Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32355.t1 | XP_013466364.1 | 96.3 | 190 | 3 | 1 | 1 | 186 | 1 | 190 | 5.80E-99 | 370.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32355.t1 | Q9FGM1 | 77.5 | 182 | 39 | 1 | 2 | 181 | 4 | 185 | 9.7e-79 | 294.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32355.t1 | A0A072VQL7 | 96.3 | 190 | 3 | 1 | 1 | 186 | 1 | 190 | 4.2e-99 | 370.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32355 | MS.gene59569 | PPI |
| MS.gene79764 | MS.gene32355 | PPI |
| MS.gene32355 | MS.gene95282 | PPI |
| MS.gene32355 | MS.gene86009 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32355.t1 | MTR_1g028380 | 96.316 | 190 | 3 | 1 | 1 | 186 | 1 | 190 | 9.03e-135 | 375 |
| MS.gene32355.t1 | MTR_3g090980 | 87.302 | 189 | 21 | 1 | 1 | 186 | 4 | 192 | 2.00e-122 | 343 |
| MS.gene32355.t1 | MTR_8g027805 | 74.302 | 179 | 46 | 0 | 6 | 184 | 9 | 187 | 7.24e-102 | 291 |
| MS.gene32355.t1 | MTR_3g071740 | 51.163 | 172 | 79 | 4 | 12 | 181 | 63 | 231 | 2.91e-58 | 182 |
| MS.gene32355.t1 | MTR_7g070050 | 56.213 | 169 | 68 | 3 | 13 | 175 | 11 | 179 | 4.29e-56 | 175 |
| MS.gene32355.t1 | MTR_5g083270 | 51.515 | 165 | 74 | 3 | 13 | 174 | 44 | 205 | 9.70e-56 | 175 |
| MS.gene32355.t1 | MTR_4g014460 | 49.689 | 161 | 80 | 1 | 15 | 174 | 49 | 209 | 5.10e-54 | 171 |
| MS.gene32355.t1 | MTR_1g016480 | 49.367 | 158 | 79 | 1 | 15 | 171 | 39 | 196 | 3.59e-52 | 166 |
| MS.gene32355.t1 | MTR_5g030500 | 49.398 | 166 | 77 | 3 | 14 | 173 | 43 | 207 | 3.32e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32355.t1 | AT5G53160 | 77.473 | 182 | 39 | 1 | 2 | 181 | 4 | 185 | 2.61e-104 | 298 |
| MS.gene32355.t1 | AT1G01360 | 72.376 | 181 | 49 | 1 | 2 | 181 | 7 | 187 | 2.35e-96 | 277 |
| MS.gene32355.t1 | AT4G27920 | 66.304 | 184 | 60 | 2 | 1 | 183 | 1 | 183 | 5.55e-90 | 261 |
| MS.gene32355.t1 | AT4G01026 | 70.760 | 171 | 50 | 0 | 13 | 183 | 21 | 191 | 1.02e-87 | 256 |
| MS.gene32355.t1 | AT5G53160 | 75.439 | 114 | 26 | 1 | 2 | 113 | 4 | 117 | 4.73e-59 | 182 |
| MS.gene32355.t1 | AT2G38310 | 53.293 | 167 | 73 | 2 | 17 | 181 | 41 | 204 | 1.59e-54 | 172 |
| MS.gene32355.t1 | AT2G40330 | 48.503 | 167 | 82 | 2 | 13 | 175 | 46 | 212 | 1.47e-53 | 170 |
| MS.gene32355.t1 | AT5G05440 | 51.899 | 158 | 71 | 3 | 13 | 168 | 43 | 197 | 1.94e-53 | 169 |
| MS.gene32355.t1 | AT2G26040 | 47.619 | 168 | 83 | 3 | 15 | 178 | 22 | 188 | 1.06e-51 | 164 |
| MS.gene32355.t1 | AT4G17870 | 49.693 | 163 | 80 | 1 | 15 | 175 | 17 | 179 | 4.28e-49 | 158 |
