Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31808.t1 | GAU27498.1 | 97.3 | 188 | 3 | 1 | 1 | 186 | 1 | 188 | 3.40E-99 | 370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31808.t1 | Q9FGM1 | 78.0 | 182 | 38 | 1 | 2 | 181 | 4 | 185 | 5.7e-79 | 295.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31808.t1 | A0A2Z6M7P1 | 97.3 | 188 | 3 | 1 | 1 | 186 | 1 | 188 | 2.4e-99 | 370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79764 | MS.gene31808 | PPI |
| MS.gene86009 | MS.gene31808 | PPI |
| MS.gene59569 | MS.gene31808 | PPI |
| MS.gene95282 | MS.gene31808 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31808.t1 | MTR_1g028380 | 95.789 | 190 | 4 | 1 | 1 | 186 | 1 | 190 | 2.15e-134 | 374 |
| MS.gene31808.t1 | MTR_3g090980 | 87.302 | 189 | 21 | 1 | 1 | 186 | 4 | 192 | 1.47e-122 | 344 |
| MS.gene31808.t1 | MTR_8g027805 | 74.302 | 179 | 46 | 0 | 6 | 184 | 9 | 187 | 3.59e-102 | 292 |
| MS.gene31808.t1 | MTR_3g071740 | 51.163 | 172 | 79 | 4 | 12 | 181 | 63 | 231 | 2.72e-58 | 182 |
| MS.gene31808.t1 | MTR_7g070050 | 56.805 | 169 | 67 | 3 | 13 | 175 | 11 | 179 | 1.73e-56 | 176 |
| MS.gene31808.t1 | MTR_5g083270 | 52.121 | 165 | 73 | 3 | 13 | 174 | 44 | 205 | 3.26e-56 | 176 |
| MS.gene31808.t1 | MTR_4g014460 | 49.068 | 161 | 81 | 1 | 15 | 174 | 49 | 209 | 1.10e-53 | 170 |
| MS.gene31808.t1 | MTR_1g016480 | 49.367 | 158 | 79 | 1 | 15 | 171 | 39 | 196 | 3.05e-52 | 166 |
| MS.gene31808.t1 | MTR_5g030500 | 49.398 | 166 | 77 | 3 | 14 | 173 | 43 | 207 | 3.62e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31808.t1 | AT5G53160 | 78.022 | 182 | 38 | 1 | 2 | 181 | 4 | 185 | 9.03e-105 | 299 |
| MS.gene31808.t1 | AT1G01360 | 72.928 | 181 | 48 | 1 | 2 | 181 | 7 | 187 | 9.05e-97 | 278 |
| MS.gene31808.t1 | AT4G27920 | 66.848 | 184 | 59 | 2 | 1 | 183 | 1 | 183 | 2.07e-90 | 262 |
| MS.gene31808.t1 | AT4G01026 | 71.345 | 171 | 49 | 0 | 13 | 183 | 21 | 191 | 4.80e-88 | 257 |
| MS.gene31808.t1 | AT5G53160 | 75.439 | 114 | 26 | 1 | 2 | 113 | 4 | 117 | 4.73e-59 | 182 |
| MS.gene31808.t1 | AT2G38310 | 53.293 | 167 | 73 | 2 | 17 | 181 | 41 | 204 | 1.64e-54 | 172 |
| MS.gene31808.t1 | AT2G40330 | 48.503 | 167 | 82 | 2 | 13 | 175 | 46 | 212 | 1.52e-53 | 170 |
| MS.gene31808.t1 | AT5G05440 | 51.899 | 158 | 71 | 3 | 13 | 168 | 43 | 197 | 1.94e-53 | 169 |
| MS.gene31808.t1 | AT2G26040 | 47.619 | 168 | 83 | 3 | 15 | 178 | 22 | 188 | 1.11e-51 | 164 |
| MS.gene31808.t1 | AT4G17870 | 49.693 | 163 | 80 | 1 | 15 | 175 | 17 | 179 | 2.51e-49 | 158 |
