 2 | 59 | 174 | 72 | 185 | 6.78e-15 | 74.3 |
MS.gene31289.t1 | MTR_7g461350 | 29.310 | 116 | 80 | 2 | 59 | 174 | 140 | 253 | 7.02e-15 | 74.7 |
MS.gene31289.t1 | MTR_6g016670 | 29.310 | 116 | 80 | 2 | 59 | 174 | 140 | 253 | 7.02e-15 | 74.7 |
MS.gene31289.t1 | MTR_3g464310 | 29.310 | 116 | 80 | 2 | 59 | 174 | 140 | 253 | 7.02e-15 | 74.7 |
MS.gene31289.t1 | MTR_7g083520 | 28.378 | 148 | 99 | 4 | 27 | 170 | 37 | 181 | 8.13e-15 | 73.9 |
MS.gene31289.t1 | MTR_3g464170 | 28.448 | 116 | 81 | 2 | 59 | 174 | 140 | 253 | 1.37e-14 | 73.9 |
MS.gene31289.t1 | MTR_1g100375 | 28.448 | 116 | 81 | 2 | 59 | 174 | 140 | 253 | 1.37e-14 | 73.9 |
MS.gene31289.t1 | MTR_6g051405 | 28.448 | 116 | 81 | 2 | 59 | 174 | 140 | 253 | 1.48e-14 | 73.9 |
MS.gene31289.t1 | MTR_3g450670 | 28.448 | 116 | 81 | 2 | 59 | 174 | 136 | 249 | 1.59e-14 | 73.9 |
MS.gene31289.t1 | MTR_1g471070 | 28.448 | 116 | 81 | 2 | 59 | 174 | 136 | 249 | 1.59e-14 | 73.9 |
MS.gene31289.t1 | MTR_6g092533 | 27.673 | 159 | 107 | 4 | 22 | 174 | 119 | 275 | 2.66e-14 | 73.2 |
MS.gene31289.t1 | MTR_5g044920 | 75.000 | 40 | 10 | 0 | 43 | 82 | 17 | 56 | 2.74e-13 | 65.1 |
MS.gene31289.t1 | MTR_1g086750 | 31.858 | 113 | 75 | 2 | 59 | 171 | 33 | 143 | 1.17e-12 | 66.6 |
MS.gene31289.t1 | MTR_4g046090 | 27.273 | 132 | 91 | 3 | 68 | 196 | 67 | 196 | 6.54e-12 | 65.1 |
MS.gene31289.t1 | MTR_6g069240 | 25.658 | 152 | 101 | 4 | 71 | 222 | 19 | 158 | 2.72e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31289.t1 | AT3G47680 | 37.619 | 210 | 119 | 6 | 30 | 232 | 23 | 227 | 3.53e-29 | 113 |
MS.gene31289.t1 | AT5G41220 | 40.884 | 181 | 90 | 7 | 56 | 222 | 219 | 396 | 6.42e-28 | 113 |
MS.gene31289.t1 | AT5G41220 | 40.884 | 181 | 90 | 7 | 56 | 222 | 227 | 404 | 7.83e-28 | 113 |
MS.gene31289.t1 | AT5G41220 | 40.884 | 181 | 90 | 7 | 56 | 222 | 277 | 454 | 8.07e-28 | 113 |
MS.gene31289.t1 | AT5G41240 | 37.297 | 185 | 102 | 6 | 51 | 222 | 272 | 455 | 2.42e-27 | 112 |
MS.gene31289.t1 | AT1G66235 | 25.346 | 217 | 139 | 5 | 56 | 256 | 11 | 220 | 2.15e-13 | 69.7 |
Find 60 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCGAGAGCGACATTATTT+TGG | 0.218289 | 2.4:-8033061 | MS.gene31289:CDS |
ATAAACCTTGATGAAGAAAT+TGG | 0.250877 | 2.4:-8033372 | MS.gene31289:CDS |
AGGAATTTCATGGCACTTAA+AGG | 0.293316 | 2.4:-8033168 | MS.gene31289:CDS |
TAATGAACCTGCACTCCATT+TGG | 0.310744 | 2.4:+8032960 | None:intergenic |
CCTTCTGTTAATAAGTTTGT+TGG | 0.320088 | 2.4:-8033123 | MS.gene31289:CDS |
GGAAAAGGGTTGAAGATGAT+AGG | 0.352254 | 2.4:-8032672 | MS.gene31289:CDS |
AATGAACCTGCACTCCATTT+GGG | 0.366609 | 2.4:+8032961 | None:intergenic |