| MS.gene32355.t1 | AT1G73000 | 41.573 | 178 | 92 | 3 | 7 | 173 | 30 | 206 | 3.47e-44 | 146 |
| MS.gene32355.t1 | AT5G45870 | 50.676 | 148 | 70 | 2 | 28 | 174 | 10 | 155 | 1.14e-39 | 132 |
| MS.gene32355.t1 | AT5G45860 | 49.091 | 165 | 75 | 3 | 12 | 175 | 1 | 157 | 1.25e-39 | 132 |
| MS.gene32355.t1 | AT5G46790 | 47.273 | 165 | 82 | 2 | 15 | 174 | 44 | 208 | 1.69e-39 | 134 |
| MS.gene32355.t1 | AT5G46790 | 47.273 | 165 | 82 | 2 | 15 | 174 | 44 | 208 | 1.69e-39 | 134 |
| MS.gene32355.t1 | AT4G18620 | 42.857 | 161 | 85 | 1 | 21 | 174 | 2 | 162 | 3.35e-35 | 121 |
Find 47 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCCATCAATAATTTC+AGG | 0.233126 | 1.4:-13690965 | None:intergenic |
| AATTGGAAGGTTTAGTAATA+TGG | 0.277883 | 1.4:+13689295 | MS.gene32355:CDS |
| GTTCTCAGCATCAGGATTAT+TGG | 0.292453 | 1.4:+13690747 | MS.gene32355:CDS |
| AGAGAAGTTGATGTTAAATC+AGG | 0.349446 | 1.4:+13690669 | MS.gene32355:CDS |
| CTCCACCCTGAAATTATTGA+TGG | 0.373274 | 1.4:+13690959 | MS.gene32355:CDS |
| CTCGTCTTTGGTGTTCCCCT+CGG | 0.382151 | 1.4:-13691026 | None:intergenic |
| AGCTCCTATACTCGATCAAT+TGG | 0.394763 | 1.4:-13691139 | None:intergenic |
| CTTTCTCTAGGTATGGTCCT+TGG | 0.413122 | 1.4:+13690563 | MS.gene32355:intron |
| TTGTAAGCAGATGTGTTGTA+AGG | 0.437036 | 1.4:+13690622 | MS.gene32355:CDS |
| TCGTCTTTGGTGTTCCCCTC+GGG | 0.441469 | 1.4:-13691025 | None:intergenic |
| GAAGTAGCAAGTCTCGTCTT+TGG | 0.441478 | 1.4:-13691038 | None:intergenic |
| ACAACACATCTGCTTACAAA+TGG | 0.446274 | 1.4:-13690618 | None:intergenic |
| ATGAGCATGTTCTCAGCATC+AGG | 0.451170 | 1.4:+13690739 | MS.gene32355:CDS |
| TATTAGAGCACCGGTTCCTC+AGG | 0.468954 | 1.4:+13689391 | MS.gene32355:CDS |
| CTTTCTGTACTTGTAGTAGC+AGG | 0.476962 | 1.4:-13690696 | None:intergenic |
| GCCTTCCATCAATAATTTCA+GGG | 0.477985 | 1.4:-13690964 | None:intergenic |
| TACTACAAGTACAGAAAGAT+TGG | 0.478896 | 1.4:+13690701 | MS.gene32355:CDS |
| GAAATTATTGATGGAAGGCC+AGG | 0.481587 | 1.4:+13690968 | MS.gene32355:CDS |
| AGGTATGGTCCTTGGTAAGA+AGG | 0.487057 | 1.4:+13690571 | MS.gene32355:intron |
| TTTCAGATTGCACTTGATAA+CGG | 0.490368 | 1.4:-13691068 | None:intergenic |
| AGACATCACCGGCAGCAGCC+TGG | 0.504488 | 1.4:+13689335 | MS.gene32355:CDS |
| AGAAGGGCAACCTGAGGAAC+CGG | 0.506005 | 1.4:-13689401 | None:intergenic |
| TGGTGGTGATCATCGACTTA+CGG | 0.507996 | 1.4:+13690767 | MS.gene32355:CDS |
| TGATGGAAGGCCAGGTACAC+TGG | 0.508216 | 1.4:+13690976 | MS.gene32355:CDS |
| GATTATGTCCAGGCTGCTGC+CGG | 0.530762 | 1.4:-13689343 | None:intergenic |