| MS.gene31808.t1 | AT1G73000 | 41.573 | 178 | 92 | 3 | 7 | 173 | 30 | 206 | 3.12e-44 | 146 |
| MS.gene31808.t1 | AT5G45870 | 50.676 | 148 | 70 | 2 | 28 | 174 | 10 | 155 | 8.23e-40 | 133 |
| MS.gene31808.t1 | AT5G46790 | 47.273 | 165 | 82 | 2 | 15 | 174 | 44 | 208 | 1.13e-39 | 135 |
| MS.gene31808.t1 | AT5G46790 | 47.273 | 165 | 82 | 2 | 15 | 174 | 44 | 208 | 1.13e-39 | 135 |
| MS.gene31808.t1 | AT5G45860 | 49.091 | 165 | 75 | 3 | 12 | 175 | 1 | 157 | 2.45e-39 | 132 |
| MS.gene31808.t1 | AT4G18620 | 42.857 | 161 | 85 | 1 | 21 | 174 | 2 | 162 | 2.17e-35 | 122 |
Find 49 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 1.1:+14095827 | MS.gene31808:intron |
| GGCCTTCCATCAATAATTTC+CGG | 0.275346 | 1.1:-14096240 | None:intergenic |
| AATTGGAAGGTTTAGTAATA+TGG | 0.277883 | 1.1:+14094644 | MS.gene31808:CDS |
| GTTCTCAGCATCAGGATTAT+TGG | 0.292453 | 1.1:+14096011 | MS.gene31808:CDS |
| GCCTTCCATCAATAATTTCC+GGG | 0.374087 | 1.1:-14096239 | None:intergenic |
| CTCGTCTTTGGTGTTCCCCT+CGG | 0.382151 | 1.1:-14096301 | None:intergenic |
| CTCCACCCGGAAATTATTGA+TGG | 0.418097 | 1.1:+14096234 | MS.gene31808:CDS |
| ATCTCCTATACCCGATCAAT+TGG | 0.422489 | 1.1:-14096414 | None:intergenic |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.432752 | 1.1:+14095933 | MS.gene31808:CDS |
| CGAACCAATTGATCGGGTAT+AGG | 0.433926 | 1.1:+14096410 | MS.gene31808:CDS |
| TTGTAAGCAGATGTGTTGTA+AGG | 0.437036 | 1.1:+14095886 | MS.gene31808:CDS |
| TCGTCTTTGGTGTTCCCCTC+GGG | 0.441469 | 1.1:-14096300 | None:intergenic |
| GAAGTAGCAAGTCTCGTCTT+TGG | 0.441478 | 1.1:-14096313 | None:intergenic |
| GTAAGGGGAAACCTTGAGAT+TGG | 0.444712 | 1.1:+14095903 | MS.gene31808:CDS |
| ACAACACATCTGCTTACAAA+TGG | 0.446274 | 1.1:-14095882 | None:intergenic |
| ATGAGCATGTTCTCAGCATC+AGG | 0.451170 | 1.1:+14096003 | MS.gene31808:CDS |
| TATTAGAGCACCGGTTCCTC+AGG | 0.468954 | 1.1:+14094740 | MS.gene31808:CDS |
| CTTTCTGTACTTGTAGTAGC+AGG | 0.476962 | 1.1:-14095960 | None:intergenic |
| TACTACAAGTACAGAAAGAT+TGG | 0.478896 | 1.1:+14095965 | MS.gene31808:CDS |
| TTTGAGATTGCACTTGATAA+CGG | 0.486760 | 1.1:-14096343 | None:intergenic |
| CTCTTAGACTTCCAATCTCA+AGG | 0.494760 | 1.1:-14095914 | None:intergenic |
| GAAATTATTGATGGAAGGCC+AGG | 0.495805 | 1.1:+14096243 | MS.gene31808:CDS |
| AGACATCACCGGCAGCAGCC+TGG | 0.503570 | 1.1:+14094684 | MS.gene31808:CDS |
| AGAAGGGCAACCTGAGGAAC+CGG | 0.506005 | 1.1:-14094750 | None:intergenic |
| CTATACCCGATCAATTGGTT+CGG | 0.507097 | 1.1:-14096409 | None:intergenic |