TGATTTACAAATTCTCTTGA+AGG | 0.367301 | 2.4:-8032632 | MS.gene31289:CDS |
GCCGGATTATATTCGCTTGT+TGG | 0.397343 | 2.4:+8032868 | None:intergenic |
AAGCCGAGATAGAGAGGAAA+AGG | 0.406812 | 2.4:-8032687 | MS.gene31289:CDS |
CGGATCCAATTTCTTCATCA+AGG | 0.413303 | 2.4:+8033367 | None:intergenic |
ATTGTTGGGATTGATCAAAA+AGG | 0.426909 | 2.4:-8033255 | MS.gene31289:CDS |
TCGGTCAAAAGGCGGCTAAA+AGG | 0.428904 | 2.4:-8032834 | MS.gene31289:CDS |
TCATAATCGCGTAGTTGTCT+TGG | 0.431755 | 2.4:+8032592 | None:intergenic |
TGCATAATCACGTGCAAACT+CGG | 0.432397 | 2.4:+8032726 | None:intergenic |
ATGAGAAGTTCATCCTCGTT+TGG | 0.433365 | 2.4:+8033309 | None:intergenic |
TTTCAAAGGACTCGATTGTT+GGG | 0.442182 | 2.4:-8033269 | MS.gene31289:CDS |
AGAACAAAGAATTCAACTTC+CGG | 0.447947 | 2.4:-8032922 | MS.gene31289:CDS |
ATTTCAAAGGACTCGATTGT+TGG | 0.449581 | 2.4:-8033270 | MS.gene31289:CDS |
TTGTCCAGAGAGGAATTTCA+TGG | 0.464666 | 2.4:-8033178 | MS.gene31289:CDS |
ATCTTGTACTCAAGGTGGCT+TGG | 0.464998 | 2.4:-8033400 | MS.gene31289:CDS |
GAGGTTCAAATTGATAATAA+TGG | 0.466188 | 2.4:-8033459 | MS.gene31289:CDS |
TAATGAAGGATGAGCCCAAA+TGG | 0.470192 | 2.4:-8032975 | MS.gene31289:CDS |
TATTCGCTTGTTGGTGTTGG+TGG | 0.471434 | 2.4:+8032877 | None:intergenic |
ATGAACTTCTCATTCAATCA+TGG | 0.473430 | 2.4:-8033299 | MS.gene31289:CDS |
GCGTAGAAAATTCACATTTG+AGG | 0.485091 | 2.4:-8033010 | MS.gene31289:CDS |
GAAAAGGGTTGAAGATGATA+GGG | 0.487637 | 2.4:-8032671 | MS.gene31289:CDS |
TTATATTCGCTTGTTGGTGT+TGG | 0.496844 | 2.4:+8032874 | None:intergenic |
AATCCGGCGAAGCGTCCAAT+CGG | 0.499982 | 2.4:-8032853 | MS.gene31289:CDS |
TGACCGATTGGACGCTTCGC+CGG | 0.505561 | 2.4:+8032850 | None:intergenic |
AGTGCCATGAAATTCCTCTC+TGG | 0.513566 | 2.4:+8033174 | None:intergenic |
GAAGCGTCCAATCGGTCAAA+AGG | 0.517129 | 2.4:-8032845 | MS.gene31289:CDS |
ATCATGGTTCAACATTTCAA+AGG | 0.518437 | 2.4:-8033283 | MS.gene31289:CDS |
GGCGTAATTAGAGATAAATA+TGG | 0.527641 | 2.4:-8032559 | MS.gene31289:CDS |
GAAGTTCATCCTCGTTTGGT+TGG | 0.528033 | 2.4:+8033313 | None:intergenic |
TCATGGCACTTAAAGGCCGT+TGG | 0.528425 | 2.4:-8033161 | MS.gene31289:CDS |
GATGAGCCCAAATGGAGTGC+AGG | 0.546812 | 2.4:-8032967 | MS.gene31289:CDS |
ACCAACAAGCGAATATAATC+CGG | 0.551759 | 2.4:-8032869 | MS.gene31289:CDS |
GGTGTTGGTGGGTTAGAAGA+TGG | 0.553851 | 2.4:+8032889 | None:intergenic |
ATTCGCTTGTTGGTGTTGGT+GGG | 0.556256 | 2.4:+8032878 | None:intergenic |
CCAACAAACTTATTAACAGA+AGG | 0.558467 | 2.4:+8033123 | None:intergenic |
AGCCAAAATAATGTCGCTCT+CGG | 0.564239 | 2.4:+8033059 | None:intergenic |
GGATGCTACAAACAAGCCGT+TGG | 0.570988 | 2.4:-8033102 | MS.gene31289:CDS |