| GATTCAATTACCAGTGTACC+TGG | 0.531597 | 1.4:-13690986 | None:intergenic |
| AGCAATTCCTTCTGAGACAT+CGG | 0.537766 | 1.4:-13691098 | None:intergenic |
| AAGGTTTAGTAATATGGAGA+TGG | 0.538000 | 1.4:+13689301 | MS.gene32355:CDS |
| CTCTTAGACTTCCGATCTCG+AGG | 0.539438 | 1.4:-13690650 | None:intergenic |
| GAACATGCTCATTGTCATCA+AGG | 0.542897 | 1.4:-13690728 | None:intergenic |
| TGTTAAGCATATTAGAGCAC+CGG | 0.544425 | 1.4:+13689382 | MS.gene32355:CDS |
| ACCCTGAAATTATTGATGGA+AGG | 0.546775 | 1.4:+13690963 | MS.gene32355:CDS |
| CTCAGCATCAGGATTATTGG+TGG | 0.555236 | 1.4:+13690750 | MS.gene32355:CDS |
| TGTAAGCAGATGTGTTGTAA+GGG | 0.557883 | 1.4:+13690623 | MS.gene32355:CDS |
| TGAACCAATTGATCGAGTAT+AGG | 0.558155 | 1.4:+13691135 | MS.gene32355:CDS |
| CATCTTTCAGAACTATTCGT+CGG | 0.565624 | 1.4:+13690928 | MS.gene32355:intron |
| GAGAAGTTGATGTTAAATCA+GGG | 0.568344 | 1.4:+13690670 | MS.gene32355:CDS |
| GTAAGGGGAAACCTCGAGAT+CGG | 0.576734 | 1.4:+13690639 | MS.gene32355:CDS |
| GTAAGCAGATGTGTTGTAAG+GGG | 0.581576 | 1.4:+13690624 | MS.gene32355:CDS |
| TCACTTGCCGATGTCTCAGA+AGG | 0.585800 | 1.4:+13691091 | MS.gene32355:CDS |
| GAAGCACACTGATTATGTCC+AGG | 0.586081 | 1.4:-13689353 | None:intergenic |
| TTTGTGGTGGATATACCCGA+GGG | 0.646946 | 1.4:+13691010 | MS.gene32355:CDS |
| AATATATTAGAAGACATCAC+CGG | 0.658365 | 1.4:+13689324 | MS.gene32355:CDS |
| CTGATCGAACCTTCTTACCA+AGG | 0.687829 | 1.4:-13690580 | None:intergenic |
| TTCCATCAATAATTTCAGGG+TGG | 0.700428 | 1.4:-13690961 | None:intergenic |
| CTCGATCAATTGGTTCAGTG+CGG | 0.701144 | 1.4:-13691129 | None:intergenic |
| TTGTGGTGGATATACCCGAG+GGG | 0.768021 | 1.4:+13691011 | MS.gene32355:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAACAAAATATAGTTA+TGG | + | chr1.4:13689621-13689640 | MS.gene32355:intron | 15.0% |
| !! | ATAAATAACAAAAGAAAGAA+GGG | - | chr1.4:13689420-13689439 | None:intergenic | 15.0% |
| !! | TATAAATAACAAAAGAAAGA+AGG | - | chr1.4:13689421-13689440 | None:intergenic | 15.0% |
| !!! | TTCTAAAAAAACACTATTTA+AGG | - | chr1.4:13689600-13689619 | None:intergenic | 15.0% |
| !!! | TTTTTAAAGAAGAATCAATT+CGG | - | chr1.4:13690875-13690894 | None:intergenic | 15.0% |
| !! | CATTATACAAAAATATTGTG+AGG | - | chr1.4:13690501-13690520 | None:intergenic | 20.0% |
| !! | TGGTTATGTAAATGTTAAAA+CGG | + | chr1.4:13689641-13689660 | MS.gene32355:intron | 20.0% |
| !! | TTTAAATAGAAAATGAAGAG+CGG | - | chr1.4:13690196-13690215 | None:intergenic | 20.0% |
| !!! | TTCAATTTGATTTGAATTGT+TGG | + | chr1.4:13689827-13689846 | MS.gene32355:intron | 20.0% |