| TGGTGGTGATCATCGACTTA+CGG | 0.507996 | 1.1:+14096031 | MS.gene31808:CDS |
| AGCTAATCCTTCTGAGACAT+CGG | 0.524880 | 1.1:-14096373 | None:intergenic |
| GATTATGTCCAGGCTGCTGC+CGG | 0.530762 | 1.1:-14094692 | None:intergenic |
| AAGGTTTAGTAATATGGAGA+TGG | 0.538000 | 1.1:+14094650 | MS.gene31808:CDS |
| TGTTAAGCATATTAGAGCAC+CGG | 0.544425 | 1.1:+14094731 | MS.gene31808:CDS |
| CCGCACCGAACCAATTGATC+GGG | 0.544970 | 1.1:+14096404 | MS.gene31808:CDS |
| ACAAATGGTTTGTACTTCTG+CGG | 0.546489 | 1.1:-14095867 | None:intergenic |
| CTCAGCATCAGGATTATTGG+TGG | 0.555236 | 1.1:+14096014 | MS.gene31808:CDS |
| TGTAAGCAGATGTGTTGTAA+GGG | 0.557883 | 1.1:+14095887 | MS.gene31808:CDS |
| GATTCAATTACTAGTGTACC+TGG | 0.559523 | 1.1:-14096261 | None:intergenic |
| CATCTTTCAGAACTATTCGT+CGG | 0.565624 | 1.1:+14096203 | MS.gene31808:intron |
| ACCGCACCGAACCAATTGAT+CGG | 0.567055 | 1.1:+14096403 | MS.gene31808:CDS |
| GTAAGCAGATGTGTTGTAAG+GGG | 0.581576 | 1.1:+14095888 | MS.gene31808:CDS |
| AGGTATGGTCTTTGGTACGA+AGG | 0.585487 | 1.1:+14095835 | MS.gene31808:intron |
| GTCGGTGATGTCTCTCCACC+CGG | 0.585512 | 1.1:+14096221 | MS.gene31808:CDS |
| TCACTTGCCGATGTCTCAGA+AGG | 0.585800 | 1.1:+14096366 | MS.gene31808:CDS |
| GAAGCACACTGATTATGTCC+AGG | 0.586081 | 1.1:-14094702 | None:intergenic |
| ACCCGGAAATTATTGATGGA+AGG | 0.600623 | 1.1:+14096238 | MS.gene31808:CDS |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.613345 | 1.1:+14095934 | MS.gene31808:CDS |
| AATATATAAGAAGACATCAC+CGG | 0.628118 | 1.1:+14094673 | MS.gene31808:CDS |
| TTTGTGGTGGATATACCCGA+GGG | 0.646946 | 1.1:+14096285 | MS.gene31808:CDS |
| CCCGATCAATTGGTTCGGTG+CGG | 0.657648 | 1.1:-14096404 | None:intergenic |
| TTCCATCAATAATTTCCGGG+TGG | 0.680403 | 1.1:-14096236 | None:intergenic |
| TTGTGGTGGATATACCCGAG+GGG | 0.768021 | 1.1:+14096286 | MS.gene31808:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTTTATTTTA+TGG | + | chr1.1:14094803-14094822 | MS.gene31808:intron | 0.0% |
| !! | AAAAGAACAAAATATAGTTA+TGG | + | chr1.1:14094969-14094988 | MS.gene31808:intron | 15.0% |
| !! | TCTTAAAAAAACACTATTTA+AGG | - | chr1.1:14094947-14094966 | None:intergenic | 15.0% |
| !! | AAAAACAAAAGAAAGAAAGA+AGG | - | chr1.1:14094770-14094789 | None:intergenic | 20.0% |
| !! | AAAACAAAAGAAAGAAAGAA+GGG | - | chr1.1:14094769-14094788 | None:intergenic | 20.0% |
| !! | CATTATACAAAAATATTGTC+AGG | - | chr1.1:14095765-14095784 | None:intergenic | 20.0% |
| !! | TAATTGGTATGAAATTTACT+AGG | - | chr1.1:14095567-14095586 | None:intergenic | 20.0% |