CGCGATTATGAATATTTGTG+TGG | 0.578026 | 2.4:-8032580 | MS.gene31289:CDS |
ACACCACAATCTTGTACTCA+AGG | 0.582202 | 2.4:-8033408 | MS.gene31289:CDS |
TCAAAAGGCGGCTAAAAGGA+AGG | 0.585709 | 2.4:-8032830 | MS.gene31289:CDS |
AGAAGATGGCGAATATGCTC+CGG | 0.586086 | 2.4:+8032903 | None:intergenic |
TCTCTGGACAATTCTTGTCG+CGG | 0.608642 | 2.4:+8033190 | None:intergenic |
AGCCGAGATAGAGAGGAAAA+GGG | 0.609069 | 2.4:-8032686 | MS.gene31289:CDS |
CCACCTTGAGTACAAGATTG+TGG | 0.623073 | 2.4:+8033405 | None:intergenic |
TGAAGAAATTGGATCCGCAT+CGG | 0.629641 | 2.4:-8033361 | MS.gene31289:CDS |
CGGTGTATTTACAGCCGATG+CGG | 0.630471 | 2.4:+8033347 | None:intergenic |
AATTCACATTTGAGGCTGCG+TGG | 0.634228 | 2.4:-8033002 | MS.gene31289:CDS |
GGCTGCGTGGAGATTAATGA+AGG | 0.645333 | 2.4:-8032989 | MS.gene31289:CDS |
AATAAGATTCCAACCAAACG+AGG | 0.646389 | 2.4:-8033322 | MS.gene31289:CDS |
GGGTTGAAGATGATAGGGAA+AGG | 0.648735 | 2.4:-8032666 | MS.gene31289:CDS |
TAACCCCATTATGTCTCATG+AGG | 0.648921 | 2.4:-8033478 | None:intergenic |
GCGTCCAATCGGTCAAAAGG+CGG | 0.659841 | 2.4:-8032842 | MS.gene31289:CDS |
CCACAATCTTGTACTCAAGG+TGG | 0.693015 | 2.4:-8033405 | MS.gene31289:CDS |
GCGACAAGAATTGTCCAGAG+AGG | 0.746257 | 2.4:-8033188 | MS.gene31289:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTCAAAGTATCAATTT+TGG | + | chr2.4:8033243-8033262 | None:intergenic | 15.0% |
! | ATAAACCTTGATGAAGAAAT+TGG | - | chr2.4:8032645-8032664 | MS.gene31289:CDS | 25.0% |
! | GAAGGAAAAAGAAAAACTTA+AGG | - | chr2.4:8033205-8033224 | MS.gene31289:CDS | 25.0% |
! | TGATTTACAAATTCTCTTGA+AGG | - | chr2.4:8033385-8033404 | MS.gene31289:CDS | 25.0% |
!! | ATCAAAAAGGAGATTGTTTT+TGG | - | chr2.4:8032775-8032794 | MS.gene31289:CDS | 25.0% |
!! | GAGGTTCAAATTGATAATAA+TGG | - | chr2.4:8032558-8032577 | MS.gene31289:CDS | 25.0% |
!!! | TTCTTTGTTCTTTTTGAAGA+AGG | + | chr2.4:8033086-8033105 | None:intergenic | 25.0% |
!!! | TTTGGTTGGAATCTTATTTT+CGG | + | chr2.4:8032693-8032712 | None:intergenic | 25.0% |
AGAACAAAGAATTCAACTTC+CGG | - | chr2.4:8033095-8033114 | MS.gene31289:CDS | 30.0% | |
ATCATGGTTCAACATTTCAA+AGG | - | chr2.4:8032734-8032753 | MS.gene31289:CDS | 30.0% | |
ATGAACTTCTCATTCAATCA+TGG | - | chr2.4:8032718-8032737 | MS.gene31289:CDS | 30.0% | |
ATTGTTGGGATTGATCAAAA+AGG | - | chr2.4:8032762-8032781 | MS.gene31289:CDS | 30.0% | |
CCAACAAACTTATTAACAGA+AGG | + | chr2.4:8032897-8032916 | None:intergenic | 30.0% | |
CCTTCTGTTAATAAGTTTGT+TGG | - | chr2.4:8032894-8032913 | MS.gene31289:CDS | 30.0% | |
GGCGTAATTAGAGATAAATA+TGG | - | chr2.4:8033458-8033477 | MS.gene31289:CDS | 30.0% | |
!!! | ACCACTTTTTTTCAAACCAA+CGG | + | chr2.4:8032934-8032953 | None:intergenic | 30.0% |