| !!! | TTGCTTTATTACTCTTTAAA+GGG | + | chr1.4:13690107-13690126 | MS.gene32355:intron | 20.0% |
| ! | AATATATTAGAAGACATCAC+CGG | + | chr1.4:13689324-13689343 | MS.gene32355:CDS | 25.0% |
| ! | AATTGGAAGGTTTAGTAATA+TGG | + | chr1.4:13689295-13689314 | MS.gene32355:CDS | 25.0% |
| ! | GGTAATTGGTATGAAATTTA+CGG | - | chr1.4:13690175-13690194 | None:intergenic | 25.0% |
| ! | GTAATTGGTATGAAATTTAC+GGG | - | chr1.4:13690174-13690193 | None:intergenic | 25.0% |
| ! | GTAATTTGAGAAAACAAAAG+TGG | + | chr1.4:13689730-13689749 | MS.gene32355:intron | 25.0% |
| ! | TAATTGGTATGAAATTTACG+GGG | - | chr1.4:13690173-13690192 | None:intergenic | 25.0% |
| ! | TCCTTAAAATGATAACTCTT+TGG | + | chr1.4:13690903-13690922 | MS.gene32355:intron | 25.0% |
| ! | TGCTATTGAATAAAGAGTTT+CGG | + | chr1.4:13690468-13690487 | MS.gene32355:intron | 25.0% |
| ! | TGTCGAGAAAATTAATAGTT+GGG | + | chr1.4:13690079-13690098 | MS.gene32355:intron | 25.0% |
| ! | TTGTCGAGAAAATTAATAGT+TGG | + | chr1.4:13690078-13690097 | MS.gene32355:intron | 25.0% |
| ! | TTGTGTTAGATATACAGTTA+TGG | + | chr1.4:13689540-13689559 | MS.gene32355:intron | 25.0% |
| !! | ACCAAAGAGTTATCATTTTA+AGG | - | chr1.4:13690907-13690926 | None:intergenic | 25.0% |
| !! | ACTATTAATTTTCTCGACAA+CGG | - | chr1.4:13690078-13690097 | None:intergenic | 25.0% |
| !! | ATAAGATTTTAAGCAAACAG+AGG | - | chr1.4:13690840-13690859 | None:intergenic | 25.0% |
| !! | CTTGCTTTATTACTCTTTAA+AGG | + | chr1.4:13690106-13690125 | MS.gene32355:intron | 25.0% |
| !!! | ACAATCTATTTTTGCATCTT+TGG | + | chr1.4:13690228-13690247 | MS.gene32355:intron | 25.0% |
| !!! | GAATGTTTTGATGATGTTTT+TGG | + | chr1.4:13689866-13689885 | MS.gene32355:intron | 25.0% |
| !!! | GATGTTTTTGGTCTATTTTA+TGG | + | chr1.4:13689878-13689897 | MS.gene32355:intron | 25.0% |
| AAATAAACATCACACAACGA+GGG | - | chr1.4:13690527-13690546 | None:intergenic | 30.0% | |
| AAGGTTTAGTAATATGGAGA+TGG | + | chr1.4:13689301-13689320 | MS.gene32355:CDS | 30.0% | |
| AGATATACAGTTATGGTTGT+TGG | + | chr1.4:13689547-13689566 | MS.gene32355:intron | 30.0% | |
| GAAAAAATCGAACTGAATTG+AGG | - | chr1.4:13690434-13690453 | None:intergenic | 30.0% | |
| TAAATAAACATCACACAACG+AGG | - | chr1.4:13690528-13690547 | None:intergenic | 30.0% | |
| TACTACAAGTACAGAAAGAT+TGG | + | chr1.4:13690701-13690720 | MS.gene32355:CDS | 30.0% | |
| TTTCAGATTGCACTTGATAA+CGG | - | chr1.4:13691071-13691090 | None:intergenic | 30.0% | |
| ! | ACTGGTAATTGAATCTTTTG+TGG | + | chr1.4:13690994-13691013 | MS.gene32355:CDS | 30.0% |