| !! | TGTTGAGAAAATTAATTGTT+GGG | + | chr1.1:14095473-14095492 | MS.gene31808:intron | 20.0% |
| !! | TTACTAGGATTATAATGAAT+AGG | - | chr1.1:14095552-14095571 | None:intergenic | 20.0% |
| !! | TTGTTGAGAAAATTAATTGT+TGG | + | chr1.1:14095472-14095491 | MS.gene31808:intron | 20.0% |
| !!! | AAATGTTTTGATGTTGTTTT+TGG | + | chr1.1:14095239-14095258 | MS.gene31808:intron | 20.0% |
| !!! | ACAATTAATTTTCTCAACAA+CGG | - | chr1.1:14095472-14095491 | None:intergenic | 20.0% |
| !!! | TTGCTTTATTACTCTTTAAA+GGG | + | chr1.1:14095501-14095520 | MS.gene31808:intron | 20.0% |
| !!! | TTTTTAAAGAAGAATCGATT+CGG | - | chr1.1:14096150-14096169 | None:intergenic | 20.0% |
| ! | AATATATAAGAAGACATCAC+CGG | + | chr1.1:14094673-14094692 | MS.gene31808:CDS | 25.0% |
| ! | AATTGGAAGGTTTAGTAATA+TGG | + | chr1.1:14094644-14094663 | MS.gene31808:CDS | 25.0% |
| ! | AGAATAAGAAAAGCAGTAAT+TGG | - | chr1.1:14095583-14095602 | None:intergenic | 25.0% |
| ! | AGCAAACATAAGTAAATTAG+AGG | - | chr1.1:14096104-14096123 | None:intergenic | 25.0% |
| ! | TGGTTATGCAAATGTTAAAA+CGG | + | chr1.1:14094989-14095008 | MS.gene31808:intron | 25.0% |
| ! | TTGTGTTAGATATTCAGTTA+TGG | + | chr1.1:14094887-14094906 | MS.gene31808:intron | 25.0% |
| !! | ACTAGTAATTGAATCTTTTG+TGG | + | chr1.1:14096269-14096288 | MS.gene31808:CDS | 25.0% |
| !! | CTTGCTTTATTACTCTTTAA+AGG | + | chr1.1:14095500-14095519 | MS.gene31808:intron | 25.0% |
| !!! | ATGGTTTTGTTGAATTGAAT+CGG | + | chr1.1:14094822-14094841 | MS.gene31808:intron | 25.0% |
| !!! | GTTGTTTTTGGTCTATTTTA+TGG | + | chr1.1:14095251-14095270 | MS.gene31808:intron | 25.0% |
| !!! | TGCTACTATATTTTAGGTTT+AGG | + | chr1.1:14095307-14095326 | MS.gene31808:intron | 25.0% |
| AAATAAACATCACACAACGA+GGG | - | chr1.1:14095791-14095810 | None:intergenic | 30.0% | |
| AAGGTTTAGTAATATGGAGA+TGG | + | chr1.1:14094650-14094669 | MS.gene31808:CDS | 30.0% | |
| AGAAAAATCGAACTGAATTG+AGG | - | chr1.1:14095699-14095718 | None:intergenic | 30.0% | |
| AGATATTCAGTTATGGTTGT+TGG | + | chr1.1:14094894-14094913 | MS.gene31808:intron | 30.0% | |
| ATTATCTGCTTTACCTCTAA+AGG | - | chr1.1:14095444-14095463 | None:intergenic | 30.0% | |
| CTTATTCTATTTCATCAGCT+TGG | + | chr1.1:14095595-14095614 | MS.gene31808:intron | 30.0% | |
| GTTTGTGTTAAGAAGAACTT+AGG | + | chr1.1:14095338-14095357 | MS.gene31808:intron | 30.0% | |
| TAAATAAACATCACACAACG+AGG | - | chr1.1:14095792-14095811 | None:intergenic | 30.0% | |
| TACTACAAGTACAGAAAGAT+TGG | + | chr1.1:14095965-14095984 | MS.gene31808:CDS | 30.0% | |