AATAAGATTCCAACCAAACG+AGG | - | chr2.4:8032695-8032714 | MS.gene31289:CDS | 35.0% | |
ACCAACAAGCGAATATAATC+CGG | - | chr2.4:8033148-8033167 | MS.gene31289:CDS | 35.0% | |
AGGAATTTCATGGCACTTAA+AGG | - | chr2.4:8032849-8032868 | MS.gene31289:CDS | 35.0% | |
ATTTCAAAGGACTCGATTGT+TGG | - | chr2.4:8032747-8032766 | MS.gene31289:CDS | 35.0% | |
CGCGATTATGAATATTTGTG+TGG | - | chr2.4:8033437-8033456 | MS.gene31289:CDS | 35.0% | |
GAAAAGGGTTGAAGATGATA+GGG | - | chr2.4:8033346-8033365 | MS.gene31289:CDS | 35.0% | |
GCGTAGAAAATTCACATTTG+AGG | - | chr2.4:8033007-8033026 | MS.gene31289:CDS | 35.0% | |
TTTCAAAGGACTCGATTGTT+GGG | - | chr2.4:8032748-8032767 | MS.gene31289:CDS | 35.0% | |
! | GATTGATCGTTTTATGCCAA+CGG | + | chr2.4:8032875-8032894 | None:intergenic | 35.0% |
! | TTATATTCGCTTGTTGGTGT+TGG | + | chr2.4:8033146-8033165 | None:intergenic | 35.0% |
!!! | AAGGAGATTGTTTTTGGAAG+AGG | - | chr2.4:8032781-8032800 | MS.gene31289:CDS | 35.0% |
AATGAACCTGCACTCCATTT+GGG | + | chr2.4:8033059-8033078 | None:intergenic | 40.0% | |
ACACCACAATCTTGTACTCA+AGG | - | chr2.4:8032609-8032628 | MS.gene31289:CDS | 40.0% | |
AGCCAAAATAATGTCGCTCT+CGG | + | chr2.4:8032961-8032980 | None:intergenic | 40.0% | |
ATGAGAAGTTCATCCTCGTT+TGG | + | chr2.4:8032711-8032730 | None:intergenic | 40.0% | |
CGGATCCAATTTCTTCATCA+AGG | + | chr2.4:8032653-8032672 | None:intergenic | 40.0% | |
GGAAAAGGGTTGAAGATGAT+AGG | - | chr2.4:8033345-8033364 | MS.gene31289:CDS | 40.0% | |
TAATGAACCTGCACTCCATT+TGG | + | chr2.4:8033060-8033079 | None:intergenic | 40.0% | |
TAATGAAGGATGAGCCCAAA+TGG | - | chr2.4:8033042-8033061 | MS.gene31289:CDS | 40.0% | |
TCATAATCGCGTAGTTGTCT+TGG | + | chr2.4:8033428-8033447 | None:intergenic | 40.0% | |
TGAAGAAATTGGATCCGCAT+CGG | - | chr2.4:8032656-8032675 | MS.gene31289:CDS | 40.0% | |
TGCATAATCACGTGCAAACT+CGG | + | chr2.4:8033294-8033313 | None:intergenic | 40.0% | |
TTGTCCAGAGAGGAATTTCA+TGG | - | chr2.4:8032839-8032858 | MS.gene31289:CDS | 40.0% | |
! | AACCCTTTTCCTCTCTATCT+CGG | + | chr2.4:8033336-8033355 | None:intergenic | 40.0% |
! | TGAATTTTCTACGCATGTCG+TGG | + | chr2.4:8033001-8033020 | None:intergenic | 40.0% |
!! | GCCGTTGGTTTGAAAAAAAG+TGG | - | chr2.4:8032930-8032949 | MS.gene31289:CDS | 40.0% |
AAGCCGAGATAGAGAGGAAA+AGG | - | chr2.4:8033330-8033349 | MS.gene31289:CDS | 45.0% | |
AGAAGATGGCGAATATGCTC+CGG | + | chr2.4:8033117-8033136 | None:intergenic | 45.0% | |
AGCCGAGATAGAGAGGAAAA+GGG | - | chr2.4:8033331-8033350 | MS.gene31289:CDS | 45.0% | |
AGTGCCATGAAATTCCTCTC+TGG | + | chr2.4:8032846-8032865 | None:intergenic | 45.0% | |