| !! | ACAAATGGTTTGTACTTTTG+TGG | - | chr1.4:13690606-13690625 | None:intergenic | 30.0% |
| !! | AGAGAAGTTGATGTTAAATC+AGG | + | chr1.4:13690669-13690688 | MS.gene32355:CDS | 30.0% |
| !! | GAGAAGTTGATGTTAAATCA+GGG | + | chr1.4:13690670-13690689 | MS.gene32355:CDS | 30.0% |
| !! | TAAAACGGTTAGCTGATTTT+TGG | + | chr1.4:13689656-13689675 | MS.gene32355:intron | 30.0% |
| !! | TGTGTGAAGATTTTTGTTGT+TGG | + | chr1.4:13689498-13689517 | MS.gene32355:intron | 30.0% |
| !!! | AAGTTTCTGGTCATTTTGTA+AGG | - | chr1.4:13690810-13690829 | None:intergenic | 30.0% |
| !!! | ATGCATTTTTAGCACATCAA+AGG | + | chr1.4:13690316-13690335 | MS.gene32355:intron | 30.0% |
| !!! | TGCTACTATCTTTTAGGTTT+TGG | + | chr1.4:13689934-13689953 | MS.gene32355:intron | 30.0% |
| AAGCAAGCAATTTCCTTTAG+AGG | + | chr1.4:13690033-13690052 | MS.gene32355:intron | 35.0% | |
| ACAACACATCTGCTTACAAA+TGG | - | chr1.4:13690621-13690640 | None:intergenic | 35.0% | |
| ACCCTGAAATTATTGATGGA+AGG | + | chr1.4:13690963-13690982 | MS.gene32355:CDS | 35.0% | |
| AGAAAATGAAGAGCGGTAAT+TGG | - | chr1.4:13690189-13690208 | None:intergenic | 35.0% | |
| AGCAAGCAATTTCCTTTAGA+GGG | + | chr1.4:13690034-13690053 | MS.gene32355:intron | 35.0% | |
| ATTGAGGTTCGCTTTGTAAT+TGG | - | chr1.4:13690418-13690437 | None:intergenic | 35.0% | |
| CAGAGGAACAAAAAAGTTTC+TGG | - | chr1.4:13690823-13690842 | None:intergenic | 35.0% | |
| CATCTTTCAGAACTATTCGT+CGG | + | chr1.4:13690928-13690947 | MS.gene32355:intron | 35.0% | |
| CATGTGTAAAAATCTTGTGG+TGG | + | chr1.4:13690251-13690270 | MS.gene32355:intron | 35.0% | |
| GCCTTCCATCAATAATTTCA+GGG | - | chr1.4:13690967-13690986 | None:intergenic | 35.0% | |
| TGGCATGTGTAAAAATCTTG+TGG | + | chr1.4:13690248-13690267 | MS.gene32355:intron | 35.0% | |
| TGTAAGCAGATGTGTTGTAA+GGG | + | chr1.4:13690623-13690642 | MS.gene32355:CDS | 35.0% | |
| TGTTAAGCATATTAGAGCAC+CGG | + | chr1.4:13689382-13689401 | MS.gene32355:CDS | 35.0% | |
| TGTTTGACATCAACATGAGT+CGG | + | chr1.4:13689790-13689809 | MS.gene32355:intron | 35.0% | |
| TTATCTGCTTTACCCTCTAA+AGG | - | chr1.4:13690049-13690068 | None:intergenic | 35.0% | |
| TTCCATCAATAATTTCAGGG+TGG | - | chr1.4:13690964-13690983 | None:intergenic | 35.0% | |
| TTGTAAGCAGATGTGTTGTA+AGG | + | chr1.4:13690622-13690641 | MS.gene32355:CDS | 35.0% | |
| ! | AGATTTGCTTTCTCTAGGTA+TGG | + | chr1.4:13690556-13690575 | MS.gene32355:intron | 35.0% |
| ! | CTGATCTGCTACTATCTTTT+AGG | + | chr1.4:13689928-13689947 | MS.gene32355:intron | 35.0% |
| ! | GGTAATTGAATCTTTTGTGG+TGG | + | chr1.4:13690997-13691016 | MS.gene32355:CDS | 35.0% |