| TAGAGGAACAAAAAAGTTTC+TGG | - | chr1.1:14096087-14096106 | None:intergenic | 30.0% | |
| TCCTTAAAATGACAACTCTT+TGG | + | chr1.1:14096178-14096197 | MS.gene31808:intron | 30.0% | |
| TTCAATCTGATATGAAGTGT+CGG | + | chr1.1:14095184-14095203 | MS.gene31808:intron | 30.0% | |
| ! | AGTAATTGAATCTTTTGTGG+TGG | + | chr1.1:14096272-14096291 | MS.gene31808:CDS | 30.0% |
| ! | CTGATCTGCTACTATATTTT+AGG | + | chr1.1:14095301-14095320 | MS.gene31808:intron | 30.0% |
| ! | TTTGAGATTGCACTTGATAA+CGG | - | chr1.1:14096346-14096365 | None:intergenic | 30.0% |
| !! | TAAAACGGTTAGCTGATTTT+TGG | + | chr1.1:14095004-14095023 | MS.gene31808:intron | 30.0% |
| !! | TGTGTGAAGATTTTTGTTGT+TGG | + | chr1.1:14094845-14094864 | MS.gene31808:intron | 30.0% |
| !!! | AAGTTTCTGGTCATTTTGTA+AGG | - | chr1.1:14096074-14096093 | None:intergenic | 30.0% |
| !!! | ACCAAAGAGTTGTCATTTTA+AGG | - | chr1.1:14096182-14096201 | None:intergenic | 30.0% |
| ACAACACATCTGCTTACAAA+TGG | - | chr1.1:14095885-14095904 | None:intergenic | 35.0% | |
| ATCACATTGTATCACAAAGC+AGG | - | chr1.1:14095281-14095300 | None:intergenic | 35.0% | |
| ATTGAGGTTCGCTTTGTAAT+TGG | - | chr1.1:14095683-14095702 | None:intergenic | 35.0% | |
| CATCTTTCAGAACTATTCGT+CGG | + | chr1.1:14096203-14096222 | MS.gene31808:intron | 35.0% | |
| GATTCAATTACTAGTGTACC+TGG | - | chr1.1:14096264-14096283 | None:intergenic | 35.0% | |
| TATCAGATTGAAGACATGTC+TGG | - | chr1.1:14095176-14095195 | None:intergenic | 35.0% | |
| TCTATTTCATCAGCTTGGTT+TGG | + | chr1.1:14095600-14095619 | MS.gene31808:intron | 35.0% | |
| TGTAAGCAGATGTGTTGTAA+GGG | + | chr1.1:14095887-14095906 | MS.gene31808:CDS | 35.0% | |
| TGTGTTAAGAAGAACTTAGG+AGG | + | chr1.1:14095341-14095360 | MS.gene31808:intron | 35.0% | |
| TGTTAAGCATATTAGAGCAC+CGG | + | chr1.1:14094731-14094750 | MS.gene31808:CDS | 35.0% | |
| TTGTAAGCAGATGTGTTGTA+AGG | + | chr1.1:14095886-14095905 | MS.gene31808:CDS | 35.0% | |
| ! | ACAAATGGTTTGTACTTCTG+CGG | - | chr1.1:14095870-14095889 | None:intergenic | 35.0% |
| ! | AGATTTGCTTTCTCTAGGTA+TGG | + | chr1.1:14095820-14095839 | MS.gene31808:intron | 35.0% |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | + | chr1.1:14095933-14095952 | MS.gene31808:CDS | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | + | chr1.1:14095934-14095953 | MS.gene31808:CDS | 35.0% |
| !!! | GATTTTTGTTGTTGGATGCA+TGG | + | chr1.1:14094853-14094872 | MS.gene31808:intron | 35.0% |
| AAGCGAGCAATTTCCTTTAG+AGG | + | chr1.1:14095428-14095447 | MS.gene31808:intron | 40.0% | |