ATCTTGTACTCAAGGTGGCT+TGG | - | chr2.4:8032617-8032636 | MS.gene31289:CDS | 45.0% | |
CCACAATCTTGTACTCAAGG+TGG | - | chr2.4:8032612-8032631 | MS.gene31289:CDS | 45.0% | |
CCACCTTGAGTACAAGATTG+TGG | + | chr2.4:8032615-8032634 | None:intergenic | 45.0% | |
GAAGTTCATCCTCGTTTGGT+TGG | + | chr2.4:8032707-8032726 | None:intergenic | 45.0% | |
GCCGGATTATATTCGCTTGT+TGG | + | chr2.4:8033152-8033171 | None:intergenic | 45.0% | |
GGGTTGAAGATGATAGGGAA+AGG | - | chr2.4:8033351-8033370 | MS.gene31289:CDS | 45.0% | |
GTGAAAAAGCCGAGATAGAG+AGG | - | chr2.4:8033324-8033343 | MS.gene31289:CDS | 45.0% | |
TCAAAAGGCGGCTAAAAGGA+AGG | - | chr2.4:8033187-8033206 | MS.gene31289:CDS | 45.0% | |
TCTCTGGACAATTCTTGTCG+CGG | + | chr2.4:8032830-8032849 | None:intergenic | 45.0% | |
! | AATTCACATTTGAGGCTGCG+TGG | - | chr2.4:8033015-8033034 | MS.gene31289:CDS | 45.0% |
! | CTCCGAGAGCGACATTATTT+TGG | - | chr2.4:8032956-8032975 | MS.gene31289:CDS | 45.0% |
!! | ATTCGCTTGTTGGTGTTGGT+GGG | + | chr2.4:8033142-8033161 | None:intergenic | 45.0% |
!! | TATTCGCTTGTTGGTGTTGG+TGG | + | chr2.4:8033143-8033162 | None:intergenic | 45.0% |
CGGTGTATTTACAGCCGATG+CGG | + | chr2.4:8032673-8032692 | None:intergenic | 50.0% | |
GCGACAAGAATTGTCCAGAG+AGG | - | chr2.4:8032829-8032848 | MS.gene31289:CDS | 50.0% | |
GGATGCTACAAACAAGCCGT+TGG | - | chr2.4:8032915-8032934 | MS.gene31289:CDS | 50.0% | |
GGCTGCGTGGAGATTAATGA+AGG | - | chr2.4:8033028-8033047 | MS.gene31289:CDS | 50.0% | |
TCATGGCACTTAAAGGCCGT+TGG | - | chr2.4:8032856-8032875 | MS.gene31289:CDS | 50.0% | |
TCGGTCAAAAGGCGGCTAAA+AGG | - | chr2.4:8033183-8033202 | MS.gene31289:CDS | 50.0% | |
! | GAAGCGTCCAATCGGTCAAA+AGG | - | chr2.4:8033172-8033191 | MS.gene31289:CDS | 50.0% |
! | TTAGCCGCCTTTTGACCGAT+TGG | + | chr2.4:8033182-8033201 | None:intergenic | 50.0% |
!! | GGTGTTGGTGGGTTAGAAGA+TGG | + | chr2.4:8033131-8033150 | None:intergenic | 50.0% |
GATGAGCCCAAATGGAGTGC+AGG | - | chr2.4:8033050-8033069 | MS.gene31289:CDS | 55.0% | |
GCGTCCAATCGGTCAAAAGG+CGG | - | chr2.4:8033175-8033194 | MS.gene31289:CDS | 55.0% | |
! | AATCCGGCGAAGCGTCCAAT+CGG | - | chr2.4:8033164-8033183 | MS.gene31289:CDS | 55.0% |
TGACCGATTGGACGCTTCGC+CGG | + | chr2.4:8033170-8033189 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 8032549 | 8033490 | 8032549 | ID=MS.gene31289 |
chr2.4 | mRNA | 8032549 | 8033490 | 8032549 | ID=MS.gene31289.t1;Parent=MS.gene31289 |
chr2.4 | exon | 8032549 | 8033490 | 8032549 | ID=MS.gene31289.t1.exon1;Parent=MS.gene31289.t1 |
chr2.4 | CDS | 8032549 | 8033490 | 8032549 | ID=cds.MS.gene31289.t1;Parent=MS.gene31289.t1 |
Gene Sequence |
Protein sequence |