| !!! | GATTTTTGTTGTTGGATGCA+TGG | + | chr1.4:13689506-13689525 | MS.gene32355:intron | 35.0% |
| ATCACATTGTACCACAAAGC+AGG | - | chr1.4:13689908-13689927 | None:intergenic | 40.0% | |
| CAGTTATGGTTGTTGGAACT+TGG | + | chr1.4:13689554-13689573 | MS.gene32355:intron | 40.0% | |
| CATCAAAGGTTCGATCAGAT+TGG | + | chr1.4:13690330-13690349 | MS.gene32355:intron | 40.0% | |
| CATCAACATGAGTCGGATAT+TGG | + | chr1.4:13689797-13689816 | MS.gene32355:intron | 40.0% | |
| CGAGTATAACTCATCAGTGT+CGG | - | chr1.4:13689711-13689730 | None:intergenic | 40.0% | |
| CTCCACCCTGAAATTATTGA+TGG | + | chr1.4:13690959-13690978 | MS.gene32355:CDS | 40.0% | |
| CTTTCTGTACTTGTAGTAGC+AGG | - | chr1.4:13690699-13690718 | None:intergenic | 40.0% | |
| GAAATTATTGATGGAAGGCC+AGG | + | chr1.4:13690968-13690987 | MS.gene32355:CDS | 40.0% | |
| GAACATGCTCATTGTCATCA+AGG | - | chr1.4:13690731-13690750 | None:intergenic | 40.0% | |
| GAGTATAACTCATCAGTGTC+GGG | - | chr1.4:13689710-13689729 | None:intergenic | 40.0% | |
| GATTCAATTACCAGTGTACC+TGG | - | chr1.4:13690989-13691008 | None:intergenic | 40.0% | |
| GGCCTTCCATCAATAATTTC+AGG | - | chr1.4:13690968-13690987 | None:intergenic | 40.0% | |
| GTAAGCAGATGTGTTGTAAG+GGG | + | chr1.4:13690624-13690643 | MS.gene32355:CDS | 40.0% | |
| GTTCTCAGCATCAGGATTAT+TGG | + | chr1.4:13690747-13690766 | MS.gene32355:CDS | 40.0% | |
| TGTTGTTGGATGCATGGTTA+TGG | + | chr1.4:13689512-13689531 | MS.gene32355:intron | 40.0% | |
| TTTATGGTTGACCTGCTTTG+TGG | + | chr1.4:13689894-13689913 | MS.gene32355:intron | 40.0% | |
| ! | AAGGTTCGATCAGATTGGTT+TGG | + | chr1.4:13690335-13690354 | MS.gene32355:intron | 40.0% |
| !! | AGCAATTCCTTCTGAGACAT+CGG | - | chr1.4:13691101-13691120 | None:intergenic | 40.0% |
| AAAGAAAGAAGGGCAACCTG+AGG | - | chr1.4:13689410-13689429 | None:intergenic | 45.0% | |
| AGGTATGGTCCTTGGTAAGA+AGG | + | chr1.4:13690571-13690590 | MS.gene32355:intron | 45.0% | |
| ATGAGCATGTTCTCAGCATC+AGG | + | chr1.4:13690739-13690758 | MS.gene32355:CDS | 45.0% | |
| CTCAGCATCAGGATTATTGG+TGG | + | chr1.4:13690750-13690769 | MS.gene32355:CDS | 45.0% | |
| CTGATCGAACCTTCTTACCA+AGG | - | chr1.4:13690583-13690602 | None:intergenic | 45.0% | |
| CTTTCTCTAGGTATGGTCCT+TGG | + | chr1.4:13690563-13690582 | MS.gene32355:intron | 45.0% | |
| GAAGTAGCAAGTCTCGTCTT+TGG | - | chr1.4:13691041-13691060 | None:intergenic | 45.0% | |
| GATCCTTGTGAAGCATAGTG+TGG | + | chr1.4:13689990-13690009 | MS.gene32355:intron | 45.0% | |