| ACCCGGAAATTATTGATGGA+AGG | + | chr1.1:14096238-14096257 | MS.gene31808:CDS | 40.0% | |
| AGAAACAAAGACATCAGACG+CGG | + | chr1.1:14095037-14095056 | MS.gene31808:intron | 40.0% | |
| CAGTTATGGTTGTTGGAACT+TGG | + | chr1.1:14094901-14094920 | MS.gene31808:intron | 40.0% | |
| CTATACCCGATCAATTGGTT+CGG | - | chr1.1:14096412-14096431 | None:intergenic | 40.0% | |
| CTCTTAGACTTCCAATCTCA+AGG | - | chr1.1:14095917-14095936 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | + | chr1.1:14095827-14095846 | MS.gene31808:intron | 40.0% | |
| CTTTCTGTACTTGTAGTAGC+AGG | - | chr1.1:14095963-14095982 | None:intergenic | 40.0% | |
| GAAATTATTGATGGAAGGCC+AGG | + | chr1.1:14096243-14096262 | MS.gene31808:CDS | 40.0% | |
| GCCTTCCATCAATAATTTCC+GGG | - | chr1.1:14096242-14096261 | None:intergenic | 40.0% | |
| GGCCTTCCATCAATAATTTC+CGG | - | chr1.1:14096243-14096262 | None:intergenic | 40.0% | |
| GTAAGCAGATGTGTTGTAAG+GGG | + | chr1.1:14095888-14095907 | MS.gene31808:CDS | 40.0% | |
| GTTCTCAGCATCAGGATTAT+TGG | + | chr1.1:14096011-14096030 | MS.gene31808:CDS | 40.0% | |
| TGTTGTTGGATGCATGGTTA+TGG | + | chr1.1:14094859-14094878 | MS.gene31808:intron | 40.0% | |
| TTCCATCAATAATTTCCGGG+TGG | - | chr1.1:14096239-14096258 | None:intergenic | 40.0% | |
| TTGAAGACATGTCTGGTATC+CGG | - | chr1.1:14095169-14095188 | None:intergenic | 40.0% | |
| ! | CGCATAGATTTGCTTTCTCT+AGG | + | chr1.1:14095815-14095834 | MS.gene31808:intron | 40.0% |
| !! | AGCTAATCCTTCTGAGACAT+CGG | - | chr1.1:14096376-14096395 | None:intergenic | 40.0% |
| !! | ATGAAGTGTCGGTGTTGTAT+AGG | + | chr1.1:14095195-14095214 | MS.gene31808:intron | 40.0% |
| AAAGAAAGAAGGGCAACCTG+AGG | - | chr1.1:14094759-14094778 | None:intergenic | 45.0% | |
| AGGTATGGTCTTTGGTACGA+AGG | + | chr1.1:14095835-14095854 | MS.gene31808:intron | 45.0% | |
| ATGAGCATGTTCTCAGCATC+AGG | + | chr1.1:14096003-14096022 | MS.gene31808:CDS | 45.0% | |
| CTCAGCATCAGGATTATTGG+TGG | + | chr1.1:14096014-14096033 | MS.gene31808:CDS | 45.0% | |
| CTCCACCCGGAAATTATTGA+TGG | + | chr1.1:14096234-14096253 | MS.gene31808:CDS | 45.0% | |
| GAAGTAGCAAGTCTCGTCTT+TGG | - | chr1.1:14096316-14096335 | None:intergenic | 45.0% | |
| GTAAGGGGAAACCTTGAGAT+TGG | + | chr1.1:14095903-14095922 | MS.gene31808:CDS | 45.0% | |
| TGTTTGACACCAACACATGC+CGG | + | chr1.1:14095147-14095166 | MS.gene31808:intron | 45.0% | |
| ! | GAAGCACACTGATTATGTCC+AGG | - | chr1.1:14094705-14094724 | None:intergenic | 45.0% |
| !! | TGGTGGTGATCATCGACTTA+CGG | + | chr1.1:14096031-14096050 | MS.gene31808:CDS | 45.0% |
| !! | TTTGTGGTGGATATACCCGA+GGG | + | chr1.1:14096285-14096304 | MS.gene31808:CDS | 45.0% |
| !!! | TTTTGTGGTGGATATACCCG+AGG | + | chr1.1:14096284-14096303 | MS.gene31808:CDS | 45.0% |
| ACCGCACCGAACCAATTGAT+CGG | + | chr1.1:14096403-14096422 | MS.gene31808:CDS | 50.0% | |
| GATCCTTGTGAAGCGTAGCT+TGG | + | chr1.1:14095385-14095404 | MS.gene31808:intron | 50.0% | |
| TCACTTGCCGATGTCTCAGA+AGG | + | chr1.1:14096366-14096385 | MS.gene31808:CDS | 50.0% | |
| TGACCAAGCTACGCTTCACA+AGG | - | chr1.1:14095391-14095410 | None:intergenic | 50.0% | |
| !! | TATTAGAGCACCGGTTCCTC+AGG | + | chr1.1:14094740-14094759 | MS.gene31808:CDS | 50.0% |
| !! | TTGTGGTGGATATACCCGAG+GGG | + | chr1.1:14096286-14096305 | MS.gene31808:CDS | 50.0% |
| AGAAGGGCAACCTGAGGAAC+CGG | - | chr1.1:14094753-14094772 | None:intergenic | 55.0% | |
| CACAAGACACTGCGTGACAC+AGG | + | chr1.1:14095060-14095079 | MS.gene31808:intron | 55.0% | |
| CCGCACCGAACCAATTGATC+GGG | + | chr1.1:14096404-14096423 | MS.gene31808:CDS | 55.0% | |
| GATTATGTCCAGGCTGCTGC+CGG | - | chr1.1:14094695-14094714 | None:intergenic | 55.0% | |
| GTCTGGTATCCGGCATGTGT+TGG | - | chr1.1:14095159-14095178 | None:intergenic | 55.0% | |
| !! | CCCGATCAATTGGTTCGGTG+CGG | - | chr1.1:14096407-14096426 | None:intergenic | 55.0% |
| !! | CTCGTCTTTGGTGTTCCCCT+CGG | - | chr1.1:14096304-14096323 | None:intergenic | 55.0% |
| !! | TCGTCTTTGGTGTTCCCCTC+GGG | - | chr1.1:14096303-14096322 | None:intergenic | 55.0% |
| GTCGGTGATGTCTCTCCACC+CGG | + | chr1.1:14096221-14096240 | MS.gene31808:CDS | 60.0% | |
| AGACATCACCGGCAGCAGCC+TGG | + | chr1.1:14094684-14094703 | MS.gene31808:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14094636 | 14096431 | 14094636 | ID=MS.gene31808 |
| chr1.1 | mRNA | 14094636 | 14096431 | 14094636 | ID=MS.gene31808.t1;Parent=MS.gene31808 |
| chr1.1 | exon | 14094636 | 14094761 | 14094636 | ID=MS.gene31808.t1.exon1;Parent=MS.gene31808.t1 |
| chr1.1 | CDS | 14094636 | 14094761 | 14094636 | ID=cds.MS.gene31808.t1;Parent=MS.gene31808.t1 |
| chr1.1 | exon | 14095837 | 14096052 | 14095837 | ID=MS.gene31808.t1.exon2;Parent=MS.gene31808.t1 |
| chr1.1 | CDS | 14095837 | 14096052 | 14095837 | ID=cds.MS.gene31808.t1;Parent=MS.gene31808.t1 |
| chr1.1 | exon | 14096213 | 14096431 | 14096213 | ID=MS.gene31808.t1.exon3;Parent=MS.gene31808.t1 |
| chr1.1 | CDS | 14096213 | 14096431 | 14096213 | ID=cds.MS.gene31808.t1;Parent=MS.gene31808.t1 |
| Gene Sequence |
| Protein sequence |