| TGACCACACTATGCTTCACA+AGG | - | chr1.4:13689996-13690015 | None:intergenic | 45.0% | |
| ! | CGCGTAGATTTGCTTTCTCT+AGG | + | chr1.4:13690551-13690570 | MS.gene32355:intron | 45.0% |
| ! | CTCGATCAATTGGTTCAGTG+CGG | - | chr1.4:13691132-13691151 | None:intergenic | 45.0% |
| ! | GAAGCACACTGATTATGTCC+AGG | - | chr1.4:13689356-13689375 | None:intergenic | 45.0% |
| !! | TGGTGGTGATCATCGACTTA+CGG | + | chr1.4:13690767-13690786 | MS.gene32355:CDS | 45.0% |
| !! | TTTGTGGTGGATATACCCGA+GGG | + | chr1.4:13691010-13691029 | MS.gene32355:CDS | 45.0% |
| !!! | TTTTGTGGTGGATATACCCG+AGG | + | chr1.4:13691009-13691028 | MS.gene32355:CDS | 45.0% |
| !!! | TATTCTTATTTTTTATTTTA+TGG | + | chr1.4:13689456-13689475 | MS.gene32355:intron | 5.0% |
| CTCTTAGACTTCCGATCTCG+AGG | - | chr1.4:13690653-13690672 | None:intergenic | 50.0% | |
| GTAAGGGGAAACCTCGAGAT+CGG | + | chr1.4:13690639-13690658 | MS.gene32355:CDS | 50.0% | |
| TCACTTGCCGATGTCTCAGA+AGG | + | chr1.4:13691091-13691110 | MS.gene32355:CDS | 50.0% | |
| !! | TATTAGAGCACCGGTTCCTC+AGG | + | chr1.4:13689391-13689410 | MS.gene32355:CDS | 50.0% |
| !! | TTGTGGTGGATATACCCGAG+GGG | + | chr1.4:13691011-13691030 | MS.gene32355:CDS | 50.0% |
| AGAAGGGCAACCTGAGGAAC+CGG | - | chr1.4:13689404-13689423 | None:intergenic | 55.0% | |
| GATTATGTCCAGGCTGCTGC+CGG | - | chr1.4:13689346-13689365 | None:intergenic | 55.0% | |
| TGATGGAAGGCCAGGTACAC+TGG | + | chr1.4:13690976-13690995 | MS.gene32355:CDS | 55.0% | |
| !! | CTCGTCTTTGGTGTTCCCCT+CGG | - | chr1.4:13691029-13691048 | None:intergenic | 55.0% |
| !! | TCGTCTTTGGTGTTCCCCTC+GGG | - | chr1.4:13691028-13691047 | None:intergenic | 55.0% |
| AGACATCACCGGCAGCAGCC+TGG | + | chr1.4:13689335-13689354 | MS.gene32355:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 13689287 | 13691156 | 13689287 | ID=MS.gene32355 |
| chr1.4 | mRNA | 13689287 | 13691156 | 13689287 | ID=MS.gene32355.t1;Parent=MS.gene32355 |
| chr1.4 | exon | 13689287 | 13689412 | 13689287 | ID=MS.gene32355.t1.exon1;Parent=MS.gene32355.t1 |
| chr1.4 | CDS | 13689287 | 13689412 | 13689287 | ID=cds.MS.gene32355.t1;Parent=MS.gene32355.t1 |
| chr1.4 | exon | 13690573 | 13690788 | 13690573 | ID=MS.gene32355.t1.exon2;Parent=MS.gene32355.t1 |
| chr1.4 | CDS | 13690573 | 13690788 | 13690573 | ID=cds.MS.gene32355.t1;Parent=MS.gene32355.t1 |
| chr1.4 | exon | 13690938 | 13691156 | 13690938 | ID=MS.gene32355.t1.exon3;Parent=MS.gene32355.t1 |
| chr1.4 | CDS | 13690938 | 13691156 | 13690938 | ID=cds.MS.gene32355.t1;Parent=MS.gene32355.t1 |
| Gene Sequence |
| Protein sequence |
